Multiple sequence alignment - TraesCS1A01G170100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G170100 chr1A 100.000 4252 0 0 1 4252 303848688 303852939 0.000000e+00 7853.0
1 TraesCS1A01G170100 chr1A 96.226 53 0 1 2820 2870 303851461 303851513 7.580000e-13 86.1
2 TraesCS1A01G170100 chr1A 96.226 53 0 1 2774 2826 303851507 303851557 7.580000e-13 86.1
3 TraesCS1A01G170100 chr1D 94.849 1262 49 10 570 1829 239802081 239803328 0.000000e+00 1956.0
4 TraesCS1A01G170100 chr1D 97.638 889 19 2 2784 3670 239804154 239805042 0.000000e+00 1524.0
5 TraesCS1A01G170100 chr1D 95.689 835 18 7 1895 2717 239803326 239804154 0.000000e+00 1327.0
6 TraesCS1A01G170100 chr1D 91.649 479 15 11 3774 4251 239805106 239805560 1.290000e-179 640.0
7 TraesCS1A01G170100 chr1D 79.036 415 66 10 5 418 292515027 292514633 9.070000e-67 265.0
8 TraesCS1A01G170100 chr1D 89.855 138 10 2 415 552 239801959 239802092 1.570000e-39 174.0
9 TraesCS1A01G170100 chr1D 94.340 53 1 1 2774 2826 239804190 239804240 3.520000e-11 80.5
10 TraesCS1A01G170100 chr1D 97.674 43 1 0 2828 2870 239804154 239804196 1.640000e-09 75.0
11 TraesCS1A01G170100 chr1B 89.552 737 45 17 679 1405 334237584 334238298 0.000000e+00 905.0
12 TraesCS1A01G170100 chr1B 96.368 413 15 0 2890 3302 334240242 334240654 0.000000e+00 680.0
13 TraesCS1A01G170100 chr1B 93.305 463 19 2 2277 2727 334239628 334240090 0.000000e+00 673.0
14 TraesCS1A01G170100 chr1B 96.111 180 4 1 3386 3565 334240687 334240863 1.500000e-74 291.0
15 TraesCS1A01G170100 chr1B 91.534 189 15 1 1522 1709 334238939 334239127 4.220000e-65 259.0
16 TraesCS1A01G170100 chr1B 76.066 422 81 18 5 412 92597223 92596808 7.210000e-48 202.0
17 TraesCS1A01G170100 chr1B 95.833 120 5 0 4133 4252 334241154 334241273 1.210000e-45 195.0
18 TraesCS1A01G170100 chr1B 91.971 137 9 2 416 552 334237405 334237539 1.560000e-44 191.0
19 TraesCS1A01G170100 chr1B 100.000 54 0 0 1469 1522 334238613 334238666 2.710000e-17 100.0
20 TraesCS1A01G170100 chr1B 100.000 46 0 0 570 615 334237528 334237573 7.580000e-13 86.1
21 TraesCS1A01G170100 chr7A 82.564 390 47 10 1 383 500566349 500566724 1.470000e-84 324.0
22 TraesCS1A01G170100 chr4D 80.193 414 57 13 5 417 465073252 465072863 1.930000e-73 287.0
23 TraesCS1A01G170100 chr4D 83.700 227 19 9 4044 4252 46621774 46622000 9.330000e-47 198.0
24 TraesCS1A01G170100 chr3A 81.333 375 47 10 5 379 231039186 231039537 2.500000e-72 283.0
25 TraesCS1A01G170100 chr5B 78.670 436 58 17 5 420 659735521 659735941 1.520000e-64 257.0
26 TraesCS1A01G170100 chr5B 76.568 303 48 8 6 291 436288102 436287806 1.230000e-30 145.0
27 TraesCS1A01G170100 chr4B 78.054 442 64 22 4 418 644242734 644242299 9.130000e-62 248.0
28 TraesCS1A01G170100 chr4B 90.000 130 12 1 4124 4252 68119090 68119219 2.630000e-37 167.0
29 TraesCS1A01G170100 chr2D 77.982 436 64 17 5 417 194809898 194809472 1.180000e-60 244.0
30 TraesCS1A01G170100 chr2D 80.303 330 48 12 5 323 591360993 591361316 2.560000e-57 233.0
31 TraesCS1A01G170100 chr2A 76.611 419 71 18 5 412 70285307 70285709 5.570000e-49 206.0
32 TraesCS1A01G170100 chr4A 83.260 227 20 9 4044 4252 552256754 552256528 4.340000e-45 193.0
33 TraesCS1A01G170100 chr4A 82.743 226 20 11 4044 4250 533461220 533461445 2.610000e-42 183.0
34 TraesCS1A01G170100 chr3B 74.641 418 65 25 5 399 793374380 793374779 3.430000e-31 147.0
35 TraesCS1A01G170100 chr7B 77.186 263 48 11 158 412 664321302 664321560 4.430000e-30 143.0
36 TraesCS1A01G170100 chr7B 76.806 263 49 11 158 412 664349496 664349754 2.060000e-28 137.0
37 TraesCS1A01G170100 chr6B 85.714 126 14 4 169 292 51017082 51017205 3.450000e-26 130.0
38 TraesCS1A01G170100 chr6D 87.850 107 13 0 5 111 449162657 449162551 4.460000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G170100 chr1A 303848688 303852939 4251 False 2675.066667 7853 97.484000 1 4252 3 chr1A.!!$F1 4251
1 TraesCS1A01G170100 chr1D 239801959 239805560 3601 False 825.214286 1956 94.527714 415 4251 7 chr1D.!!$F1 3836
2 TraesCS1A01G170100 chr1B 334237405 334241273 3868 False 375.566667 905 94.963778 416 4252 9 chr1B.!!$F1 3836

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
319 320 0.034337 GACTTGTGGGCCAACGACTA 59.966 55.0 8.40 0.00 0.00 2.59 F
320 321 0.034896 ACTTGTGGGCCAACGACTAG 59.965 55.0 8.40 4.66 36.88 2.57 F
550 553 0.172578 GGGAAACATTTACGCCAGCC 59.827 55.0 0.00 0.00 0.00 4.85 F
563 566 0.387565 GCCAGCCCTTTGTCGAAAAA 59.612 50.0 0.00 0.00 0.00 1.94 F
1080 1085 0.535335 TCGCCTGGATCAACACTACC 59.465 55.0 0.00 0.00 0.00 3.18 F
2096 2710 0.165295 CACTGTCGCAGCACATTGAG 59.835 55.0 6.74 0.00 34.37 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1216 1241 0.452122 CATCCCGAAACGCAACGAAC 60.452 55.000 0.00 0.00 0.00 3.95 R
1460 1485 0.650512 ACGCCACATAAATTCGCTCG 59.349 50.000 0.00 0.00 0.00 5.03 R
1758 2372 1.149361 TCACGCGGTTCTGACAACAC 61.149 55.000 12.47 0.00 0.00 3.32 R
1805 2419 1.609841 CCAGACTGCTCATGTGCTTCA 60.610 52.381 19.60 0.04 0.00 3.02 R
2919 3683 0.110056 GCCTTCACAATCTGCACACG 60.110 55.000 0.00 0.00 0.00 4.49 R
3691 4504 0.032813 ACAAGGCCCTTGATGATGGG 60.033 55.000 29.74 0.73 43.42 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 4.056125 CTGCAGCAGGGACGACGA 62.056 66.667 15.35 0.00 0.00 4.20
64 65 4.357947 TGCAGCAGGGACGACGAC 62.358 66.667 0.00 0.00 0.00 4.34
66 67 4.778415 CAGCAGGGACGACGACGG 62.778 72.222 12.58 0.00 44.46 4.79
100 101 4.970174 GACGACGACGACGATGAT 57.030 55.556 25.15 3.47 42.66 2.45
101 102 2.471065 GACGACGACGACGATGATG 58.529 57.895 25.15 1.27 42.66 3.07
102 103 0.924363 GACGACGACGACGATGATGG 60.924 60.000 25.15 0.00 42.66 3.51
103 104 2.286559 CGACGACGACGATGATGGC 61.287 63.158 15.32 0.00 42.66 4.40
104 105 2.277949 ACGACGACGATGATGGCG 60.278 61.111 15.32 0.00 42.66 5.69
105 106 2.024163 CGACGACGATGATGGCGA 59.976 61.111 0.00 0.00 42.66 5.54
106 107 2.286559 CGACGACGATGATGGCGAC 61.287 63.158 0.00 0.00 42.66 5.19
108 109 3.024609 CGACGATGATGGCGACGG 61.025 66.667 0.00 0.00 41.59 4.79
109 110 3.330853 GACGATGATGGCGACGGC 61.331 66.667 15.43 15.43 38.90 5.68
111 112 4.923710 CGATGATGGCGACGGCGA 62.924 66.667 18.90 0.00 41.24 5.54
126 127 2.571757 CGACTGCACCCGCTTCTA 59.428 61.111 0.00 0.00 39.64 2.10
127 128 1.805945 CGACTGCACCCGCTTCTAC 60.806 63.158 0.00 0.00 39.64 2.59
128 129 1.292223 GACTGCACCCGCTTCTACA 59.708 57.895 0.00 0.00 39.64 2.74
129 130 0.737715 GACTGCACCCGCTTCTACAG 60.738 60.000 0.00 0.00 39.64 2.74
130 131 1.185618 ACTGCACCCGCTTCTACAGA 61.186 55.000 0.00 0.00 39.64 3.41
131 132 0.737715 CTGCACCCGCTTCTACAGAC 60.738 60.000 0.00 0.00 39.64 3.51
132 133 1.185618 TGCACCCGCTTCTACAGACT 61.186 55.000 0.00 0.00 39.64 3.24
133 134 0.037232 GCACCCGCTTCTACAGACTT 60.037 55.000 0.00 0.00 34.30 3.01
134 135 1.608283 GCACCCGCTTCTACAGACTTT 60.608 52.381 0.00 0.00 34.30 2.66
135 136 2.767505 CACCCGCTTCTACAGACTTTT 58.232 47.619 0.00 0.00 0.00 2.27
136 137 2.737252 CACCCGCTTCTACAGACTTTTC 59.263 50.000 0.00 0.00 0.00 2.29
137 138 1.993370 CCCGCTTCTACAGACTTTTCG 59.007 52.381 0.00 0.00 0.00 3.46
138 139 2.352421 CCCGCTTCTACAGACTTTTCGA 60.352 50.000 0.00 0.00 0.00 3.71
139 140 2.662156 CCGCTTCTACAGACTTTTCGAC 59.338 50.000 0.00 0.00 0.00 4.20
140 141 3.305964 CGCTTCTACAGACTTTTCGACA 58.694 45.455 0.00 0.00 0.00 4.35
141 142 3.921021 CGCTTCTACAGACTTTTCGACAT 59.079 43.478 0.00 0.00 0.00 3.06
142 143 4.201532 CGCTTCTACAGACTTTTCGACATG 60.202 45.833 0.00 0.00 0.00 3.21
143 144 4.686554 GCTTCTACAGACTTTTCGACATGT 59.313 41.667 0.00 0.00 0.00 3.21
144 145 5.862323 GCTTCTACAGACTTTTCGACATGTA 59.138 40.000 0.00 0.00 0.00 2.29
145 146 6.034044 GCTTCTACAGACTTTTCGACATGTAG 59.966 42.308 0.00 0.00 40.79 2.74
146 147 6.812879 TCTACAGACTTTTCGACATGTAGA 57.187 37.500 4.35 4.35 44.00 2.59
147 148 6.609533 TCTACAGACTTTTCGACATGTAGAC 58.390 40.000 8.29 0.00 42.36 2.59
148 149 4.227538 ACAGACTTTTCGACATGTAGACG 58.772 43.478 8.29 3.53 36.74 4.18
149 150 4.023450 ACAGACTTTTCGACATGTAGACGA 60.023 41.667 8.29 6.09 42.31 4.20
150 151 4.321217 CAGACTTTTCGACATGTAGACGAC 59.679 45.833 8.29 1.71 43.59 4.34
151 152 3.231965 ACTTTTCGACATGTAGACGACG 58.768 45.455 8.29 1.98 43.59 5.12
152 153 3.058708 ACTTTTCGACATGTAGACGACGA 60.059 43.478 8.29 4.56 43.59 4.20
153 154 2.515641 TTCGACATGTAGACGACGAC 57.484 50.000 8.29 0.00 43.59 4.34
