Multiple sequence alignment - TraesCS1A01G167800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G167800 chr1A 100.000 2522 0 0 1 2522 300576008 300578529 0.000000e+00 4658.0
1 TraesCS1A01G167800 chr1A 87.701 1431 104 32 458 1824 300672053 300673475 0.000000e+00 1602.0
2 TraesCS1A01G167800 chr1A 89.723 506 46 1 1023 1522 300944104 300944609 2.120000e-180 641.0
3 TraesCS1A01G167800 chr1D 94.671 1595 53 19 245 1825 247124091 247122515 0.000000e+00 2446.0
4 TraesCS1A01G167800 chr1D 88.354 1142 80 24 590 1698 246971082 246969961 0.000000e+00 1323.0
5 TraesCS1A01G167800 chr1D 89.453 512 48 3 1023 1528 246679943 246679432 2.120000e-180 641.0
6 TraesCS1A01G167800 chr1D 89.600 250 26 0 1 250 413296395 413296146 4.050000e-83 318.0
7 TraesCS1A01G167800 chr1D 94.180 189 11 0 1917 2105 176952970 176953158 3.170000e-74 289.0
8 TraesCS1A01G167800 chr1D 84.752 282 36 6 477 753 246680348 246680069 2.470000e-70 276.0
9 TraesCS1A01G167800 chr1D 85.030 167 8 11 1701 1857 246969922 246969763 1.210000e-33 154.0
10 TraesCS1A01G167800 chr1D 82.812 128 18 4 2329 2453 475932781 475932907 7.370000e-21 111.0
11 TraesCS1A01G167800 chr1D 85.915 71 8 2 1453 1522 247132174 247132105 9.680000e-10 75.0
12 TraesCS1A01G167800 chr1B 92.752 1421 53 17 439 1834 330990929 330992324 0.000000e+00 2008.0
13 TraesCS1A01G167800 chr1B 87.612 1453 102 33 458 1840 331083457 331084901 0.000000e+00 1615.0
14 TraesCS1A01G167800 chr1B 89.764 508 46 4 1027 1528 331363523 331364030 0.000000e+00 645.0
15 TraesCS1A01G167800 chr1B 86.813 364 40 4 2096 2453 330992365 330992726 1.410000e-107 399.0
16 TraesCS1A01G167800 chr1B 85.816 282 33 6 477 753 331363114 331363393 2.450000e-75 292.0
17 TraesCS1A01G167800 chr1B 95.588 68 2 1 2452 2519 330993086 330993152 9.540000e-20 108.0
18 TraesCS1A01G167800 chr1B 88.235 68 8 0 2452 2519 660818016 660818083 5.780000e-12 82.4
19 TraesCS1A01G167800 chr1B 81.053 95 16 2 1429 1522 330839670 330839763 9.680000e-10 75.0
20 TraesCS1A01G167800 chr5B 83.361 601 66 15 946 1522 466844215 466844805 2.220000e-145 525.0
21 TraesCS1A01G167800 chr5B 80.488 123 17 7 2336 2453 214138089 214137969 1.240000e-13 87.9
22 TraesCS1A01G167800 chr5B 88.406 69 8 0 2451 2519 94285950 94286018 1.610000e-12 84.2
23 TraesCS1A01G167800 chr3D 91.566 249 21 0 2 250 591359575 591359823 6.680000e-91 344.0
24 TraesCS1A01G167800 chr3D 89.474 247 26 0 2 248 359604756 359605002 1.880000e-81 313.0
25 TraesCS1A01G167800 chr3D 93.684 190 12 0 1915 2104 142708586 142708775 4.110000e-73 285.0
26 TraesCS1A01G167800 chr3D 93.717 191 11 1 1915 2104 388314822 388314632 4.110000e-73 285.0
27 TraesCS1A01G167800 chr4D 91.463 246 20 1 2 246 36351687 36351442 1.120000e-88 337.0
28 TraesCS1A01G167800 chr4D 93.717 191 12 0 1914 2104 503922212 503922022 1.140000e-73 287.0
29 TraesCS1A01G167800 chr4D 93.651 189 12 0 1917 2105 277419834 277419646 1.480000e-72 283.0
30 TraesCS1A01G167800 chr5D 90.244 246 23 1 2 246 495074708 495074953 1.130000e-83 320.0
31 TraesCS1A01G167800 chr5D 93.333 195 12 1 1911 2104 130661518 130661324 1.140000e-73 287.0
32 TraesCS1A01G167800 chr5D 94.149 188 11 0 1917 2104 350380481 350380294 1.140000e-73 287.0
33 TraesCS1A01G167800 chr7D 89.837 246 25 0 2 247 111729266 111729021 1.460000e-82 316.0
34 TraesCS1A01G167800 chr7D 89.837 246 25 0 2 247 159661038 159661283 1.460000e-82 316.0
35 TraesCS1A01G167800 chr7D 94.180 189 11 0 1916 2104 7707820 7708008 3.170000e-74 289.0
36 TraesCS1A01G167800 chr7D 92.746 193 14 0 1912 2104 531982564 531982372 1.910000e-71 279.0
37 TraesCS1A01G167800 chr7D 84.694 98 11 3 2336 2430 45566931 45566835 7.430000e-16 95.3
38 TraesCS1A01G167800 chr6D 89.474 247 26 0 2 248 340113077 340112831 1.880000e-81 313.0
39 TraesCS1A01G167800 chr6D 81.148 244 33 5 512 746 46860954 46861193 1.540000e-42 183.0
40 TraesCS1A01G167800 chr6D 81.395 129 18 6 2328 2453 3107043 3107168 1.600000e-17 100.0
41 TraesCS1A01G167800 chr6D 73.148 216 52 6 1214 1426 420966627 420966839 3.480000e-09 73.1
42 TraesCS1A01G167800 chrUn 89.157 249 26 1 2 249 127005018 127004770 2.440000e-80 309.0
43 TraesCS1A01G167800 chrUn 88.732 71 8 0 2190 2260 79469794 79469864 1.240000e-13 87.9
44 TraesCS1A01G167800 chr6B 80.738 244 34 7 512 746 116106818 116107057 7.170000e-41 178.0
45 TraesCS1A01G167800 chr6B 81.119 143 19 4 2192 2326 26127178 26127320 9.540000e-20 108.0
46 TraesCS1A01G167800 chr6B 88.235 68 8 0 2455 2522 616943283 616943216 5.780000e-12 82.4
47 TraesCS1A01G167800 chr4B 88.189 127 13 2 2329 2453 659017544 659017418 1.560000e-32 150.0
48 TraesCS1A01G167800 chr4B 88.235 68 8 0 2455 2522 173329074 173329007 5.780000e-12 82.4
49 TraesCS1A01G167800 chr4B 88.235 68 8 0 2455 2522 604499568 604499501 5.780000e-12 82.4
50 TraesCS1A01G167800 chr7B 85.950 121 14 3 2336 2453 486734953 486734833 2.630000e-25 126.0
51 TraesCS1A01G167800 chr2B 81.944 144 19 5 2200 2337 90272322 90272464 5.700000e-22 115.0
52 TraesCS1A01G167800 chr2B 84.034 119 18 1 2336 2453 647601793 647601911 2.050000e-21 113.0
53 TraesCS1A01G167800 chr2B 88.506 87 10 0 2192 2278 757396680 757396766 3.430000e-19 106.0
54 TraesCS1A01G167800 chr2B 88.406 69 8 0 2451 2519 15586740 15586808 1.610000e-12 84.2
55 TraesCS1A01G167800 chr2B 88.406 69 8 0 2451 2519 25805779 25805847 1.610000e-12 84.2
56 TraesCS1A01G167800 chr2B 87.500 72 9 0 2451 2522 762246760 762246689 1.610000e-12 84.2
57 TraesCS1A01G167800 chr2D 88.636 88 10 0 2192 2279 610753819 610753906 9.540000e-20 108.0
58 TraesCS1A01G167800 chr2D 80.882 136 21 2 2190 2320 614365855 614365990 4.440000e-18 102.0
59 TraesCS1A01G167800 chr6A 82.857 105 13 4 2335 2435 360478869 360478972 3.460000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G167800 chr1A 300576008 300578529 2521 False 4658.000000 4658 100.000000 1 2522 1 chr1A.!!$F1 2521
1 TraesCS1A01G167800 chr1A 300672053 300673475 1422 False 1602.000000 1602 87.701000 458 1824 1 chr1A.!!$F2 1366
2 TraesCS1A01G167800 chr1A 300944104 300944609 505 False 641.000000 641 89.723000 1023 1522 1 chr1A.!!$F3 499
3 TraesCS1A01G167800 chr1D 247122515 247124091 1576 True 2446.000000 2446 94.671000 245 1825 1 chr1D.!!$R1 1580
4 TraesCS1A01G167800 chr1D 246969763 246971082 1319 True 738.500000 1323 86.692000 590 1857 2 chr1D.!!$R5 1267
5 TraesCS1A01G167800 chr1D 246679432 246680348 916 True 458.500000 641 87.102500 477 1528 2 chr1D.!!$R4 1051
6 TraesCS1A01G167800 chr1B 331083457 331084901 1444 False 1615.000000 1615 87.612000 458 1840 1 chr1B.!!$F2 1382
7 TraesCS1A01G167800 chr1B 330990929 330993152 2223 False 838.333333 2008 91.717667 439 2519 3 chr1B.!!$F4 2080
8 TraesCS1A01G167800 chr1B 331363114 331364030 916 False 468.500000 645 87.790000 477 1528 2 chr1B.!!$F5 1051
9 TraesCS1A01G167800 chr5B 466844215 466844805 590 False 525.000000 525 83.361000 946 1522 1 chr5B.!!$F2 576

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
170 171 0.036388 AGCAATGTTGATCCCGACGT 60.036 50.0 0.0 0.0 0.0 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1919 2087 0.476771 TCTCTGAACCAAACACCCCC 59.523 55.0 0.0 0.0 0.0 5.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.096596 GAACAGCTCCAGCAGATGC 58.903 57.895 0.48 0.00 42.85 3.91
