Multiple sequence alignment - TraesCS1A01G158600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G158600 chr1A 100.000 3731 0 0 1 3731 282551983 282555713 0.000000e+00 6890.0
1 TraesCS1A01G158600 chr1A 91.463 164 14 0 283 446 335045336 335045499 3.750000e-55 226.0
2 TraesCS1A01G158600 chr1A 93.548 62 3 1 2129 2189 488102413 488102352 1.430000e-14 91.6
3 TraesCS1A01G158600 chr1D 94.120 2143 89 17 3 2123 219483508 219485635 0.000000e+00 3225.0
4 TraesCS1A01G158600 chr1D 93.211 766 43 6 2830 3590 125833732 125834493 0.000000e+00 1118.0
5 TraesCS1A01G158600 chr1D 93.844 666 21 8 2186 2834 219485649 219486311 0.000000e+00 985.0
6 TraesCS1A01G158600 chr1D 73.085 457 111 8 3140 3589 294597 294146 6.450000e-33 152.0
7 TraesCS1A01G158600 chr1D 87.692 65 8 0 3510 3574 269322774 269322710 4.000000e-10 76.8
8 TraesCS1A01G158600 chr1B 92.531 1861 95 18 282 2123 314569896 314571731 0.000000e+00 2627.0
9 TraesCS1A01G158600 chr1B 92.208 616 16 14 2217 2831 314571759 314572343 0.000000e+00 843.0
10 TraesCS1A01G158600 chr1B 92.453 159 12 0 283 441 345338670 345338828 1.040000e-55 228.0
11 TraesCS1A01G158600 chr1B 94.737 57 2 1 2132 2187 195373650 195373706 1.850000e-13 87.9
12 TraesCS1A01G158600 chr1B 94.643 56 3 0 2132 2187 588496743 588496688 1.850000e-13 87.9
13 TraesCS1A01G158600 chr1B 74.519 208 47 4 3351 3556 572207078 572207281 6.640000e-13 86.1
14 TraesCS1A01G158600 chr7D 74.089 741 176 14 2859 3589 463288765 463288031 1.310000e-74 291.0
15 TraesCS1A01G158600 chr7D 94.558 147 7 1 3586 3731 84930545 84930691 3.750000e-55 226.0
16 TraesCS1A01G158600 chr7D 74.771 218 47 6 3342 3556 62680746 62680958 1.430000e-14 91.6
17 TraesCS1A01G158600 chr5D 73.884 739 176 15 2859 3586 350976439 350977171 2.840000e-71 279.0
18 TraesCS1A01G158600 chr5D 94.286 140 8 0 3590 3729 409369788 409369649 8.120000e-52 215.0
19 TraesCS1A01G158600 chr6B 94.444 144 8 0 3588 3731 133215754 133215611 4.850000e-54 222.0
20 TraesCS1A01G158600 chr6B 74.654 217 49 4 3342 3556 1908168 1908380 1.430000e-14 91.6
21 TraesCS1A01G158600 chr5B 94.366 142 8 0 3590 3731 701215391 701215250 6.270000e-53 219.0
22 TraesCS1A01G158600 chr4B 94.326 141 8 0 3591 3731 498334921 498334781 2.260000e-52 217.0
23 TraesCS1A01G158600 chr3B 93.750 144 9 0 3588 3731 454892851 454892708 2.260000e-52 217.0
24 TraesCS1A01G158600 chr3B 96.429 56 1 1 2133 2187 20487500 20487445 1.430000e-14 91.6
25 TraesCS1A01G158600 chr3A 92.715 151 10 1 3581 3731 454959426 454959277 2.260000e-52 217.0
26 TraesCS1A01G158600 chr2B 94.326 141 8 0 3591 3731 634967092 634966952 2.260000e-52 217.0
27 TraesCS1A01G158600 chr2B 74.017 458 105 10 3140 3589 91480705 91480254 1.380000e-39 174.0
28 TraesCS1A01G158600 chr2B 94.643 56 2 1 2133 2187 475485649 475485594 6.640000e-13 86.1
29 TraesCS1A01G158600 chrUn 93.662 142 9 0 3590 3731 373473001 373472860 2.920000e-51 213.0
30 TraesCS1A01G158600 chr2D 96.491 57 1 1 2132 2187 154954198 154954254 3.970000e-15 93.5
31 TraesCS1A01G158600 chr7A 94.828 58 2 1 2133 2189 701306103 701306046 5.130000e-14 89.8
32 TraesCS1A01G158600 chr3D 94.737 57 2 1 2132 2187 416187155 416187099 1.850000e-13 87.9
33 TraesCS1A01G158600 chr2A 92.188 64 2 3 2126 2187 699621135 699621197 1.850000e-13 87.9
34 TraesCS1A01G158600 chr4A 94.595 37 0 2 2099 2133 713794748 713794784 5.210000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G158600 chr1A 282551983 282555713 3730 False 6890 6890 100.0000 1 3731 1 chr1A.!!$F1 3730
1 TraesCS1A01G158600 chr1D 219483508 219486311 2803 False 2105 3225 93.9820 3 2834 2 chr1D.!!$F2 2831
2 TraesCS1A01G158600 chr1D 125833732 125834493 761 False 1118 1118 93.2110 2830 3590 1 chr1D.!!$F1 760
3 TraesCS1A01G158600 chr1B 314569896 314572343 2447 False 1735 2627 92.3695 282 2831 2 chr1B.!!$F4 2549
4 TraesCS1A01G158600 chr7D 463288031 463288765 734 True 291 291 74.0890 2859 3589 1 chr7D.!!$R1 730
5 TraesCS1A01G158600 chr5D 350976439 350977171 732 False 279 279 73.8840 2859 3586 1 chr5D.!!$F1 727

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
179 180 0.380378 TGACTTTTTGCACACGCCTC 59.620 50.0 0.0 0.0 37.32 4.70 F
1587 1601 0.398318 GAGAAGTTCCAGCCCTGTGT 59.602 55.0 0.0 0.0 0.00 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2127 2160 0.098376 CGAACGAAGGGAGTACGAGG 59.902 60.0 0.00 0.00 0.00 4.63 R
3244 3293 0.413434 TGGAGTCCATCTGGTCCTGA 59.587 55.0 8.12 0.28 32.97 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 6.945435 TCAATCCTATTTGTGGTTTTGCTAGA 59.055 34.615 0.00 0.00 0.00 2.43
83 84 7.455058 TCCTATTTGTGGTTTTGCTAGACTTA 58.545 34.615 0.00 0.00 0.00 2.24
94 95 6.985188 TTTGCTAGACTTATGTTGATGGTC 57.015 37.500 0.00 0.00 0.00 4.02