154 155 0.367887 TCGACATGTAGACGACGACG 59.632 55.000 4.35 5.58 39.36 5.12
155 156 1.186339 CGACATGTAGACGACGACGC 61.186 60.000 7.30 0.27 43.96 5.19
156 157 0.096628 GACATGTAGACGACGACGCT 59.903 55.000 7.30 8.20 43.96 5.07
157 158 0.179197 ACATGTAGACGACGACGCTG 60.179 55.000 7.30 0.00 43.96 5.18
158 159 0.861866 CATGTAGACGACGACGCTGG 60.862 60.000 7.30 0.00 43.96 4.85
159 160 2.576317 GTAGACGACGACGCTGGC 60.576 66.667 7.30 0.00 43.96 4.85
160 161 2.745100 TAGACGACGACGCTGGCT 60.745 61.111 7.30 0.00 43.96 4.75
161 162 1.448365 TAGACGACGACGCTGGCTA 60.448 57.895 7.30 0.00 43.96 3.93
162 163 1.426816 TAGACGACGACGCTGGCTAG 61.427 60.000 7.30 0.00 43.96 3.42
163 164 3.736482 GACGACGACGCTGGCTAGG 62.736 68.421 7.30 0.00 43.96 3.02
165 166 3.827898 GACGACGCTGGCTAGGCT 61.828 66.667 18.18 0.00 0.00 4.58
166 167 3.358076 GACGACGCTGGCTAGGCTT 62.358 63.158 18.18 0.00 0.00 4.35
167 168 2.125512 CGACGCTGGCTAGGCTTT 60.126 61.111 18.18 0.00 0.00 3.51
168 169 1.741770 CGACGCTGGCTAGGCTTTT 60.742 57.895 18.18 0.00 0.00 2.27
169 170 0.459585 CGACGCTGGCTAGGCTTTTA 60.460 55.000 18.18 0.00 0.00 1.52
170 171 1.291132 GACGCTGGCTAGGCTTTTAG 58.709 55.000 18.18 7.41 0.00 1.85
171 172 0.613777 ACGCTGGCTAGGCTTTTAGT 59.386 50.000 18.18 7.62 0.00 2.24
172 173 1.003233 ACGCTGGCTAGGCTTTTAGTT 59.997 47.619 18.18 0.00 0.00 2.24
173 174 2.084546 CGCTGGCTAGGCTTTTAGTTT 58.915 47.619 18.18 0.00 0.00 2.66
174 175 2.159517 CGCTGGCTAGGCTTTTAGTTTG 60.160 50.000 18.18 0.00 0.00 2.93
175 176 2.164422 GCTGGCTAGGCTTTTAGTTTGG 59.836 50.000 18.18 0.00 0.00 3.28
176 177 2.164422 CTGGCTAGGCTTTTAGTTTGGC 59.836 50.000 18.18 0.00 0.00 4.52
177 178 1.132453 GGCTAGGCTTTTAGTTTGGCG 59.868 52.381 9.46 0.00 0.00 5.69
178 179 1.810755 GCTAGGCTTTTAGTTTGGCGT 59.189 47.619 0.00 0.00 0.00 5.68
179 180 3.004862 GCTAGGCTTTTAGTTTGGCGTA 58.995 45.455 0.00 0.00 0.00 4.42
180 181 3.437741 GCTAGGCTTTTAGTTTGGCGTAA 59.562 43.478 0.00 0.00 0.00 3.18
181 182 4.095932 GCTAGGCTTTTAGTTTGGCGTAAT 59.904 41.667 0.00 0.00 0.00 1.89
182 183 5.392703 GCTAGGCTTTTAGTTTGGCGTAATT 60.393 40.000 0.00 0.00 0.00 1.40
183 184 6.183360 GCTAGGCTTTTAGTTTGGCGTAATTA 60.183 38.462 0.00 0.00 0.00 1.40
184 185 6.190954 AGGCTTTTAGTTTGGCGTAATTAG 57.809 37.500 0.00 0.00 0.00 1.73
185 186 5.124936 AGGCTTTTAGTTTGGCGTAATTAGG 59.875 40.000 0.69 0.69 0.00 2.69
186 187 4.796830 GCTTTTAGTTTGGCGTAATTAGGC 59.203 41.667 19.46 19.46 36.43 3.93
187 188 4.603231 TTTAGTTTGGCGTAATTAGGCG 57.397 40.909 20.52 7.47 37.92 5.52
188 189 2.103537 AGTTTGGCGTAATTAGGCGT 57.896 45.000 20.52 3.69 37.92 5.68
189 190 1.735571 AGTTTGGCGTAATTAGGCGTG 59.264 47.619 20.52 0.00 37.92 5.34
190 191 1.088306 TTTGGCGTAATTAGGCGTGG 58.912 50.000 20.52 0.00 37.92 4.94
191 192 0.036199 TTGGCGTAATTAGGCGTGGT 60.036 50.000 20.52 0.00 37.92 4.16
192 193 0.036199 TGGCGTAATTAGGCGTGGTT 60.036 50.000 20.52 0.00 37.92 3.67
193 194 1.089112 GGCGTAATTAGGCGTGGTTT 58.911 50.000 20.52 0.00 37.92 3.27
194 195 1.202098 GGCGTAATTAGGCGTGGTTTG 60.202 52.381 20.52 0.00 37.92 2.93
195 196 1.792632 GCGTAATTAGGCGTGGTTTGC 60.793 52.381 13.86 0.00 0.00 3.68
196 197 1.465387 CGTAATTAGGCGTGGTTTGCA 59.535 47.619 0.00 0.00 0.00 4.08
197 198 2.096819 CGTAATTAGGCGTGGTTTGCAT 59.903 45.455 0.00 0.00 0.00 3.96
198 199 2.652941 AATTAGGCGTGGTTTGCATG 57.347 45.000 0.00 0.00 0.00 4.06
199 200 1.544724 ATTAGGCGTGGTTTGCATGT 58.455 45.000 0.00 0.00 0.00 3.21
200 201 0.595588 TTAGGCGTGGTTTGCATGTG 59.404 50.000 0.00 0.00 0.00 3.21
201 202 0.536233 TAGGCGTGGTTTGCATGTGT 60.536 50.000 0.00 0.00 0.00 3.72
202 203 1.067250 GGCGTGGTTTGCATGTGTT 59.933 52.632 0.00 0.00 0.00 3.32
203 204 0.529555 GGCGTGGTTTGCATGTGTTT 60.530 50.000 0.00 0.00 0.00 2.83
204 205 1.285578 GCGTGGTTTGCATGTGTTTT 58.714 45.000 0.00 0.00 0.00 2.43
205 206 2.464865 GCGTGGTTTGCATGTGTTTTA 58.535 42.857 0.00 0.00 0.00 1.52
206 207 3.056304 GCGTGGTTTGCATGTGTTTTAT 58.944 40.909 0.00 0.00 0.00 1.40
207 208 3.121058 GCGTGGTTTGCATGTGTTTTATG 60.121 43.478 0.00 0.00 0.00 1.90
208 209 4.047822 CGTGGTTTGCATGTGTTTTATGT 58.952 39.130 0.00 0.00 0.00 2.29
209 210 4.505922 CGTGGTTTGCATGTGTTTTATGTT 59.494 37.500 0.00 0.00 0.00 2.71
210 211 5.006165 CGTGGTTTGCATGTGTTTTATGTTT 59.994 36.000 0.00 0.00 0.00 2.83
211 212 6.456181 CGTGGTTTGCATGTGTTTTATGTTTT 60.456 34.615 0.00 0.00 0.00 2.43
212 213 7.247019 GTGGTTTGCATGTGTTTTATGTTTTT 58.753 30.769 0.00 0.00 0.00 1.94
213 214 8.391106 GTGGTTTGCATGTGTTTTATGTTTTTA 58.609 29.630 0.00 0.00 0.00 1.52
214 215 9.113838 TGGTTTGCATGTGTTTTATGTTTTTAT 57.886 25.926 0.00 0.00 0.00 1.40
239 240 7.447374 ACAAATTTCAATGAAGTATCACCGA 57.553 32.000 0.00 0.00 38.69 4.69
240 241 7.530010 ACAAATTTCAATGAAGTATCACCGAG 58.470 34.615 0.00 0.00 38.69 4.63
241 242 7.174946 ACAAATTTCAATGAAGTATCACCGAGT 59.825 33.333 0.00 0.00 38.69 4.18
242 243 7.687941 AATTTCAATGAAGTATCACCGAGTT 57.312 32.000 0.00 0.00 38.69 3.01
243 244 7.687941 ATTTCAATGAAGTATCACCGAGTTT 57.312 32.000 0.00 0.00 38.69 2.66
244 245 6.480524 TTCAATGAAGTATCACCGAGTTTG 57.519 37.500 0.00 0.00 38.69 2.93
245 246 5.547465 TCAATGAAGTATCACCGAGTTTGT 58.453 37.500 0.00 0.00 38.69 2.83
246 247 5.408299 TCAATGAAGTATCACCGAGTTTGTG 59.592 40.000 0.00 0.00 38.69 3.33
247 248 4.330944 TGAAGTATCACCGAGTTTGTGT 57.669 40.909 0.00 0.00 35.25 3.72
248 249 5.456548 TGAAGTATCACCGAGTTTGTGTA 57.543 39.130 0.00 0.00 35.25 2.90
249 250 5.845103 TGAAGTATCACCGAGTTTGTGTAA 58.155 37.500 0.00 0.00 35.25 2.41
250 251 6.282167 TGAAGTATCACCGAGTTTGTGTAAA 58.718 36.000 0.00 0.00 35.25 2.01
251 252 6.762187 TGAAGTATCACCGAGTTTGTGTAAAA 59.238 34.615 0.00 0.00 35.25 1.52
252 253 7.280428 TGAAGTATCACCGAGTTTGTGTAAAAA 59.720 33.333 0.00 0.00 35.25 1.94
253 254 7.739498 AGTATCACCGAGTTTGTGTAAAAAT 57.261 32.000 0.00 0.00 35.25 1.82
254 255 7.803724 AGTATCACCGAGTTTGTGTAAAAATC 58.196 34.615 0.00 0.00 35.25 2.17
255 256 5.085636 TCACCGAGTTTGTGTAAAAATCG 57.914 39.130 12.21 12.21 37.18 3.34
256 257 3.662186 CACCGAGTTTGTGTAAAAATCGC 59.338 43.478 13.35 0.00 36.61 4.58
257 258 3.231160 CCGAGTTTGTGTAAAAATCGCC 58.769 45.455 13.35 0.00 36.61 5.54
258 259 2.900046 CGAGTTTGTGTAAAAATCGCCG 59.100 45.455 7.58 0.00 33.42 6.46
259 260 3.363182 CGAGTTTGTGTAAAAATCGCCGA 60.363 43.478 7.58 0.00 33.42 5.54
260 261 4.141855 AGTTTGTGTAAAAATCGCCGAG 57.858 40.909 0.00 0.00 0.00 4.63
261 262 3.562557 AGTTTGTGTAAAAATCGCCGAGT 59.437 39.130 0.00 0.00 0.00 4.18
262 263 4.035909 AGTTTGTGTAAAAATCGCCGAGTT 59.964 37.500 0.00 0.00 0.00 3.01
263 264 4.555348 TTGTGTAAAAATCGCCGAGTTT 57.445 36.364 6.72 6.72 31.06 2.66
264 265 3.879427 TGTGTAAAAATCGCCGAGTTTG 58.121 40.909 13.60 0.00 30.27 2.93
265 266 2.655001 GTGTAAAAATCGCCGAGTTTGC 59.345 45.455 13.60 10.04 30.27 3.68
266 267 2.290916 TGTAAAAATCGCCGAGTTTGCA 59.709 40.909 13.60 12.37 30.27 4.08
267 268 2.500509 AAAAATCGCCGAGTTTGCAA 57.499 40.000 13.60 0.00 30.27 4.08
268 269 2.500509 AAAATCGCCGAGTTTGCAAA 57.499 40.000 12.07 8.05 28.65 3.68
269 270 2.500509 AAATCGCCGAGTTTGCAAAA 57.499 40.000 14.67 0.00 0.00 2.44
270 271 2.500509 AATCGCCGAGTTTGCAAAAA 57.499 40.000 14.67 0.00 0.00 1.94
271 272 2.723124 ATCGCCGAGTTTGCAAAAAT 57.277 40.000 14.67 5.58 0.00 1.82
272 273 2.500509 TCGCCGAGTTTGCAAAAATT 57.499 40.000 14.67 2.42 0.00 1.82
273 274 2.815478 TCGCCGAGTTTGCAAAAATTT 58.185 38.095 14.67 0.00 0.00 1.82
274 275 2.537625 TCGCCGAGTTTGCAAAAATTTG 59.462 40.909 14.67 6.65 41.03 2.32
275 276 2.537625 CGCCGAGTTTGCAAAAATTTGA 59.462 40.909 14.67 0.00 40.55 2.69
276 277 3.000724 CGCCGAGTTTGCAAAAATTTGAA 59.999 39.130 14.67 0.00 40.55 2.69
277 278 4.318689 CGCCGAGTTTGCAAAAATTTGAAT 60.319 37.500 14.67 0.00 40.55 2.57
278 279 4.905295 GCCGAGTTTGCAAAAATTTGAATG 59.095 37.500 14.67 0.00 40.55 2.67
279 280 5.277250 GCCGAGTTTGCAAAAATTTGAATGA 60.277 36.000 14.67 0.00 40.55 2.57
280 281 6.713520 CCGAGTTTGCAAAAATTTGAATGAA 58.286 32.000 14.67 0.00 40.55 2.57
281 282 7.185453 CCGAGTTTGCAAAAATTTGAATGAAA 58.815 30.769 14.67 0.83 40.55 2.69
282 283 7.856894 CCGAGTTTGCAAAAATTTGAATGAAAT 59.143 29.630 14.67 0.00 40.55 2.17
283 284 9.861138 CGAGTTTGCAAAAATTTGAATGAAATA 57.139 25.926 14.67 0.00 40.55 1.40
287 288 8.877753 TTGCAAAAATTTGAATGAAATATCGC 57.122 26.923 9.96 0.00 40.55 4.58
288 289 7.462731 TGCAAAAATTTGAATGAAATATCGCC 58.537 30.769 9.96 0.00 40.55 5.54
289 290 6.624526 GCAAAAATTTGAATGAAATATCGCCG 59.375 34.615 9.96 0.00 40.55 6.46