28 29 4.738198 GCAGATGCTGTAGCGCTA 57.262 55.556 14.45 14.45 45.83 4.26
29 30 2.977700 GCAGATGCTGTAGCGCTAA 58.022 52.632 20.73 3.40 45.83 3.09
30 31 1.290203 GCAGATGCTGTAGCGCTAAA 58.710 50.000 20.73 13.83 45.83 1.85
31 32 1.665679 GCAGATGCTGTAGCGCTAAAA 59.334 47.619 20.73 9.85 45.83 1.52
32 33 2.095853 GCAGATGCTGTAGCGCTAAAAA 59.904 45.455 20.73 5.34 45.83 1.94
33 34 3.786818 GCAGATGCTGTAGCGCTAAAAAG 60.787 47.826 20.73 17.38 45.83 2.27
34 35 3.372206 CAGATGCTGTAGCGCTAAAAAGT 59.628 43.478 20.73 5.62 45.83 2.66
35 36 4.003648 AGATGCTGTAGCGCTAAAAAGTT 58.996 39.130 20.73 9.06 45.83 2.66
36 37 4.455877 AGATGCTGTAGCGCTAAAAAGTTT 59.544 37.500 20.73 8.74 45.83 2.66
37 38 4.561735 TGCTGTAGCGCTAAAAAGTTTT 57.438 36.364 20.73 0.00 45.83 2.43
38 39 4.286910 TGCTGTAGCGCTAAAAAGTTTTG 58.713 39.130 20.73 0.64 45.83 2.44
39 40 3.668656 GCTGTAGCGCTAAAAAGTTTTGG 59.331 43.478 20.73 0.00 0.00 3.28
40 41 4.226761 CTGTAGCGCTAAAAAGTTTTGGG 58.773 43.478 20.73 0.27 0.00 4.12
41 42 2.148916 AGCGCTAAAAAGTTTTGGGC 57.851 45.000 8.99 15.67 37.38 5.36
42 43 0.781787 GCGCTAAAAAGTTTTGGGCG 59.218 50.000 28.24 28.24 46.09 6.13
43 44 0.781787 CGCTAAAAAGTTTTGGGCGC 59.218 50.000 24.49 0.00 42.00 6.53
44 45 0.781787 GCTAAAAAGTTTTGGGCGCG 59.218 50.000 0.00 0.00 0.00 6.86
45 46 0.781787 CTAAAAAGTTTTGGGCGCGC 59.218 50.000 25.94 25.94 0.00 6.86
46 47 0.935366 TAAAAAGTTTTGGGCGCGCG 60.935 50.000 28.44 28.44 0.00 6.86
63 64 2.828784 CGCTGAAAAACGCTATCGC 58.171 52.632 0.00 0.00 39.84 4.58
76 77 3.729526 GCTATCGCGTGCATCATATTT 57.270 42.857 5.77 0.00 0.00 1.40
77 78 4.070581 GCTATCGCGTGCATCATATTTT 57.929 40.909 5.77 0.00 0.00 1.82
78 79 3.842428 GCTATCGCGTGCATCATATTTTG 59.158 43.478 5.77 0.00 0.00 2.44
79 80 2.753989 TCGCGTGCATCATATTTTGG 57.246 45.000 5.77 0.00 0.00 3.28
80 81 1.333308 TCGCGTGCATCATATTTTGGG 59.667 47.619 5.77 0.00 0.00 4.12
81 82 1.490621 GCGTGCATCATATTTTGGGC 58.509 50.000 0.00 0.00 0.00 5.36
82 83 1.067516 GCGTGCATCATATTTTGGGCT 59.932 47.619 0.00 0.00 0.00 5.19
83 84 2.859806 GCGTGCATCATATTTTGGGCTC 60.860 50.000 0.00 0.00 0.00 4.70
84 85 2.287788 CGTGCATCATATTTTGGGCTCC 60.288 50.000 0.00 0.00 0.00 4.70
85 86 1.955778 TGCATCATATTTTGGGCTCCG 59.044 47.619 0.00 0.00 0.00 4.63
86 87 1.270550 GCATCATATTTTGGGCTCCGG 59.729 52.381 0.00 0.00 0.00 5.14
87 88 2.862541 CATCATATTTTGGGCTCCGGA 58.137 47.619 2.93 2.93 0.00 5.14
88 89 3.424703 CATCATATTTTGGGCTCCGGAT 58.575 45.455 3.57 0.00 0.00 4.18
89 90 3.593442 TCATATTTTGGGCTCCGGATT 57.407 42.857 3.57 0.00 0.00 3.01
90 91 3.221771 TCATATTTTGGGCTCCGGATTG 58.778 45.455 3.57 0.00 0.00 2.67
91 92 2.818751 TATTTTGGGCTCCGGATTGT 57.181 45.000 3.57 0.00 0.00 2.71
92 93 1.185315 ATTTTGGGCTCCGGATTGTG 58.815 50.000 3.57 0.00 0.00 3.33
93 94 0.178975 TTTTGGGCTCCGGATTGTGT 60.179 50.000 3.57 0.00 0.00 3.72
94 95 0.893270 TTTGGGCTCCGGATTGTGTG 60.893 55.000 3.57 0.00 0.00 3.82
95 96 3.134127 GGGCTCCGGATTGTGTGC 61.134 66.667 3.57 2.99 0.00 4.57
96 97 3.499737 GGCTCCGGATTGTGTGCG 61.500 66.667 3.57 0.00 41.82 5.34
97 98 4.166011 GCTCCGGATTGTGTGCGC 62.166 66.667 3.57 0.00 40.70 6.09
98 99 2.434884 CTCCGGATTGTGTGCGCT 60.435 61.111 3.57 0.00 40.70 5.92
99 100 2.031919 TCCGGATTGTGTGCGCTT 59.968 55.556 9.73 0.00 40.70 4.68
100 101 1.970917 CTCCGGATTGTGTGCGCTTC 61.971 60.000 3.57 2.14 40.70 3.86
101 102 2.324330 CCGGATTGTGTGCGCTTCA 61.324 57.895 9.73 5.24 40.70 3.02
102 103 1.154413 CGGATTGTGTGCGCTTCAC 60.154 57.895 22.38 22.38 45.82 3.18
110 111 2.884146 GTGCGCTTCACAATTTGCA 58.116 47.368 9.73 0.00 44.98 4.08
111 112 0.503961 GTGCGCTTCACAATTTGCAC 59.496 50.000 9.73 0.00 44.98 4.57
112 113 0.385029 TGCGCTTCACAATTTGCACT 59.615 45.000 9.73 0.00 0.00 4.40
113 114 0.780002 GCGCTTCACAATTTGCACTG 59.220 50.000 0.00 0.00 0.00 3.66
114 115 1.865248 GCGCTTCACAATTTGCACTGT 60.865 47.619 0.00 0.00 0.00 3.55
115 116 2.046313 CGCTTCACAATTTGCACTGTC 58.954 47.619 0.00 0.00 0.00 3.51
116 117 2.287188 CGCTTCACAATTTGCACTGTCT 60.287 45.455 0.00 0.00 0.00 3.41
117 118 3.047796 GCTTCACAATTTGCACTGTCTG 58.952 45.455 0.00 0.00 0.00 3.51
118 119 3.489738 GCTTCACAATTTGCACTGTCTGT 60.490 43.478 0.00 0.00 0.00 3.41
119 120 4.675510 CTTCACAATTTGCACTGTCTGTT 58.324 39.130 0.00 0.00 0.00 3.16
120 121 4.717233 TCACAATTTGCACTGTCTGTTT 57.283 36.364 0.00 0.00 0.00 2.83
121 122 5.070770 TCACAATTTGCACTGTCTGTTTT 57.929 34.783 0.00 0.00 0.00 2.43
122 123 5.477510 TCACAATTTGCACTGTCTGTTTTT 58.522 33.333 0.00 0.00 0.00 1.94
142 143 3.932289 GACACGTGTCCTTGGTCG 58.068 61.111 33.62 0.00 39.07 4.79
143 144 1.066918 GACACGTGTCCTTGGTCGT 59.933 57.895 33.62 2.23 39.07 4.34
144 145 0.938168 GACACGTGTCCTTGGTCGTC 60.938 60.000 33.62 9.07 39.07 4.20
145 146 1.362717 CACGTGTCCTTGGTCGTCT 59.637 57.895 7.58 0.00 34.30 4.18
146 147 0.594602 CACGTGTCCTTGGTCGTCTA 59.405 55.000 7.58 0.00 34.30 2.59
147 148 0.595095 ACGTGTCCTTGGTCGTCTAC 59.405 55.000 0.00 0.00 30.71 2.59
148 149 0.879765 CGTGTCCTTGGTCGTCTACT 59.120 55.000 0.00 0.00 0.00 2.57
149 150 2.079158 CGTGTCCTTGGTCGTCTACTA 58.921 52.381 0.00 0.00 0.00 1.82
150 151 2.485426 CGTGTCCTTGGTCGTCTACTAA 59.515 50.000 0.00 0.00 0.00 2.24
151 152 3.058016 CGTGTCCTTGGTCGTCTACTAAA 60.058 47.826 0.00 0.00 0.00 1.85
152 153 4.483311 GTGTCCTTGGTCGTCTACTAAAG 58.517 47.826 0.00 0.00 0.00 1.85
153 154 3.057033 TGTCCTTGGTCGTCTACTAAAGC 60.057 47.826 0.00 0.00 0.00 3.51
154 155 3.057033 GTCCTTGGTCGTCTACTAAAGCA 60.057 47.826 0.00 0.00 0.00 3.91
155 156 3.575256 TCCTTGGTCGTCTACTAAAGCAA 59.425 43.478 0.00 0.00 0.00 3.91
156 157 4.222145 TCCTTGGTCGTCTACTAAAGCAAT 59.778 41.667 0.00 0.00 0.00 3.56
157 158 4.330074 CCTTGGTCGTCTACTAAAGCAATG 59.670 45.833 0.00 0.00 0.00 2.82
158 159 4.530710 TGGTCGTCTACTAAAGCAATGT 57.469 40.909 0.00 0.00 0.00 2.71
159 160 4.890088 TGGTCGTCTACTAAAGCAATGTT 58.110 39.130 0.00 0.00 0.00 2.71
160 161 4.688879 TGGTCGTCTACTAAAGCAATGTTG 59.311 41.667 0.00 0.00 0.00 3.33
161 162 4.927425 GGTCGTCTACTAAAGCAATGTTGA 59.073 41.667 0.00 0.00 0.00 3.18
162 163 5.581085 GGTCGTCTACTAAAGCAATGTTGAT 59.419 40.000 0.00 0.00 0.00 2.57
163 164 6.237861 GGTCGTCTACTAAAGCAATGTTGATC 60.238 42.308 0.00 0.00 0.00 2.92
164 165 5.810587 TCGTCTACTAAAGCAATGTTGATCC 59.189 40.000 0.00 0.00 0.00 3.36
165 166 5.006746 CGTCTACTAAAGCAATGTTGATCCC 59.993 44.000 0.00 0.00 0.00 3.85
166 167 5.006746 GTCTACTAAAGCAATGTTGATCCCG 59.993 44.000 0.00 0.00 0.00 5.14
167 168 3.950397 ACTAAAGCAATGTTGATCCCGA 58.050 40.909 0.00 0.00 0.00 5.14
168 169 3.689649 ACTAAAGCAATGTTGATCCCGAC 59.310 43.478 0.00 0.00 0.00 4.79
169 170 1.086696 AAGCAATGTTGATCCCGACG 58.913 50.000 0.00 0.00 0.00 5.12
170 171 0.036388 AGCAATGTTGATCCCGACGT 60.036 50.000 0.00 0.00 0.00 4.34
171 172 1.206132 AGCAATGTTGATCCCGACGTA 59.794 47.619 0.00 0.00 0.00 3.57
172 173 2.158957 AGCAATGTTGATCCCGACGTAT 60.159 45.455 0.00 0.00 0.00 3.06
173 174 2.612212 GCAATGTTGATCCCGACGTATT 59.388 45.455 0.00 0.00 0.00 1.89
174 175 3.805422 GCAATGTTGATCCCGACGTATTA 59.195 43.478 0.00 0.00 0.00 0.98
175 176 4.271533 GCAATGTTGATCCCGACGTATTAA 59.728 41.667 0.00 0.00 0.00 1.40