116 117 8.494433 TGGTCTAATCTGTTAATTTAGCATCCT 58.506 33.333 0.00 0.00 0.00 3.24
130 131 6.994421 TTAGCATCCTATGGTCACTCAATA 57.006 37.500 0.00 0.00 41.83 1.90
131 132 5.894298 AGCATCCTATGGTCACTCAATAA 57.106 39.130 0.00 0.00 35.90 1.40
133 134 6.471146 AGCATCCTATGGTCACTCAATAATC 58.529 40.000 0.00 0.00 35.90 1.75
135 136 6.939163 GCATCCTATGGTCACTCAATAATCTT 59.061 38.462 0.00 0.00 0.00 2.40
136 137 8.097038 GCATCCTATGGTCACTCAATAATCTTA 58.903 37.037 0.00 0.00 0.00 2.10
179 180 0.380378 TGACTTTTTGCACACGCCTC 59.620 50.000 0.00 0.00 37.32 4.70
238 239 3.053619 TGCTGAGGATAGACTGTGGACTA 60.054 47.826 0.00 0.00 0.00 2.59
239 240 3.954904 GCTGAGGATAGACTGTGGACTAA 59.045 47.826 0.00 0.00 0.00 2.24
243 244 6.698380 TGAGGATAGACTGTGGACTAAAAAC 58.302 40.000 0.00 0.00 0.00 2.43
251 252 4.929808 ACTGTGGACTAAAAACGCAGATAG 59.070 41.667 10.93 0.00 43.44 2.08
258 259 6.483640 GGACTAAAAACGCAGATAGAATGGAT 59.516 38.462 0.00 0.00 0.00 3.41
269 270 5.013495 CAGATAGAATGGATTTGCCCCTCTA 59.987 44.000 0.00 0.00 34.88 2.43
275 276 4.706842 TGGATTTGCCCCTCTAATACTC 57.293 45.455 0.00 0.00 34.97 2.59
337 338 1.039856 ATGGTTTTTGCTCCTGCGTT 58.960 45.000 0.00 0.00 43.34 4.84
373 374 3.006859 CGCCATCTATCTTGGGTCACATA 59.993 47.826 0.00 0.00 34.66 2.29
475 477 0.464554 GTAGCCCCTGCAGTGGAATC 60.465 60.000 20.52 0.93 41.13 2.52
517 519 4.259109 CGTCGAATACGTCTGTACTGTAC 58.741 47.826 10.98 10.98 46.72 2.90
559 561 2.938823 CTACGCACGCACGCTTTGT 61.939 57.895 0.00 0.00 36.19 2.83
718 721 1.327460 CGACACATGTTAATCGCCCAG 59.673 52.381 10.10 0.00 0.00 4.45
786 791 3.242011 ACATTTCAACCCTGGCAGAAAT 58.758 40.909 17.94 10.77 40.29 2.17
804 809 1.997669 ATCTGAAAAGTCCTCGCGTC 58.002 50.000 5.77 0.00 0.00 5.19
852 857 2.025887 AGGGCAACTTGGTAGAAGGATG 60.026 50.000 0.00 0.00 0.00 3.51
858 863 4.640771 ACTTGGTAGAAGGATGCAGAAA 57.359 40.909 0.00 0.00 0.00 2.52
1060 1069 1.614824 CTCTGGCTCCTTGTCCCCT 60.615 63.158 0.00 0.00 0.00 4.79
1097 1106 2.195567 TCCAGCACCAGCAAGCAAC 61.196 57.895 0.00 0.00 45.49 4.17
1132 1141 7.255625 GGTTCAAGTTTGATCCTCTAGCTTTTT 60.256 37.037 12.58 0.00 41.62 1.94
1151 1165 2.785105 CGGTTGCGTCCGTCGATTC 61.785 63.158 10.57 0.00 44.77 2.52
1154 1168 1.798725 TTGCGTCCGTCGATTCGTC 60.799 57.895 5.89 0.00 42.86 4.20
1295 1309 0.611714 GAGGTTCTTGCCGGTAAGGA 59.388 55.000 28.91 20.58 45.00 3.36
1423 1437 2.506472 GAACCGATCCTGCCTCCC 59.494 66.667 0.00 0.00 0.00 4.30
1435 1449 2.663196 CCTCCCCCGTCACAAGTC 59.337 66.667 0.00 0.00 0.00 3.01
1587 1601 0.398318 GAGAAGTTCCAGCCCTGTGT 59.602 55.000 0.00 0.00 0.00 3.72
1609 1623 2.990479 GCCAAGGAGGTGGACGAT 59.010 61.111 0.00 0.00 41.65 3.73
1789 1803 2.432628 CTGTGCTCGTTCGGGGTC 60.433 66.667 0.00 0.00 0.00 4.46
1858 1872 2.908940 AAGCAGCACCAGCACCAC 60.909 61.111 0.00 0.00 45.49 4.16
1914 1928 2.972625 TGATAAGGTTTGCTGACTCGG 58.027 47.619 0.00 0.00 0.00 4.63
1997 2016 7.088589 ACCAATTACAGTATCAATCAACTGC 57.911 36.000 2.52 0.00 45.65 4.40
2031 2051 5.484173 AACACACTACAAACACTCACATG 57.516 39.130 0.00 0.00 0.00 3.21
2041 2067 0.453782 CACTCACATGCATGCACACG 60.454 55.000 25.37 16.92 0.00 4.49
2057 2083 3.254654 CGCACTCACCCGCATACG 61.255 66.667 0.00 0.00 39.67 3.06
2059 2085 2.184322 CACTCACCCGCATACGCT 59.816 61.111 0.00 0.00 38.22 5.07
2060 2086 1.878522 CACTCACCCGCATACGCTC 60.879 63.158 0.00 0.00 38.22 5.03
2061 2087 2.348104 ACTCACCCGCATACGCTCA 61.348 57.895 0.00 0.00 38.22 4.26
2063 2089 2.890474 CACCCGCATACGCTCACC 60.890 66.667 0.00 0.00 38.22 4.02
2072 2100 1.546476 CATACGCTCACCCCCTATCTC 59.454 57.143 0.00 0.00 0.00 2.75
2074 2102 0.851469 ACGCTCACCCCCTATCTCTA 59.149 55.000 0.00 0.00 0.00 2.43
2075 2103 1.429687 ACGCTCACCCCCTATCTCTAT 59.570 52.381 0.00 0.00 0.00 1.98
2076 2104 2.158295 ACGCTCACCCCCTATCTCTATT 60.158 50.000 0.00 0.00 0.00 1.73
2077 2105 2.232452 CGCTCACCCCCTATCTCTATTG 59.768 54.545 0.00 0.00 0.00 1.90
2078 2106 3.243724 GCTCACCCCCTATCTCTATTGT 58.756 50.000 0.00 0.00 0.00 2.71
2079 2107 3.259625 GCTCACCCCCTATCTCTATTGTC 59.740 52.174 0.00 0.00 0.00 3.18
2080 2108 4.483950 CTCACCCCCTATCTCTATTGTCA 58.516 47.826 0.00 0.00 0.00 3.58
2082 2110 5.087323 TCACCCCCTATCTCTATTGTCATC 58.913 45.833 0.00 0.00 0.00 2.92
2083 2111 5.090139 CACCCCCTATCTCTATTGTCATCT 58.910 45.833 0.00 0.00 0.00 2.90
2084 2112 5.545723 CACCCCCTATCTCTATTGTCATCTT 59.454 44.000 0.00 0.00 0.00 2.40
2085 2113 5.545723 ACCCCCTATCTCTATTGTCATCTTG 59.454 44.000 0.00 0.00 0.00 3.02
2086 2114 5.545723 CCCCCTATCTCTATTGTCATCTTGT 59.454 44.000 0.00 0.00 0.00 3.16
2087 2115 6.295575 CCCCCTATCTCTATTGTCATCTTGTC 60.296 46.154 0.00 0.00 0.00 3.18
2127 2160 4.719369 ACGAAGTCGCCACGGAGC 62.719 66.667 0.00 0.00 44.43 4.70