290 291 7.463913 GCAAAAATTTGAATGAAATATCGCCGA 60.464 33.333 9.96 0.00 40.55 5.54
291 292 8.379161 CAAAAATTTGAATGAAATATCGCCGAA 58.621 29.630 0.00 0.00 40.55 4.30
292 293 7.449934 AAATTTGAATGAAATATCGCCGAAC 57.550 32.000 0.00 0.00 32.76 3.95
293 294 4.545823 TTGAATGAAATATCGCCGAACC 57.454 40.909 0.00 0.00 0.00 3.62
294 295 2.875933 TGAATGAAATATCGCCGAACCC 59.124 45.455 0.00 0.00 0.00 4.11
295 296 1.508632 ATGAAATATCGCCGAACCCG 58.491 50.000 0.00 0.00 0.00 5.28
296 297 1.155424 TGAAATATCGCCGAACCCGC 61.155 55.000 0.00 0.00 0.00 6.13
297 298 1.153329 AAATATCGCCGAACCCGCA 60.153 52.632 0.00 0.00 0.00 5.69
298 299 0.745128 AAATATCGCCGAACCCGCAA 60.745 50.000 0.00 0.00 0.00 4.85
299 300 1.433837 AATATCGCCGAACCCGCAAC 61.434 55.000 0.00 0.00 0.00 4.17
304 305 2.663852 CCGAACCCGCAACGACTT 60.664 61.111 0.00 0.00 0.00 3.01
305 306 2.549282 CGAACCCGCAACGACTTG 59.451 61.111 0.00 0.00 0.00 3.16
306 307 2.241880 CGAACCCGCAACGACTTGT 61.242 57.895 0.00 0.00 0.00 3.16
307 308 1.278637 GAACCCGCAACGACTTGTG 59.721 57.895 0.00 0.00 37.60 3.33
311 312 4.025401 CGCAACGACTTGTGGGCC 62.025 66.667 0.00 0.00 34.70 5.80
312 313 2.904866 GCAACGACTTGTGGGCCA 60.905 61.111 0.00 0.00 0.00 5.36
313 314 2.485795 GCAACGACTTGTGGGCCAA 61.486 57.895 8.40 0.00 0.00 4.52
314 315 1.358759 CAACGACTTGTGGGCCAAC 59.641 57.895 8.40 2.12 0.00 3.77
315 316 2.184167 AACGACTTGTGGGCCAACG 61.184 57.895 8.40 11.97 0.00 4.10
316 317 2.280524 CGACTTGTGGGCCAACGA 60.281 61.111 8.40 2.09 0.00 3.85
317 318 2.604174 CGACTTGTGGGCCAACGAC 61.604 63.158 8.40 0.00 0.00 4.34
318 319 1.227853 GACTTGTGGGCCAACGACT 60.228 57.895 8.40 0.00 0.00 4.18
319 320 0.034337 GACTTGTGGGCCAACGACTA 59.966 55.000 8.40 0.00 0.00 2.59
320 321 0.034896 ACTTGTGGGCCAACGACTAG 59.965 55.000 8.40 4.66 36.88 2.57
321 322 0.320374 CTTGTGGGCCAACGACTAGA 59.680 55.000 8.40 0.00 33.77 2.43
322 323 0.759959 TTGTGGGCCAACGACTAGAA 59.240 50.000 8.40 0.00 0.00 2.10
323 324 0.759959 TGTGGGCCAACGACTAGAAA 59.240 50.000 8.40 0.00 0.00 2.52
324 325 1.349688 TGTGGGCCAACGACTAGAAAT 59.650 47.619 8.40 0.00 0.00 2.17
325 326 1.737793 GTGGGCCAACGACTAGAAATG 59.262 52.381 8.40 0.00 0.00 2.32
326 327 1.626321 TGGGCCAACGACTAGAAATGA 59.374 47.619 2.13 0.00 0.00 2.57
327 328 2.039216 TGGGCCAACGACTAGAAATGAA 59.961 45.455 2.13 0.00 0.00 2.57
328 329 2.678336 GGGCCAACGACTAGAAATGAAG 59.322 50.000 4.39 0.00 0.00 3.02
329 330 3.335579 GGCCAACGACTAGAAATGAAGT 58.664 45.455 0.00 0.00 0.00 3.01
330 331 4.501071 GGCCAACGACTAGAAATGAAGTA 58.499 43.478 0.00 0.00 0.00 2.24
331 332 4.933400 GGCCAACGACTAGAAATGAAGTAA 59.067 41.667 0.00 0.00 0.00 2.24
332 333 5.585047 GGCCAACGACTAGAAATGAAGTAAT 59.415 40.000 0.00 0.00 0.00 1.89
333 334 6.238130 GGCCAACGACTAGAAATGAAGTAATC 60.238 42.308 0.00 0.00 0.00 1.75
334 335 6.238130 GCCAACGACTAGAAATGAAGTAATCC 60.238 42.308 0.00 0.00 0.00 3.01
335 336 7.042335 CCAACGACTAGAAATGAAGTAATCCT 58.958 38.462 0.00 0.00 0.00 3.24
336 337 7.222999 CCAACGACTAGAAATGAAGTAATCCTC 59.777 40.741 0.00 0.00 0.00 3.71
337 338 7.406031 ACGACTAGAAATGAAGTAATCCTCA 57.594 36.000 0.00 0.00 0.00 3.86
338 339 7.484975 ACGACTAGAAATGAAGTAATCCTCAG 58.515 38.462 0.00 0.00 0.00 3.35
339 340 7.339721 ACGACTAGAAATGAAGTAATCCTCAGA 59.660 37.037 0.00 0.00 0.00 3.27
340 341 7.860373 CGACTAGAAATGAAGTAATCCTCAGAG 59.140 40.741 0.00 0.00 0.00 3.35
341 342 8.830915 ACTAGAAATGAAGTAATCCTCAGAGA 57.169 34.615 0.00 0.00 0.00 3.10
342 343 8.691797 ACTAGAAATGAAGTAATCCTCAGAGAC 58.308 37.037 0.00 0.00 0.00 3.36
343 344 6.883744 AGAAATGAAGTAATCCTCAGAGACC 58.116 40.000 0.00 0.00 0.00 3.85
344 345 6.441924 AGAAATGAAGTAATCCTCAGAGACCA 59.558 38.462 0.00 0.00 0.00 4.02
345 346 6.627087 AATGAAGTAATCCTCAGAGACCAA 57.373 37.500 0.00 0.00 0.00 3.67
346 347 6.821616 ATGAAGTAATCCTCAGAGACCAAT 57.178 37.500 0.00 0.00 0.00 3.16
347 348 6.227298 TGAAGTAATCCTCAGAGACCAATC 57.773 41.667 0.00 0.00 0.00 2.67
348 349 5.960811 TGAAGTAATCCTCAGAGACCAATCT 59.039 40.000 0.00 0.00 38.15 2.40
349 350 7.126061 TGAAGTAATCCTCAGAGACCAATCTA 58.874 38.462 0.00 0.00 34.34 1.98
350 351 7.619698 TGAAGTAATCCTCAGAGACCAATCTAA 59.380 37.037 0.00 0.00 34.34 2.10
351 352 7.354751 AGTAATCCTCAGAGACCAATCTAAC 57.645 40.000 0.00 0.00 34.34 2.34
352 353 4.927978 ATCCTCAGAGACCAATCTAACG 57.072 45.455 0.00 0.00 34.34 3.18
353 354 2.427453 TCCTCAGAGACCAATCTAACGC 59.573 50.000 0.00 0.00 34.34 4.84
354 355 2.482142 CCTCAGAGACCAATCTAACGCC 60.482 54.545 0.00 0.00 34.34 5.68
355 356 1.134367 TCAGAGACCAATCTAACGCCG 59.866 52.381 0.00 0.00 34.34 6.46
356 357 1.134367 CAGAGACCAATCTAACGCCGA 59.866 52.381 0.00 0.00 34.34 5.54
357 358 2.032620 AGAGACCAATCTAACGCCGAT 58.967 47.619 0.00 0.00 34.34 4.18
358 359 2.431057 AGAGACCAATCTAACGCCGATT 59.569 45.455 0.00 0.00 34.34 3.34
359 360 2.795470 GAGACCAATCTAACGCCGATTC 59.205 50.000 0.00 0.00 34.34 2.52
360 361 2.167693 AGACCAATCTAACGCCGATTCA 59.832 45.455 0.00 0.00 31.46 2.57
361 362 2.277084 ACCAATCTAACGCCGATTCAC 58.723 47.619 0.00 0.00 0.00 3.18
362 363 1.597663 CCAATCTAACGCCGATTCACC 59.402 52.381 0.00 0.00 0.00 4.02
363 364 1.597663 CAATCTAACGCCGATTCACCC 59.402 52.381 0.00 0.00 0.00 4.61
364 365 1.120530 ATCTAACGCCGATTCACCCT 58.879 50.000 0.00 0.00 0.00 4.34
365 366 0.458669 TCTAACGCCGATTCACCCTC 59.541 55.000 0.00 0.00 0.00 4.30
366 367 0.174845 CTAACGCCGATTCACCCTCA 59.825 55.000 0.00 0.00 0.00 3.86
367 368 0.174845 TAACGCCGATTCACCCTCAG 59.825 55.000 0.00 0.00 0.00 3.35
368 369 1.541310 AACGCCGATTCACCCTCAGA 61.541 55.000 0.00 0.00 0.00 3.27
369 370 1.519455 CGCCGATTCACCCTCAGAC 60.519 63.158 0.00 0.00 0.00 3.51
370 371 1.153349 GCCGATTCACCCTCAGACC 60.153 63.158 0.00 0.00 0.00 3.85
371 372 1.141881 CCGATTCACCCTCAGACCG 59.858 63.158 0.00 0.00 0.00 4.79
372 373 1.519455 CGATTCACCCTCAGACCGC 60.519 63.158 0.00 0.00 0.00 5.68
373 374 1.901085 GATTCACCCTCAGACCGCT 59.099 57.895 0.00 0.00 0.00 5.52
374 375 0.250513 GATTCACCCTCAGACCGCTT 59.749 55.000 0.00 0.00 0.00 4.68
375 376 0.693049 ATTCACCCTCAGACCGCTTT 59.307 50.000 0.00 0.00 0.00 3.51
376 377 0.472471 TTCACCCTCAGACCGCTTTT 59.528 50.000 0.00 0.00 0.00 2.27
377 378 0.472471 TCACCCTCAGACCGCTTTTT 59.528 50.000 0.00 0.00 0.00 1.94
461 462 2.126071 CCCGTTCGATCACACGCT 60.126 61.111 7.93 0.00 34.98 5.07
466 467 2.466571 CCGTTCGATCACACGCTATTAC 59.533 50.000 7.93 0.00 34.98 1.89
467 468 3.360533 CGTTCGATCACACGCTATTACT 58.639 45.455 1.05 0.00 0.00 2.24
468 469 3.417969 CGTTCGATCACACGCTATTACTC 59.582 47.826 1.05 0.00 0.00 2.59
546 549 3.982576 CCATAGGGAAACATTTACGCC 57.017 47.619 0.00 0.00 35.59 5.68
547 550 3.283751 CCATAGGGAAACATTTACGCCA 58.716 45.455 0.00 0.00 35.59 5.69
548 551 3.315191 CCATAGGGAAACATTTACGCCAG 59.685 47.826 0.00 0.00 35.59 4.85
549 552 1.173913 AGGGAAACATTTACGCCAGC 58.826 50.000 0.00 0.00 0.00 4.85
550 553 0.172578 GGGAAACATTTACGCCAGCC 59.827 55.000 0.00 0.00 0.00 4.85
551 554 0.172578 GGAAACATTTACGCCAGCCC 59.827 55.000 0.00 0.00 0.00 5.19
552 555 1.173913 GAAACATTTACGCCAGCCCT 58.826 50.000 0.00 0.00 0.00 5.19
553 556 1.544246 GAAACATTTACGCCAGCCCTT 59.456 47.619 0.00 0.00 0.00 3.95
554 557 1.627864 AACATTTACGCCAGCCCTTT 58.372 45.000 0.00 0.00 0.00 3.11
555 558 0.887933 ACATTTACGCCAGCCCTTTG 59.112 50.000 0.00 0.00 0.00 2.77
556 559 0.887933 CATTTACGCCAGCCCTTTGT 59.112 50.000 0.00 0.00 0.00 2.83
557 560 1.135402 CATTTACGCCAGCCCTTTGTC 60.135 52.381 0.00 0.00 0.00 3.18
558 561 1.231958 TTTACGCCAGCCCTTTGTCG 61.232 55.000 0.00 0.00 0.00 4.35
559 562 2.102109 TTACGCCAGCCCTTTGTCGA 62.102 55.000 0.00 0.00 0.00 4.20
560 563 2.102109 TACGCCAGCCCTTTGTCGAA 62.102 55.000 0.00 0.00 0.00 3.71
561 564 2.258013 CGCCAGCCCTTTGTCGAAA 61.258 57.895 0.00 0.00 0.00 3.46
562 565 1.791103 CGCCAGCCCTTTGTCGAAAA 61.791 55.000 0.00 0.00 0.00 2.29
563 566 0.387565 GCCAGCCCTTTGTCGAAAAA 59.612 50.000 0.00 0.00 0.00 1.94
623 626 1.354040 GAGAGACGTGATGGTTGCAG 58.646 55.000 0.00 0.00 0.00 4.41
628 631 2.126734 GTGATGGTTGCAGCACGC 60.127 61.111 2.05 0.00 42.89 5.34
650 654 4.868171 GCCTAAACCCAAAATTCGAAATCC 59.132 41.667 0.00 0.00 0.00 3.01
666 670 2.493273 ATCCCCCAACCGTGCGAAAT 62.493 55.000 0.00 0.00 0.00 2.17
761 765 2.305127 CGGTCACACCCGTCGAAAC 61.305 63.158 0.00 0.00 43.07 2.78
806 811 2.042843 CCGCAGACCTAGGAGGGT 60.043 66.667 17.98 0.00 40.58 4.34
