>input_sequence_35532
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--------------------------------------------ATGTCGGTCAGCAACATAGGGATGATGGACGGCGCC
TACTTCGTGGGGCGGAACGAGATCCTCGCCTGGATCAACACTACCCTGCAGCTCGGCCTCGCCAAGGTCGAGGAGGTACG
TTCGGATCTCCCCCCTCCCCTCTCCACCTCGTCTTCCAATGGCCTGTTCGTCCCCCGATCCG------------------
--TGCGGTTTTGCTGGATCTGCGGGCGCGATTTCGGTTCGGTTCGTTGCGTTTCGGGATGCTCACACGGCGCGCGGCCGG
AATTCTCGTGTGTGTGCAGGCGGCGTCGGGCGCGGTGGCGTGCCAGCTCATGGACGCGGCGCACCCCGGGGCGGTGCCCA
TGCACAAGGTCAACTTCGACGCCAAGAACGAGTACGACATGATCCAGAACTACAAGGTCCTGCAGGATGTGTTCAACAAG
CTGAAGATCACCAAGGTGCGCTCCCATTTCTTCTTCCCCTCTCGCGAGCGAA----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------TTTATGTGGCGTTAGTT
GTATTGCTCATGCCGCCAGATTACTCCGCACACGAGG-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------ATGCACTAAC
AATTTGTAGGTT-ATCAGTTAATTGTGGAGTTGTGGTCACCAGAATTCTATATACAGACACTGAGCCATGAGTTCGGCAA
TTGGCTAGTAATTTGATGGGTATATGTAGTTTTGTTGATTGTGAAAGTGAACGGTCGAGACATCACATTTTTAGGCTGTT
CAAAATACGGATCTGAATAGAAGGTTCCCTAAATA---------------------------------------------
------------------AATAGTG-TTTTTGCTGTGTGGAGAATTGCCATGTGTTGTCAGAACCGCGTGAAAACTGAAA
TTCAGTCCTTTTTAACTTTGAAGCACATGAGCAGTCTGGATTCTTATTGAGGATATCCTTACTTGTTAAGTACTTCCATA
GGGACTATTAGTGTAACTGAATTTTATATAAAAATATATATATCTGAATATGTAAACTGTGTACAACCTACATAAATGGT
GTTTGTCATCAGAACTGTGTGAAAACTGAAATTCAACCCTTTTGAGCAATCTGGATTACCATTGAGCATATCCTTACTTC
TTGTTATTCCTTAGGGACTGTTAATGTAACTGAACATTGTGATATTTTGTCACTGTCGCAGCACATTGAGGTTAATAAGC
TCATCAAAGGAAGGCCCCTAGACAACCTGGAGTTCATGCAGTGGATGAAAAGATACTGTGATTCTGTTAATGGTGGATTC
ATGACCAGGTAGCCAACCCCATTCTTTCTGTAGCATATATGACCAGG---------------------------------
----TAGTGTTACCAATTGTGCTTATCATATCTCATGAAAATCCTC-------------------------TGAACACGC
AGCTACAATGCTTCCGAGAGAAGAGAAAGCAGCAAGGGTGGGAAAGACACCAACAGAAGGACATCAGGGACTTCCCAGGC
GCCTGCCAAGTCTGCATCCGCCACCCACAAAGCTCAGCCTCCGTCGCACGCAGCTAAGCGGGCCAACGGGCATGCTTCAA
ATGCTCCACAGCGGTGCGCAAAGCCGCCT------------CCAGCTTAT------------GATGCACAGGTGAGAGTG
ACTTGGCATGAACGCTGAGCATAACTTTCTTGCTGTCTCTCGGCATTGCACAAGTCCTGTATTCTGACAATGATGCTTTG
CAGATGACCGAGCTGAAACTCCTTGTTGATAGCGCCGAGAAAGAGAGAGATTTCTATTTCTCTAAGCTGCGGGACGTTGA
GATCTTGTGCCAGAGCCCCGAGGTTGAGCATTTACCGGTAAGTAGCAGAAATGCTTAACCATTCTCTTACTAGGCGCCTG
CCAATTGGCTACCAGT----------------------------------------------------------------
GTGTTAAAAAAAGCCTTCTGAACAAGTGTAAACATCATGCTTGTAGAGTACAACAGCAGGTGTCTGAACGTGTAAACATC
ATGCTTGTAGAGTACAACAGCAGGTGTCTGAACCTTGATCTATGTATTTGAAAGGGCAATGTTGACGATGAAATCTTTAT
CTCGTGTGCAGATTGTGAAGGCTATCCAGAAGATACTCTATGCTTCGGAGGACGACCCCTCGACGGTGGCGGAAGCCCAG
GCAGAGATGGTGGCGCAGCAGAACCAGATGCAGCAGCAGCCAATGCTGAGCCCCATCCTGGAGGCGTCCGAGGCCCCAAG
CATCACCCCCAAGGATTCTTCCGAGGAGAGCTTGAGGCAGGAAGCAGCGGCAGCACACAAGAGGAAGAGCATCTCGGACC
TGGAGGAGTTCGAGATGGGGTCGAGCTCCAGGATGAGGCTCTCAGACGTCTCGGACGTGCAGCTGTGCGGCTCACCGTTG