2130 2163 3.991536 GAAGTCGCCACGGAGCCTC 62.992 68.421 0.00 0.00 0.00 4.70
2134 2167 4.849329 CGCCACGGAGCCTCGTAC 62.849 72.222 1.60 0.00 41.86 3.67
2135 2168 3.450115 GCCACGGAGCCTCGTACT 61.450 66.667 1.60 0.00 41.86 2.73
2136 2169 2.799371 CCACGGAGCCTCGTACTC 59.201 66.667 1.60 0.00 41.86 2.59
2140 2173 4.358810 GGAGCCTCGTACTCCCTT 57.641 61.111 9.17 0.00 46.81 3.95
2141 2174 2.117257 GGAGCCTCGTACTCCCTTC 58.883 63.158 9.17 0.00 46.81 3.46
2142 2175 1.726533 GGAGCCTCGTACTCCCTTCG 61.727 65.000 9.17 0.00 46.81 3.79
2143 2176 1.001145 AGCCTCGTACTCCCTTCGT 60.001 57.895 0.00 0.00 0.00 3.85
2144 2177 0.611340 AGCCTCGTACTCCCTTCGTT 60.611 55.000 0.00 0.00 0.00 3.85
2145 2178 0.179142 GCCTCGTACTCCCTTCGTTC 60.179 60.000 0.00 0.00 0.00 3.95
2146 2179 0.098376 CCTCGTACTCCCTTCGTTCG 59.902 60.000 0.00 0.00 0.00 3.95
2147 2180 0.098376 CTCGTACTCCCTTCGTTCGG 59.902 60.000 0.00 0.00 0.00 4.30
2148 2181 0.321564 TCGTACTCCCTTCGTTCGGA 60.322 55.000 0.00 0.00 0.00 4.55
2149 2182 0.523072 CGTACTCCCTTCGTTCGGAA 59.477 55.000 0.00 0.00 0.00 4.30
2150 2183 1.133790 CGTACTCCCTTCGTTCGGAAT 59.866 52.381 0.00 0.00 33.26 3.01
2151 2184 2.416431 CGTACTCCCTTCGTTCGGAATT 60.416 50.000 0.00 0.00 33.26 2.17
2152 2185 3.181497 CGTACTCCCTTCGTTCGGAATTA 60.181 47.826 0.00 0.00 33.26 1.40
2153 2186 3.242549 ACTCCCTTCGTTCGGAATTAC 57.757 47.619 0.00 0.00 33.26 1.89
2154 2187 2.830321 ACTCCCTTCGTTCGGAATTACT 59.170 45.455 0.00 0.00 33.26 2.24
2155 2188 3.260128 ACTCCCTTCGTTCGGAATTACTT 59.740 43.478 0.00 0.00 33.26 2.24
2156 2189 3.592059 TCCCTTCGTTCGGAATTACTTG 58.408 45.455 0.00 0.00 33.26 3.16
2157 2190 3.007182 TCCCTTCGTTCGGAATTACTTGT 59.993 43.478 0.00 0.00 33.26 3.16
2158 2191 3.370061 CCCTTCGTTCGGAATTACTTGTC 59.630 47.826 0.00 0.00 33.26 3.18
2159 2192 3.060363 CCTTCGTTCGGAATTACTTGTCG 59.940 47.826 0.00 0.00 33.26 4.35
2160 2193 1.987770 TCGTTCGGAATTACTTGTCGC 59.012 47.619 0.00 0.00 0.00 5.19
2161 2194 1.722464 CGTTCGGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
2162 2195 2.222508 CGTTCGGAATTACTTGTCGCAG 60.223 50.000 0.00 0.00 0.00 5.18
2163 2196 2.991190 GTTCGGAATTACTTGTCGCAGA 59.009 45.455 0.00 0.00 0.00 4.26
2164 2197 3.306917 TCGGAATTACTTGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
2165 2198 3.655486 TCGGAATTACTTGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
2166 2199 4.250464 TCGGAATTACTTGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
2167 2200 5.412640 TCGGAATTACTTGTCGCAGAAATA 58.587 37.500 0.00 0.00 39.69 1.40
2168 2201 5.518847 TCGGAATTACTTGTCGCAGAAATAG 59.481 40.000 0.00 0.00 39.69 1.73
2169 2202 5.518847 CGGAATTACTTGTCGCAGAAATAGA 59.481 40.000 0.00 0.00 39.69 1.98
2170 2203 6.201044 CGGAATTACTTGTCGCAGAAATAGAT 59.799 38.462 0.00 0.00 39.69 1.98
2171 2204 7.348201 GGAATTACTTGTCGCAGAAATAGATG 58.652 38.462 0.00 0.00 39.69 2.90
2172 2205 7.011482 GGAATTACTTGTCGCAGAAATAGATGT 59.989 37.037 0.00 0.00 39.69 3.06
2173 2206 8.942338 AATTACTTGTCGCAGAAATAGATGTA 57.058 30.769 0.00 0.00 39.69 2.29
2174 2207 9.547753 AATTACTTGTCGCAGAAATAGATGTAT 57.452 29.630 0.00 0.00 39.69 2.29
2175 2208 8.575565 TTACTTGTCGCAGAAATAGATGTATC 57.424 34.615 0.00 0.00 39.69 2.24
2176 2209 6.810911 ACTTGTCGCAGAAATAGATGTATCT 58.189 36.000 0.00 0.00 39.69 1.98
2177 2210 7.941919 ACTTGTCGCAGAAATAGATGTATCTA 58.058 34.615 4.22 4.22 40.45 1.98
2178 2211 8.079203 ACTTGTCGCAGAAATAGATGTATCTAG 58.921 37.037 7.57 0.00 39.84 2.43
2179 2212 7.745620 TGTCGCAGAAATAGATGTATCTAGA 57.254 36.000 7.57 0.00 39.84 2.43
2180 2213 7.585867 TGTCGCAGAAATAGATGTATCTAGAC 58.414 38.462 0.00 7.60 39.84 2.59
2181 2214 7.445707 TGTCGCAGAAATAGATGTATCTAGACT 59.554 37.037 0.00 4.40 39.84 3.24
2182 2215 8.937884 GTCGCAGAAATAGATGTATCTAGACTA 58.062 37.037 0.00 0.00 39.84 2.59
2183 2216 9.503399 TCGCAGAAATAGATGTATCTAGACTAA 57.497 33.333 0.00 0.00 42.20 2.24
2209 2242 2.161855 CAGGTGCACAGCCTAATTTGA 58.838 47.619 20.43 0.00 34.45 2.69
2212 2245 1.885887 GTGCACAGCCTAATTTGACCA 59.114 47.619 13.17 0.00 0.00 4.02
2223 2256 3.708563 AATTTGACCAGTTCCAACACG 57.291 42.857 0.00 0.00 0.00 4.49
2225 2258 0.542333 TTGACCAGTTCCAACACGGA 59.458 50.000 5.24 0.00 44.40 4.69
2250 2283 1.651737 TCTTCCCGGATTTGACCTGA 58.348 50.000 0.73 0.00 0.00 3.86
2308 2341 6.814954 ACTGAATCTTGAAATAGCCTAGGA 57.185 37.500 14.75 0.00 0.00 2.94
2356 2389 8.689972 CATTATTATTTGTCCAAGAGAAGCCTT 58.310 33.333 0.00 0.00 0.00 4.35
2385 2420 8.453320 TGAAGTAGATATGCTTGTTGATTTGTG 58.547 33.333 0.00 0.00 0.00 3.33
2645 2683 6.904463 TGTTAGTAGTTGTCATGTACTCCA 57.096 37.500 0.00 0.00 0.00 3.86
2670 2708 4.321008 CGTATAACATAGATCACGCCACCT 60.321 45.833 0.00 0.00 0.00 4.00
2678 2726 0.031994 ATCACGCCACCTGCAAAAAC 59.968 50.000 0.00 0.00 41.33 2.43