859 864 1.265454 ATATCTCGGCCGAATCCCCC 61.265 60.000 30.53 0.00 0.00 5.40
861 866 3.792736 CTCGGCCGAATCCCCCAA 61.793 66.667 30.53 2.79 0.00 4.12
862 867 4.104183 TCGGCCGAATCCCCCAAC 62.104 66.667 28.99 0.00 0.00 3.77
985 990 4.760047 GGCGGCGGAGAAGCAAGA 62.760 66.667 9.78 0.00 39.27 3.02
986 991 3.491652 GCGGCGGAGAAGCAAGAC 61.492 66.667 9.78 0.00 39.27 3.01
987 992 2.048222 CGGCGGAGAAGCAAGACA 60.048 61.111 0.00 0.00 39.27 3.41
988 993 1.667830 CGGCGGAGAAGCAAGACAA 60.668 57.895 0.00 0.00 39.27 3.18
989 994 1.630244 CGGCGGAGAAGCAAGACAAG 61.630 60.000 0.00 0.00 39.27 3.16
1077 1082 0.904865 TCCTCGCCTGGATCAACACT 60.905 55.000 0.00 0.00 0.00 3.55
1080 1085 0.535335 TCGCCTGGATCAACACTACC 59.465 55.000 0.00 0.00 0.00 3.18
1116 1121 0.964358 CCAAGGTCGAGGAGGTACGT 60.964 60.000 0.00 0.00 0.00 3.57
1117 1122 0.886563 CAAGGTCGAGGAGGTACGTT 59.113 55.000 0.00 0.00 0.00 3.99
1201 1226 2.342650 TTTTGCTGGATCTGCGGGC 61.343 57.895 0.00 0.00 0.00 6.13
1209 1234 3.228688 GATCTGCGGGCGCGATTTC 62.229 63.158 28.66 13.04 45.51 2.17
1216 1241 4.218478 GGCGCGATTTCGGTTCGG 62.218 66.667 12.10 0.00 40.23 4.30
1418 1443 2.606308 GCAGGATGTGTTCAACAAGCTG 60.606 50.000 0.00 0.00 43.61 4.24
1450 1475 1.168714 GTGCGCTCCCATTTCTTCTT 58.831 50.000 9.73 0.00 0.00 2.52
1455 1480 1.286257 GCTCCCATTTCTTCTTCCCCT 59.714 52.381 0.00 0.00 0.00 4.79
1460 1485 2.284190 CATTTCTTCTTCCCCTCTCGC 58.716 52.381 0.00 0.00 0.00 5.03
1531 2080 0.721718 GCACACGAGGATGCACTAAC 59.278 55.000 0.00 0.00 41.65 2.34
1605 2155 2.289320 ACAGACACTGAGCCATGAGTTC 60.289 50.000 5.76 0.00 35.18 3.01
1758 2372 1.135199 GCTGTGTGGAGAATTGCCATG 60.135 52.381 0.36 0.00 37.81 3.66
1829 2443 1.669779 GCACATGAGCAGTCTGGATTC 59.330 52.381 10.48 0.00 0.00 2.52
1830 2444 2.680221 GCACATGAGCAGTCTGGATTCT 60.680 50.000 10.48 0.00 0.00 2.40
1831 2445 3.607741 CACATGAGCAGTCTGGATTCTT 58.392 45.455 0.00 0.00 0.00 2.52
1832 2446 4.763073 CACATGAGCAGTCTGGATTCTTA 58.237 43.478 0.00 0.00 0.00 2.10
1833 2447 5.366460 CACATGAGCAGTCTGGATTCTTAT 58.634 41.667 0.00 0.00 0.00 1.73
1834 2448 5.821470 CACATGAGCAGTCTGGATTCTTATT 59.179 40.000 0.00 0.00 0.00 1.40
1835 2449 5.821470 ACATGAGCAGTCTGGATTCTTATTG 59.179 40.000 0.00 0.00 0.00 1.90
1836 2450 5.682234 TGAGCAGTCTGGATTCTTATTGA 57.318 39.130 1.14 0.00 0.00 2.57
1837 2451 5.668471 TGAGCAGTCTGGATTCTTATTGAG 58.332 41.667 1.14 0.00 0.00 3.02
1838 2452 5.033589 AGCAGTCTGGATTCTTATTGAGG 57.966 43.478 1.14 0.00 0.00 3.86
1839 2453 4.718774 AGCAGTCTGGATTCTTATTGAGGA 59.281 41.667 1.14 0.00 0.00 3.71
1840 2454 5.369110 AGCAGTCTGGATTCTTATTGAGGAT 59.631 40.000 1.14 0.00 0.00 3.24
1841 2455 6.556495 AGCAGTCTGGATTCTTATTGAGGATA 59.444 38.462 1.14 0.00 0.00 2.59
1842 2456 7.237263 AGCAGTCTGGATTCTTATTGAGGATAT 59.763 37.037 1.14 0.00 0.00 1.63
1843 2457 7.548780 GCAGTCTGGATTCTTATTGAGGATATC 59.451 40.741 1.14 0.00 0.00 1.63
1844 2458 8.040132 CAGTCTGGATTCTTATTGAGGATATCC 58.960 40.741 14.41 14.41 33.02 2.59
1863 2477 9.761504 GGATATCCTTACTTGTTAAGTACTTCC 57.238 37.037 12.39 4.83 43.30 3.46
1868 2482 8.755977 TCCTTACTTGTTAAGTACTTCCATAGG 58.244 37.037 12.39 13.02 43.30 2.57
1869 2483 7.985752 CCTTACTTGTTAAGTACTTCCATAGGG 59.014 40.741 12.39 6.92 43.30 3.53
1870 2484 8.669055 TTACTTGTTAAGTACTTCCATAGGGA 57.331 34.615 12.39 0.00 43.30 4.20
1871 2485 6.944096 ACTTGTTAAGTACTTCCATAGGGAC 58.056 40.000 12.39 0.79 41.01 4.46
1872 2486 6.729569 ACTTGTTAAGTACTTCCATAGGGACT 59.270 38.462 12.39 0.00 41.01 3.85
1873 2487 7.897565 ACTTGTTAAGTACTTCCATAGGGACTA 59.102 37.037 12.39 0.00 42.77 2.59
2037 2651 8.718656 AGCATATCCTTACTTCTTGTTATTCCT 58.281 33.333 0.00 0.00 0.00 3.36
2046 2660 6.712276 ACTTCTTGTTATTCCTTAGGGACTG 58.288 40.000 0.00 0.00 42.05 3.51
2065 2679 7.174946 AGGGACTGTTAATGTAACTGAACATTG 59.825 37.037 17.33 7.97 43.31 2.82
2090 2704 0.376852 TTTTGTCACTGTCGCAGCAC 59.623 50.000 6.74 5.14 34.37 4.40
2096 2710 0.165295 CACTGTCGCAGCACATTGAG 59.835 55.000 6.74 0.00 34.37 3.02
2099 2713 0.534877 TGTCGCAGCACATTGAGGTT 60.535 50.000 0.00 0.00 0.00 3.50
2233 2847 6.997655 TCTTTCTGTAGCATATATGACCAGG 58.002 40.000 17.10 6.16 0.00 4.45
2717 3417 4.081309 ACCGGTAAGTAGCAGAAATGCTTA 60.081 41.667 4.49 0.00 43.52 3.09
2727 3427 5.259632 AGCAGAAATGCTTAACCATTCTCT 58.740 37.500 0.00 1.13 43.52 3.10
2730 3430 6.969473 GCAGAAATGCTTAACCATTCTCTTAC 59.031 38.462 0.00 0.00 34.50 2.34
2732 3432 9.383519 CAGAAATGCTTAACCATTCTCTTACTA 57.616 33.333 0.00 0.00 34.50 1.82
2733 3433 9.606631 AGAAATGCTTAACCATTCTCTTACTAG 57.393 33.333 0.00 0.00 34.50 2.57
2735 3435 5.671493 TGCTTAACCATTCTCTTACTAGGC 58.329 41.667 0.00 0.00 0.00 3.93
2737 3437 2.892784 ACCATTCTCTTACTAGGCGC 57.107 50.000 0.00 0.00 0.00 6.53
2739 3439 1.689273 CCATTCTCTTACTAGGCGCCT 59.311 52.381 34.85 34.85 0.00 5.52
2741 3441 0.460311 TTCTCTTACTAGGCGCCTGC 59.540 55.000 38.98 6.62 41.71 4.85
2787 3551 6.524101 AAAAAGCCTTCTGAACAAGTGTAA 57.476 33.333 0.00 0.00 0.00 2.41
2919 3683 9.430838 CAATGTTGACGATGAAATCTTTATCTC 57.569 33.333 0.00 0.00 42.58 2.75
2939 3703 1.242076 GTGTGCAGATTGTGAAGGCT 58.758 50.000 0.00 0.00 0.00 4.58
3065 3829 3.866582 CCCATCCTGGAGGCGTCC 61.867 72.222 18.69 18.69 40.96 4.79
3287 4051 0.112995 AATTGCAGGGGCTGAGTTGA 59.887 50.000 0.00 0.00 41.91 3.18
3348 4112 3.982058 TGTTTCGTTTGTTGTTTGGTGTC 59.018 39.130 0.00 0.00 0.00 3.67
3491 4255 0.322975 TGTTCCTTGCTCTGCCTCTC 59.677 55.000 0.00 0.00 0.00 3.20
3519 4283 3.430895 GCAAGACGGTCTGTTTTCGATTA 59.569 43.478 12.12 0.00 0.00 1.75
3542 4306 0.607489 AAAGGTTGCTGCGCTCTGAT 60.607 50.000 9.73 0.00 0.00 2.90
3586 4350 4.406456 TGGAATACAAATTCTGTGCTGGT 58.594 39.130 4.24 0.00 41.18 4.00
3667 4432 1.220749 GCTCGACCAACCTGCCATA 59.779 57.895 0.00 0.00 0.00 2.74
3670 4483 2.868044 GCTCGACCAACCTGCCATATAG 60.868 54.545 0.00 0.00 0.00 1.31
3683 4496 3.198409 CCATATAGTGTGCTGGCAAGA 57.802 47.619 0.00 0.00 0.00 3.02
3684 4497 2.874701 CCATATAGTGTGCTGGCAAGAC 59.125 50.000 0.00 0.00 0.00 3.01
3685 4498 3.534554 CATATAGTGTGCTGGCAAGACA 58.465 45.455 0.00 0.00 0.00 3.41
3686 4499 2.105006 ATAGTGTGCTGGCAAGACAG 57.895 50.000 0.00 0.00 41.41 3.51
3693 4506 2.261215 CTGGCAAGACAGCTTTCCC 58.739 57.895 0.00 0.00 36.70 3.97
3694 4507 0.538057 CTGGCAAGACAGCTTTCCCA 60.538 55.000 0.00 0.00 36.70 4.37
3695 4508 0.112995 TGGCAAGACAGCTTTCCCAT 59.887 50.000 0.00 0.00 36.70 4.00
3696 4509 0.813821 GGCAAGACAGCTTTCCCATC 59.186 55.000 0.00 0.00 32.07 3.51
3697 4510 1.538047 GCAAGACAGCTTTCCCATCA 58.462 50.000 0.00 0.00 30.14 3.07
3698 4511 2.097825 GCAAGACAGCTTTCCCATCAT 58.902 47.619 0.00 0.00 30.14 2.45
3699 4512 2.098770 GCAAGACAGCTTTCCCATCATC 59.901 50.000 0.00 0.00 30.14 2.92
3700 4513 3.349927 CAAGACAGCTTTCCCATCATCA 58.650 45.455 0.00 0.00 30.14 3.07
3701 4514 3.726557 AGACAGCTTTCCCATCATCAA 57.273 42.857 0.00 0.00 0.00 2.57
3702 4515 3.618351 AGACAGCTTTCCCATCATCAAG 58.382 45.455 0.00 0.00 0.00 3.02
3703 4516 2.686915 GACAGCTTTCCCATCATCAAGG 59.313 50.000 0.00 0.00 0.00 3.61
3704 4517 2.029623 CAGCTTTCCCATCATCAAGGG 58.970 52.381 0.00 0.00 46.90 3.95
3705 4518 0.749049 GCTTTCCCATCATCAAGGGC 59.251 55.000 0.00 0.00 45.07 5.19
3706 4519 1.406903 CTTTCCCATCATCAAGGGCC 58.593 55.000 0.00 0.00 45.07 5.80
3707 4520 1.009997 TTTCCCATCATCAAGGGCCT 58.990 50.000 0.00 0.00 45.07 5.19
3708 4521 1.009997 TTCCCATCATCAAGGGCCTT 58.990 50.000 14.48 14.48 45.07 4.35
3709 4522 0.259647 TCCCATCATCAAGGGCCTTG 59.740 55.000 35.44 35.44 45.07 3.61
3710 4523 0.032813 CCCATCATCAAGGGCCTTGT 60.033 55.000 37.83 25.43 41.66 3.16
3711 4524 1.108776 CCATCATCAAGGGCCTTGTG 58.891 55.000 37.83 32.40 41.66 3.33
3712 4525 0.458669 CATCATCAAGGGCCTTGTGC 59.541 55.000 37.83 0.00 41.66 4.57
3713 4526 0.333993 ATCATCAAGGGCCTTGTGCT 59.666 50.000 37.83 25.38 41.66 4.40
3714 4527 0.609957 TCATCAAGGGCCTTGTGCTG 60.610 55.000 37.83 31.11 41.66 4.41
3715 4528 1.304713 ATCAAGGGCCTTGTGCTGG 60.305 57.895 37.83 17.92 41.66 4.85
3716 4529 2.085343 ATCAAGGGCCTTGTGCTGGT 62.085 55.000 37.83 13.97 41.66 4.00
3717 4530 2.203538 AAGGGCCTTGTGCTGGTG 60.204 61.111 20.19 0.00 40.92 4.17
3718 4531 3.815407 AAGGGCCTTGTGCTGGTGG 62.815 63.158 20.19 0.00 40.92 4.61
3719 4532 4.284550 GGGCCTTGTGCTGGTGGA 62.285 66.667 0.84 0.00 40.92 4.02
3720 4533 2.674380 GGCCTTGTGCTGGTGGAG 60.674 66.667 0.00 0.00 40.92 3.86
3721 4534 2.674380 GCCTTGTGCTGGTGGAGG 60.674 66.667 0.00 0.00 36.87 4.30