ATGAGCTTCACCTGA-----------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------
>chr1A_1_TraesCS1A01G170100
CCAAGCCGTCCAGCGCCCCACCGCGTGTCGGCGACCCCGACCAGGGCTGCAGCAGGGACGACGACGGCGTAAGCGAGGCG
CGCGACGACGACGACGATGATGGCGACGGCGACTGCACCCGCTTCTACAGACTTTTCGACATGTAGACGACGACGCTGGC
TAGGCTTTTAGTTTGGCGTAATTAGGCGTGGTTTGCATGTGTTTTATGTTTTTATACAAATTTCAATGAAGTATCACCGA
GTTTGTGTAAAAATCGCCGAGTTTGCAAAAATTTGAATGAAATATCGCCGAACCCGCAACGACTTGTGGGCCAACGACTA
GAAATGAAGTAATCCTCAGAGACCAATCTAACGCCGATTCACCCTCAGACCGCTTTTTTTCGATAACCGGGAGGCCGAAT
GGCTAGAGATGCCCTAAGTTCGCAGGCTTGGTGGAGCAGGACCACCCGTTCGATCACACGCTATTACTCCTCG--TAGCA
AAAAGCAACGGGCAGAATTCGCTGAAACCGAAAACGCTCCACCGTTGCCCATAGGGAAACATTTACGCCAGCCCTTTGTC
GAAAAAAAAAACTATGCCAGCCCAACGCGAGTCGCCTTCACACCGCGAGAGACGTGATGGTTGCAGCACGCCTAAA-CCC
AAAATTCGAAATCCCCCAACCGTGCGAAATTACGAGACAGCCCCTGGCCACCCGCAGCGCTCCCAACGGTCGGACGAATC
CGGCCGTCCACGCGCACCCCGGCGCTCGGTCACACCCGTCGAAACCTGAATCCCC-TCCCAGCCCTGGCCGCACCGCAGA
CCTAGGAGGGTAGAACCGTCCGACGCAAAAGTCTCTCTCACCTTATATCTCGGCCGAATCCCCCAACGCCGCCCGCATTC
GAAAACCTTCCTCGCGAAACCCCAGCCCCGCTCCTCCGCTCCACCCCCACCTCCCCTGGTCCCTCGCGAGAGCAGGTCCG
GGTCGCGTCTCCGGCGGCGGAGAAGCAAGACAAGGGCGGCGGAGATGTCGGTCAGCAACATAGGGATGATGGACGGCGCC
TACTTCGTGGGGCGGAACGAGATCCTCGCCTGGATCAACACTACCCTGCAGCTCGGCCTCGCCAAGGTCGAGGAGGTACG
TTCGGATCTCCCCCCTCCCCTCTCCACCTCGTCTTCCAATGGCCTGTTCGTCCCCCGATCCG------------------
--TGCGGTTTTGCTGGATCTGCGGGCGCGATTTCGGTTCGGTTCGTTGCGTTTCGGGATGCTCACACGGCGCGCGGCCGG
AATTCTCGTGTGTGTGCAGGCGGCGTCGGGCGCGGTGGCGTGCCAGCTCATGGACGCGGCGCACCCCGGGGCGGTGCCCA
TGCACAAGGTCAACTTCGACGCCAAGAACGAGTACGACATGATCCAGAACTACAAGGTCCTGCAGGATGTGTTCAACAAG
CTGAAGATCACCAAGGTGCGCTCCCATTTCTTCTTCCCCTCTCGCGAGCGAA----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------TTTATGTGGCGTTAGTT
GTATTGCTCATGCCGCCAGATTACTCCGCACACGAGG-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------ATGCACTAAC
AATTTGTAGGTT-ATCAGTTAATTGTGGAGTTGTGGTCACCAGAATTCTATATACAGACACTGAGCCATGAGTTCGGCAA
TTGGCTAGTAATTTGATGGGTATATGTAGTTTTGTTGATTGTGAAAGTGAACGGTCGAGACATCACATTTTTAGGCTGTT
CAAAATACGGATCTGAATAGAAGGTTCCCTAAATA---------------------------------------------
------------------AATAGTG-TTTTTGCTGTGTGGAGAATTGCCATGTGTTGTCAGAACCGCGTGAAAACTGAAA
TTCAGTCCTTTTTAACTTTGAAGCACATGAGCAGTCTGGATTCTTATTGAGGATATCCTTACTTGTTAAGTACTTCCATA
GGGACTATTAGTGTAACTGAATTTTATATAAAAATATATATATCTGAATATGTAAACTGTGTACAACCTACATAAATGGT
GTTTGTCATCAGAACTGTGTGAAAACTGAAATTCAACCCTTTTGAGCAATCTGGATTACCATTGAGCATATCCTTACTTC
TTGTTATTCCTTAGGGACTGTTAATGTAACTGAACATTGTGATATTTTGTCACTGTCGCAGCACATTGAGGTTAATAAGC
TCATCAAAGGAAGGCCCCTAGACAACCTGGAGTTCATGCAGTGGATGAAAAGATACTGTGATTCTGTTAATGGTGGATTC
ATGACCAGGTAGCCAACCCCATTCTTTCTGTAGCATATATGACCAGG---------------------------------
----TAGTGTTACCAATTGTGCTTATCATATCTCATGAAAATCCTC-------------------------TGAACACGC
AGCTACAATGCTTCCGAGAGAAGAGAAAGCAGCAAGGGTGGGAAAGACACCAACAGAAGGACATCAGGGACTTCCCAGGC