2905 2953 2.038557 TGAGTACCTTTTGGAGCTGGAC 59.961 50.000 0.00 0.00 44.07 4.02
3091 3140 6.016777 CCCACATATCCAGAGTTATTTTGAGC 60.017 42.308 0.00 0.00 0.00 4.26
3127 3176 0.179040 GGTGAACCAAACTGACCCGA 60.179 55.000 0.00 0.00 35.64 5.14
3156 3205 5.004922 TGGCAAAAGTTGAAACTAAGGTG 57.995 39.130 0.00 0.00 38.57 4.00
3158 3207 5.362430 TGGCAAAAGTTGAAACTAAGGTGAT 59.638 36.000 0.00 0.00 38.57 3.06
3196 3245 1.077716 CTCCTGGCCCCTTTTACCG 60.078 63.158 0.00 0.00 0.00 4.02
3208 3257 4.380444 CCCCTTTTACCGTTGATGATGTTG 60.380 45.833 0.00 0.00 0.00 3.33
3215 3264 4.394729 ACCGTTGATGATGTTGGTAAAGT 58.605 39.130 0.00 0.00 0.00 2.66
3218 3267 4.616802 CGTTGATGATGTTGGTAAAGTTGC 59.383 41.667 0.00 0.00 0.00 4.17
3230 3279 8.904834 TGTTGGTAAAGTTGCTTTTAGTATTGA 58.095 29.630 0.00 0.00 35.21 2.57
3244 3293 4.870021 AGTATTGAGGATTTGAAGGCCT 57.130 40.909 0.00 0.00 33.97 5.19
3332 3385 8.637986 ACACAAGAGGTTTTGATTGCTATAAAA 58.362 29.630 0.00 0.00 0.00 1.52
3339 3392 9.136323 AGGTTTTGATTGCTATAAAATCTAGGG 57.864 33.333 8.52 0.00 34.10 3.53
3413 3466 6.878317 TGATAATCCAGAAGTGGTAACTCAG 58.122 40.000 0.00 0.00 45.28 3.35
3427 3480 5.781306 TGGTAACTCAGTACAGACCCATAAA 59.219 40.000 0.00 0.00 37.61 1.40
3565 3619 4.122046 TCACTGACAATATCCTCATTGCG 58.878 43.478 0.00 0.00 39.13 4.85
3567 3621 3.873361 ACTGACAATATCCTCATTGCGTG 59.127 43.478 0.00 0.00 39.13 5.34
3590 3644 5.163864 TGTGAGTGCGTGCATAAGATTAAAG 60.164 40.000 0.00 0.00 0.00 1.85
3591 3645 4.332543 TGAGTGCGTGCATAAGATTAAAGG 59.667 41.667 0.00 0.00 0.00 3.11
3592 3646 3.627577 AGTGCGTGCATAAGATTAAAGGG 59.372 43.478 0.00 0.00 0.00 3.95
3593 3647 2.357637 TGCGTGCATAAGATTAAAGGGC 59.642 45.455 0.00 0.00 0.00 5.19
3594 3648 2.287608 GCGTGCATAAGATTAAAGGGCC 60.288 50.000 0.00 0.00 0.00 5.80
3595 3649 2.948979 CGTGCATAAGATTAAAGGGCCA 59.051 45.455 6.18 0.00 0.00 5.36
3596 3650 3.569701 CGTGCATAAGATTAAAGGGCCAT 59.430 43.478 6.18 0.00 0.00 4.40
3597 3651 4.037923 CGTGCATAAGATTAAAGGGCCATT 59.962 41.667 6.18 0.00 0.00 3.16
3598 3652 5.451798 CGTGCATAAGATTAAAGGGCCATTT 60.452 40.000 20.60 20.60 0.00 2.32
3599 3653 5.754890 GTGCATAAGATTAAAGGGCCATTTG 59.245 40.000 25.06 7.71 0.00 2.32
3600 3654 4.751600 GCATAAGATTAAAGGGCCATTTGC 59.248 41.667 25.06 14.03 40.16 3.68
3601 3655 5.684552 GCATAAGATTAAAGGGCCATTTGCA 60.685 40.000 25.06 12.00 43.89 4.08
3602 3656 6.527423 CATAAGATTAAAGGGCCATTTGCAT 58.473 36.000 25.06 16.15 43.89 3.96
3603 3657 5.440207 AAGATTAAAGGGCCATTTGCATT 57.560 34.783 25.06 11.34 43.89 3.56
3604 3658 5.440207 AGATTAAAGGGCCATTTGCATTT 57.560 34.783 25.06 9.46 43.89 2.32
3605 3659 5.818887 AGATTAAAGGGCCATTTGCATTTT 58.181 33.333 25.06 7.18 43.89 1.82
3606 3660 5.882000 AGATTAAAGGGCCATTTGCATTTTC 59.118 36.000 25.06 11.72 43.89 2.29
3607 3661 2.097680 AAGGGCCATTTGCATTTTCG 57.902 45.000 6.18 0.00 43.89 3.46
3608 3662 0.975887 AGGGCCATTTGCATTTTCGT 59.024 45.000 6.18 0.00 43.89 3.85
3609 3663 1.066929 AGGGCCATTTGCATTTTCGTC 60.067 47.619 6.18 0.00 43.89 4.20
3610 3664 1.358877 GGCCATTTGCATTTTCGTCC 58.641 50.000 0.00 0.00 43.89 4.79
3611 3665 1.358877 GCCATTTGCATTTTCGTCCC 58.641 50.000 0.00 0.00 40.77 4.46
3612 3666 1.066929 GCCATTTGCATTTTCGTCCCT 60.067 47.619 0.00 0.00 40.77 4.20
3613 3667 2.165437 GCCATTTGCATTTTCGTCCCTA 59.835 45.455 0.00 0.00 40.77 3.53
3614 3668 3.367910 GCCATTTGCATTTTCGTCCCTAA 60.368 43.478 0.00 0.00 40.77 2.69
3615 3669 4.173256 CCATTTGCATTTTCGTCCCTAAC 58.827 43.478 0.00 0.00 0.00 2.34
3616 3670 4.082245 CCATTTGCATTTTCGTCCCTAACT 60.082 41.667 0.00 0.00 0.00 2.24
3617 3671 5.469479 CATTTGCATTTTCGTCCCTAACTT 58.531 37.500 0.00 0.00 0.00 2.66
3618 3672 4.497473 TTGCATTTTCGTCCCTAACTTG 57.503 40.909 0.00 0.00 0.00 3.16
3619 3673 3.745799 TGCATTTTCGTCCCTAACTTGA 58.254 40.909 0.00 0.00 0.00 3.02
3620 3674 4.138290 TGCATTTTCGTCCCTAACTTGAA 58.862 39.130 0.00 0.00 0.00 2.69
3621 3675 4.580995 TGCATTTTCGTCCCTAACTTGAAA 59.419 37.500 0.00 0.00 0.00 2.69
3622 3676 4.915667 GCATTTTCGTCCCTAACTTGAAAC 59.084 41.667 0.00 0.00 0.00 2.78
3623 3677 5.506649 GCATTTTCGTCCCTAACTTGAAACA 60.507 40.000 0.00 0.00 0.00 2.83
3624 3678 5.488645 TTTTCGTCCCTAACTTGAAACAC 57.511 39.130 0.00 0.00 0.00 3.32
3625 3679 3.116079 TCGTCCCTAACTTGAAACACC 57.884 47.619 0.00 0.00 0.00 4.16
3626 3680 2.701951 TCGTCCCTAACTTGAAACACCT 59.298 45.455 0.00 0.00 0.00 4.00
3627 3681 3.896888 TCGTCCCTAACTTGAAACACCTA 59.103 43.478 0.00 0.00 0.00 3.08
3628 3682 4.344679 TCGTCCCTAACTTGAAACACCTAA 59.655 41.667 0.00 0.00 0.00 2.69
3629 3683 5.012354 TCGTCCCTAACTTGAAACACCTAAT 59.988 40.000 0.00 0.00 0.00 1.73
3630 3684 5.350640 CGTCCCTAACTTGAAACACCTAATC 59.649 44.000 0.00 0.00 0.00 1.75