3722 4535 2.034687 CCTTGTGCTGGTGGAGGG 59.965 66.667 0.00 0.00 0.00 4.30
3723 4536 2.528818 CCTTGTGCTGGTGGAGGGA 61.529 63.158 0.00 0.00 0.00 4.20
3724 4537 1.302832 CTTGTGCTGGTGGAGGGAC 60.303 63.158 0.00 0.00 0.00 4.46
3752 4565 7.977789 TGAAGCAGTTCACAATAGATACAAA 57.022 32.000 0.00 0.00 37.79 2.83
3753 4566 8.565896 TGAAGCAGTTCACAATAGATACAAAT 57.434 30.769 0.00 0.00 37.79 2.32
3754 4567 8.453320 TGAAGCAGTTCACAATAGATACAAATG 58.547 33.333 0.00 0.00 37.79 2.32
3755 4568 6.789262 AGCAGTTCACAATAGATACAAATGC 58.211 36.000 0.00 0.00 0.00 3.56
3756 4569 5.973565 GCAGTTCACAATAGATACAAATGCC 59.026 40.000 0.00 0.00 0.00 4.40
3757 4570 6.183360 GCAGTTCACAATAGATACAAATGCCT 60.183 38.462 0.00 0.00 0.00 4.75
3934 4776 2.096013 GCAAGAAGGCGTTGAAGTATCC 59.904 50.000 0.00 0.00 0.00 2.59
3942 4784 2.483188 GCGTTGAAGTATCCGGGAAGAT 60.483 50.000 0.00 0.00 0.00 2.40
3945 4787 5.353938 CGTTGAAGTATCCGGGAAGATTTA 58.646 41.667 0.00 0.00 0.00 1.40
3974 4816 9.177608 CTGAGGATTCAGGTTGTATTTTGATTA 57.822 33.333 0.00 0.00 45.79 1.75
3983 4825 7.641411 CAGGTTGTATTTTGATTATCTTCTGCG 59.359 37.037 0.00 0.00 0.00 5.18
4010 4852 5.460419 GGCGTCTCTCAGTTATCTGTTTATG 59.540 44.000 0.83 0.00 41.91 1.90
4013 4855 7.701078 GCGTCTCTCAGTTATCTGTTTATGTTA 59.299 37.037 0.83 0.00 41.91 2.41
4014 4856 9.011407 CGTCTCTCAGTTATCTGTTTATGTTAC 57.989 37.037 0.83 0.00 41.91 2.50
4049 4891 2.878406 ACTGTCGTTTTCACCATTGAGG 59.122 45.455 0.00 0.00 45.67 3.86
4226 5068 6.072838 TCACACTTTGATTCTCTTCTGCATTC 60.073 38.462 0.00 0.00 0.00 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 4.056125 TCGTCGTCCCTGCTGCAG 62.056 66.667 22.44 22.44 0.00 4.41
47 48 4.357947 GTCGTCGTCCCTGCTGCA 62.358 66.667 0.88 0.88 0.00 4.41
49 50 4.778415 CCGTCGTCGTCCCTGCTG 62.778 72.222 0.71 0.00 35.01 4.41
80 81 4.840554 ATCGTCGTCGTCGTCGCG 62.841 66.667 15.28 16.97 44.86 5.87
81 82 2.944662 ATCATCGTCGTCGTCGTCGC 62.945 60.000 15.28 2.24 44.86 5.19
82 83 1.012562 ATCATCGTCGTCGTCGTCG 60.013 57.895 14.18 14.18 46.06 5.12
83 84 0.924363 CCATCATCGTCGTCGTCGTC 60.924 60.000 11.41 0.00 38.33 4.20
84 85 1.062047 CCATCATCGTCGTCGTCGT 59.938 57.895 11.41 0.00 38.33 4.34
85 86 2.286559 GCCATCATCGTCGTCGTCG 61.287 63.158 5.50 5.50 38.33 5.12
86 87 2.286559 CGCCATCATCGTCGTCGTC 61.287 63.158 1.33 0.00 38.33 4.20
87 88 2.277949 CGCCATCATCGTCGTCGT 60.278 61.111 1.33 0.00 38.33 4.34
88 89 2.024163 TCGCCATCATCGTCGTCG 59.976 61.111 0.00 0.00 38.55 5.12
89 90 2.286559 CGTCGCCATCATCGTCGTC 61.287 63.158 0.00 0.00 34.78 4.20
90 91 2.277949 CGTCGCCATCATCGTCGT 60.278 61.111 0.00 0.00 34.78 4.34
91 92 3.024609 CCGTCGCCATCATCGTCG 61.025 66.667 0.00 0.00 37.98 5.12
92 93 3.330853 GCCGTCGCCATCATCGTC 61.331 66.667 0.00 0.00 0.00 4.20
94 95 4.923710 TCGCCGTCGCCATCATCG 62.924 66.667 0.00 0.00 35.26 3.84
95 96 3.330853 GTCGCCGTCGCCATCATC 61.331 66.667 0.00 0.00 35.26 2.92
96 97 3.838271 AGTCGCCGTCGCCATCAT 61.838 61.111 0.00 0.00 35.26 2.45
97 98 4.794439 CAGTCGCCGTCGCCATCA 62.794 66.667 0.00 0.00 35.26 3.07
109 110 1.805945 GTAGAAGCGGGTGCAGTCG 60.806 63.158 4.45 4.45 46.23 4.18
110 111 0.737715 CTGTAGAAGCGGGTGCAGTC 60.738 60.000 0.00 0.00 46.23 3.51
111 112 1.185618 TCTGTAGAAGCGGGTGCAGT 61.186 55.000 0.00 0.00 46.23 4.40
112 113 0.737715 GTCTGTAGAAGCGGGTGCAG 60.738 60.000 0.00 0.00 46.23 4.41
113 114 1.185618 AGTCTGTAGAAGCGGGTGCA 61.186 55.000 0.00 0.00 46.23 4.57
114 115 0.037232 AAGTCTGTAGAAGCGGGTGC 60.037 55.000 0.00 0.00 43.24 5.01
115 116 2.457366 AAAGTCTGTAGAAGCGGGTG 57.543 50.000 0.00 0.00 0.00 4.61
116 117 2.609737 CGAAAAGTCTGTAGAAGCGGGT 60.610 50.000 0.00 0.00 0.00 5.28
117 118 1.993370 CGAAAAGTCTGTAGAAGCGGG 59.007 52.381 0.00 0.00 0.00 6.13
118 119 2.662156 GTCGAAAAGTCTGTAGAAGCGG 59.338 50.000 0.00 0.00 0.00 5.52
119 120 3.305964 TGTCGAAAAGTCTGTAGAAGCG 58.694 45.455 0.00 0.00 0.00 4.68
120 121 4.686554 ACATGTCGAAAAGTCTGTAGAAGC 59.313 41.667 0.00 0.00 0.00 3.86
121 122 7.271653 GTCTACATGTCGAAAAGTCTGTAGAAG 59.728 40.741 15.23 0.00 43.75 2.85
122 123 7.082602 GTCTACATGTCGAAAAGTCTGTAGAA 58.917 38.462 15.23 2.06 43.75 2.10
123 124 6.609533 GTCTACATGTCGAAAAGTCTGTAGA 58.390 40.000 11.20 11.20 41.45 2.59
124 125 5.508573 CGTCTACATGTCGAAAAGTCTGTAG 59.491 44.000 0.00 7.50 38.14 2.74
125 126 5.179929 TCGTCTACATGTCGAAAAGTCTGTA 59.820 40.000 0.00 0.00 33.73 2.74
126 127 4.023450 TCGTCTACATGTCGAAAAGTCTGT 60.023 41.667 0.00 0.00 33.73 3.41
127 128 4.321217 GTCGTCTACATGTCGAAAAGTCTG 59.679 45.833 0.00 0.00 37.89 3.51
128 129 4.474113 GTCGTCTACATGTCGAAAAGTCT 58.526 43.478 0.00 0.00 37.89 3.24
129 130 3.297461 CGTCGTCTACATGTCGAAAAGTC 59.703 47.826 0.00 0.00 37.89 3.01
130 131 3.058708 TCGTCGTCTACATGTCGAAAAGT 60.059 43.478 0.00 0.00 37.89 2.66
131 132 3.297461 GTCGTCGTCTACATGTCGAAAAG 59.703 47.826 0.00 0.00 37.89 2.27
132 133 3.228749 GTCGTCGTCTACATGTCGAAAA 58.771 45.455 0.00 0.00 37.89 2.29
133 134 2.722706 CGTCGTCGTCTACATGTCGAAA 60.723 50.000 0.00 0.00 37.89 3.46
134 135 1.201845 CGTCGTCGTCTACATGTCGAA 60.202 52.381 0.00 0.00 37.89 3.71
135 136 0.367887 CGTCGTCGTCTACATGTCGA 59.632 55.000 0.00 2.18 34.21 4.20
136 137 1.186339 GCGTCGTCGTCTACATGTCG 61.186 60.000 0.00 0.00 39.49 4.35
137 138 0.096628 AGCGTCGTCGTCTACATGTC 59.903 55.000 0.00 0.00 39.49 3.06
138 139 0.179197 CAGCGTCGTCGTCTACATGT 60.179 55.000 2.69 2.69 39.49 3.21
139 140 0.861866 CCAGCGTCGTCGTCTACATG 60.862 60.000 3.66 0.00 39.49 3.21
140 141 1.428219 CCAGCGTCGTCGTCTACAT 59.572 57.895 3.66 0.00 39.49 2.29
141 142 2.865308 CCAGCGTCGTCGTCTACA 59.135 61.111 3.66 0.00 39.49 2.74
142 143 1.699656 TAGCCAGCGTCGTCGTCTAC 61.700 60.000 3.66 0.00 39.49 2.59
143 144 1.426816 CTAGCCAGCGTCGTCGTCTA 61.427 60.000 3.66 0.78 39.49 2.59
144 145 2.745100 TAGCCAGCGTCGTCGTCT 60.745 61.111 3.66 0.00 39.49 4.18
145 146 2.277373 CTAGCCAGCGTCGTCGTC 60.277 66.667 3.66 0.00 39.49 4.20
146 147 3.812019 CCTAGCCAGCGTCGTCGT 61.812 66.667 3.66 0.00 39.49 4.34
148 149 2.837371 AAAGCCTAGCCAGCGTCGTC 62.837 60.000 0.00 0.00 34.64 4.20
149 150 2.450479 AAAAGCCTAGCCAGCGTCGT 62.450 55.000 0.00 0.00 34.64 4.34
150 151 0.459585 TAAAAGCCTAGCCAGCGTCG 60.460 55.000 0.00 0.00 34.64 5.12
151 152 1.291132 CTAAAAGCCTAGCCAGCGTC 58.709 55.000 0.00 0.00 34.64 5.19
152 153 0.613777 ACTAAAAGCCTAGCCAGCGT 59.386 50.000 0.00 0.00 34.64 5.07
153 154 1.739067 AACTAAAAGCCTAGCCAGCG 58.261 50.000 0.00 0.00 34.64 5.18
154 155 2.164422 CCAAACTAAAAGCCTAGCCAGC 59.836 50.000 0.00 0.00 0.00 4.85
155 156 2.164422 GCCAAACTAAAAGCCTAGCCAG 59.836 50.000 0.00 0.00 0.00 4.85
156 157 2.167662 GCCAAACTAAAAGCCTAGCCA 58.832 47.619 0.00 0.00 0.00 4.75
157 158 1.132453 CGCCAAACTAAAAGCCTAGCC 59.868 52.381 0.00 0.00 0.00 3.93
158 159 1.810755 ACGCCAAACTAAAAGCCTAGC 59.189 47.619 0.00 0.00 0.00 3.42
159 160 5.813080 ATTACGCCAAACTAAAAGCCTAG 57.187 39.130 0.00 0.00 0.00 3.02
160 161 6.316890 CCTAATTACGCCAAACTAAAAGCCTA 59.683 38.462 0.00 0.00 0.00 3.93
161 162 5.124936 CCTAATTACGCCAAACTAAAAGCCT 59.875 40.000 0.00 0.00 0.00 4.58
162 163 5.337554 CCTAATTACGCCAAACTAAAAGCC 58.662 41.667 0.00 0.00 0.00 4.35
163 164 4.796830 GCCTAATTACGCCAAACTAAAAGC 59.203 41.667 0.00 0.00 0.00 3.51
164 165 5.025826 CGCCTAATTACGCCAAACTAAAAG 58.974 41.667 1.51 0.00 0.00 2.27
165 166 4.455190 ACGCCTAATTACGCCAAACTAAAA 59.545 37.500 1.51 0.00 0.00 1.52
166 167 4.002316 ACGCCTAATTACGCCAAACTAAA 58.998 39.130 1.51 0.00 0.00 1.85
167 168 3.371591 CACGCCTAATTACGCCAAACTAA 59.628 43.478 1.51 0.00 0.00 2.24
168 169 2.931325 CACGCCTAATTACGCCAAACTA 59.069 45.455 1.51 0.00 0.00 2.24
169 170 1.735571 CACGCCTAATTACGCCAAACT 59.264 47.619 1.51 0.00 0.00 2.66
170 171 1.202098 CCACGCCTAATTACGCCAAAC 60.202 52.381 1.51 0.00 0.00 2.93
171 172 1.088306 CCACGCCTAATTACGCCAAA 58.912 50.000 1.51 0.00 0.00 3.28
172 173 0.036199 ACCACGCCTAATTACGCCAA 60.036 50.000 1.51 0.00 0.00 4.52
173 174 0.036199 AACCACGCCTAATTACGCCA 60.036 50.000 1.51 0.00 0.00 5.69
174 175 1.089112 AAACCACGCCTAATTACGCC 58.911 50.000 1.51 0.00 0.00 5.68
175 176 1.792632 GCAAACCACGCCTAATTACGC 60.793 52.381 0.00 0.00 0.00 4.42
176 177 1.465387 TGCAAACCACGCCTAATTACG 59.535 47.619 0.00 0.00 0.00 3.18
177 178 3.119637 ACATGCAAACCACGCCTAATTAC 60.120 43.478 0.00 0.00 0.00 1.89
178 179 3.085533 ACATGCAAACCACGCCTAATTA 58.914 40.909 0.00 0.00 0.00 1.40