GCCTGCCAAGTCTGCATCCGCCACCCACAAAGCTCAGCCTCCGTCGCACGCAGCTAAGCGGGCCAACGGGCATGCTTCAA
ATGCTCCACAGCGGTGCGCAAAGCCGCCT------------CCAGCTTAT------------GATGCACAGGTGAGAGTG
ACTTGGCATGAACGCTGAGCATAACTTTCTTGCTGTCTCTCGGCATTGCACAAGTCCTGTATTCTGACAATGATGCTTTG
CAGATGACCGAGCTGAAACTCCTTGTTGATAGCGCCGAGAAAGAGAGAGATTTCTATTTCTCTAAGCTGCGGGACGTTGA
GATCTTGTGCCAGAGCCCCGAGGTTGAGCATTTACCGGTAAGTAGCAGAAATGCTTAACCATTCTCTTACTAGGCGCCTG
CCAATTGGCTACCAGT----------------------------------------------------------------
GTGTTAAAAAAAGCCTTCTGAACAAGTGTAAACATCATGCTTGTAGAGTACAACAGCAGGTGTCTGAACGTGTAAACATC
ATGCTTGTAGAGTACAACAGCAGGTGTCTGAACCTTGATCTATGTATTTGAAAGGGCAATGTTGACGATGAAATCTTTAT
CTCGTGTGCAGATTGTGAAGGCTATCCAGAAGATACTCTATGCTTCGGAGGACGACCCCTCGACGGTGGCGGAAGCCCAG
GCAGAGATGGTGGCGCAGCAGAACCAGATGCAGCAGCAGCCAATGCTGAGCCCCATCCTGGAGGCGTCCGAGGCCCCAAG
CATCACCCCCAAGGATTCTTCCGAGGAGAGCTTGAGGCAGGAAGCAGCGGCAGCACACAAGAGGAAGAGCATCTCGGACC
TGGAGGAGTTCGAGATGGGGTCGAGCTCCAGGATGAGGCTCTCAGACGTCTCGGACGTGCAGCTGTGCGGCTCACCGTTG
ATGAGCTTCACCTGAAAGAAAGGAGGGACCGAATTGCAGGGGCTGAGTTGATGTCATTGCCGGTTATGACTTGTGGGTTT
ATCTTGTGTTGTTTCGTTTGTTGTTTGGTGTCATAATGTGTGTGCTCTTGTGGAGCTGGAGTTGAACCTGCCTTTGACTG
TGATCGATCTGCCACAGCATTTGTGGCCTTCTGCAACATGTTATTATTGAATAGCCTCTTTTATGTAGTCACTGGTGTTC
CTTGCTCTGCCTCTCTTATTGCAAGACGGTCTGTTTTCGATTACAAAAAGGTTGCTGCGCTCTGATTTTTTTGTTAGCGG
GTATCCCTGGAATACAAATTCTGTGCTGGTGCCTGAATCCTCTTCATCTTT-CCTGTCCGCCGTCGTTGCATTCTCTCCG
CTGGCATCATCGAGCTCGACCAACCTGCCATA------------------------------------------------
TAGTGTGCTGGCAAGACAGCTTTCCCATCATCAAGGGCCTTGTGCTGGTGGAGGGACACGTGAAGCAGTTCACAATAGAT
ACAAATGCCTG----------------------------AACCATAAGGTATGTTTTCTTTGAATTTAGTGTTT-GGTGG
CCCTGTGATTTTTTTGGAGGTGGGTCGATGCTAATGAAGATTATCTGGTGGCAAAAGGGATATTGCCAATGCACTCTAAT
TAATAAAAGAAGAAGCTCAATGTCGGATGCAAAGGCAAGAAGGCGTTGAAGTATCCGGGAAGATTTAACCTGAGGATTCA
GGTTGTATTTTGATTATCTTCTGCGCTGGCGTCTCTCAGTTATCTGTTTATGTTACTATCATTATATTTACTGTCGTTTT
CACCATTGAGGTTACATTATGATTCTCTTTTGTATTAACATTACTTACTGAATTATGTGTTCACAATACATTTCATATTA
TATAACCATCGAGACTATGTACAGGAGAAGACACTGAGCCTGCAAATACAGACATAGAATACTCCACATCTAGGGATTCA
GGTCACACTTTGATTCTCTTCTGCATTCACATTACTTCTGAATTATGTGTTCA
>chr1D_415
--------------------------------------------------------------------------------
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--------------TAAGTTGGCAGGCTTGG-GGAGCATGACCACCCGTTCGATCGAACGCGATTA---CTCG--TAGCA
AAAAGCAACGGGCAGAATTCGCTGAAACCGAAAACGCTCCACCGTTGCCCATAGGGCCACAG------------------
-----------CTATGCCAGCCCAACGCGAGTCGCCTTCACACCGCGAGAGACGCGACGGTTGCACCACTGCTAAACCCC
AAAATTCGAAATCTCCCAACCGTGCGAAAATACGAGACAGCCCCTGACCACCCGCACCGCTCCCAACGGTCGGACCAATC
CGGCCGTCCAGGCGCAC-CCGGCGCTCGGGCATACCCGTCGAGATTCGAATCCCC-TCCCTGCCCTGGCCGCACCGCAGA
CCTAGGAGGGCAGAACCGTCCGACGAAGAAGTCTCTCTCACCTTATATCTTGGCCGAATCCCCAACG-----CCGCATTC