3631 3685 6.235664 GTCCCTAACTTGAAACACCTAATCA 58.764 40.000 0.00 0.00 0.00 2.57
3632 3686 6.371825 GTCCCTAACTTGAAACACCTAATCAG 59.628 42.308 0.00 0.00 0.00 2.90
3633 3687 6.271391 TCCCTAACTTGAAACACCTAATCAGA 59.729 38.462 0.00 0.00 0.00 3.27
3634 3688 7.037586 TCCCTAACTTGAAACACCTAATCAGAT 60.038 37.037 0.00 0.00 0.00 2.90
3635 3689 8.265055 CCCTAACTTGAAACACCTAATCAGATA 58.735 37.037 0.00 0.00 0.00 1.98
3636 3690 9.838339 CCTAACTTGAAACACCTAATCAGATAT 57.162 33.333 0.00 0.00 0.00 1.63
3641 3695 9.442047 CTTGAAACACCTAATCAGATATATCCC 57.558 37.037 9.18 0.00 0.00 3.85
3642 3696 8.742125 TGAAACACCTAATCAGATATATCCCT 57.258 34.615 9.18 0.00 0.00 4.20
3643 3697 9.837681 TGAAACACCTAATCAGATATATCCCTA 57.162 33.333 9.18 0.00 0.00 3.53
3648 3702 9.973450 CACCTAATCAGATATATCCCTAATTCG 57.027 37.037 9.18 1.73 0.00 3.34
3649 3703 9.937876 ACCTAATCAGATATATCCCTAATTCGA 57.062 33.333 9.18 0.00 0.00 3.71
3653 3707 9.606631 AATCAGATATATCCCTAATTCGAAAGC 57.393 33.333 9.18 0.00 0.00 3.51
3654 3708 7.556844 TCAGATATATCCCTAATTCGAAAGCC 58.443 38.462 9.18 0.00 0.00 4.35
3655 3709 7.400339 TCAGATATATCCCTAATTCGAAAGCCT 59.600 37.037 9.18 0.00 0.00 4.58
3656 3710 7.493971 CAGATATATCCCTAATTCGAAAGCCTG 59.506 40.741 9.18 0.00 0.00 4.85
3657 3711 2.038387 TCCCTAATTCGAAAGCCTGC 57.962 50.000 0.00 0.00 0.00 4.85
3658 3712 1.559682 TCCCTAATTCGAAAGCCTGCT 59.440 47.619 0.00 0.00 0.00 4.24
3659 3713 1.943340 CCCTAATTCGAAAGCCTGCTC 59.057 52.381 0.00 0.00 0.00 4.26
3660 3714 2.632377 CCTAATTCGAAAGCCTGCTCA 58.368 47.619 0.00 0.00 0.00 4.26
3661 3715 3.009723 CCTAATTCGAAAGCCTGCTCAA 58.990 45.455 0.00 0.00 0.00 3.02
3662 3716 3.440173 CCTAATTCGAAAGCCTGCTCAAA 59.560 43.478 0.00 0.00 0.00 2.69
3663 3717 4.082787 CCTAATTCGAAAGCCTGCTCAAAA 60.083 41.667 0.00 0.00 0.00 2.44
3664 3718 4.320608 AATTCGAAAGCCTGCTCAAAAA 57.679 36.364 0.00 0.00 0.00 1.94
3665 3719 4.525912 ATTCGAAAGCCTGCTCAAAAAT 57.474 36.364 0.00 0.00 0.00 1.82
3666 3720 4.320608 TTCGAAAGCCTGCTCAAAAATT 57.679 36.364 0.00 0.00 0.00 1.82
3667 3721 3.900941 TCGAAAGCCTGCTCAAAAATTC 58.099 40.909 0.00 0.00 0.00 2.17
3668 3722 2.989166 CGAAAGCCTGCTCAAAAATTCC 59.011 45.455 0.00 0.00 0.00 3.01
3669 3723 3.329386 GAAAGCCTGCTCAAAAATTCCC 58.671 45.455 0.00 0.00 0.00 3.97
3670 3724 1.269958 AGCCTGCTCAAAAATTCCCC 58.730 50.000 0.00 0.00 0.00 4.81
3671 3725 1.203225 AGCCTGCTCAAAAATTCCCCT 60.203 47.619 0.00 0.00 0.00 4.79
3672 3726 1.205655 GCCTGCTCAAAAATTCCCCTC 59.794 52.381 0.00 0.00 0.00 4.30
3673 3727 1.827344 CCTGCTCAAAAATTCCCCTCC 59.173 52.381 0.00 0.00 0.00 4.30
3674 3728 1.474077 CTGCTCAAAAATTCCCCTCCG 59.526 52.381 0.00 0.00 0.00 4.63
3675 3729 0.173481 GCTCAAAAATTCCCCTCCGC 59.827 55.000 0.00 0.00 0.00 5.54
3676 3730 0.817654 CTCAAAAATTCCCCTCCGCC 59.182 55.000 0.00 0.00 0.00 6.13
3677 3731 0.963355 TCAAAAATTCCCCTCCGCCG 60.963 55.000 0.00 0.00 0.00 6.46
3678 3732 1.076014 AAAAATTCCCCTCCGCCGT 59.924 52.632 0.00 0.00 0.00 5.68
3679 3733 0.963856 AAAAATTCCCCTCCGCCGTC 60.964 55.000 0.00 0.00 0.00 4.79
3680 3734 2.132089 AAAATTCCCCTCCGCCGTCA 62.132 55.000 0.00 0.00 0.00 4.35
3681 3735 1.921869 AAATTCCCCTCCGCCGTCAT 61.922 55.000 0.00 0.00 0.00 3.06
3682 3736 2.608970 AATTCCCCTCCGCCGTCATG 62.609 60.000 0.00 0.00 0.00 3.07
3684 3738 4.838152 CCCCTCCGCCGTCATGTG 62.838 72.222 0.00 0.00 0.00 3.21
3690 3744 2.125310 CGCCGTCATGTGCCCTTA 60.125 61.111 0.00 0.00 0.00 2.69
3691 3745 1.523711 CGCCGTCATGTGCCCTTAT 60.524 57.895 0.00 0.00 0.00 1.73
3692 3746 0.249699 CGCCGTCATGTGCCCTTATA 60.250 55.000 0.00 0.00 0.00 0.98
3693 3747 1.512926 GCCGTCATGTGCCCTTATAG 58.487 55.000 0.00 0.00 0.00 1.31
3694 3748 1.070134 GCCGTCATGTGCCCTTATAGA 59.930 52.381 0.00 0.00 0.00 1.98
3695 3749 2.484770 GCCGTCATGTGCCCTTATAGAA 60.485 50.000 0.00 0.00 0.00 2.10
3696 3750 3.804036 CCGTCATGTGCCCTTATAGAAA 58.196 45.455 0.00 0.00 0.00 2.52
3697 3751 4.389374 CCGTCATGTGCCCTTATAGAAAT 58.611 43.478 0.00 0.00 0.00 2.17
3698 3752 5.547465 CCGTCATGTGCCCTTATAGAAATA 58.453 41.667 0.00 0.00 0.00 1.40
3699 3753 5.408604 CCGTCATGTGCCCTTATAGAAATAC 59.591 44.000 0.00 0.00 0.00 1.89
3700 3754 5.408604 CGTCATGTGCCCTTATAGAAATACC 59.591 44.000 0.00 0.00 0.00 2.73
3701 3755 5.705905 GTCATGTGCCCTTATAGAAATACCC 59.294 44.000 0.00 0.00 0.00 3.69
3702 3756 4.717279 TGTGCCCTTATAGAAATACCCC 57.283 45.455 0.00 0.00 0.00 4.95
3703 3757 4.312487 TGTGCCCTTATAGAAATACCCCT 58.688 43.478 0.00 0.00 0.00 4.79
3704 3758 4.349930 TGTGCCCTTATAGAAATACCCCTC 59.650 45.833 0.00 0.00 0.00 4.30
3705 3759 3.914435 TGCCCTTATAGAAATACCCCTCC 59.086 47.826 0.00 0.00 0.00 4.30
3706 3760 3.055312 GCCCTTATAGAAATACCCCTCCG 60.055 52.174 0.00 0.00 0.00 4.63