176 177 5.220700 GCAATGTTGATCCCGACGTATTAAA 60.221 40.000 0.00 0.00 0.00 1.52
177 178 6.675971 GCAATGTTGATCCCGACGTATTAAAA 60.676 38.462 0.00 0.00 0.00 1.52
178 179 6.988622 ATGTTGATCCCGACGTATTAAAAA 57.011 33.333 0.00 0.00 0.00 1.94
179 180 6.988622 TGTTGATCCCGACGTATTAAAAAT 57.011 33.333 0.00 0.00 0.00 1.82
180 181 6.777101 TGTTGATCCCGACGTATTAAAAATG 58.223 36.000 0.00 0.00 0.00 2.32
181 182 5.412526 TGATCCCGACGTATTAAAAATGC 57.587 39.130 0.00 0.00 0.00 3.56
182 183 5.120399 TGATCCCGACGTATTAAAAATGCT 58.880 37.500 0.00 0.00 0.00 3.79
183 184 6.282167 TGATCCCGACGTATTAAAAATGCTA 58.718 36.000 0.00 0.00 0.00 3.49
184 185 6.762187 TGATCCCGACGTATTAAAAATGCTAA 59.238 34.615 0.00 0.00 0.00 3.09
185 186 6.981762 TCCCGACGTATTAAAAATGCTAAA 57.018 33.333 0.00 0.00 0.00 1.85
186 187 7.007313 TCCCGACGTATTAAAAATGCTAAAG 57.993 36.000 0.00 0.00 0.00 1.85
187 188 6.594937 TCCCGACGTATTAAAAATGCTAAAGT 59.405 34.615 0.00 0.00 0.00 2.66
188 189 6.685403 CCCGACGTATTAAAAATGCTAAAGTG 59.315 38.462 0.00 0.00 0.00 3.16
189 190 7.413219 CCCGACGTATTAAAAATGCTAAAGTGA 60.413 37.037 0.00 0.00 0.00 3.41
190 191 7.424452 CCGACGTATTAAAAATGCTAAAGTGAC 59.576 37.037 0.00 0.00 0.00 3.67
191 192 7.159818 CGACGTATTAAAAATGCTAAAGTGACG 59.840 37.037 0.00 0.00 0.00 4.35
192 193 6.739550 ACGTATTAAAAATGCTAAAGTGACGC 59.260 34.615 0.00 0.00 0.00 5.19
193 194 6.076812 CGTATTAAAAATGCTAAAGTGACGCG 60.077 38.462 3.53 3.53 0.00 6.01
194 195 1.963747 AAAATGCTAAAGTGACGCGC 58.036 45.000 5.73 0.00 0.00 6.86
195 196 1.156736 AAATGCTAAAGTGACGCGCT 58.843 45.000 5.73 0.00 0.00 5.92
196 197 2.004583 AATGCTAAAGTGACGCGCTA 57.995 45.000 5.73 0.00 0.00 4.26
197 198 2.225068 ATGCTAAAGTGACGCGCTAT 57.775 45.000 5.73 0.00 0.00 2.97
198 199 2.855660 TGCTAAAGTGACGCGCTATA 57.144 45.000 5.73 0.00 0.00 1.31
199 200 3.153676 TGCTAAAGTGACGCGCTATAA 57.846 42.857 5.73 0.00 0.00 0.98
200 201 2.855963 TGCTAAAGTGACGCGCTATAAC 59.144 45.455 5.73 0.00 0.00 1.89
201 202 3.114065 GCTAAAGTGACGCGCTATAACT 58.886 45.455 5.73 0.00 0.00 2.24
202 203 3.550678 GCTAAAGTGACGCGCTATAACTT 59.449 43.478 5.73 5.60 32.60 2.66
203 204 4.032558 GCTAAAGTGACGCGCTATAACTTT 59.967 41.667 21.26 21.26 42.21 2.66
204 205 5.445540 GCTAAAGTGACGCGCTATAACTTTT 60.446 40.000 22.20 10.38 40.52 2.27
205 206 6.237648 GCTAAAGTGACGCGCTATAACTTTTA 60.238 38.462 22.20 10.83 40.52 1.52
206 207 6.657836 AAAGTGACGCGCTATAACTTTTAT 57.342 33.333 15.03 0.00 37.72 1.40
207 208 6.657836 AAGTGACGCGCTATAACTTTTATT 57.342 33.333 5.73 0.00 0.00 1.40
208 209 7.760131 AAGTGACGCGCTATAACTTTTATTA 57.240 32.000 5.73 0.00 0.00 0.98
209 210 7.390918 AGTGACGCGCTATAACTTTTATTAG 57.609 36.000 5.73 0.00 0.00 1.73
210 211 6.420008 AGTGACGCGCTATAACTTTTATTAGG 59.580 38.462 5.73 0.00 0.00 2.69
211 212 5.176223 TGACGCGCTATAACTTTTATTAGGC 59.824 40.000 5.73 0.00 0.00 3.93
212 213 4.149396 ACGCGCTATAACTTTTATTAGGCG 59.851 41.667 5.73 0.00 43.75 5.52
214 215 4.625135 CGCTATAACTTTTATTAGGCGCG 58.375 43.478 0.00 0.00 35.26 6.86
215 216 4.383649 CGCTATAACTTTTATTAGGCGCGA 59.616 41.667 12.10 0.00 38.13 5.87
216 217 5.061808 CGCTATAACTTTTATTAGGCGCGAT 59.938 40.000 12.10 0.00 38.13 4.58
217 218 6.252015 CGCTATAACTTTTATTAGGCGCGATA 59.748 38.462 12.10 0.00 38.13 2.92
218 219 7.043590 CGCTATAACTTTTATTAGGCGCGATAT 60.044 37.037 12.10 0.00 38.13 1.63
219 220 8.601476 GCTATAACTTTTATTAGGCGCGATATT 58.399 33.333 12.10 0.62 0.00 1.28
223 224 7.908193 ACTTTTATTAGGCGCGATATTTTTG 57.092 32.000 12.10 0.00 0.00 2.44
224 225 7.477494 ACTTTTATTAGGCGCGATATTTTTGT 58.523 30.769 12.10 0.00 0.00 2.83
225 226 7.431084 ACTTTTATTAGGCGCGATATTTTTGTG 59.569 33.333 12.10 0.00 0.00 3.33
226 227 4.893424 ATTAGGCGCGATATTTTTGTGT 57.107 36.364 12.10 0.00 0.00 3.72
227 228 2.542766 AGGCGCGATATTTTTGTGTG 57.457 45.000 12.10 0.00 0.00 3.82
228 229 1.132262 AGGCGCGATATTTTTGTGTGG 59.868 47.619 12.10 0.00 0.00 4.17
229 230 0.913876 GCGCGATATTTTTGTGTGGC 59.086 50.000 12.10 0.00 0.00 5.01
230 231 1.544686 CGCGATATTTTTGTGTGGCC 58.455 50.000 0.00 0.00 0.00 5.36
231 232 1.544686 GCGATATTTTTGTGTGGCCG 58.455 50.000 0.00 0.00 0.00 6.13
232 233 1.135517 GCGATATTTTTGTGTGGCCGT 60.136 47.619 0.00 0.00 0.00 5.68
233 234 2.669950 GCGATATTTTTGTGTGGCCGTT 60.670 45.455 0.00 0.00 0.00 4.44
234 235 2.914214 CGATATTTTTGTGTGGCCGTTG 59.086 45.455 0.00 0.00 0.00 4.10
235 236 2.802787 TATTTTTGTGTGGCCGTTGG 57.197 45.000 0.00 0.00 0.00 3.77
236 237 1.115467 ATTTTTGTGTGGCCGTTGGA 58.885 45.000 0.00 0.00 0.00 3.53
237 238 0.457851 TTTTTGTGTGGCCGTTGGAG 59.542 50.000 0.00 0.00 0.00 3.86
238 239 0.394488 TTTTGTGTGGCCGTTGGAGA 60.394 50.000 0.00 0.00 0.00 3.71
239 240 0.179004 TTTGTGTGGCCGTTGGAGAT 60.179 50.000 0.00 0.00 0.00 2.75
240 241 0.888736 TTGTGTGGCCGTTGGAGATG 60.889 55.000 0.00 0.00 0.00 2.90
241 242 2.359850 TGTGGCCGTTGGAGATGC 60.360 61.111 0.00 0.00 0.00 3.91
242 243 2.045926 GTGGCCGTTGGAGATGCT 60.046 61.111 0.00 0.00 0.00 3.79
243 244 1.675641 GTGGCCGTTGGAGATGCTT 60.676 57.895 0.00 0.00 0.00 3.91
250 251 2.420022 CCGTTGGAGATGCTTTAAGTGG 59.580 50.000 0.00 0.00 0.00 4.00
258 259 2.638480 TGCTTTAAGTGGTGACTGCT 57.362 45.000 0.00 0.00 30.61 4.24
282 283 2.798680 ACGATTTCGAGAAGATGACCG 58.201 47.619 7.01 0.00 43.02 4.79
301 302 4.021925 GCACCAGAGTTCCGCCCT 62.022 66.667 0.00 0.00 0.00 5.19
414 415 2.791560 CGTCAGCCAAGTTATCATCTCG 59.208 50.000 0.00 0.00 0.00 4.04
422 423 5.676331 GCCAAGTTATCATCTCGGTTTTTCC 60.676 44.000 0.00 0.00 0.00 3.13
559 576 2.943033 CGATTAATCCGCTTGGGTCTTT 59.057 45.455 9.87 0.00 37.00 2.52
575 592 3.317150 GTCTTTGGAATTTCCTTTGCCG 58.683 45.455 16.25 0.43 37.46 5.69
782 799 8.777865 TCAGTAAAATTCCTTGTACTCATCTG 57.222 34.615 0.00 0.00 0.00 2.90
942 1001 2.668457 GTGATCAGAACCAAGTACGCAG 59.332 50.000 0.00 0.00 0.00 5.18
1287 1398 1.574428 CAAGTACCACAGCAACGGC 59.426 57.895 0.00 0.00 41.61 5.68
1555 1668 1.228831 CCATGGGTTCCAGGTTGCA 60.229 57.895 2.85 0.00 36.75 4.08
1671 1790 3.428999 CGTTGTCAATCTCGATGGGTAGT 60.429 47.826 0.00 0.00 0.00 2.73
1672 1791 3.801114 TGTCAATCTCGATGGGTAGTG 57.199 47.619 0.00 0.00 0.00 2.74
1673 1792 2.159099 TGTCAATCTCGATGGGTAGTGC 60.159 50.000 0.00 0.00 0.00 4.40
1737 1895 0.613572 TCTGTGGATGGTAGTGCGGA 60.614 55.000 0.00 0.00 0.00 5.54
1747 1906 3.202906 TGGTAGTGCGGATTTATCTTGC 58.797 45.455 0.00 0.00 0.00 4.01
1826 1988 8.017373 CGCTGTTTTCTATTGTGGGAATATATG 58.983 37.037 0.00 0.00 0.00 1.78
1859 2027 9.582648 TCATACTATGCTGTAATTGTACTAGGA 57.417 33.333 0.00 0.00 0.00 2.94
1860 2028 9.847706 CATACTATGCTGTAATTGTACTAGGAG 57.152 37.037 0.00 0.00 0.00 3.69
1861 2029 7.899648 ACTATGCTGTAATTGTACTAGGAGT 57.100 36.000 0.00 0.00 0.00 3.85
1862 2030 8.991783 ACTATGCTGTAATTGTACTAGGAGTA 57.008 34.615 0.00 0.00 0.00 2.59
1863 2031 9.589461 ACTATGCTGTAATTGTACTAGGAGTAT 57.411 33.333 0.00 0.00 32.65 2.12
1900 2068 9.704098 CTCTCGTATTAGGAATAAAACTTTTGC 57.296 33.333 0.00 0.00 0.00 3.68
1901 2069 9.444600 TCTCGTATTAGGAATAAAACTTTTGCT 57.555 29.630 0.00 0.00 0.00 3.91
1910 2078 9.476202 AGGAATAAAACTTTTGCTTTGATGTAC 57.524 29.630 0.00 0.00 0.00 2.90
1912 2080 8.601845 AATAAAACTTTTGCTTTGATGTACCC 57.398 30.769 0.00 0.00 0.00 3.69