GAAAACCTTCCTCGCGAAACACCAGCCCCGCTCCTCACCCT--CCCCCACCTCCCCTGGTCCCTCGCGAGAGCAGGTCCG
GGTCGCGTCTCCGGCGGCGGAGAAGCAAG-----GGCGGCGGAGATGTCGGTCAGCAACATAGGGATGATGGACGGCGCC
TACTTCGTCGGGCGGAACGAGATCCTCGCCTGGATCAACACCACGCTGCAGCTCGGCCTCGCCAAGGTCGAGGAGGTACG
CACGGATCTCCCCCCTCCCCTCTCCGCCTCGTCTTCCAATGGCCTGTTCTTCCCCCGATCCG------------------
--TGCGGTTTTGCTGGATCTGCGGGTGCGATTTGTGTTCGATTCGTTGCGTTTCGGGATGCTCACACGGCGCGCGGCCGG
AATTCTCGTGTGTGTGCAGGCGGCGTCGGGCGCGGTGGCGTGCCAGCTCATGGACGCGGCGCACCCCGGGGCGGTGCCCA
TGCACAAGGTCAACTTCGACGCCAAGAACGAGTACGACATGATCCAGAACTACAAGGTCCTGCAGGATGTGTTCAACAAG
CTAAAGATCACCAAGGTGCGCTCCCATTTCTTCT-CCCCCCTCGTGAGCGAA----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------TTTATGTGGCGTTAGTT
GTATTGCTCATGCCGCCAGATTACTCCGCACACGAGG-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------ATGCACTAAG
AATTTGTAGGTT-ATCAGTTCATTGTGGAGTTGTGGTCACCAGAATTCTATATACAGACACTGAGCCATGAGTTAGGCAA
TTGGCTAGTAATTTGATGGGTATATGTAGTTTTGTGGATTGTGAAAGTGAACGGTCGAGACATCACATTTTTAGGCTCTT
CAAAATACGGATCTGAATAGAAGGTTCCCTAAATA---------------------------------------------
------------------AATAGTGTTTTTTGTTGTGTGGAGAATTGCTATATGTTGTCAGAACCGCGTGAAAACTGAAA
TTCAGTCCTTTTTAACTTAGAAACACATGAGCAGTCTGGATT--------------------------------------
-------------------------------AAAAATATATATCTGAATATGCAAACTGTGTACAACCTACATAAATGGT
GTTTGTCATCAGAACTGTGTGAAAACTGAAATTCAACCCTTTTGAGCAATCTGGATTACCATTGAGCATATCCTTACTTC
TTGTTATTCCATAGGGGGGC----TGTTAATGAACATTATGATATTTTGTCACTGTCGCAGCATATTGAAGTCAATAAGC
TCATCAAAGGAAGGCCCCTAGACAACCTGGAGTTCATGCAGTGGATGAAAAGATACTGTGATTCTGTTAATGGTGGATTC
ATGACCAGGTAGCCAACCCCATTCTTTCTGTAACATATATGACCAG----------------------------------
----TAGTGTTACCAATTGTGCTTATCATATCTCATGAAAATCCTC-------------------------TGAACACGC
AGCTACAATGCTTCCGAGAGAAGAGAAAGCAGCAAGGGTGGGAAAGACACCAACAGAAGGACATCAGGGACTTCCCAGGC
GCCTGCCAAGTCTGCATCTGCCACCCACAAAGCTCAGCCTCCGTCGCATGCTGCTAAGCGAGCCAACGGGCATGCTTCAA
ATGCTCCACAGCGGTGTGCAAGGCCGCCTCCAGCTGCAGCACCAGCTTAT------------GATGCACAGGTGAGAGTG
ACTTGGCATGAACGCTGAGCATAACTTTCTTGCTGTCTCTCGGCATTGCACAAGTCCTGTATTCTGACAATGATGCTTTG
CAGATGACCGAGCTGAAACTCCTTGTTGATAGCGCCGAGAAAGAGAGAGATTTCTATTTCTCTAAGCTGCGGGACGTTGA
GATCTTGTGCCAGAGCCCCGAGGTTGAGCATTTACCGGTAAGTAGCAGAAATGCTTGTAG--------------------
--------------------------------------------------------------------------------
-------------------------------ACATCATGCTTGTAGAGTACAACAGCAGGTGTCTGAACGTCTAAACATC
ATGCTTGTAGAGTACAACAGCAGGTGTCTGAACCTTGATCTATGTATTTGAAAGGGCAATGTTGACGATGAAATCTTTAT
CTTGTGTGCAGATTGTGAAGGCCATCCAGAAGATACTCTATGCTTCGGAGGACGACCCCTCGACGGTGGCGGAAGCCCAG
GCAGAGATGGTGGCGCAGCAGAACCAGATGCAGCAGCAGCCAATGCTGAGCCCGATCCTGGAGGCGTCTGAGGCCCCAAG
CATCACCCCCAAGGATTCTTCCGAGGAGAGCTTGAGGCAGGAAGCAGCGGCAGCACACAAGAGGAAGAGCATCTCGGACC
TGGAGGAGTTCGAGATGGGGTCGAGCTCCAGGATGAGGCTCTCGGACGTCTCGGACGTGCAGCTGTGCGGCTCACCGTTG
ATGAGCTTCACCTGAAAGAAAGGAGGGACCGAATTGCAGGGGCTGAGTTGTTGTCATTACCGGTTATGACTTGTGGGTTT