3707 3761 4.422984 CCCTTATAGAAATACCCCTCCGA 58.577 47.826 0.00 0.00 0.00 4.55
3708 3762 4.466726 CCCTTATAGAAATACCCCTCCGAG 59.533 50.000 0.00 0.00 0.00 4.63
3709 3763 4.081586 CCTTATAGAAATACCCCTCCGAGC 60.082 50.000 0.00 0.00 0.00 5.03
3710 3764 1.713297 TAGAAATACCCCTCCGAGCC 58.287 55.000 0.00 0.00 0.00 4.70
3711 3765 1.069258 GAAATACCCCTCCGAGCCG 59.931 63.158 0.00 0.00 0.00 5.52
3712 3766 1.683418 GAAATACCCCTCCGAGCCGT 61.683 60.000 0.00 0.00 0.00 5.68
3713 3767 1.269703 AAATACCCCTCCGAGCCGTT 61.270 55.000 0.00 0.00 0.00 4.44
3714 3768 1.269703 AATACCCCTCCGAGCCGTTT 61.270 55.000 0.00 0.00 0.00 3.60
3715 3769 1.683418 ATACCCCTCCGAGCCGTTTC 61.683 60.000 0.00 0.00 0.00 2.78
3716 3770 4.468689 CCCCTCCGAGCCGTTTCC 62.469 72.222 0.00 0.00 0.00 3.13
3717 3771 4.814294 CCCTCCGAGCCGTTTCCG 62.814 72.222 0.00 0.00 0.00 4.30
3718 3772 4.065281 CCTCCGAGCCGTTTCCGT 62.065 66.667 0.00 0.00 0.00 4.69
3719 3773 2.506438 CTCCGAGCCGTTTCCGTC 60.506 66.667 0.00 0.00 0.00 4.79
3720 3774 3.984200 CTCCGAGCCGTTTCCGTCC 62.984 68.421 0.00 0.00 0.00 4.79
3721 3775 4.367023 CCGAGCCGTTTCCGTCCA 62.367 66.667 0.00 0.00 0.00 4.02
3722 3776 2.809601 CGAGCCGTTTCCGTCCAG 60.810 66.667 0.00 0.00 0.00 3.86
3723 3777 2.342648 GAGCCGTTTCCGTCCAGT 59.657 61.111 0.00 0.00 0.00 4.00
3724 3778 1.737008 GAGCCGTTTCCGTCCAGTC 60.737 63.158 0.00 0.00 0.00 3.51
3725 3779 2.029964 GCCGTTTCCGTCCAGTCA 59.970 61.111 0.00 0.00 0.00 3.41
3726 3780 1.595929 GCCGTTTCCGTCCAGTCAA 60.596 57.895 0.00 0.00 0.00 3.18
3727 3781 1.566018 GCCGTTTCCGTCCAGTCAAG 61.566 60.000 0.00 0.00 0.00 3.02
3728 3782 0.949105 CCGTTTCCGTCCAGTCAAGG 60.949 60.000 0.00 0.00 0.00 3.61
3729 3783 1.566018 CGTTTCCGTCCAGTCAAGGC 61.566 60.000 0.00 0.00 0.00 4.35
3730 3784 0.250338 GTTTCCGTCCAGTCAAGGCT 60.250 55.000 0.00 0.00 0.00 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.943079 TTGCCAAAAATCTTATCTGATCAGA 57.057 32.000 27.03 27.03 42.37 3.27
1 2 9.031360 CATTTGCCAAAAATCTTATCTGATCAG 57.969 33.333 17.07 17.07 0.00 2.90
116 117 8.856103 TCGTCATAAGATTATTGAGTGACCATA 58.144 33.333 0.00 0.00 32.94 2.74
130 131 2.860735 GCAGCTTCGTCGTCATAAGATT 59.139 45.455 0.00 0.00 0.00 2.40
131 132 2.099921 AGCAGCTTCGTCGTCATAAGAT 59.900 45.455 0.00 0.00 0.00 2.40
133 134 1.585668 CAGCAGCTTCGTCGTCATAAG 59.414 52.381 0.00 0.00 0.00 1.73
135 136 0.808755 TCAGCAGCTTCGTCGTCATA 59.191 50.000 0.00 0.00 0.00 2.15
136 137 0.734253 GTCAGCAGCTTCGTCGTCAT 60.734 55.000 0.00 0.00 0.00 3.06
137 138 1.371758 GTCAGCAGCTTCGTCGTCA 60.372 57.895 0.00 0.00 0.00 4.35
138 139 2.089349 GGTCAGCAGCTTCGTCGTC 61.089 63.158 0.00 0.00 0.00 4.20
163 164 0.936297 GCAGAGGCGTGTGCAAAAAG 60.936 55.000 22.04 0.00 42.60 2.27
179 180 0.303493 AACTACGCACACAAACGCAG 59.697 50.000 0.00 0.00 0.00 5.18
238 239 5.807011 GCAAATCCATTCTATCTGCGTTTTT 59.193 36.000 0.00 0.00 0.00 1.94
239 240 5.343249 GCAAATCCATTCTATCTGCGTTTT 58.657 37.500 0.00 0.00 0.00 2.43
243 244 2.227388 GGGCAAATCCATTCTATCTGCG 59.773 50.000 0.00 0.00 36.21 5.18
251 252 5.635120 AGTATTAGAGGGGCAAATCCATTC 58.365 41.667 0.00 0.00 36.21 2.67
258 259 2.433239 GTCCGAGTATTAGAGGGGCAAA 59.567 50.000 0.00 0.00 0.00 3.68
269 270 9.530633 GTAGATATCAAAACTTGTCCGAGTATT 57.469 33.333 5.32 0.00 0.00 1.89
275 276 5.107133 ACGGTAGATATCAAAACTTGTCCG 58.893 41.667 5.32 7.49 39.09 4.79
294 295 2.567615 AGAGCCAGTAATTCAGAACGGT 59.432 45.455 0.00 0.00 0.00 4.83
373 374 4.952335 GGAAATCCACATCAAGAGGTTGAT 59.048 41.667 0.00 0.00 43.73 2.57
475 477 3.093574 CGTTACGACACTACATACCGTG 58.906 50.000 0.00 0.00 37.18 4.94
517 519 6.540189 AGCTTGCAGGTTAGATTACATTACAG 59.460 38.462 0.00 0.00 0.00 2.74
555 557 4.897025 ATTTGGTACGACGGAAAACAAA 57.103 36.364 11.15 11.15 0.00 2.83
559 561 3.250521 GGTCAATTTGGTACGACGGAAAA 59.749 43.478 0.00 0.00 0.00 2.29
657 660 5.106869 TGCAAATTGACGTGTATCCTGTTAC 60.107 40.000 0.00 0.00 0.00 2.50
658 661 4.998033 TGCAAATTGACGTGTATCCTGTTA 59.002 37.500 0.00 0.00 0.00 2.41
739 744 1.302993 TGGCTCCTGTAAAACCCGC 60.303 57.895 0.00 0.00 0.00 6.13
786 791 0.038526 GGACGCGAGGACTTTTCAGA 60.039 55.000 15.93 0.00 0.00 3.27
804 809 6.618287 TTATTCACGATAGAAATGCTTGGG 57.382 37.500 0.00 0.00 41.38 4.12
852 857 0.988063 AAGGAGGAGAGGGTTTCTGC 59.012 55.000 0.00 0.00 44.03 4.26
858 863 2.231540 CTCGGGAAGGAGGAGAGGGT 62.232 65.000 0.00 0.00 0.00 4.34
1060 1069 2.083774 GACGGATCAACTGATTGGCAA 58.916 47.619 0.68 0.68 36.39 4.52
1097 1106 1.336755 CAAACTTGAACCTGAACCCGG 59.663 52.381 0.00 0.00 0.00 5.73
1151 1165 2.503061 CTCCCTCCATGGCAGACG 59.497 66.667 6.96 0.14 0.00 4.18
1154 1168 2.450320 CCTCCTCCCTCCATGGCAG 61.450 68.421 6.96 5.54 0.00 4.85
1221 1235 1.811679 GGCGTAGAAGCTCCTGTGC 60.812 63.158 0.00 0.00 37.29 4.57