1913 2081 5.869649 AAACTTTTGCTTTGATGTACCCT 57.130 34.783 0.00 0.00 0.00 4.34
1914 2082 5.869649 AACTTTTGCTTTGATGTACCCTT 57.130 34.783 0.00 0.00 0.00 3.95
1915 2083 5.453567 ACTTTTGCTTTGATGTACCCTTC 57.546 39.130 0.00 0.00 0.00 3.46
1916 2084 5.140454 ACTTTTGCTTTGATGTACCCTTCT 58.860 37.500 0.00 0.00 0.00 2.85
1917 2085 6.303839 ACTTTTGCTTTGATGTACCCTTCTA 58.696 36.000 0.00 0.00 0.00 2.10
1918 2086 6.775629 ACTTTTGCTTTGATGTACCCTTCTAA 59.224 34.615 0.00 0.00 0.00 2.10
1919 2087 6.817765 TTTGCTTTGATGTACCCTTCTAAG 57.182 37.500 0.00 0.00 33.66 2.18
1920 2088 4.843728 TGCTTTGATGTACCCTTCTAAGG 58.156 43.478 1.47 1.47 46.06 2.69
1930 2098 2.215942 CCTTCTAAGGGGGTGTTTGG 57.784 55.000 0.42 0.00 42.66 3.28
1931 2099 1.427753 CCTTCTAAGGGGGTGTTTGGT 59.572 52.381 0.42 0.00 42.66 3.67
1932 2100 2.158370 CCTTCTAAGGGGGTGTTTGGTT 60.158 50.000 0.42 0.00 42.66 3.67
1933 2101 2.963599 TCTAAGGGGGTGTTTGGTTC 57.036 50.000 0.00 0.00 0.00 3.62
1934 2102 2.136863 TCTAAGGGGGTGTTTGGTTCA 58.863 47.619 0.00 0.00 0.00 3.18
1935 2103 2.107552 TCTAAGGGGGTGTTTGGTTCAG 59.892 50.000 0.00 0.00 0.00 3.02
1936 2104 0.930726 AAGGGGGTGTTTGGTTCAGA 59.069 50.000 0.00 0.00 0.00 3.27
1937 2105 0.478507 AGGGGGTGTTTGGTTCAGAG 59.521 55.000 0.00 0.00 0.00 3.35
1938 2106 0.476771 GGGGGTGTTTGGTTCAGAGA 59.523 55.000 0.00 0.00 0.00 3.10
1939 2107 1.605753 GGGGTGTTTGGTTCAGAGAC 58.394 55.000 0.00 0.00 0.00 3.36
1940 2108 1.143073 GGGGTGTTTGGTTCAGAGACT 59.857 52.381 0.00 0.00 0.00 3.24
1941 2109 2.422945 GGGGTGTTTGGTTCAGAGACTT 60.423 50.000 0.00 0.00 0.00 3.01
1942 2110 3.288092 GGGTGTTTGGTTCAGAGACTTT 58.712 45.455 0.00 0.00 0.00 2.66
1943 2111 3.699538 GGGTGTTTGGTTCAGAGACTTTT 59.300 43.478 0.00 0.00 0.00 2.27
1944 2112 4.159693 GGGTGTTTGGTTCAGAGACTTTTT 59.840 41.667 0.00 0.00 0.00 1.94
1945 2113 5.358725 GGGTGTTTGGTTCAGAGACTTTTTA 59.641 40.000 0.00 0.00 0.00 1.52
1946 2114 6.459710 GGGTGTTTGGTTCAGAGACTTTTTAG 60.460 42.308 0.00 0.00 0.00 1.85
1947 2115 6.095021 GGTGTTTGGTTCAGAGACTTTTTAGT 59.905 38.462 0.00 0.00 0.00 2.24
1948 2116 7.187480 GTGTTTGGTTCAGAGACTTTTTAGTC 58.813 38.462 0.00 0.00 39.00 2.59
1949 2117 6.317893 TGTTTGGTTCAGAGACTTTTTAGTCC 59.682 38.462 1.88 0.00 39.50 3.85
1950 2118 4.969484 TGGTTCAGAGACTTTTTAGTCCC 58.031 43.478 1.88 0.00 39.50 4.46
1951 2119 4.410883 TGGTTCAGAGACTTTTTAGTCCCA 59.589 41.667 1.88 0.00 39.50 4.37
1952 2120 4.998033 GGTTCAGAGACTTTTTAGTCCCAG 59.002 45.833 1.88 0.00 39.50 4.45
1953 2121 5.221661 GGTTCAGAGACTTTTTAGTCCCAGA 60.222 44.000 1.88 0.00 39.50 3.86
1954 2122 6.468543 GTTCAGAGACTTTTTAGTCCCAGAT 58.531 40.000 1.88 0.00 39.50 2.90
1955 2123 7.310485 GGTTCAGAGACTTTTTAGTCCCAGATA 60.310 40.741 1.88 0.00 39.50 1.98
1956 2124 7.171630 TCAGAGACTTTTTAGTCCCAGATAC 57.828 40.000 1.88 0.00 39.50 2.24
1957 2125 6.954684 TCAGAGACTTTTTAGTCCCAGATACT 59.045 38.462 1.88 0.00 39.50 2.12
1958 2126 8.114102 TCAGAGACTTTTTAGTCCCAGATACTA 58.886 37.037 1.88 0.00 39.50 1.82
1959 2127 8.410141 CAGAGACTTTTTAGTCCCAGATACTAG 58.590 40.741 1.88 0.00 39.50 2.57
1960 2128 8.337739 AGAGACTTTTTAGTCCCAGATACTAGA 58.662 37.037 0.00 0.00 39.50 2.43
1961 2129 8.896722 AGACTTTTTAGTCCCAGATACTAGAA 57.103 34.615 0.00 0.00 39.50 2.10
1962 2130 9.322769 AGACTTTTTAGTCCCAGATACTAGAAA 57.677 33.333 0.00 0.00 39.50 2.52
1963 2131 9.939802 GACTTTTTAGTCCCAGATACTAGAAAA 57.060 33.333 0.00 0.00 34.81 2.29
1988 2156 8.418597 AAATCCTTAAAAAGTCCCTAGAAACC 57.581 34.615 0.00 0.00 0.00 3.27
1989 2157 6.518516 TCCTTAAAAAGTCCCTAGAAACCA 57.481 37.500 0.00 0.00 0.00 3.67
1990 2158 6.913545 TCCTTAAAAAGTCCCTAGAAACCAA 58.086 36.000 0.00 0.00 0.00 3.67
1991 2159 7.355890 TCCTTAAAAAGTCCCTAGAAACCAAA 58.644 34.615 0.00 0.00 0.00 3.28
1992 2160 7.286087 TCCTTAAAAAGTCCCTAGAAACCAAAC 59.714 37.037 0.00 0.00 0.00 2.93
1993 2161 7.068962 CCTTAAAAAGTCCCTAGAAACCAAACA 59.931 37.037 0.00 0.00 0.00 2.83
1994 2162 6.465439 AAAAAGTCCCTAGAAACCAAACAG 57.535 37.500 0.00 0.00 0.00 3.16
1995 2163 3.790089 AGTCCCTAGAAACCAAACAGG 57.210 47.619 0.00 0.00 45.67 4.00
1996 2164 3.323775 AGTCCCTAGAAACCAAACAGGA 58.676 45.455 0.00 0.00 41.22 3.86
1997 2165 3.328050 AGTCCCTAGAAACCAAACAGGAG 59.672 47.826 0.00 0.00 41.22 3.69
1998 2166 2.642807 TCCCTAGAAACCAAACAGGAGG 59.357 50.000 0.00 0.00 41.22 4.30
1999 2167 2.642807 CCCTAGAAACCAAACAGGAGGA 59.357 50.000 0.00 0.00 41.22 3.71
2000 2168 3.073946 CCCTAGAAACCAAACAGGAGGAA 59.926 47.826 0.00 0.00 41.22 3.36
2001 2169 4.072839 CCTAGAAACCAAACAGGAGGAAC 58.927 47.826 0.00 0.00 41.22 3.62
2003 2171 4.251103 AGAAACCAAACAGGAGGAACTT 57.749 40.909 0.00 0.00 41.55 2.66
2004 2172 4.610333 AGAAACCAAACAGGAGGAACTTT 58.390 39.130 0.00 0.00 41.55 2.66
2005 2173 5.023452 AGAAACCAAACAGGAGGAACTTTT 58.977 37.500 0.00 0.00 41.55 2.27
2006 2174 5.483937 AGAAACCAAACAGGAGGAACTTTTT 59.516 36.000 0.00 0.00 41.55 1.94
2007 2175 5.339008 AACCAAACAGGAGGAACTTTTTC 57.661 39.130 0.00 0.00 41.55 2.29
2008 2176 4.610333 ACCAAACAGGAGGAACTTTTTCT 58.390 39.130 0.00 0.00 41.55 2.52
2009 2177 5.762279 ACCAAACAGGAGGAACTTTTTCTA 58.238 37.500 0.00 0.00 41.55 2.10
2010 2178 5.593095 ACCAAACAGGAGGAACTTTTTCTAC 59.407 40.000 0.00 0.00 41.55 2.59
2011 2179 5.592688 CCAAACAGGAGGAACTTTTTCTACA 59.407 40.000 0.00 0.00 41.55 2.74
2012 2180 6.238759 CCAAACAGGAGGAACTTTTTCTACAG 60.239 42.308 0.00 0.00 41.55 2.74
2013 2181 4.974399 ACAGGAGGAACTTTTTCTACAGG 58.026 43.478 0.00 0.00 41.55 4.00
2014 2182 4.202472 ACAGGAGGAACTTTTTCTACAGGG 60.202 45.833 0.00 0.00 41.55 4.45
2015 2183 4.041691 CAGGAGGAACTTTTTCTACAGGGA 59.958 45.833 0.00 0.00 41.55 4.20
2016 2184 4.041815 AGGAGGAACTTTTTCTACAGGGAC 59.958 45.833 0.00 0.00 41.55 4.46
2017 2185 4.041815 GGAGGAACTTTTTCTACAGGGACT 59.958 45.833 0.00 0.00 41.55 3.85
2018 2186 5.247792 GGAGGAACTTTTTCTACAGGGACTA 59.752 44.000 0.00 0.00 41.55 2.59
2019 2187 6.361768 AGGAACTTTTTCTACAGGGACTAG 57.638 41.667 0.00 0.00 28.08 2.57
2020 2188 6.082707 AGGAACTTTTTCTACAGGGACTAGA 58.917 40.000 0.00 0.00 28.08 2.43
2021 2189 6.557633 AGGAACTTTTTCTACAGGGACTAGAA 59.442 38.462 0.00 0.00 28.08 2.10
2022 2190 7.072076 AGGAACTTTTTCTACAGGGACTAGAAA 59.928 37.037 0.00 0.00 38.08 2.52
2023 2191 7.718314 GGAACTTTTTCTACAGGGACTAGAAAA 59.282 37.037 0.00 8.58 43.60 2.29
2027 2195 8.672823 TTTTTCTACAGGGACTAGAAAAAGAC 57.327 34.615 16.61 0.00 46.05 3.01
2028 2196 7.613551 TTTCTACAGGGACTAGAAAAAGACT 57.386 36.000 0.00 0.00 37.31 3.24
2029 2197 6.837471 TCTACAGGGACTAGAAAAAGACTC 57.163 41.667 0.00 0.00 36.02 3.36
2030 2198 6.553857 TCTACAGGGACTAGAAAAAGACTCT 58.446 40.000 0.00 0.00 36.02 3.24
2031 2199 7.696981 TCTACAGGGACTAGAAAAAGACTCTA 58.303 38.462 0.00 0.00 36.02 2.43
2032 2200 6.593268 ACAGGGACTAGAAAAAGACTCTAC 57.407 41.667 0.00 0.00 36.02 2.59
2033 2201 6.316513 ACAGGGACTAGAAAAAGACTCTACT 58.683 40.000 0.00 0.00 36.02 2.57
2034 2202 7.468496 ACAGGGACTAGAAAAAGACTCTACTA 58.532 38.462 0.00 0.00 36.02 1.82
2035 2203 7.612633 ACAGGGACTAGAAAAAGACTCTACTAG 59.387 40.741 0.00 0.00 36.02 2.57
2036 2204 7.830201 CAGGGACTAGAAAAAGACTCTACTAGA 59.170 40.741 0.00 0.00 36.02 2.43
2037 2205 8.050930 AGGGACTAGAAAAAGACTCTACTAGAG 58.949 40.741 11.06 11.06 42.94 2.43