ATCTTGTGTTGTTTCGTTCGTTGTTTGGTGTTATAATGTGTGTGCTCTTGTGGAGCTGGAGTTGAACCTGCCTTTGACTG
TGATTGATCTGCCACAGCATTTGTGGCCTTCTGCAACATGTTATTATTGAATAGCCTCTTTTATGTAGTCACTGGTGTTC
CTTGCTCTGCCTCTTTTATTGCAGGACGGTCTGTTTTCGACTCCAAAAAGGTTGCTGCGCTGTGACTTTTTTGTTAGCGG
GTATCCCTGGAATACAAATTCTGTGCTGGCGCCTGAATCCTCTTCATCTTTCCCTGTCCGCCGTCGTTGCATTCTCTCCG
CTGGCATCATCGAGCTCGACCAACCTGCCATTATACTCCCTCCGTTCACGATTGAGTCATCTATTTTGGAACGGAGGAAT
TACTGTGCTGGCAA------------------------------------------------------------------
-------------------------------------------------TAATTTTTCTTTGAATTTAGTGTTTTGGTGG
CCCGGTGATTTTTTTGGAGGTGGGTCG-TGCTAATGAAGATTATCTGGTGGCAAAAGGGATATTGCCAATGCACTCTAAT
TAATAAAAGAAGCTCAATG----CGGATGCAAAGGGAACAAGTTGTTGAAGTATCTGGGAAGA-TTTACCTGAGGATTCA
GGTTGCATTTTGATTCTCTTCTGCACTGGCGTCTCTCAGTTATCTACTTATCTGTTTATA-------TTACTGTCGTTTT
CACCATTAAGAC-----------TCTCTTTTGTATTAACATTACTTACTGAATTATGTGTTCACAATACATTTCATATTA
TATAACCATCGAGACTATGTACAGGAGAAGACACTGAGCCTGCAAATACAGACATAGAATGCTCCACATCTAGGGATTCA
GGTCACACTTTGATTCTCTTCTGCATTAACATTACTTCTGAATTATGTGTTC-
>chr1B_416
--------------------------------------------------------------------------------
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---------------AAGTTCGCAGGCTTGGTGGAGCAGAACCACCCGTTCGATCACACGCGATTA---CTCCTCTAGCA
AAAAGCAACGGGCAAAATTCGCTGAAACCGAAAACGCTCCACCGTAGCCCATAGG-CCACAG------------------
-----------CTATGCCAGCCCAACGCGAGTCGCCTTCACACCGCGAGAGACGTGAAGGAGATGCA-------------
-----------------------------------------CCCTGGCCACCCGCGCCGCTCCCAACGGTCGGACGAATC
CGGCCGTCCACCCGCGC-CCTGCGCCCGGGCATACCCGTCGAAATCTGAACCCCTTTCCCAGCCCTGGCCGCACCGTAGA
CCTAGGAGGGCAGAACCGTCCGGCGCAAAAGTCTCTCTCACCTTATATCTCGGCCGAATCCCCAACG-----CCGCATTC
GAAAACCTTCCTCGCGAAACCCCAACCCCGCTCCTCTGCTCTCCTCCT------CCTGGTCCCTCGCGAGAACAGGTCTG
GGTTGCGTCTCCGGCGGCGGAGAAGCAAG-----GGAGGCGGAGATGTCGGTCAGCAACATAGGCATGATGGACGGCGCC
TACTTCGTGGGGCGGAACGAGATCCTCGCCTGGATCAACACCACGCTGCAGCTCAGCCTCGCCAAGGTCGAGGAGGTACG
CACGGATCTCCCCCTCCCCC-CTCCACCTCGTGTTTCAATCGGCTGTTCGTCCCCCGATCCGCGCGGTTTGCCTCCAGGC
GCTGGGGTTCTGCTGGATCTGCGGGTTCGATTCGTTGT-----------GTTTCGGGATGCTGACATGGCGCGCGGCCGG
AATTCTC----GTGTGCAGGCGGCGTCGGGCGCGGTGGCGTGCCAGCTCATGGACGCGGCGCACCCCGGGGCGGTGCCCA
TGCACAAGGTCAACTTCGACGCCAAGAACGAGTACGACATGATCCAGAACTACAAGGTCCTGCAGGATGNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTATGTGGCGTTAGTT
GTATTGCTCATGCCGCCAGATTACTCCGCACACGAGGCTGATTTAGATTTTGGCCGTGCTGTGTGGGCGCGTGTTTGTTC
GGTAGCCTGTAGTTTCTGTAAGAAACGATTGATTGCCCCGAATTCTGATTCTAGATCCAGTGGTATGTACTACTGCATGG
ACTTGGAGAGGACCCAAGGTTGCAACTACGCTTGGTTACCAGAAATTGCAGTGGATTTCTAGAGTTTTGTGTTTTATTTC
AGTGGTGCCAGAGTTGTATGCAGTTCTAAGGTTGAGACAACCGAACAATACCAAGGCATAGAACACTTAGATGCACTAAG
AATTTGTAGGTTTATCAGTTCATTGTGGAGTTGCGGTCACCAGAATTCAATATACAGACACTGAGCCATGAATTAGGCAA