1435 1449 2.182014 TCGTCAACATTATCAGCGTCG 58.818 47.619 0.00 0.00 0.00 5.12
1565 1579 0.251634 CAGGGCTGGAACTTCTCCTC 59.748 60.000 0.00 0.00 45.64 3.71
1580 1594 2.738521 CTTGGCGTCGACACAGGG 60.739 66.667 17.16 7.05 0.00 4.45
1587 1601 3.691342 CCACCTCCTTGGCGTCGA 61.691 66.667 0.00 0.00 40.22 4.20
1609 1623 2.116533 CGCCATCTGCTTGCCATCA 61.117 57.895 0.00 0.00 38.05 3.07
1858 1872 1.096386 GCTGGATCTTCTGCTGCTGG 61.096 60.000 6.69 0.00 37.22 4.85
1914 1928 2.777692 TCTGGATTGGATTAGGTGGGAC 59.222 50.000 0.00 0.00 0.00 4.46
1971 1986 7.698130 GCAGTTGATTGATACTGTAATTGGTTC 59.302 37.037 0.00 0.00 42.86 3.62
1974 1989 6.183360 ACGCAGTTGATTGATACTGTAATTGG 60.183 38.462 0.00 0.00 37.78 3.16
2041 2067 3.564027 GCGTATGCGGGTGAGTGC 61.564 66.667 5.09 0.00 38.78 4.40
2057 2083 3.243724 ACAATAGAGATAGGGGGTGAGC 58.756 50.000 0.00 0.00 0.00 4.26
2059 2085 4.552883 TGACAATAGAGATAGGGGGTGA 57.447 45.455 0.00 0.00 0.00 4.02
2060 2086 5.090139 AGATGACAATAGAGATAGGGGGTG 58.910 45.833 0.00 0.00 0.00 4.61
2061 2087 5.361630 AGATGACAATAGAGATAGGGGGT 57.638 43.478 0.00 0.00 0.00 4.95
2063 2089 6.571344 CGACAAGATGACAATAGAGATAGGGG 60.571 46.154 0.00 0.00 0.00 4.79
2072 2100 2.791560 CGGCTCGACAAGATGACAATAG 59.208 50.000 0.00 0.00 0.00 1.73
2074 2102 1.645034 CGGCTCGACAAGATGACAAT 58.355 50.000 0.00 0.00 0.00 2.71
2075 2103 0.389817 CCGGCTCGACAAGATGACAA 60.390 55.000 0.00 0.00 0.00 3.18
2076 2104 1.215382 CCGGCTCGACAAGATGACA 59.785 57.895 0.00 0.00 0.00 3.58
2077 2105 2.167861 GCCGGCTCGACAAGATGAC 61.168 63.158 22.15 0.00 0.00 3.06
2078 2106 2.184322 GCCGGCTCGACAAGATGA 59.816 61.111 22.15 0.00 0.00 2.92
2079 2107 2.125552 TGCCGGCTCGACAAGATG 60.126 61.111 29.70 0.00 0.00 2.90
2080 2108 1.680522 ATCTGCCGGCTCGACAAGAT 61.681 55.000 29.70 22.27 0.00 2.40
2082 2110 1.880340 GATCTGCCGGCTCGACAAG 60.880 63.158 29.70 15.77 0.00 3.16
2083 2111 1.888436 AAGATCTGCCGGCTCGACAA 61.888 55.000 29.70 4.55 0.00 3.18
2084 2112 2.284798 GAAGATCTGCCGGCTCGACA 62.285 60.000 29.70 5.44 0.00 4.35
2085 2113 1.590259 GAAGATCTGCCGGCTCGAC 60.590 63.158 29.70 16.28 0.00 4.20
2086 2114 2.009424 CTGAAGATCTGCCGGCTCGA 62.009 60.000 29.70 23.53 0.00 4.04
2087 2115 1.591059 CTGAAGATCTGCCGGCTCG 60.591 63.158 29.70 18.77 0.00 5.03
2124 2157 1.031029 ACGAAGGGAGTACGAGGCTC 61.031 60.000 3.87 3.87 0.00 4.70
2127 2160 0.098376 CGAACGAAGGGAGTACGAGG 59.902 60.000 0.00 0.00 0.00 4.63
2130 2163 0.523072 TTCCGAACGAAGGGAGTACG 59.477 55.000 0.00 0.00 33.01 3.67
2131 2164 2.955477 ATTCCGAACGAAGGGAGTAC 57.045 50.000 0.00 0.00 32.78 2.73
2132 2165 4.019174 AGTAATTCCGAACGAAGGGAGTA 58.981 43.478 0.00 0.00 32.78 2.59
2133 2166 2.830321 AGTAATTCCGAACGAAGGGAGT 59.170 45.455 0.00 0.00 32.78 3.85
2134 2167 3.521947 AGTAATTCCGAACGAAGGGAG 57.478 47.619 0.00 0.00 32.78 4.30
2135 2168 3.007182 ACAAGTAATTCCGAACGAAGGGA 59.993 43.478 0.00 0.00 32.78 4.20
2136 2169 3.332034 ACAAGTAATTCCGAACGAAGGG 58.668 45.455 0.00 0.00 32.78 3.95
2137 2170 3.060363 CGACAAGTAATTCCGAACGAAGG 59.940 47.826 0.00 0.00 32.78 3.46
2138 2171 3.481467 GCGACAAGTAATTCCGAACGAAG 60.481 47.826 0.00 0.00 32.78 3.79
2139 2172 2.409378 GCGACAAGTAATTCCGAACGAA 59.591 45.455 0.00 0.00 34.14 3.85
2140 2173 1.987770 GCGACAAGTAATTCCGAACGA 59.012 47.619 0.00 0.00 0.00 3.85
2141 2174 1.722464 TGCGACAAGTAATTCCGAACG 59.278 47.619 0.00 0.00 0.00 3.95
2142 2175 2.991190 TCTGCGACAAGTAATTCCGAAC 59.009 45.455 0.00 0.00 0.00 3.95
2143 2176 3.306917 TCTGCGACAAGTAATTCCGAA 57.693 42.857 0.00 0.00 0.00 4.30
2144 2177 3.306917 TTCTGCGACAAGTAATTCCGA 57.693 42.857 0.00 0.00 0.00 4.55
2145 2178 4.600012 ATTTCTGCGACAAGTAATTCCG 57.400 40.909 0.00 0.00 0.00 4.30
2146 2179 6.903883 TCTATTTCTGCGACAAGTAATTCC 57.096 37.500 0.00 0.00 0.00 3.01
2147 2180 7.910304 ACATCTATTTCTGCGACAAGTAATTC 58.090 34.615 0.00 0.00 0.00 2.17
2148 2181 7.849804 ACATCTATTTCTGCGACAAGTAATT 57.150 32.000 0.00 0.00 0.00 1.40
2149 2182 9.197694 GATACATCTATTTCTGCGACAAGTAAT 57.802 33.333 0.00 0.00 0.00 1.89
2150 2183 8.414003 AGATACATCTATTTCTGCGACAAGTAA 58.586 33.333 0.00 0.00 34.85 2.24
2151 2184 7.941919 AGATACATCTATTTCTGCGACAAGTA 58.058 34.615 0.00 0.00 34.85 2.24
2152 2185 6.810911 AGATACATCTATTTCTGCGACAAGT 58.189 36.000 0.00 0.00 34.85 3.16
2153 2186 8.293157 TCTAGATACATCTATTTCTGCGACAAG 58.707 37.037 0.00 0.00 38.60 3.16
2154 2187 8.076781 GTCTAGATACATCTATTTCTGCGACAA 58.923 37.037 0.00 0.00 38.60 3.18
2155 2188 7.445707 AGTCTAGATACATCTATTTCTGCGACA 59.554 37.037 0.00 0.00 38.60 4.35
2156 2189 7.812648 AGTCTAGATACATCTATTTCTGCGAC 58.187 38.462 0.00 2.94 38.60 5.19
2157 2190 7.987750 AGTCTAGATACATCTATTTCTGCGA 57.012 36.000 0.00 0.00 38.60 5.10
2167 2200 9.427821 ACCTGTCAAATTAGTCTAGATACATCT 57.572 33.333 0.00 0.00 40.86 2.90