2038 2206 8.048514 GGGACTAGAAAAAGACTCTACTAGAGA 58.951 40.741 18.41 0.00 45.07 3.10
2090 2258 8.840833 AGAAAAAGTTCTAGGACTTCTGAATC 57.159 34.615 16.98 10.52 42.53 2.52
2091 2259 8.432805 AGAAAAAGTTCTAGGACTTCTGAATCA 58.567 33.333 16.98 0.00 42.53 2.57
2092 2260 8.980481 AAAAAGTTCTAGGACTTCTGAATCAA 57.020 30.769 16.98 0.00 38.86 2.57
2093 2261 8.980481 AAAAGTTCTAGGACTTCTGAATCAAA 57.020 30.769 16.98 0.00 38.86 2.69
2094 2262 7.971183 AAGTTCTAGGACTTCTGAATCAAAC 57.029 36.000 10.89 0.00 34.94 2.93
2095 2263 7.067496 AGTTCTAGGACTTCTGAATCAAACA 57.933 36.000 0.00 0.00 0.00 2.83
2099 2267 2.820197 GGACTTCTGAATCAAACACCCC 59.180 50.000 0.00 0.00 0.00 4.95
2120 2288 2.811431 CCTAAACACATTGACGGCTGAA 59.189 45.455 0.00 0.00 0.00 3.02
2123 2291 3.559238 AACACATTGACGGCTGAAATC 57.441 42.857 0.00 0.00 0.00 2.17
2130 2298 6.648310 CACATTGACGGCTGAAATCTCTATAT 59.352 38.462 0.00 0.00 0.00 0.86
2131 2299 7.814587 CACATTGACGGCTGAAATCTCTATATA 59.185 37.037 0.00 0.00 0.00 0.86
2134 2302 5.106277 TGACGGCTGAAATCTCTATATACCG 60.106 44.000 0.00 0.00 42.42 4.02
2136 2304 5.106237 ACGGCTGAAATCTCTATATACCGTC 60.106 44.000 0.00 0.00 46.30 4.79
2153 2321 9.986157 ATATACCGTCTCATAATAAAGGGTAGA 57.014 33.333 0.00 0.00 36.08 2.59
2157 2325 6.874134 CCGTCTCATAATAAAGGGTAGAATGG 59.126 42.308 0.00 0.00 0.00 3.16
2159 2327 7.599245 CGTCTCATAATAAAGGGTAGAATGGTC 59.401 40.741 0.00 0.00 0.00 4.02
2160 2328 8.429641 GTCTCATAATAAAGGGTAGAATGGTCA 58.570 37.037 0.00 0.00 0.00 4.02
2170 2338 2.879103 AGAATGGTCATTTCACCCGT 57.121 45.000 0.00 0.00 35.26 5.28
2178 2346 0.655733 CATTTCACCCGTGCCGATAC 59.344 55.000 0.00 0.00 0.00 2.24
2181 2349 4.805231 CACCCGTGCCGATACGCA 62.805 66.667 5.98 0.00 42.44 5.24
2206 2374 1.267732 GCGCATGAATCGAACTCAAGG 60.268 52.381 0.30 2.68 0.00 3.61
2207 2375 1.267732 CGCATGAATCGAACTCAAGGC 60.268 52.381 0.00 13.43 0.00 4.35
2244 2412 3.911260 TGGACCACACTAACCAATTAGGA 59.089 43.478 0.00 0.00 41.98 2.94
2261 2429 0.657840 GGACATCCTAATGCGTGTGC 59.342 55.000 0.00 0.00 43.20 4.57
2297 2470 3.909776 TTCTTCTACTTCACTTCGCGA 57.090 42.857 3.71 3.71 0.00 5.87
2304 2477 3.158537 TTCACTTCGCGACTGGGCA 62.159 57.895 9.15 0.00 0.00 5.36
2305 2478 2.652382 TTCACTTCGCGACTGGGCAA 62.652 55.000 9.15 0.07 0.00 4.52
2307 2480 3.793144 CTTCGCGACTGGGCAAGC 61.793 66.667 9.15 0.00 0.00 4.01
2339 2512 9.362539 GTTGAATCGGTTCTTTTATCACTACTA 57.637 33.333 10.29 0.00 35.33 1.82
2353 2526 1.278127 ACTACTAGCAAACATGCCCGT 59.722 47.619 0.00 0.00 34.90 5.28
2363 2536 3.372730 ATGCCCGTGCGTTGCAAT 61.373 55.556 0.59 0.00 41.47 3.56
2373 2546 2.863137 GTGCGTTGCAATGGAAGAAAAA 59.137 40.909 19.93 0.00 41.47 1.94
2432 2605 3.125829 TCTCTTGAAATCTTGCATGACGC 59.874 43.478 4.14 0.00 42.89 5.19
2457 2991 7.467811 GCCAGATGAAAACAACATGATACCTAG 60.468 40.741 0.00 0.00 0.00 3.02
2498 3032 1.860676 TTTGTTGTCGTTCCTCCTCG 58.139 50.000 0.00 0.00 0.00 4.63
2519 3053 7.068103 TCCTCGGTGATGTGCAATAAATATTTT 59.932 33.333 5.91 0.00 0.00 1.82
2520 3054 7.379529 CCTCGGTGATGTGCAATAAATATTTTC 59.620 37.037 5.91 0.00 0.00 2.29
2521 3055 7.766283 TCGGTGATGTGCAATAAATATTTTCA 58.234 30.769 5.91 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.096596 GCATCTGCTGGAGCTGTTC 58.903 57.895 0.00 0.00 42.66 3.18
1 2 4.315588 GCATCTGCTGGAGCTGTT 57.684 55.556 0.00 0.00 42.66 3.16
11 12 1.290203 TTTAGCGCTACAGCATCTGC 58.710 50.000 18.63 0.00 42.21 4.26
12 13 3.372206 ACTTTTTAGCGCTACAGCATCTG 59.628 43.478 18.63 4.93 42.21 2.90
13 14 3.600388 ACTTTTTAGCGCTACAGCATCT 58.400 40.909 18.63 0.58 42.21 2.90
14 15 4.342352 AACTTTTTAGCGCTACAGCATC 57.658 40.909 18.63 0.00 42.21 3.91
15 16 4.766404 AAACTTTTTAGCGCTACAGCAT 57.234 36.364 18.63 0.00 42.21 3.79
16 17 4.286910 CAAAACTTTTTAGCGCTACAGCA 58.713 39.130 18.63 0.00 42.21 4.41
17 18 3.668656 CCAAAACTTTTTAGCGCTACAGC 59.331 43.478 18.63 0.00 37.78 4.40
18 19 4.226761 CCCAAAACTTTTTAGCGCTACAG 58.773 43.478 18.63 15.46 0.00 2.74
19 20 3.551250 GCCCAAAACTTTTTAGCGCTACA 60.551 43.478 18.63 8.18 0.00 2.74
20 21 2.984471 GCCCAAAACTTTTTAGCGCTAC 59.016 45.455 18.63 0.00 0.00 3.58
21 22 2.350964 CGCCCAAAACTTTTTAGCGCTA 60.351 45.455 14.45 14.45 41.67 4.26
22 23 1.601914 CGCCCAAAACTTTTTAGCGCT 60.602 47.619 17.26 17.26 41.67 5.92
23 24 0.781787 CGCCCAAAACTTTTTAGCGC 59.218 50.000 14.39 0.00 41.67 5.92
24 25 0.781787 GCGCCCAAAACTTTTTAGCG 59.218 50.000 19.19 19.19 46.24 4.26
25 26 0.781787 CGCGCCCAAAACTTTTTAGC 59.218 50.000 0.00 0.00 0.00 3.09
26 27 0.781787 GCGCGCCCAAAACTTTTTAG 59.218 50.000 23.24 0.00 0.00 1.85
27 28 0.935366 CGCGCGCCCAAAACTTTTTA 60.935 50.000 27.72 0.00 0.00 1.52
28 29 2.234335 CGCGCGCCCAAAACTTTTT 61.234 52.632 27.72 0.00 0.00 1.94
29 30 2.656973 CGCGCGCCCAAAACTTTT 60.657 55.556 27.72 0.00 0.00 2.27
57 58 4.397382 CCAAAATATGATGCACGCGATAG 58.603 43.478 15.93 2.87 0.00 2.08
58 59 3.188254 CCCAAAATATGATGCACGCGATA 59.812 43.478 15.93 0.00 0.00 2.92
59 60 2.030893 CCCAAAATATGATGCACGCGAT 60.031 45.455 15.93 0.00 0.00 4.58
60 61 1.333308 CCCAAAATATGATGCACGCGA 59.667 47.619 15.93 0.00 0.00 5.87
61 62 1.757574 CCCAAAATATGATGCACGCG 58.242 50.000 3.53 3.53 0.00 6.01
62 63 1.067516 AGCCCAAAATATGATGCACGC 59.932 47.619 0.00 0.00 0.00 5.34
63 64 2.287788 GGAGCCCAAAATATGATGCACG 60.288 50.000 0.00 0.00 0.00 5.34
64 65 2.287788 CGGAGCCCAAAATATGATGCAC 60.288 50.000 0.00 0.00 0.00 4.57
65 66 1.955778 CGGAGCCCAAAATATGATGCA 59.044 47.619 0.00 0.00 0.00 3.96
66 67 1.270550 CCGGAGCCCAAAATATGATGC 59.729 52.381 0.00 0.00 0.00 3.91
67 68 2.862541 TCCGGAGCCCAAAATATGATG 58.137 47.619 0.00 0.00 0.00 3.07
68 69 3.814504 ATCCGGAGCCCAAAATATGAT 57.185 42.857 11.34 0.00 0.00 2.45
69 70 3.221771 CAATCCGGAGCCCAAAATATGA 58.778 45.455 11.34 0.00 0.00 2.15
70 71 2.958355 ACAATCCGGAGCCCAAAATATG 59.042 45.455 11.34 0.00 0.00 1.78
71 72 2.958355 CACAATCCGGAGCCCAAAATAT 59.042 45.455 11.34 0.00 0.00 1.28
72 73 2.291282 ACACAATCCGGAGCCCAAAATA 60.291 45.455 11.34 0.00 0.00 1.40
73 74 1.185315 CACAATCCGGAGCCCAAAAT 58.815 50.000 11.34 0.00 0.00 1.82
74 75 0.178975 ACACAATCCGGAGCCCAAAA 60.179 50.000 11.34 0.00 0.00 2.44
75 76 0.893270 CACACAATCCGGAGCCCAAA 60.893 55.000 11.34 0.00 0.00 3.28
76 77 1.303236 CACACAATCCGGAGCCCAA 60.303 57.895 11.34 0.00 0.00 4.12
77 78 2.350895 CACACAATCCGGAGCCCA 59.649 61.111 11.34 0.00 0.00 5.36
78 79 3.134127 GCACACAATCCGGAGCCC 61.134 66.667 11.34 0.00 0.00 5.19
79 80 3.499737 CGCACACAATCCGGAGCC 61.500 66.667 11.34 0.00 0.00 4.70
80 81 4.166011 GCGCACACAATCCGGAGC 62.166 66.667 11.34 5.57 0.00 4.70
81 82 1.970917 GAAGCGCACACAATCCGGAG 61.971 60.000 11.34 0.00 0.00 4.63
82 83 2.031919 AAGCGCACACAATCCGGA 59.968 55.556 6.61 6.61 0.00 5.14
83 84 2.324330 TGAAGCGCACACAATCCGG 61.324 57.895 11.47 0.00 0.00 5.14
84 85 1.154413 GTGAAGCGCACACAATCCG 60.154 57.895 25.06 0.00 46.91 4.18
85 86 4.847255 GTGAAGCGCACACAATCC 57.153 55.556 25.06 5.06 46.91 3.01
93 94 0.385029 AGTGCAAATTGTGAAGCGCA 59.615 45.000 11.47 0.00 39.78 6.09
94 95 0.780002 CAGTGCAAATTGTGAAGCGC 59.220 50.000 0.00 0.00 37.74 5.92
95 96 2.046313 GACAGTGCAAATTGTGAAGCG 58.954 47.619 4.67 0.00 0.00 4.68
96 97 3.047796 CAGACAGTGCAAATTGTGAAGC 58.952 45.455 4.67 0.00 0.00 3.86