179 180 1.892474 ACATGCAAACCACGCCTAATT 59.108 42.857 0.00 0.00 0.00 1.40
180 181 1.202114 CACATGCAAACCACGCCTAAT 59.798 47.619 0.00 0.00 0.00 1.73
181 182 0.595588 CACATGCAAACCACGCCTAA 59.404 50.000 0.00 0.00 0.00 2.69
182 183 0.536233 ACACATGCAAACCACGCCTA 60.536 50.000 0.00 0.00 0.00 3.93
183 184 1.391157 AACACATGCAAACCACGCCT 61.391 50.000 0.00 0.00 0.00 5.52
184 185 0.529555 AAACACATGCAAACCACGCC 60.530 50.000 0.00 0.00 0.00 5.68
185 186 1.285578 AAAACACATGCAAACCACGC 58.714 45.000 0.00 0.00 0.00 5.34
186 187 4.047822 ACATAAAACACATGCAAACCACG 58.952 39.130 0.00 0.00 0.00 4.94
187 188 5.982465 AACATAAAACACATGCAAACCAC 57.018 34.783 0.00 0.00 0.00 4.16
188 189 6.992063 AAAACATAAAACACATGCAAACCA 57.008 29.167 0.00 0.00 0.00 3.67
213 214 9.173021 TCGGTGATACTTCATTGAAATTTGTAT 57.827 29.630 0.00 8.12 33.56 2.29
214 215 8.554835 TCGGTGATACTTCATTGAAATTTGTA 57.445 30.769 0.00 0.25 33.56 2.41
215 216 7.174946 ACTCGGTGATACTTCATTGAAATTTGT 59.825 33.333 0.00 0.00 33.56 2.83
216 217 7.530010 ACTCGGTGATACTTCATTGAAATTTG 58.470 34.615 0.00 0.00 33.56 2.32
217 218 7.687941 ACTCGGTGATACTTCATTGAAATTT 57.312 32.000 0.01 0.00 33.56 1.82
218 219 7.687941 AACTCGGTGATACTTCATTGAAATT 57.312 32.000 0.01 0.00 33.56 1.82
219 220 7.174946 ACAAACTCGGTGATACTTCATTGAAAT 59.825 33.333 0.01 0.00 33.56 2.17
220 221 6.485313 ACAAACTCGGTGATACTTCATTGAAA 59.515 34.615 0.01 0.00 33.56 2.69
221 222 5.995282 ACAAACTCGGTGATACTTCATTGAA 59.005 36.000 0.00 0.00 33.56 2.69
222 223 5.408299 CACAAACTCGGTGATACTTCATTGA 59.592 40.000 0.00 0.00 38.54 2.57
223 224 5.179368 ACACAAACTCGGTGATACTTCATTG 59.821 40.000 0.00 0.00 39.53 2.82
224 225 5.305585 ACACAAACTCGGTGATACTTCATT 58.694 37.500 0.00 0.00 39.53 2.57
225 226 4.894784 ACACAAACTCGGTGATACTTCAT 58.105 39.130 0.00 0.00 39.53 2.57
226 227 4.330944 ACACAAACTCGGTGATACTTCA 57.669 40.909 0.00 0.00 39.53 3.02
227 228 6.774354 TTTACACAAACTCGGTGATACTTC 57.226 37.500 0.00 0.00 39.53 3.01
228 229 7.556733 TTTTTACACAAACTCGGTGATACTT 57.443 32.000 0.00 0.00 39.53 2.24
229 230 7.359765 CGATTTTTACACAAACTCGGTGATACT 60.360 37.037 0.00 0.00 39.53 2.12
230 231 6.735063 CGATTTTTACACAAACTCGGTGATAC 59.265 38.462 0.00 0.00 39.53 2.24
231 232 6.619018 GCGATTTTTACACAAACTCGGTGATA 60.619 38.462 8.54 0.00 39.53 2.15
232 233 5.685841 CGATTTTTACACAAACTCGGTGAT 58.314 37.500 0.00 0.00 39.53 3.06
233 234 4.553156 GCGATTTTTACACAAACTCGGTGA 60.553 41.667 8.54 0.00 39.53 4.02
234 235 3.662186 GCGATTTTTACACAAACTCGGTG 59.338 43.478 8.54 0.00 41.95 4.94
235 236 3.304190 GGCGATTTTTACACAAACTCGGT 60.304 43.478 8.54 0.00 33.11 4.69
236 237 3.231160 GGCGATTTTTACACAAACTCGG 58.769 45.455 8.54 0.00 33.11 4.63
237 238 2.900046 CGGCGATTTTTACACAAACTCG 59.100 45.455 0.00 3.48 34.50 4.18
238 239 4.136517 TCGGCGATTTTTACACAAACTC 57.863 40.909 4.99 0.00 0.00 3.01
239 240 3.562557 ACTCGGCGATTTTTACACAAACT 59.437 39.130 11.27 0.00 0.00 2.66
240 241 3.880610 ACTCGGCGATTTTTACACAAAC 58.119 40.909 11.27 0.00 0.00 2.93
241 242 4.555348 AACTCGGCGATTTTTACACAAA 57.445 36.364 11.27 0.00 0.00 2.83
242 243 4.283678 CAAACTCGGCGATTTTTACACAA 58.716 39.130 20.55 0.00 0.00 3.33
243 244 3.850374 GCAAACTCGGCGATTTTTACACA 60.850 43.478 20.55 0.00 0.00 3.72
244 245 2.655001 GCAAACTCGGCGATTTTTACAC 59.345 45.455 20.55 8.71 0.00 2.90
245 246 2.290916 TGCAAACTCGGCGATTTTTACA 59.709 40.909 20.55 18.12 0.00 2.41
246 247 2.923643 TGCAAACTCGGCGATTTTTAC 58.076 42.857 20.55 16.10 0.00 2.01
247 248 3.627732 TTGCAAACTCGGCGATTTTTA 57.372 38.095 20.55 11.31 0.00 1.52
248 249 2.500509 TTGCAAACTCGGCGATTTTT 57.499 40.000 20.55 15.04 0.00 1.94
249 250 2.500509 TTTGCAAACTCGGCGATTTT 57.499 40.000 17.94 17.94 0.00 1.82
250 251 2.500509 TTTTGCAAACTCGGCGATTT 57.499 40.000 12.39 8.70 0.00 2.17
251 252 2.500509 TTTTTGCAAACTCGGCGATT 57.499 40.000 12.39 0.37 0.00 3.34
252 253 2.723124 ATTTTTGCAAACTCGGCGAT 57.277 40.000 12.39 0.00 0.00 4.58
253 254 2.500509 AATTTTTGCAAACTCGGCGA 57.499 40.000 12.39 10.14 0.00 5.54
254 255 2.537625 TCAAATTTTTGCAAACTCGGCG 59.462 40.909 12.39 0.00 38.05 6.46
255 256 4.528531 TTCAAATTTTTGCAAACTCGGC 57.471 36.364 12.39 0.00 38.05 5.54
256 257 6.284475 TCATTCAAATTTTTGCAAACTCGG 57.716 33.333 12.39 1.12 38.05 4.63
257 258 8.770850 ATTTCATTCAAATTTTTGCAAACTCG 57.229 26.923 12.39 0.00 38.05 4.18
261 262 9.327529 GCGATATTTCATTCAAATTTTTGCAAA 57.672 25.926 8.05 8.05 38.05 3.68
262 263 7.961827 GGCGATATTTCATTCAAATTTTTGCAA 59.038 29.630 0.00 0.00 38.05 4.08
263 264 7.462731 GGCGATATTTCATTCAAATTTTTGCA 58.537 30.769 0.00 0.00 38.05 4.08
264 265 6.624526 CGGCGATATTTCATTCAAATTTTTGC 59.375 34.615 0.00 0.00 38.05 3.68
265 266 7.893824 TCGGCGATATTTCATTCAAATTTTTG 58.106 30.769 4.99 0.00 36.09 2.44
266 267 8.379902 GTTCGGCGATATTTCATTCAAATTTTT 58.620 29.630 11.76 0.00 36.09 1.94
267 268 7.010091 GGTTCGGCGATATTTCATTCAAATTTT 59.990 33.333 11.76 0.00 36.09 1.82
268 269 6.475402 GGTTCGGCGATATTTCATTCAAATTT 59.525 34.615 11.76 0.00 36.09 1.82
269 270 5.977129 GGTTCGGCGATATTTCATTCAAATT 59.023 36.000 11.76 0.00 36.09 1.82
270 271 5.507315 GGGTTCGGCGATATTTCATTCAAAT 60.507 40.000 11.76 0.00 38.35 2.32
271 272 4.201970 GGGTTCGGCGATATTTCATTCAAA 60.202 41.667 11.76 0.00 0.00 2.69
272 273 3.314080 GGGTTCGGCGATATTTCATTCAA 59.686 43.478 11.76 0.00 0.00 2.69
273 274 2.875933 GGGTTCGGCGATATTTCATTCA 59.124 45.455 11.76 0.00 0.00 2.57
274 275 2.096417 CGGGTTCGGCGATATTTCATTC 60.096 50.000 11.76 0.00 0.00 2.67
275 276 1.871039 CGGGTTCGGCGATATTTCATT 59.129 47.619 11.76 0.00 0.00 2.57
276 277 1.508632 CGGGTTCGGCGATATTTCAT 58.491 50.000 11.76 0.00 0.00 2.57
277 278 1.155424 GCGGGTTCGGCGATATTTCA 61.155 55.000 11.76 0.00 36.79 2.69
278 279 1.155424 TGCGGGTTCGGCGATATTTC 61.155 55.000 11.76 0.97 36.79 2.17
279 280 0.745128 TTGCGGGTTCGGCGATATTT 60.745 50.000 11.76 0.00 36.79 1.40
280 281 1.153329 TTGCGGGTTCGGCGATATT 60.153 52.632 11.76 0.00 36.79 1.28
281 282 1.885850 GTTGCGGGTTCGGCGATAT 60.886 57.895 11.76 0.00 36.79 1.63
282 283 2.509786 GTTGCGGGTTCGGCGATA 60.510 61.111 11.76 0.00 36.79 2.92
287 288 2.663852 AAGTCGTTGCGGGTTCGG 60.664 61.111 0.00 0.00 36.79 4.30
288 289 2.241880 ACAAGTCGTTGCGGGTTCG 61.242 57.895 0.00 0.00 37.14 3.95
289 290 1.278637 CACAAGTCGTTGCGGGTTC 59.721 57.895 0.00 0.00 37.14 3.62
290 291 2.184167 CCACAAGTCGTTGCGGGTT 61.184 57.895 0.00 0.00 37.14 4.11
291 292 2.590575 CCACAAGTCGTTGCGGGT 60.591 61.111 0.00 0.00 37.14 5.28
293 294 4.025401 GCCCACAAGTCGTTGCGG 62.025 66.667 0.00 0.00 37.14 5.69
294 295 4.025401 GGCCCACAAGTCGTTGCG 62.025 66.667 0.00 0.00 37.14 4.85
295 296 2.485795 TTGGCCCACAAGTCGTTGC 61.486 57.895 0.00 0.00 37.14 4.17
296 297 1.358759 GTTGGCCCACAAGTCGTTG 59.641 57.895 0.00 0.00 40.38 4.10
297 298 2.184167 CGTTGGCCCACAAGTCGTT 61.184 57.895 7.86 0.00 40.38 3.85
298 299 2.590575 CGTTGGCCCACAAGTCGT 60.591 61.111 7.86 0.00 40.38 4.34
299 300 2.280524 TCGTTGGCCCACAAGTCG 60.281 61.111 7.86 0.00 40.38 4.18
300 301 0.034337 TAGTCGTTGGCCCACAAGTC 59.966 55.000 7.86 0.00 40.38 3.01
301 302 0.034896 CTAGTCGTTGGCCCACAAGT 59.965 55.000 7.86 0.00 40.38 3.16
302 303 0.320374 TCTAGTCGTTGGCCCACAAG 59.680 55.000 7.86 0.00 40.38 3.16
303 304 0.759959 TTCTAGTCGTTGGCCCACAA 59.240 50.000 7.86 0.00 36.54 3.33
304 305 0.759959 TTTCTAGTCGTTGGCCCACA 59.240 50.000 7.86 0.00 0.00 4.17
305 306 1.737793 CATTTCTAGTCGTTGGCCCAC 59.262 52.381 0.00 0.00 0.00 4.61
306 307 1.626321 TCATTTCTAGTCGTTGGCCCA 59.374 47.619 0.00 0.00 0.00 5.36
307 308 2.396590 TCATTTCTAGTCGTTGGCCC 57.603 50.000 0.00 0.00 0.00 5.80
308 309 3.335579 ACTTCATTTCTAGTCGTTGGCC 58.664 45.455 0.00 0.00 0.00 5.36
309 310 6.238130 GGATTACTTCATTTCTAGTCGTTGGC 60.238 42.308 0.00 0.00 0.00 4.52
310 311 7.042335 AGGATTACTTCATTTCTAGTCGTTGG 58.958 38.462 0.00 0.00 0.00 3.77
311 312 7.759886 TGAGGATTACTTCATTTCTAGTCGTTG 59.240 37.037 0.00 0.00 0.00 4.10
312 313 7.837863 TGAGGATTACTTCATTTCTAGTCGTT 58.162 34.615 0.00 0.00 0.00 3.85
313 314 7.339721 TCTGAGGATTACTTCATTTCTAGTCGT 59.660 37.037 0.00 0.00 31.98 4.34
314 315 7.708051 TCTGAGGATTACTTCATTTCTAGTCG 58.292 38.462 0.00 0.00 31.98 4.18
315 316 8.908903 TCTCTGAGGATTACTTCATTTCTAGTC 58.091 37.037 4.59 0.00 31.98 2.59
316 317 8.691797 GTCTCTGAGGATTACTTCATTTCTAGT 58.308 37.037 4.59 0.00 31.98 2.57
317 318 8.141268 GGTCTCTGAGGATTACTTCATTTCTAG 58.859 40.741 4.59 0.00 31.98 2.43