TTGGCTAGTAATTTGATGGGTATATGTAGTTTTGTGGATTGTGGAAGTGAAGGGTCAAGTCATCAATTTTTTAGGCTGCT
AAAAATACGGATCTGAATTAGTTCAAGTTCATAAGCCCAATGAAAAGAAGGTTACCCTATTAGCTATATAGTATTTTTAA
ACTGTGTACAACCTAAATAATGGTGTTTTTTGCTGTGTGGAGAATTGCC-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
GTTTGTCATCAGAACTGTG--AAAACTGAAATTCGATCCTTATGAGCAATCTGGATTATTATTGCTTATATCCTTACTTC
TTTTTATTCCATAGAGACTATTAATGTAACTGAACATTATGATCTTTTCTCACTGTTGCAGCATATTGAAGTGAATAAGC
TCATCAAAGGAAGACCTCTTGACAACTTAGAGTTCATGCAGTGGATGAAAAGATATTGTGATTCTGTCAATGGCGGATTC
ATGACCAGGTACTCAACCCCCTTCTTTCTGTAGCATAGATGACCAATTTAATTGTTGCTATCTCTCAAATGCTCTCAGCC
TGTTTAGTGTTACCAATTGTGCTAATCATATCTGTTTAAAATCCTCTTAACACTTGTCTCTTGTTGTGTTATGAACACAC
AGCTACAATGCTTCTGAGAGAAGAGAAAGTAGCAAGGGTGGGAAAGACACCAACAGAAGGACATCAGGGACTTCCCAGGC
ACCTGCCAAGTCTGCATCCGCCACCCACAAAGCTCAGCCTCCACCGCACGCTGCTAAACGGGCCAATGGGCATGCTTCAA
ATGCTCCACAGCGGTGCGCAAAGCCACCT------------CCAGCTGCAGCGCCAGCTTACGATGCACAGGTGAGAGTG
ACTTGGCATGAGCGCTGAGCATAACGTTCTTGCTGTCTCTCGGCATTGCACAAGTCCTGTATTCTGACAATGATACTTTG
CAGATGACCGAGCTGAAACTCCTTGTTGATAGCGCCGAGAAAGAGAGGGATTTCTATTTCTCCAAGCTGCGGGACGTCGA
GATCTTGTGCCAGAGCCCAGAGGTTGAGCATTTACCGGTAAGTAGCAGAAATGCTTGACCATTCTCCTAGTTTGTGTCAG
TTGCTGAGTTTTAAGCTTGTCAATGATGCAACAGTAGGTCATCATACCCAACTTATTACTGTGTTCAGCACTGTTGACGA
GTCTTAAAAAAAACCTTCTGAACAA--------------------------------------------GTGTAAACACC
ATGCTTGTAGAGTACAACAGCAGG-------------------------------GCAATGTTGATGATGACATCTTTAT
CCTGTGTGCAGATTGTTAAGGCCATCCAGAAGATACTCTACGCTTCGGAGGATGACCCCTCGACGGTGGCAGAAGCCCAG
GCGGAGATGGTGGCGCAGCAGAACCAGATGCAGCAGCAGCCAATGCTGAGCCCGATCCTGGAGGCGTCTGAGGCCCCAAG
CATCACCCCCAAGGATTCTTCCGAGGAGAGCTTGAGGCAGGAAGCAGCGGCAGCACACAAGAGGAAGAGCATCTCGGACC
TGGAGGAGTTCGAGATGGGGTCGAGCTCCAGGATGAGGCTCTCAGACGTCTCGGATGTGCAGCTGTGCGGCTCACCGTTG
ATGAGCTTCACCTGAAAGAAAGGAGGGACCGAATTGCAGGGGCTAAGTTGTTGTCATTGCCG------------------
-------GTTGTTTCGTTTGTTGTTTGGTGTTATAATGTGTGTGC--------------------------CTTTGACTG
TGATCGATCTGCCACAGCATTTGTGGCCTTCTGCAACATGTTATTATTGAATAGCCTCTTTTATGTAGTCACTGGTGCTC
CTTGCTCTGCCTCTTTTATTGCAAGACGGTCTGTTTTCGATTCCCAAAAGGTTGCTGCGCTCTGA---TTTTGTTAGCGG
GTATCCCT---------ATTCTGTGCTGGCGCCTGAATCCTAT-------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------ACGTGAAGCAGTTCAAAATGGGA
ACAAGAAATGGCAACGTGCATCGGAATTTCTACAAATGCAACCATAAGGTAAGTTTTCTTTGAATTTAGTGCTC-GGTGG
CCCTGTGATTTTTTTTGAGGTGGGTCGATGCTAATGAAGA----------------------------------------
-------AGAAGCTCAATG----CGGATGCAAAGGCAAGAAGTCGTTGAAGTATCTGGGAAGA-TTTACCTGAGGATTCA
GGTTGCATTTTGGTTCTCTTCTGCACTGACGTCTCTTAGTTATCTGTTTATATT--------------------------
--------------------------------------------------------------------------------
-------------ACTATGTAAAGGAGAAGACACCGAGCCTGCAAATACAGACATAGAATACTCCACATCTAGGGATTCA
GGTTACACTTTGATTCTCTTCTGCATTAACATTACTTTTGAATTATGTGTTCA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS-----------------------------------------------S----SSS-----------