97 98 4.297299 ACAGACAGTGCAAATTGTGAAG 57.703 40.909 4.67 0.00 0.00 3.02
98 99 4.717233 AACAGACAGTGCAAATTGTGAA 57.283 36.364 4.67 0.00 0.00 3.18
99 100 4.717233 AAACAGACAGTGCAAATTGTGA 57.283 36.364 4.67 0.00 0.00 3.58
100 101 5.783100 AAAAACAGACAGTGCAAATTGTG 57.217 34.783 4.67 0.00 0.00 3.33
125 126 0.938168 GACGACCAAGGACACGTGTC 60.938 60.000 35.26 35.26 44.04 3.67
126 127 1.066918 GACGACCAAGGACACGTGT 59.933 57.895 23.64 23.64 39.04 4.49
127 128 0.594602 TAGACGACCAAGGACACGTG 59.405 55.000 15.48 15.48 39.04 4.49
128 129 0.595095 GTAGACGACCAAGGACACGT 59.405 55.000 0.00 0.00 41.57 4.49
129 130 0.879765 AGTAGACGACCAAGGACACG 59.120 55.000 0.00 0.00 0.00 4.49
130 131 4.483311 CTTTAGTAGACGACCAAGGACAC 58.517 47.826 0.00 0.00 0.00 3.67
131 132 3.057033 GCTTTAGTAGACGACCAAGGACA 60.057 47.826 0.00 0.00 0.00 4.02
132 133 3.057033 TGCTTTAGTAGACGACCAAGGAC 60.057 47.826 0.00 0.00 0.00 3.85
133 134 3.159472 TGCTTTAGTAGACGACCAAGGA 58.841 45.455 0.00 0.00 0.00 3.36
134 135 3.587797 TGCTTTAGTAGACGACCAAGG 57.412 47.619 0.00 0.00 0.00 3.61
135 136 4.929808 ACATTGCTTTAGTAGACGACCAAG 59.070 41.667 0.00 0.00 0.00 3.61
136 137 4.890088 ACATTGCTTTAGTAGACGACCAA 58.110 39.130 0.00 0.00 0.00 3.67
137 138 4.530710 ACATTGCTTTAGTAGACGACCA 57.469 40.909 0.00 0.00 0.00 4.02
138 139 4.927425 TCAACATTGCTTTAGTAGACGACC 59.073 41.667 0.00 0.00 0.00 4.79
139 140 6.237861 GGATCAACATTGCTTTAGTAGACGAC 60.238 42.308 0.00 0.00 0.00 4.34
140 141 5.810587 GGATCAACATTGCTTTAGTAGACGA 59.189 40.000 0.00 0.00 0.00 4.20
141 142 5.006746 GGGATCAACATTGCTTTAGTAGACG 59.993 44.000 0.00 0.00 0.00 4.18
142 143 5.006746 CGGGATCAACATTGCTTTAGTAGAC 59.993 44.000 0.00 0.00 0.00 2.59
143 144 5.105106 TCGGGATCAACATTGCTTTAGTAGA 60.105 40.000 0.00 0.00 0.00 2.59
144 145 5.006746 GTCGGGATCAACATTGCTTTAGTAG 59.993 44.000 0.00 0.00 0.00 2.57
145 146 4.873827 GTCGGGATCAACATTGCTTTAGTA 59.126 41.667 0.00 0.00 0.00 1.82
146 147 3.689649 GTCGGGATCAACATTGCTTTAGT 59.310 43.478 0.00 0.00 0.00 2.24
147 148 3.242413 CGTCGGGATCAACATTGCTTTAG 60.242 47.826 0.00 0.00 0.00 1.85
148 149 2.675844 CGTCGGGATCAACATTGCTTTA 59.324 45.455 0.00 0.00 0.00 1.85
149 150 1.468520 CGTCGGGATCAACATTGCTTT 59.531 47.619 0.00 0.00 0.00 3.51
150 151 1.086696 CGTCGGGATCAACATTGCTT 58.913 50.000 0.00 0.00 0.00 3.91
151 152 0.036388 ACGTCGGGATCAACATTGCT 60.036 50.000 0.00 0.00 0.00 3.91
152 153 1.647346 TACGTCGGGATCAACATTGC 58.353 50.000 0.00 0.00 0.00 3.56
153 154 5.977171 TTAATACGTCGGGATCAACATTG 57.023 39.130 0.00 0.00 0.00 2.82
154 155 6.988622 TTTTAATACGTCGGGATCAACATT 57.011 33.333 0.00 0.00 0.00 2.71
155 156 6.988622 TTTTTAATACGTCGGGATCAACAT 57.011 33.333 0.00 0.00 0.00 2.71
156 157 6.675971 GCATTTTTAATACGTCGGGATCAACA 60.676 38.462 0.00 0.00 0.00 3.33
157 158 5.679792 GCATTTTTAATACGTCGGGATCAAC 59.320 40.000 0.00 0.00 0.00 3.18
158 159 5.587043 AGCATTTTTAATACGTCGGGATCAA 59.413 36.000 0.00 0.00 0.00 2.57
159 160 5.120399 AGCATTTTTAATACGTCGGGATCA 58.880 37.500 0.00 0.00 0.00 2.92
160 161 5.668558 AGCATTTTTAATACGTCGGGATC 57.331 39.130 0.00 0.00 0.00 3.36
161 162 7.281549 ACTTTAGCATTTTTAATACGTCGGGAT 59.718 33.333 0.00 0.00 0.00 3.85
162 163 6.594937 ACTTTAGCATTTTTAATACGTCGGGA 59.405 34.615 0.00 0.00 0.00 5.14
163 164 6.685403 CACTTTAGCATTTTTAATACGTCGGG 59.315 38.462 0.00 0.00 0.00 5.14
164 165 7.424452 GTCACTTTAGCATTTTTAATACGTCGG 59.576 37.037 0.00 0.00 0.00 4.79
165 166 7.159818 CGTCACTTTAGCATTTTTAATACGTCG 59.840 37.037 0.00 0.00 0.00 5.12
166 167 7.045804 GCGTCACTTTAGCATTTTTAATACGTC 60.046 37.037 0.00 0.00 0.00 4.34
167 168 6.739550 GCGTCACTTTAGCATTTTTAATACGT 59.260 34.615 0.00 0.00 0.00 3.57
168 169 6.076812 CGCGTCACTTTAGCATTTTTAATACG 60.077 38.462 0.00 0.00 0.00 3.06
169 170 6.290385 GCGCGTCACTTTAGCATTTTTAATAC 60.290 38.462 8.43 0.00 0.00 1.89
170 171 5.735427 GCGCGTCACTTTAGCATTTTTAATA 59.265 36.000 8.43 0.00 0.00 0.98
171 172 4.557301 GCGCGTCACTTTAGCATTTTTAAT 59.443 37.500 8.43 0.00 0.00 1.40
172 173 3.909574 GCGCGTCACTTTAGCATTTTTAA 59.090 39.130 8.43 0.00 0.00 1.52
173 174 3.187637 AGCGCGTCACTTTAGCATTTTTA 59.812 39.130 8.43 0.00 0.00 1.52
174 175 2.031157 AGCGCGTCACTTTAGCATTTTT 60.031 40.909 8.43 0.00 0.00 1.94
175 176 1.535462 AGCGCGTCACTTTAGCATTTT 59.465 42.857 8.43 0.00 0.00 1.82
176 177 1.156736 AGCGCGTCACTTTAGCATTT 58.843 45.000 8.43 0.00 0.00 2.32
177 178 2.004583 TAGCGCGTCACTTTAGCATT 57.995 45.000 8.43 0.00 0.00 3.56
178 179 2.225068 ATAGCGCGTCACTTTAGCAT 57.775 45.000 8.43 0.00 0.00 3.79
179 180 2.855660 TATAGCGCGTCACTTTAGCA 57.144 45.000 8.43 0.00 0.00 3.49
180 181 3.114065 AGTTATAGCGCGTCACTTTAGC 58.886 45.455 8.43 0.00 0.00 3.09
181 182 5.697848 AAAGTTATAGCGCGTCACTTTAG 57.302 39.130 21.01 0.00 36.21 1.85
182 183 7.760131 ATAAAAGTTATAGCGCGTCACTTTA 57.240 32.000 22.00 13.31 36.82 1.85
183 184 6.657836 ATAAAAGTTATAGCGCGTCACTTT 57.342 33.333 18.38 18.38 38.94 2.66
184 185 6.657836 AATAAAAGTTATAGCGCGTCACTT 57.342 33.333 8.43 6.62 0.00 3.16
185 186 6.420008 CCTAATAAAAGTTATAGCGCGTCACT 59.580 38.462 8.43 0.00 0.00 3.41
186 187 6.578691 CCTAATAAAAGTTATAGCGCGTCAC 58.421 40.000 8.43 0.00 0.00 3.67
187 188 5.176223 GCCTAATAAAAGTTATAGCGCGTCA 59.824 40.000 8.43 0.00 0.00 4.35
188 189 5.606266 GCCTAATAAAAGTTATAGCGCGTC 58.394 41.667 8.43 0.00 0.00 5.19
189 190 4.149396 CGCCTAATAAAAGTTATAGCGCGT 59.851 41.667 8.43 0.00 32.95 6.01
190 191 4.625135 CGCCTAATAAAAGTTATAGCGCG 58.375 43.478 0.00 0.00 32.95 6.86
191 192 4.392216 GCGCCTAATAAAAGTTATAGCGC 58.608 43.478 19.74 19.74 45.77 5.92
192 193 4.383649 TCGCGCCTAATAAAAGTTATAGCG 59.616 41.667 0.00 12.14 43.37 4.26
193 194 5.834239 TCGCGCCTAATAAAAGTTATAGC 57.166 39.130 0.00 0.00 0.00 2.97
197 198 9.440784 CAAAAATATCGCGCCTAATAAAAGTTA 57.559 29.630 0.00 0.00 0.00 2.24
198 199 7.971722 ACAAAAATATCGCGCCTAATAAAAGTT 59.028 29.630 0.00 0.00 0.00 2.66
199 200 7.431084 CACAAAAATATCGCGCCTAATAAAAGT 59.569 33.333 0.00 0.00 0.00 2.66
200 201 7.431084 ACACAAAAATATCGCGCCTAATAAAAG 59.569 33.333 0.00 0.00 0.00 2.27
201 202 7.219154 CACACAAAAATATCGCGCCTAATAAAA 59.781 33.333 0.00 0.00 0.00 1.52
202 203 6.689241 CACACAAAAATATCGCGCCTAATAAA 59.311 34.615 0.00 0.00 0.00 1.40
203 204 6.195868 CACACAAAAATATCGCGCCTAATAA 58.804 36.000 0.00 0.00 0.00 1.40
204 205 5.277586 CCACACAAAAATATCGCGCCTAATA 60.278 40.000 0.00 0.00 0.00 0.98
205 206 4.497340 CCACACAAAAATATCGCGCCTAAT 60.497 41.667 0.00 0.00 0.00 1.73
206 207 3.181505 CCACACAAAAATATCGCGCCTAA 60.182 43.478 0.00 0.00 0.00 2.69
207 208 2.353269 CCACACAAAAATATCGCGCCTA 59.647 45.455 0.00 0.00 0.00 3.93
208 209 1.132262 CCACACAAAAATATCGCGCCT 59.868 47.619 0.00 0.00 0.00 5.52
209 210 1.544686 CCACACAAAAATATCGCGCC 58.455 50.000 0.00 0.00 0.00 6.53
210 211 0.913876 GCCACACAAAAATATCGCGC 59.086 50.000 0.00 0.00 0.00 6.86
211 212 1.544686 GGCCACACAAAAATATCGCG 58.455 50.000 0.00 0.00 0.00 5.87
212 213 1.135517 ACGGCCACACAAAAATATCGC 60.136 47.619 2.24 0.00 0.00 4.58
213 214 2.911819 ACGGCCACACAAAAATATCG 57.088 45.000 2.24 0.00 0.00 2.92
214 215 3.057174 TCCAACGGCCACACAAAAATATC 60.057 43.478 2.24 0.00 0.00 1.63
215 216 2.894126 TCCAACGGCCACACAAAAATAT 59.106 40.909 2.24 0.00 0.00 1.28