318 319 7.619698 TGGTCTCTGAGGATTACTTCATTTCTA 59.380 37.037 4.59 0.00 31.98 2.10
319 320 6.441924 TGGTCTCTGAGGATTACTTCATTTCT 59.558 38.462 4.59 0.00 31.98 2.52
320 321 6.644347 TGGTCTCTGAGGATTACTTCATTTC 58.356 40.000 4.59 0.00 31.98 2.17
321 322 6.627087 TGGTCTCTGAGGATTACTTCATTT 57.373 37.500 4.59 0.00 31.98 2.32
322 323 6.627087 TTGGTCTCTGAGGATTACTTCATT 57.373 37.500 4.59 0.00 31.98 2.57
323 324 6.614906 AGATTGGTCTCTGAGGATTACTTCAT 59.385 38.462 4.59 0.00 31.98 2.57
324 325 5.960811 AGATTGGTCTCTGAGGATTACTTCA 59.039 40.000 4.59 0.00 0.00 3.02
325 326 6.478512 AGATTGGTCTCTGAGGATTACTTC 57.521 41.667 4.59 0.00 0.00 3.01
326 327 7.416890 CGTTAGATTGGTCTCTGAGGATTACTT 60.417 40.741 4.59 0.00 35.87 2.24
327 328 6.039941 CGTTAGATTGGTCTCTGAGGATTACT 59.960 42.308 4.59 1.50 35.87 2.24
328 329 6.210078 CGTTAGATTGGTCTCTGAGGATTAC 58.790 44.000 4.59 0.00 35.87 1.89
329 330 5.221263 GCGTTAGATTGGTCTCTGAGGATTA 60.221 44.000 4.59 0.00 35.87 1.75
330 331 4.442192 GCGTTAGATTGGTCTCTGAGGATT 60.442 45.833 4.59 0.00 35.87 3.01
331 332 3.068873 GCGTTAGATTGGTCTCTGAGGAT 59.931 47.826 4.59 0.00 35.87 3.24
332 333 2.427453 GCGTTAGATTGGTCTCTGAGGA 59.573 50.000 4.59 0.00 35.87 3.71
333 334 2.482142 GGCGTTAGATTGGTCTCTGAGG 60.482 54.545 4.59 0.00 35.87 3.86
334 335 2.796383 CGGCGTTAGATTGGTCTCTGAG 60.796 54.545 0.00 0.00 35.87 3.35
335 336 1.134367 CGGCGTTAGATTGGTCTCTGA 59.866 52.381 0.00 0.00 35.87 3.27
336 337 1.134367 TCGGCGTTAGATTGGTCTCTG 59.866 52.381 6.85 0.00 35.87 3.35
337 338 1.471119 TCGGCGTTAGATTGGTCTCT 58.529 50.000 6.85 0.00 35.87 3.10
338 339 2.510768 ATCGGCGTTAGATTGGTCTC 57.489 50.000 6.85 0.00 35.87 3.36
339 340 2.167693 TGAATCGGCGTTAGATTGGTCT 59.832 45.455 6.85 0.00 38.32 3.85
340 341 2.284417 GTGAATCGGCGTTAGATTGGTC 59.716 50.000 6.85 0.00 38.32 4.02
341 342 2.277084 GTGAATCGGCGTTAGATTGGT 58.723 47.619 6.85 0.00 38.32 3.67
342 343 1.597663 GGTGAATCGGCGTTAGATTGG 59.402 52.381 6.85 0.00 38.32 3.16
343 344 1.597663 GGGTGAATCGGCGTTAGATTG 59.402 52.381 6.85 0.00 38.32 2.67
344 345 1.485066 AGGGTGAATCGGCGTTAGATT 59.515 47.619 6.85 0.00 40.63 2.40
345 346 1.068741 GAGGGTGAATCGGCGTTAGAT 59.931 52.381 6.85 0.00 0.00 1.98
346 347 0.458669 GAGGGTGAATCGGCGTTAGA 59.541 55.000 6.85 0.00 0.00 2.10
347 348 0.174845 TGAGGGTGAATCGGCGTTAG 59.825 55.000 6.85 0.00 0.00 2.34
348 349 0.174845 CTGAGGGTGAATCGGCGTTA 59.825 55.000 6.85 0.00 0.00 3.18
349 350 1.079127 CTGAGGGTGAATCGGCGTT 60.079 57.895 6.85 0.00 0.00 4.84
350 351 1.982395 TCTGAGGGTGAATCGGCGT 60.982 57.895 6.85 0.00 0.00 5.68
351 352 1.519455 GTCTGAGGGTGAATCGGCG 60.519 63.158 0.00 0.00 0.00 6.46
352 353 1.153349 GGTCTGAGGGTGAATCGGC 60.153 63.158 0.00 0.00 0.00 5.54
353 354 1.141881 CGGTCTGAGGGTGAATCGG 59.858 63.158 0.00 0.00 0.00 4.18
354 355 1.519455 GCGGTCTGAGGGTGAATCG 60.519 63.158 0.00 0.00 0.00 3.34
355 356 0.250513 AAGCGGTCTGAGGGTGAATC 59.749 55.000 0.00 0.00 0.00 2.52
356 357 0.693049 AAAGCGGTCTGAGGGTGAAT 59.307 50.000 0.00 0.00 0.00 2.57
357 358 0.472471 AAAAGCGGTCTGAGGGTGAA 59.528 50.000 0.00 0.00 0.00 3.18
358 359 0.472471 AAAAAGCGGTCTGAGGGTGA 59.528 50.000 0.00 0.00 0.00 4.02
359 360 3.021451 AAAAAGCGGTCTGAGGGTG 57.979 52.632 0.00 0.00 0.00 4.61
375 376 1.679640 GGCCTCCCGGTTATCGAAAAA 60.680 52.381 0.00 0.00 42.43 1.94
376 377 0.107557 GGCCTCCCGGTTATCGAAAA 60.108 55.000 0.00 0.00 42.43 2.29
377 378 1.523524 GGCCTCCCGGTTATCGAAA 59.476 57.895 0.00 0.00 42.43 3.46
378 379 3.223226 GGCCTCCCGGTTATCGAA 58.777 61.111 0.00 0.00 42.43 3.71
401 402 2.864489 GCGAACTTAGGGCATCTCTAGC 60.864 54.545 0.00 0.00 0.00 3.42
402 403 2.362397 TGCGAACTTAGGGCATCTCTAG 59.638 50.000 0.00 0.00 0.00 2.43
403 404 2.362397 CTGCGAACTTAGGGCATCTCTA 59.638 50.000 0.00 0.00 35.91 2.43
404 405 1.137872 CTGCGAACTTAGGGCATCTCT 59.862 52.381 0.00 0.00 35.91 3.10
405 406 1.576356 CTGCGAACTTAGGGCATCTC 58.424 55.000 0.00 0.00 35.91 2.75
406 407 0.179000 CCTGCGAACTTAGGGCATCT 59.821 55.000 0.00 0.00 35.91 2.90
407 408 1.440145 GCCTGCGAACTTAGGGCATC 61.440 60.000 0.00 0.00 42.08 3.91
408 409 1.452108 GCCTGCGAACTTAGGGCAT 60.452 57.895 0.00 0.00 42.08 4.40
409 410 2.046314 GCCTGCGAACTTAGGGCA 60.046 61.111 0.00 0.00 42.08 5.36
410 411 1.377333 AAGCCTGCGAACTTAGGGC 60.377 57.895 0.00 0.00 42.74 5.19
411 412 1.026718 CCAAGCCTGCGAACTTAGGG 61.027 60.000 0.00 0.00 34.58 3.53
412 413 0.321653 ACCAAGCCTGCGAACTTAGG 60.322 55.000 0.00 0.00 37.14 2.69
413 414 0.798776 CACCAAGCCTGCGAACTTAG 59.201 55.000 0.00 0.00 0.00 2.18
461 462 5.726397 TGCTTTTTGCTACGAGGAGTAATA 58.274 37.500 0.00 0.00 43.37 0.98
466 467 3.188895 GTTGCTTTTTGCTACGAGGAG 57.811 47.619 0.00 0.00 43.37 3.69
534 537 1.627864 AAGGGCTGGCGTAAATGTTT 58.372 45.000 0.00 0.00 0.00 2.83
535 538 1.272212 CAAAGGGCTGGCGTAAATGTT 59.728 47.619 0.00 0.00 0.00 2.71
539 542 1.231958 CGACAAAGGGCTGGCGTAAA 61.232 55.000 0.00 0.00 43.09 2.01
540 543 1.669760 CGACAAAGGGCTGGCGTAA 60.670 57.895 0.00 0.00 43.09 3.18
541 544 2.047655 CGACAAAGGGCTGGCGTA 60.048 61.111 0.00 0.00 43.09 4.42
544 547 0.387565 TTTTTCGACAAAGGGCTGGC 59.612 50.000 0.00 0.00 0.00 4.85
564 567 1.272212 CGTTGGGCTGGCATAGTTTTT 59.728 47.619 2.88 0.00 0.00 1.94
565 568 0.887933 CGTTGGGCTGGCATAGTTTT 59.112 50.000 2.88 0.00 0.00 2.43
566 569 1.595093 GCGTTGGGCTGGCATAGTTT 61.595 55.000 2.88 0.00 39.11 2.66
567 570 2.046285 GCGTTGGGCTGGCATAGTT 61.046 57.895 2.88 0.00 39.11 2.24
568 571 2.438434 GCGTTGGGCTGGCATAGT 60.438 61.111 2.88 0.00 39.11 2.12
623 626 2.333926 GAATTTTGGGTTTAGGCGTGC 58.666 47.619 0.00 0.00 0.00 5.34
627 630 4.868171 GGATTTCGAATTTTGGGTTTAGGC 59.132 41.667 0.00 0.00 0.00 3.93
628 631 5.416083 GGGATTTCGAATTTTGGGTTTAGG 58.584 41.667 0.00 0.00 0.00 2.69
650 654 0.169451 GTAATTTCGCACGGTTGGGG 59.831 55.000 0.00 0.00 36.33 4.96
666 670 2.656069 GCCAGGGGCTGTCTCGTAA 61.656 63.158 0.00 0.00 46.69 3.18
746 750 1.068417 CAGGTTTCGACGGGTGTGA 59.932 57.895 0.00 0.00 0.00 3.58
749 753 1.076332 GATTCAGGTTTCGACGGGTG 58.924 55.000 0.00 0.00 0.00 4.61
761 765 2.761465 GGCTGGGAGGGGATTCAGG 61.761 68.421 0.00 0.00 0.00 3.86
806 811 0.031857 TTTTGCGTCGGACGGTTCTA 59.968 50.000 29.30 9.32 42.82 2.10
863 868 4.109693 TTTTCGAATGCGGGCGGC 62.110 61.111 10.44 10.44 43.96 6.53
864 869 2.202427 GTTTTCGAATGCGGGCGG 60.202 61.111 0.00 0.00 38.28 6.13
865 870 2.195123 AAGGTTTTCGAATGCGGGCG 62.195 55.000 0.00 0.00 38.28 6.13
866 871 0.456142 GAAGGTTTTCGAATGCGGGC 60.456 55.000 0.00 0.00 38.28 6.13
867 872 0.170339 GGAAGGTTTTCGAATGCGGG 59.830 55.000 0.00 0.00 38.28 6.13
985 990 4.473520 CATCTCCGCCGCCCTTGT 62.474 66.667 0.00 0.00 0.00 3.16
986 991 4.473520 ACATCTCCGCCGCCCTTG 62.474 66.667 0.00 0.00 0.00 3.61
987 992 4.162690 GACATCTCCGCCGCCCTT 62.163 66.667 0.00 0.00 0.00 3.95
1201 1226 1.058284 GAACCGAACCGAAATCGCG 59.942 57.895 0.00 0.00 38.93 5.87
1209 1234 2.364103 AAACGCAACGAACCGAACCG 62.364 55.000 0.00 0.00 0.00 4.44
1210 1235 0.655337 GAAACGCAACGAACCGAACC 60.655 55.000 0.00 0.00 0.00 3.62
1216 1241 0.452122 CATCCCGAAACGCAACGAAC 60.452 55.000 0.00 0.00 0.00 3.95
1418 1443 0.674895 AGCGCACCTTGGTGATCTTC 60.675 55.000 22.52 4.39 0.00 2.87
1460 1485 0.650512 ACGCCACATAAATTCGCTCG 59.349 50.000 0.00 0.00 0.00 5.03
1551 2101 2.306847 GGTGACCACAACTCCACAATT 58.693 47.619 0.00 0.00 0.00 2.32
1605 2155 4.630894 TCAAATTACTAGCCAATTGCCG 57.369 40.909 0.00 0.00 42.71 5.69
1646 2196 2.542178 CGACCGTTCACTTTCACAATCA 59.458 45.455 0.00 0.00 0.00 2.57
1758 2372 1.149361 TCACGCGGTTCTGACAACAC 61.149 55.000 12.47 0.00 0.00 3.32
1805 2419 1.609841 CCAGACTGCTCATGTGCTTCA 60.610 52.381 19.60 0.04 0.00 3.02
1809 2423 1.669779 GAATCCAGACTGCTCATGTGC 59.330 52.381 12.78 12.78 0.00 4.57
1834 2448 9.710818 AGTACTTAACAAGTAAGGATATCCTCA 57.289 33.333 24.71 7.80 44.95 3.86
1837 2451 9.761504 GGAAGTACTTAACAAGTAAGGATATCC 57.238 37.037 14.41 14.41 44.95 2.59
1842 2456 8.755977 CCTATGGAAGTACTTAACAAGTAAGGA 58.244 37.037 8.42 0.00 44.95 3.36
1843 2457 7.985752 CCCTATGGAAGTACTTAACAAGTAAGG 59.014 40.741 8.42 14.30 44.95 2.69
1844 2458 8.755977 TCCCTATGGAAGTACTTAACAAGTAAG 58.244 37.037 8.42 7.63 40.73 2.34
1845 2459 8.534496 GTCCCTATGGAAGTACTTAACAAGTAA 58.466 37.037 8.42 0.00 43.17 2.24
1846 2460 7.897565 AGTCCCTATGGAAGTACTTAACAAGTA 59.102 37.037 8.42 1.33 44.07 2.24
1847 2461 6.729569 AGTCCCTATGGAAGTACTTAACAAGT 59.270 38.462 8.42 0.20 44.07 3.16