--------------------------------------------------------SS---SSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS----------------------------------------------S-------S---SS---------
-------------S---------------S--------------------------S-----------------------
-----------------S-----------S--S-----------S-----------------------------------
----------S----------------------------------------------------S-SSSSSSS--------
------------------------------------S----SS-------------------------------------
-----------------------------SSSSS----------------------------------------------
-----------------------------------------S--S-----------------------------------
SS------------------------------------------------------------------------------
-------------------------S-------SS-----S---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--S-------------------------------S----S----S-----------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------------S
--------------------S-----------------------------------------------------S-----
-----------------------------------S--------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------S----------------------------
------------------S---S-------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S-----------------S---------------------------
--------------------------------------------------------------------------------
----------S--------S------------------S------------------------S-----S--S-------
--------------------------------------------------------------------------------
----------------------------------------------S---------------------------------
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---------------------------------------------------S----------------------------
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--------------------------------------------------------S---------S--S-SS-S-S-S-
SSSS-SS-S-SSS--S----------------------------------------------------------------
--S---------S------------SSSSSS-------------------------------------------------
--------------------------------------------------------------------------------
--S-------------------S---------------------------------------------------------
-----------------------------------------------------S--------------S-----------
--------------------------------------------------------------------------------
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--------------------------------------------------S-----------------------------
-------------------------------S------------------------------------------------
--------------------------------------------------------------------------------