216 217 2.294791 CTCCAACGGCCACACAAAAATA 59.705 45.455 2.24 0.00 0.00 1.40
217 218 1.068434 CTCCAACGGCCACACAAAAAT 59.932 47.619 2.24 0.00 0.00 1.82
218 219 0.457851 CTCCAACGGCCACACAAAAA 59.542 50.000 2.24 0.00 0.00 1.94
219 220 0.394488 TCTCCAACGGCCACACAAAA 60.394 50.000 2.24 0.00 0.00 2.44
220 221 0.179004 ATCTCCAACGGCCACACAAA 60.179 50.000 2.24 0.00 0.00 2.83
221 222 0.888736 CATCTCCAACGGCCACACAA 60.889 55.000 2.24 0.00 0.00 3.33
222 223 1.302431 CATCTCCAACGGCCACACA 60.302 57.895 2.24 0.00 0.00 3.72
223 224 2.690778 GCATCTCCAACGGCCACAC 61.691 63.158 2.24 0.00 0.00 3.82
224 225 2.359850 GCATCTCCAACGGCCACA 60.360 61.111 2.24 0.00 0.00 4.17
225 226 1.244019 AAAGCATCTCCAACGGCCAC 61.244 55.000 2.24 0.00 0.00 5.01
226 227 0.326595 TAAAGCATCTCCAACGGCCA 59.673 50.000 2.24 0.00 0.00 5.36
227 228 1.401905 CTTAAAGCATCTCCAACGGCC 59.598 52.381 0.00 0.00 0.00 6.13
228 229 2.084546 ACTTAAAGCATCTCCAACGGC 58.915 47.619 0.00 0.00 0.00 5.68
229 230 2.420022 CCACTTAAAGCATCTCCAACGG 59.580 50.000 0.00 0.00 0.00 4.44
230 231 3.074412 ACCACTTAAAGCATCTCCAACG 58.926 45.455 0.00 0.00 0.00 4.10
231 232 4.072131 TCACCACTTAAAGCATCTCCAAC 58.928 43.478 0.00 0.00 0.00 3.77
232 233 4.072131 GTCACCACTTAAAGCATCTCCAA 58.928 43.478 0.00 0.00 0.00 3.53
233 234 3.327757 AGTCACCACTTAAAGCATCTCCA 59.672 43.478 0.00 0.00 0.00 3.86
234 235 3.686726 CAGTCACCACTTAAAGCATCTCC 59.313 47.826 0.00 0.00 0.00 3.71
235 236 3.126000 GCAGTCACCACTTAAAGCATCTC 59.874 47.826 0.00 0.00 0.00 2.75
236 237 3.077359 GCAGTCACCACTTAAAGCATCT 58.923 45.455 0.00 0.00 0.00 2.90
237 238 3.077359 AGCAGTCACCACTTAAAGCATC 58.923 45.455 0.00 0.00 0.00 3.91
238 239 3.077359 GAGCAGTCACCACTTAAAGCAT 58.923 45.455 0.00 0.00 0.00 3.79
239 240 2.494059 GAGCAGTCACCACTTAAAGCA 58.506 47.619 0.00 0.00 0.00 3.91
240 241 1.461127 CGAGCAGTCACCACTTAAAGC 59.539 52.381 0.00 0.00 0.00 3.51
241 242 3.026630 TCGAGCAGTCACCACTTAAAG 57.973 47.619 0.00 0.00 0.00 1.85
242 243 3.128349 GTTCGAGCAGTCACCACTTAAA 58.872 45.455 0.00 0.00 0.00 1.52
243 244 2.750948 GTTCGAGCAGTCACCACTTAA 58.249 47.619 0.00 0.00 0.00 1.85
250 251 2.771210 GAAATCGTTCGAGCAGTCAC 57.229 50.000 0.00 0.00 0.00 3.67
270 271 1.153349 GGTGCCCGGTCATCTTCTC 60.153 63.158 0.00 0.00 0.00 2.87
299 300 2.335092 ATCTTGCTGCCCGGATCAGG 62.335 60.000 20.35 4.68 32.41 3.86
301 302 1.146930 GATCTTGCTGCCCGGATCA 59.853 57.895 0.73 0.00 35.85 2.92
414 415 1.139256 TCCCCGCAAAAAGGAAAAACC 59.861 47.619 0.00 0.00 39.35 3.27
422 423 4.513198 TGATAACTTTCCCCGCAAAAAG 57.487 40.909 0.00 0.00 38.24 2.27
559 576 0.113385 TCCCGGCAAAGGAAATTCCA 59.887 50.000 15.21 0.00 39.61 3.53
575 592 6.766467 AGATCGTACCAAATTTTACATCTCCC 59.234 38.462 0.00 0.00 0.00 4.30
811 843 1.603678 GCAGCATTTGTGTGGTTCCTG 60.604 52.381 0.00 0.00 0.00 3.86
942 1001 0.598419 GCTTTGCACTTGACTTGGCC 60.598 55.000 0.00 0.00 0.00 5.36
1555 1668 1.081641 CGTACGTGACTGGCTTCGT 60.082 57.895 7.22 8.93 39.74 3.85
1671 1790 0.596577 AACTACTCGACAAGCTCGCA 59.403 50.000 0.00 0.00 42.62 5.10
1672 1791 2.159544 AGTAACTACTCGACAAGCTCGC 60.160 50.000 0.00 0.00 42.62 5.03
1673 1792 3.743567 AGTAACTACTCGACAAGCTCG 57.256 47.619 0.00 0.00 44.44 5.03
1737 1895 9.424319 CGTGGATATTAGTAGTGCAAGATAAAT 57.576 33.333 0.00 0.00 0.00 1.40
1747 1906 3.729217 CACACGCGTGGATATTAGTAGTG 59.271 47.826 39.21 21.47 39.64 2.74
1886 2054 8.708742 GGGTACATCAAAGCAAAAGTTTTATTC 58.291 33.333 0.00 0.00 0.00 1.75
1892 2060 5.598417 AGAAGGGTACATCAAAGCAAAAGTT 59.402 36.000 0.00 0.00 0.00 2.66
1912 2080 2.971901 ACCAAACACCCCCTTAGAAG 57.028 50.000 0.00 0.00 0.00 2.85
1913 2081 2.514582 TGAACCAAACACCCCCTTAGAA 59.485 45.455 0.00 0.00 0.00 2.10
1914 2082 2.107552 CTGAACCAAACACCCCCTTAGA 59.892 50.000 0.00 0.00 0.00 2.10
1915 2083 2.107552 TCTGAACCAAACACCCCCTTAG 59.892 50.000 0.00 0.00 0.00 2.18
1916 2084 2.107552 CTCTGAACCAAACACCCCCTTA 59.892 50.000 0.00 0.00 0.00 2.69
1917 2085 0.930726 TCTGAACCAAACACCCCCTT 59.069 50.000 0.00 0.00 0.00 3.95
1918 2086 0.478507 CTCTGAACCAAACACCCCCT 59.521 55.000 0.00 0.00 0.00 4.79
1919 2087 0.476771 TCTCTGAACCAAACACCCCC 59.523 55.000 0.00 0.00 0.00 5.40
1920 2088 1.143073 AGTCTCTGAACCAAACACCCC 59.857 52.381 0.00 0.00 0.00 4.95
1921 2089 2.640316 AGTCTCTGAACCAAACACCC 57.360 50.000 0.00 0.00 0.00 4.61
1922 2090 4.983671 AAAAGTCTCTGAACCAAACACC 57.016 40.909 0.00 0.00 0.00 4.16
1923 2091 7.085052 ACTAAAAAGTCTCTGAACCAAACAC 57.915 36.000 0.00 0.00 0.00 3.32
1924 2092 6.317893 GGACTAAAAAGTCTCTGAACCAAACA 59.682 38.462 5.59 0.00 38.74 2.83
1925 2093 6.238676 GGGACTAAAAAGTCTCTGAACCAAAC 60.239 42.308 5.59 0.00 36.42 2.93
1926 2094 5.826208 GGGACTAAAAAGTCTCTGAACCAAA 59.174 40.000 5.59 0.00 36.42 3.28
1927 2095 5.104277 TGGGACTAAAAAGTCTCTGAACCAA 60.104 40.000 6.93 0.00 39.88 3.67
1928 2096 4.410883 TGGGACTAAAAAGTCTCTGAACCA 59.589 41.667 6.93 1.83 39.88 3.67
1929 2097 4.969484 TGGGACTAAAAAGTCTCTGAACC 58.031 43.478 6.93 0.00 39.88 3.62
1930 2098 5.855045 TCTGGGACTAAAAAGTCTCTGAAC 58.145 41.667 11.25 0.00 41.91 3.18
1931 2099 6.688073 ATCTGGGACTAAAAAGTCTCTGAA 57.312 37.500 15.92 4.00 45.69 3.02
1932 2100 6.954684 AGTATCTGGGACTAAAAAGTCTCTGA 59.045 38.462 14.76 14.76 46.28 3.27
1933 2101 7.176589 AGTATCTGGGACTAAAAAGTCTCTG 57.823 40.000 6.93 6.48 39.88 3.35
1934 2102 8.337739 TCTAGTATCTGGGACTAAAAAGTCTCT 58.662 37.037 6.93 0.00 39.88 3.10
1935 2103 8.522542 TCTAGTATCTGGGACTAAAAAGTCTC 57.477 38.462 5.59 2.12 39.63 3.36
1936 2104 8.896722 TTCTAGTATCTGGGACTAAAAAGTCT 57.103 34.615 5.59 0.00 38.74 3.24
1937 2105 9.939802 TTTTCTAGTATCTGGGACTAAAAAGTC 57.060 33.333 0.00 0.00 38.04 3.01
1962 2130 8.867097 GGTTTCTAGGGACTTTTTAAGGATTTT 58.133 33.333 0.00 0.00 41.75 1.82
1963 2131 8.008332 TGGTTTCTAGGGACTTTTTAAGGATTT 58.992 33.333 0.00 0.00 41.75 2.17
1964 2132 7.532199 TGGTTTCTAGGGACTTTTTAAGGATT 58.468 34.615 0.00 0.00 41.75 3.01
1965 2133 7.098845 TGGTTTCTAGGGACTTTTTAAGGAT 57.901 36.000 0.00 0.00 41.75 3.24
1966 2134 6.518516 TGGTTTCTAGGGACTTTTTAAGGA 57.481 37.500 0.00 0.00 41.75 3.36
1967 2135 7.068962 TGTTTGGTTTCTAGGGACTTTTTAAGG 59.931 37.037 0.00 0.00 41.75 2.69
1968 2136 8.002984 TGTTTGGTTTCTAGGGACTTTTTAAG 57.997 34.615 0.00 0.00 41.75 1.85
1969 2137 7.068962 CCTGTTTGGTTTCTAGGGACTTTTTAA 59.931 37.037 0.00 0.00 41.75 1.52
1970 2138 6.548251 CCTGTTTGGTTTCTAGGGACTTTTTA 59.452 38.462 0.00 0.00 41.75 1.52
1971 2139 5.362717 CCTGTTTGGTTTCTAGGGACTTTTT 59.637 40.000 0.00 0.00 41.75 1.94
1972 2140 4.893524 CCTGTTTGGTTTCTAGGGACTTTT 59.106 41.667 0.00 0.00 41.75 2.27
1973 2141 4.167307 TCCTGTTTGGTTTCTAGGGACTTT 59.833 41.667 0.00 0.00 37.15 2.66
1974 2142 3.720002 TCCTGTTTGGTTTCTAGGGACTT 59.280 43.478 0.00 0.00 37.15 3.01
1975 2143 3.323775 TCCTGTTTGGTTTCTAGGGACT 58.676 45.455 0.00 0.00 38.94 3.85
1976 2144 3.559384 CCTCCTGTTTGGTTTCTAGGGAC 60.559 52.174 0.00 0.00 37.07 4.46
1977 2145 2.642807 CCTCCTGTTTGGTTTCTAGGGA 59.357 50.000 0.00 0.00 37.07 4.20
1978 2146 2.642807 TCCTCCTGTTTGGTTTCTAGGG 59.357 50.000 0.00 0.00 37.07 3.53
1979 2147 4.072839 GTTCCTCCTGTTTGGTTTCTAGG 58.927 47.826 0.00 0.00 37.07 3.02
1980 2148 4.974399 AGTTCCTCCTGTTTGGTTTCTAG 58.026 43.478 0.00 0.00 37.07 2.43