1848 2462 7.184067 AGTCCCTATGGAAGTACTTAACAAG 57.816 40.000 8.42 10.27 44.07 3.16
1849 2463 8.849543 ATAGTCCCTATGGAAGTACTTAACAA 57.150 34.615 8.42 0.00 44.07 2.83
1850 2464 8.849543 AATAGTCCCTATGGAAGTACTTAACA 57.150 34.615 8.42 11.27 44.07 2.41
1853 2467 9.584008 CACTAATAGTCCCTATGGAAGTACTTA 57.416 37.037 8.42 0.00 44.07 2.24
1854 2468 8.066247 ACACTAATAGTCCCTATGGAAGTACTT 58.934 37.037 8.13 8.13 44.07 2.24
1855 2469 7.593653 ACACTAATAGTCCCTATGGAAGTACT 58.406 38.462 0.00 0.00 44.07 2.73
1856 2470 7.836479 ACACTAATAGTCCCTATGGAAGTAC 57.164 40.000 0.00 0.00 44.07 2.73
1857 2471 9.359653 GTTACACTAATAGTCCCTATGGAAGTA 57.640 37.037 0.00 0.00 44.07 2.24
1858 2472 8.066247 AGTTACACTAATAGTCCCTATGGAAGT 58.934 37.037 0.00 0.00 44.07 3.01
1859 2473 8.361139 CAGTTACACTAATAGTCCCTATGGAAG 58.639 40.741 0.00 0.00 44.07 3.46
1860 2474 8.063153 TCAGTTACACTAATAGTCCCTATGGAA 58.937 37.037 0.00 0.00 44.07 3.53
1861 2475 7.589081 TCAGTTACACTAATAGTCCCTATGGA 58.411 38.462 0.00 0.00 38.75 3.41
1862 2476 7.834881 TCAGTTACACTAATAGTCCCTATGG 57.165 40.000 0.00 0.00 0.00 2.74
1919 2533 9.221933 CCATTTATGTAGGTTGTACACAGTTTA 57.778 33.333 0.00 0.00 0.00 2.01
2037 2651 7.737869 TGTTCAGTTACATTAACAGTCCCTAA 58.262 34.615 0.00 0.00 41.07 2.69
2065 2679 4.641954 CTGCGACAGTGACAAAATATCAC 58.358 43.478 0.00 0.00 45.70 3.06
2090 2704 8.133627 CCTTTGATGAGCTTATTAACCTCAATG 58.866 37.037 5.71 0.00 38.89 2.82
2096 2710 6.460261 GCCTTCCTTTGATGAGCTTATTAACC 60.460 42.308 0.00 0.00 0.00 2.85
2099 2713 5.133221 GGCCTTCCTTTGATGAGCTTATTA 58.867 41.667 0.00 0.00 0.00 0.98
2416 3092 4.778143 CCGTTGGCCCGCTTAGCT 62.778 66.667 0.00 0.00 0.00 3.32
2717 3417 2.158943 GGCGCCTAGTAAGAGAATGGTT 60.159 50.000 22.15 0.00 0.00 3.67
2741 3441 1.909700 ACACACTGGTAGCCAATTGG 58.090 50.000 20.81 20.81 30.80 3.16
2742 3442 5.446143 TTTAACACACTGGTAGCCAATTG 57.554 39.130 0.00 0.00 30.80 2.32
2743 3443 6.472686 TTTTTAACACACTGGTAGCCAATT 57.527 33.333 0.00 0.00 30.80 2.32
2769 3533 4.893424 TGTTTACACTTGTTCAGAAGGC 57.107 40.909 0.00 0.00 0.00 4.35
2782 3546 6.727824 ACTCTACAAGCATGATGTTTACAC 57.272 37.500 9.48 0.00 32.27 2.90
2783 3547 7.382898 TGTACTCTACAAGCATGATGTTTACA 58.617 34.615 9.48 9.30 35.38 2.41
2784 3548 7.827819 TGTACTCTACAAGCATGATGTTTAC 57.172 36.000 9.48 7.47 35.38 2.01
2919 3683 0.110056 GCCTTCACAATCTGCACACG 60.110 55.000 0.00 0.00 0.00 4.49
3050 3814 3.144120 CTCGGACGCCTCCAGGATG 62.144 68.421 2.54 0.00 36.12 3.51
3065 3829 2.825836 GTGATGCTTGGGGCCTCG 60.826 66.667 0.84 0.00 38.21 4.63
3348 4112 3.752747 TCCACAAGAGCACACACATTATG 59.247 43.478 0.00 0.00 0.00 1.90
3491 4255 4.749245 AAACAGACCGTCTTGCAATAAG 57.251 40.909 0.00 0.00 0.00 1.73
3586 4350 4.521146 GAAAGATGAAGAGGATTCAGGCA 58.479 43.478 0.00 0.00 0.00 4.75
3667 4432 2.105006 CTGTCTTGCCAGCACACTAT 57.895 50.000 0.00 0.00 0.00 2.12
3682 4495 2.686915 CCTTGATGATGGGAAAGCTGTC 59.313 50.000 0.00 0.00 0.00 3.51
3683 4496 2.622452 CCCTTGATGATGGGAAAGCTGT 60.622 50.000 0.00 0.00 46.15 4.40
3684 4497 2.029623 CCCTTGATGATGGGAAAGCTG 58.970 52.381 0.00 0.00 46.15 4.24
3685 4498 1.687368 GCCCTTGATGATGGGAAAGCT 60.687 52.381 7.36 0.00 46.15 3.74
3686 4499 0.749049 GCCCTTGATGATGGGAAAGC 59.251 55.000 7.36 0.00 46.15 3.51
3687 4500 1.063417 AGGCCCTTGATGATGGGAAAG 60.063 52.381 7.36 0.00 46.15 2.62
3688 4501 1.009997 AGGCCCTTGATGATGGGAAA 58.990 50.000 7.36 0.00 46.15 3.13
3689 4502 1.009997 AAGGCCCTTGATGATGGGAA 58.990 50.000 7.36 0.00 46.15 3.97
3690 4503 0.259647 CAAGGCCCTTGATGATGGGA 59.740 55.000 19.04 0.00 46.15 4.37
3691 4504 0.032813 ACAAGGCCCTTGATGATGGG 60.033 55.000 29.74 0.73 43.42 4.00
3692 4505 1.108776 CACAAGGCCCTTGATGATGG 58.891 55.000 29.74 7.85 43.42 3.51
3693 4506 0.458669 GCACAAGGCCCTTGATGATG 59.541 55.000 29.74 17.66 43.42 3.07
3694 4507 0.333993 AGCACAAGGCCCTTGATGAT 59.666 50.000 29.74 18.56 43.42 2.45
3695 4508 0.609957 CAGCACAAGGCCCTTGATGA 60.610 55.000 29.74 0.00 43.42 2.92
3696 4509 1.601419 CCAGCACAAGGCCCTTGATG 61.601 60.000 29.74 22.15 43.42 3.07
3697 4510 1.304713 CCAGCACAAGGCCCTTGAT 60.305 57.895 29.74 12.12 43.42 2.57
3698 4511 2.115910 CCAGCACAAGGCCCTTGA 59.884 61.111 29.74 0.00 43.42 3.02
3699 4512 2.203538 ACCAGCACAAGGCCCTTG 60.204 61.111 21.95 21.95 46.50 3.61
3700 4513 2.203538 CACCAGCACAAGGCCCTT 60.204 61.111 0.00 0.00 46.50 3.95
3701 4514 4.290622 CCACCAGCACAAGGCCCT 62.291 66.667 0.00 0.00 46.50 5.19
3702 4515 4.284550 TCCACCAGCACAAGGCCC 62.285 66.667 0.00 0.00 46.50 5.80
3703 4516 2.674380 CTCCACCAGCACAAGGCC 60.674 66.667 0.00 0.00 46.50 5.19
3704 4517 2.674380 CCTCCACCAGCACAAGGC 60.674 66.667 0.00 0.00 45.30 4.35
3705 4518 2.034687 CCCTCCACCAGCACAAGG 59.965 66.667 0.00 0.00 0.00 3.61
3706 4519 1.302832 GTCCCTCCACCAGCACAAG 60.303 63.158 0.00 0.00 0.00 3.16
3707 4520 2.075566 TGTCCCTCCACCAGCACAA 61.076 57.895 0.00 0.00 0.00 3.33
3708 4521 2.447572 TGTCCCTCCACCAGCACA 60.448 61.111 0.00 0.00 0.00 4.57
3709 4522 2.032681 GTGTCCCTCCACCAGCAC 59.967 66.667 0.00 0.00 0.00 4.40
3710 4523 3.625897 CGTGTCCCTCCACCAGCA 61.626 66.667 0.00 0.00 31.47 4.41
3711 4524 3.626924 ACGTGTCCCTCCACCAGC 61.627 66.667 0.00 0.00 31.47 4.85
3712 4525 1.754380 TTCACGTGTCCCTCCACCAG 61.754 60.000 16.51 0.00 31.47 4.00
3713 4526 1.754380 CTTCACGTGTCCCTCCACCA 61.754 60.000 16.51 0.00 31.47 4.17
3714 4527 1.004918 CTTCACGTGTCCCTCCACC 60.005 63.158 16.51 0.00 31.47 4.61
3715 4528 1.668151 GCTTCACGTGTCCCTCCAC 60.668 63.158 16.51 0.00 0.00 4.02
3716 4529 2.099652 CTGCTTCACGTGTCCCTCCA 62.100 60.000 16.51 4.90 0.00 3.86
3717 4530 1.374758 CTGCTTCACGTGTCCCTCC 60.375 63.158 16.51 0.36 0.00 4.30
3718 4531 0.249911 AACTGCTTCACGTGTCCCTC 60.250 55.000 16.51 2.56 0.00 4.30
3719 4532 0.249911 GAACTGCTTCACGTGTCCCT 60.250 55.000 16.51 0.00 0.00 4.20
3720 4533 0.531974 TGAACTGCTTCACGTGTCCC 60.532 55.000 16.51 5.35 31.00 4.46
3721 4534 0.582005 GTGAACTGCTTCACGTGTCC 59.418 55.000 16.51 5.72 45.29 4.02
3740 4553 6.698008 TGGTTCAGGCATTTGTATCTATTG 57.302 37.500 0.00 0.00 0.00 1.90
3744 4557 5.829924 CCTTATGGTTCAGGCATTTGTATCT 59.170 40.000 0.00 0.00 0.00 1.98
3746 4559 5.518865 ACCTTATGGTTCAGGCATTTGTAT 58.481 37.500 0.00 0.00 46.05 2.29
3747 4560 4.929479 ACCTTATGGTTCAGGCATTTGTA 58.071 39.130 0.00 0.00 46.05 2.41
3752 4565 4.796110 ACATACCTTATGGTTCAGGCAT 57.204 40.909 5.49 0.00 46.05 4.40
3753 4566 4.584638 AACATACCTTATGGTTCAGGCA 57.415 40.909 5.49 0.00 46.05 4.75
3754 4567 5.652452 AGAAAACATACCTTATGGTTCAGGC 59.348 40.000 5.49 0.00 44.86 4.85
3755 4568 7.703058 AAGAAAACATACCTTATGGTTCAGG 57.297 36.000 5.49 0.00 44.86 3.86
3756 4569 8.792633 TCAAAGAAAACATACCTTATGGTTCAG 58.207 33.333 5.49 0.00 44.86 3.02
3757 4570 8.698973 TCAAAGAAAACATACCTTATGGTTCA 57.301 30.769 5.49 0.00 44.86 3.18
3771 4612 8.930760 CACCAAACACTAAATTCAAAGAAAACA 58.069 29.630 0.00 0.00 0.00 2.83
3891 4733 1.825090 TTGCATCCGACATTGAGCTT 58.175 45.000 0.00 0.00 0.00 3.74
3892 4734 1.741706 CTTTGCATCCGACATTGAGCT 59.258 47.619 0.00 0.00 0.00 4.09
3893 4735 1.202222 CCTTTGCATCCGACATTGAGC 60.202 52.381 0.00 0.00 0.00 4.26
3894 4736 1.202222 GCCTTTGCATCCGACATTGAG 60.202 52.381 0.00 0.00 37.47 3.02
3895 4737 0.810648 GCCTTTGCATCCGACATTGA 59.189 50.000 0.00 0.00 37.47 2.57
3896 4738 0.527113 TGCCTTTGCATCCGACATTG 59.473 50.000 0.00 0.00 44.23 2.82
3897 4739 2.959967 TGCCTTTGCATCCGACATT 58.040 47.368 0.00 0.00 44.23 2.71
3898 4740 4.740922 TGCCTTTGCATCCGACAT 57.259 50.000 0.00 0.00 44.23 3.06
3921 4763 1.134907 TCTTCCCGGATACTTCAACGC 60.135 52.381 0.73 0.00 0.00 4.84
3934 4776 3.906720 TCCTCAGGTTAAATCTTCCCG 57.093 47.619 0.00 0.00 0.00 5.14
3964 4806 5.277974 GCCAGCGCAGAAGATAATCAAAATA 60.278 40.000 11.47 0.00 34.03 1.40
3974 4816 2.510238 GACGCCAGCGCAGAAGAT 60.510 61.111 11.47 0.00 44.19 2.40
3983 4825 1.407258 AGATAACTGAGAGACGCCAGC 59.593 52.381 0.00 0.00 33.90 4.85
4021 4863 9.438228 TCAATGGTGAAAACGACAGTAAATATA 57.562 29.630 0.00 0.00 0.00 0.86
4022 4864 8.330466 TCAATGGTGAAAACGACAGTAAATAT 57.670 30.769 0.00 0.00 0.00 1.28
4023 4865 7.094975 CCTCAATGGTGAAAACGACAGTAAATA 60.095 37.037 0.00 0.00 31.88 1.40
4024 4866 6.293955 CCTCAATGGTGAAAACGACAGTAAAT 60.294 38.462 0.00 0.00 31.88 1.40
4025 4867 5.008217 CCTCAATGGTGAAAACGACAGTAAA 59.992 40.000 0.00 0.00 31.88 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.