--------------S---------------------------S----------------------S--------------
-----------------------------S--------------------------------------------------
-------------------------------S------------------------------------------------
--S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------S---S-SS
----SSSSSS-----------------------------------------S----------------------------
--------------------------------------------------------------------------------
------------SSSSSSSSSSS-------------------S------------S-------S--S-------------
-----S---------S--------S--------------------------S--SS---SSSSSSSS-------------
-------S--SSSSSSSSSSSSS---------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------S-------------------------
>forward_320
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------------------------------------------------------------GACTTGTGGGCCAACGACTA
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>reverse_1241
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----------------------------------------GTTCGTTGCGTTTCGGGATG--------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------
>forward_321
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------ACTTGTGGGCCAACGACTA
G-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------
>reverse_1485
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------CGAGCGAATTTATGTGGCGT----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------
>forward_553
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------GGGAAACATTTACGCCAGCC-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-----------------------------------------------------
>reverse_2372
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------GTGTTGTCAGAACCGCGTGA---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------
>forward_566
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------GCCAGCCCTTTGTC
GAAAAA--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------
>reverse_2419
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TGAAGCACATGAGCAGTCTGG-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------
>forward_1085
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------TCGCCTGGATCAACACTACC-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-----------------------------------------------------
>reverse_3683
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--CGTGTGCAGATTGTGAAGGC----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------
>forward_2710
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------CACTGTCGCAGCACATTGAG----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------
>reverse_4504
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------CCCATCATCAAGGGCCTTGT-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------