1981 2149 5.382664 AAGTTCCTCCTGTTTGGTTTCTA 57.617 39.130 0.00 0.00 37.07 2.10
1982 2150 3.953542 AGTTCCTCCTGTTTGGTTTCT 57.046 42.857 0.00 0.00 37.07 2.52
1983 2151 5.339008 AAAAGTTCCTCCTGTTTGGTTTC 57.661 39.130 0.00 0.00 37.07 2.78
1984 2152 5.483937 AGAAAAAGTTCCTCCTGTTTGGTTT 59.516 36.000 0.00 0.00 33.92 3.27
1985 2153 5.023452 AGAAAAAGTTCCTCCTGTTTGGTT 58.977 37.500 0.00 0.00 33.92 3.67
1986 2154 4.610333 AGAAAAAGTTCCTCCTGTTTGGT 58.390 39.130 0.00 0.00 33.92 3.67
1987 2155 5.592688 TGTAGAAAAAGTTCCTCCTGTTTGG 59.407 40.000 0.00 0.00 33.92 3.28
1988 2156 6.238759 CCTGTAGAAAAAGTTCCTCCTGTTTG 60.239 42.308 0.00 0.00 33.92 2.93
1989 2157 5.828328 CCTGTAGAAAAAGTTCCTCCTGTTT 59.172 40.000 0.00 0.00 33.92 2.83
1990 2158 5.377478 CCTGTAGAAAAAGTTCCTCCTGTT 58.623 41.667 0.00 0.00 33.92 3.16
1991 2159 4.202472 CCCTGTAGAAAAAGTTCCTCCTGT 60.202 45.833 0.00 0.00 33.92 4.00
1992 2160 4.041691 TCCCTGTAGAAAAAGTTCCTCCTG 59.958 45.833 0.00 0.00 33.92 3.86
1993 2161 4.041815 GTCCCTGTAGAAAAAGTTCCTCCT 59.958 45.833 0.00 0.00 33.92 3.69
1994 2162 4.041815 AGTCCCTGTAGAAAAAGTTCCTCC 59.958 45.833 0.00 0.00 33.92 4.30
1995 2163 5.230323 AGTCCCTGTAGAAAAAGTTCCTC 57.770 43.478 0.00 0.00 33.92 3.71
1996 2164 6.082707 TCTAGTCCCTGTAGAAAAAGTTCCT 58.917 40.000 0.00 0.00 33.92 3.36
1997 2165 6.356186 TCTAGTCCCTGTAGAAAAAGTTCC 57.644 41.667 0.00 0.00 33.92 3.62
1998 2166 8.672823 TTTTCTAGTCCCTGTAGAAAAAGTTC 57.327 34.615 13.16 0.00 46.31 3.01
2004 2172 7.509659 AGAGTCTTTTTCTAGTCCCTGTAGAAA 59.490 37.037 1.96 1.96 42.24 2.52
2005 2173 7.011382 AGAGTCTTTTTCTAGTCCCTGTAGAA 58.989 38.462 0.00 0.00 35.21 2.10
2006 2174 6.553857 AGAGTCTTTTTCTAGTCCCTGTAGA 58.446 40.000 0.00 0.00 0.00 2.59
2007 2175 6.844097 AGAGTCTTTTTCTAGTCCCTGTAG 57.156 41.667 0.00 0.00 0.00 2.74
2008 2176 7.468496 AGTAGAGTCTTTTTCTAGTCCCTGTA 58.532 38.462 0.00 0.00 0.00 2.74
2009 2177 6.316513 AGTAGAGTCTTTTTCTAGTCCCTGT 58.683 40.000 0.00 0.00 0.00 4.00
2010 2178 6.844097 AGTAGAGTCTTTTTCTAGTCCCTG 57.156 41.667 0.00 0.00 0.00 4.45
2011 2179 7.931046 TCTAGTAGAGTCTTTTTCTAGTCCCT 58.069 38.462 0.00 0.00 33.84 4.20
2012 2180 8.048514 TCTCTAGTAGAGTCTTTTTCTAGTCCC 58.951 40.741 23.51 0.00 42.83 4.46
2013 2181 9.106070 CTCTCTAGTAGAGTCTTTTTCTAGTCC 57.894 40.741 23.51 0.00 45.85 3.85
2064 2232 9.930693 GATTCAGAAGTCCTAGAACTTTTTCTA 57.069 33.333 0.00 0.00 42.44 2.10
2065 2233 8.432805 TGATTCAGAAGTCCTAGAACTTTTTCT 58.567 33.333 0.00 0.00 44.70 2.52
2066 2234 8.608844 TGATTCAGAAGTCCTAGAACTTTTTC 57.391 34.615 0.00 0.00 39.55 2.29
2067 2235 8.980481 TTGATTCAGAAGTCCTAGAACTTTTT 57.020 30.769 0.00 0.00 39.55 1.94
2068 2236 8.841300 GTTTGATTCAGAAGTCCTAGAACTTTT 58.159 33.333 0.00 0.00 39.55 2.27
2069 2237 7.993183 TGTTTGATTCAGAAGTCCTAGAACTTT 59.007 33.333 0.00 0.00 39.55 2.66
2070 2238 7.442666 GTGTTTGATTCAGAAGTCCTAGAACTT 59.557 37.037 0.00 0.00 42.10 2.66
2071 2239 6.931840 GTGTTTGATTCAGAAGTCCTAGAACT 59.068 38.462 0.00 0.00 0.00 3.01
2072 2240 6.147985 GGTGTTTGATTCAGAAGTCCTAGAAC 59.852 42.308 0.00 0.00 0.00 3.01
2073 2241 6.231211 GGTGTTTGATTCAGAAGTCCTAGAA 58.769 40.000 0.00 0.00 0.00 2.10
2074 2242 5.280011 GGGTGTTTGATTCAGAAGTCCTAGA 60.280 44.000 0.00 0.00 0.00 2.43
2075 2243 4.938226 GGGTGTTTGATTCAGAAGTCCTAG 59.062 45.833 0.00 0.00 0.00 3.02
2076 2244 4.263331 GGGGTGTTTGATTCAGAAGTCCTA 60.263 45.833 0.00 0.00 0.00 2.94
2077 2245 3.498661 GGGGTGTTTGATTCAGAAGTCCT 60.499 47.826 0.00 0.00 0.00 3.85
2078 2246 2.820197 GGGGTGTTTGATTCAGAAGTCC 59.180 50.000 0.00 0.00 0.00 3.85
2079 2247 2.820197 GGGGGTGTTTGATTCAGAAGTC 59.180 50.000 0.00 0.00 0.00 3.01
2080 2248 2.447047 AGGGGGTGTTTGATTCAGAAGT 59.553 45.455 0.00 0.00 0.00 3.01
2081 2249 3.160679 AGGGGGTGTTTGATTCAGAAG 57.839 47.619 0.00 0.00 0.00 2.85
2082 2250 4.733077 TTAGGGGGTGTTTGATTCAGAA 57.267 40.909 0.00 0.00 0.00 3.02
2083 2251 4.141135 TGTTTAGGGGGTGTTTGATTCAGA 60.141 41.667 0.00 0.00 0.00 3.27
2084 2252 4.022329 GTGTTTAGGGGGTGTTTGATTCAG 60.022 45.833 0.00 0.00 0.00 3.02
2085 2253 3.892588 GTGTTTAGGGGGTGTTTGATTCA 59.107 43.478 0.00 0.00 0.00 2.57
2086 2254 3.892588 TGTGTTTAGGGGGTGTTTGATTC 59.107 43.478 0.00 0.00 0.00 2.52
2087 2255 3.917300 TGTGTTTAGGGGGTGTTTGATT 58.083 40.909 0.00 0.00 0.00 2.57
2088 2256 3.603965 TGTGTTTAGGGGGTGTTTGAT 57.396 42.857 0.00 0.00 0.00 2.57
2089 2257 3.603965 ATGTGTTTAGGGGGTGTTTGA 57.396 42.857 0.00 0.00 0.00 2.69
2090 2258 3.639094 TCAATGTGTTTAGGGGGTGTTTG 59.361 43.478 0.00 0.00 0.00 2.93
2091 2259 3.639561 GTCAATGTGTTTAGGGGGTGTTT 59.360 43.478 0.00 0.00 0.00 2.83
2092 2260 3.227614 GTCAATGTGTTTAGGGGGTGTT 58.772 45.455 0.00 0.00 0.00 3.32
2093 2261 2.812613 CGTCAATGTGTTTAGGGGGTGT 60.813 50.000 0.00 0.00 0.00 4.16
2094 2262 1.810151 CGTCAATGTGTTTAGGGGGTG 59.190 52.381 0.00 0.00 0.00 4.61
2095 2263 1.271707 CCGTCAATGTGTTTAGGGGGT 60.272 52.381 0.00 0.00 0.00 4.95
2099 2267 2.422597 TCAGCCGTCAATGTGTTTAGG 58.577 47.619 0.00 0.00 0.00 2.69
2130 2298 8.582437 CATTCTACCCTTTATTATGAGACGGTA 58.418 37.037 0.00 0.00 0.00 4.02
2131 2299 7.442656 CATTCTACCCTTTATTATGAGACGGT 58.557 38.462 0.00 0.00 0.00 4.83
2134 2302 8.429641 TGACCATTCTACCCTTTATTATGAGAC 58.570 37.037 0.00 0.00 0.00 3.36
2136 2304 9.799106 AATGACCATTCTACCCTTTATTATGAG 57.201 33.333 0.00 0.00 0.00 2.90
2147 2315 3.288092 GGGTGAAATGACCATTCTACCC 58.712 50.000 21.22 21.22 43.36 3.69
2153 2321 0.887933 GCACGGGTGAAATGACCATT 59.112 50.000 2.38 0.00 37.80 3.16
2181 2349 1.450134 TTCGATTCATGCGCAGGCT 60.450 52.632 18.83 6.95 40.82 4.58
2187 2355 1.267732 GCCTTGAGTTCGATTCATGCG 60.268 52.381 1.52 0.00 0.00 4.73
2206 2374 1.066071 GTCCACCTTAGACCAAGAGGC 60.066 57.143 0.00 0.00 39.06 4.70
2222 2390 3.911260 TCCTAATTGGTTAGTGTGGTCCA 59.089 43.478 0.00 0.00 36.40 4.02
2244 2412 0.391130 ACGCACACGCATTAGGATGT 60.391 50.000 0.00 0.00 45.53 3.06
2290 2463 3.793144 GCTTGCCCAGTCGCGAAG 61.793 66.667 12.06 6.61 0.00 3.79
2297 2470 1.152269 AACAATGGGCTTGCCCAGT 60.152 52.632 32.97 29.48 43.67 4.00
2304 2477 1.923356 ACCGATTCAACAATGGGCTT 58.077 45.000 0.00 0.00 40.70 4.35
2305 2478 1.818674 GAACCGATTCAACAATGGGCT 59.181 47.619 0.00 0.00 40.70 5.19
2307 2480 4.519540 AAAGAACCGATTCAACAATGGG 57.480 40.909 0.00 0.00 42.31 4.00
2308 2481 7.273381 GTGATAAAAGAACCGATTCAACAATGG 59.727 37.037 0.00 0.00 37.29 3.16
2353 2526 2.879002 TTTTCTTCCATTGCAACGCA 57.121 40.000 0.00 0.00 36.47 5.24
2373 2546 8.158132 TCTCGAGAGTATGTATGAGAGGTATTT 58.842 37.037 12.08 0.00 0.00 1.40
2374 2547 7.604927 GTCTCGAGAGTATGTATGAGAGGTATT 59.395 40.741 17.22 0.00 33.52 1.89
2375 2548 7.101054 GTCTCGAGAGTATGTATGAGAGGTAT 58.899 42.308 17.22 0.00 33.52 2.73
2378 2551 5.301555 TGTCTCGAGAGTATGTATGAGAGG 58.698 45.833 17.22 0.00 33.52 3.69
2405 2578 8.127327 CGTCATGCAAGATTTCAAGAGATTTAT 58.873 33.333 0.00 0.00 0.00 1.40
2409 2582 4.201891 GCGTCATGCAAGATTTCAAGAGAT 60.202 41.667 0.00 0.00 45.45 2.75
2432 2605 6.764308 AGGTATCATGTTGTTTTCATCTGG 57.236 37.500 0.00 0.00 0.00 3.86
2457 2991 7.064253 ACAAATGCGTAAAGAGATACCTACAAC 59.936 37.037 0.00 0.00 0.00 3.32
2469 3003 4.520078 GAACGACAACAAATGCGTAAAGA 58.480 39.130 0.00 0.00 39.63 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.