2168 2201 9.469807 CACCTGTCAAATTAGTCTAGATACATC 57.530 37.037 0.00 0.00 0.00 3.06
2169 2202 7.928706 GCACCTGTCAAATTAGTCTAGATACAT 59.071 37.037 0.00 0.00 0.00 2.29
2170 2203 7.093509 TGCACCTGTCAAATTAGTCTAGATACA 60.094 37.037 0.00 0.00 0.00 2.29
2171 2204 7.222999 GTGCACCTGTCAAATTAGTCTAGATAC 59.777 40.741 5.22 0.00 0.00 2.24
2172 2205 7.093509 TGTGCACCTGTCAAATTAGTCTAGATA 60.094 37.037 15.69 0.00 0.00 1.98
2173 2206 6.109359 GTGCACCTGTCAAATTAGTCTAGAT 58.891 40.000 5.22 0.00 0.00 1.98
2174 2207 5.011635 TGTGCACCTGTCAAATTAGTCTAGA 59.988 40.000 15.69 0.00 0.00 2.43
2175 2208 5.237815 TGTGCACCTGTCAAATTAGTCTAG 58.762 41.667 15.69 0.00 0.00 2.43
2176 2209 5.222079 TGTGCACCTGTCAAATTAGTCTA 57.778 39.130 15.69 0.00 0.00 2.59
2177 2210 4.067896 CTGTGCACCTGTCAAATTAGTCT 58.932 43.478 15.69 0.00 0.00 3.24
2178 2211 3.365364 GCTGTGCACCTGTCAAATTAGTC 60.365 47.826 15.69 0.00 0.00 2.59
2179 2212 2.554032 GCTGTGCACCTGTCAAATTAGT 59.446 45.455 15.69 0.00 0.00 2.24
2180 2213 2.095059 GGCTGTGCACCTGTCAAATTAG 60.095 50.000 15.69 1.50 0.00 1.73
2181 2214 1.885887 GGCTGTGCACCTGTCAAATTA 59.114 47.619 15.69 0.00 0.00 1.40
2182 2215 0.675633 GGCTGTGCACCTGTCAAATT 59.324 50.000 15.69 0.00 0.00 1.82
2183 2216 0.178981 AGGCTGTGCACCTGTCAAAT 60.179 50.000 15.69 0.00 35.72 2.32
2184 2217 0.472044 TAGGCTGTGCACCTGTCAAA 59.528 50.000 15.69 0.00 38.26 2.69
2185 2218 0.472044 TTAGGCTGTGCACCTGTCAA 59.528 50.000 15.69 0.04 38.26 3.18
2186 2219 0.692476 ATTAGGCTGTGCACCTGTCA 59.308 50.000 15.69 0.00 38.26 3.58
2187 2220 1.826385 AATTAGGCTGTGCACCTGTC 58.174 50.000 15.69 8.97 38.26 3.51
2188 2221 1.888512 CAAATTAGGCTGTGCACCTGT 59.111 47.619 15.69 0.00 38.26 4.00
2189 2222 2.095059 GTCAAATTAGGCTGTGCACCTG 60.095 50.000 15.69 8.52 38.26 4.00
2190 2223 2.162681 GTCAAATTAGGCTGTGCACCT 58.837 47.619 15.69 7.02 41.57 4.00
2223 2256 3.824443 TCAAATCCGGGAAGAAAAACTCC 59.176 43.478 0.00 0.00 0.00 3.85
2225 2258 3.572682 GGTCAAATCCGGGAAGAAAAACT 59.427 43.478 0.00 0.00 0.00 2.66
2226 2259 3.572682 AGGTCAAATCCGGGAAGAAAAAC 59.427 43.478 0.00 0.00 0.00 2.43
2273 2306 4.276678 TCAAGATTCAGTTGCACAAGAAGG 59.723 41.667 0.00 0.00 0.00 3.46
2308 2341 8.854614 AATGACTAGTTAGCTTCAAGTTCAAT 57.145 30.769 0.00 0.00 0.00 2.57
2356 2389 5.733676 TCAACAAGCATATCTACTTCAGCA 58.266 37.500 0.00 0.00 0.00 4.41
2527 2562 3.055891 TGCTTGATCCGAGAGTTGAATCA 60.056 43.478 0.00 0.00 0.00 2.57
2645 2683 4.980434 GTGGCGTGATCTATGTTATACGTT 59.020 41.667 0.00 0.00 34.37 3.99
2684 2732 6.452242 TGTACAAACACGTGATCTATGTCTT 58.548 36.000 25.01 0.00 0.00 3.01
2686 2734 6.887376 ATGTACAAACACGTGATCTATGTC 57.113 37.500 25.01 12.28 38.78 3.06
2834 2882 2.980476 CCTCGTTATCATCGTTCATCGG 59.020 50.000 0.00 0.00 40.32 4.18
2905 2953 1.063616 CTTTGCATGCACTGGATCTCG 59.936 52.381 22.58 0.00 0.00 4.04
2979 3027 7.338196 TCTTTTTCCTTCTTGTTGATGTGTACA 59.662 33.333 0.00 0.00 0.00 2.90
3042 3091 2.821969 CAAGTTAGCATTGCCTTCCAGT 59.178 45.455 4.70 0.00 0.00 4.00
3060 3109 4.494091 ACTCTGGATATGTGGGTTCAAG 57.506 45.455 0.00 0.00 0.00 3.02
3091 3140 4.174411 TCACCTCAGACGTGAATAAGTG 57.826 45.455 0.00 0.00 37.31 3.16
3127 3176 9.260002 CTTAGTTTCAACTTTTGCCAATAATGT 57.740 29.630 0.00 0.00 40.37 2.71
3156 3205 7.020010 GGAGCATTGAATTCATATGTTCGATC 58.980 38.462 23.92 15.42 31.93 3.69
3158 3207 6.017687 CAGGAGCATTGAATTCATATGTTCGA 60.018 38.462 23.92 0.73 31.93 3.71
3196 3245 5.772521 AGCAACTTTACCAACATCATCAAC 58.227 37.500 0.00 0.00 0.00 3.18
3208 3257 8.331730 TCCTCAATACTAAAAGCAACTTTACC 57.668 34.615 0.00 0.00 31.99 2.85
3215 3264 8.522830 CCTTCAAATCCTCAATACTAAAAGCAA 58.477 33.333 0.00 0.00 0.00 3.91
3218 3267 7.340487 AGGCCTTCAAATCCTCAATACTAAAAG 59.660 37.037 0.00 0.00 0.00 2.27
3230 3279 1.283321 GTCCTGAGGCCTTCAAATCCT 59.717 52.381 6.77 0.00 34.81 3.24
3244 3293 0.413434 TGGAGTCCATCTGGTCCTGA 59.587 55.000 8.12 0.28 32.97 3.86
3246 3295 1.504912 CATGGAGTCCATCTGGTCCT 58.495 55.000 22.36 0.00 43.15 3.85
3347 3400 8.777413 ACAATTGATGTATCATTCCATTCTACG 58.223 33.333 13.59 0.00 41.63 3.51
3349 3402 9.631257 ACACAATTGATGTATCATTCCATTCTA 57.369 29.630 13.59 0.00 41.46 2.10
3413 3466 6.995511 TTGCATAAGTTTATGGGTCTGTAC 57.004 37.500 12.42 0.00 40.61 2.90
3427 3480 9.399797 TGATTTGATAGAGAACATTGCATAAGT 57.600 29.630 0.00 0.00 0.00 2.24
3447 3500 6.570692 AGGCAAGCATCTTAGAAATGATTTG 58.429 36.000 0.00 0.00 30.76 2.32
3452 3505 5.505286 CGTAAGGCAAGCATCTTAGAAATG 58.495 41.667 0.00 0.00 0.00 2.32
3496 3549 7.308830 GCACTCTGAGTTGGTGAGATAATTTTT 60.309 37.037 7.77 0.00 33.32 1.94
3497 3550 6.150140 GCACTCTGAGTTGGTGAGATAATTTT 59.850 38.462 7.77 0.00 33.32 1.82
3565 3619 1.428448 TCTTATGCACGCACTCACAC 58.572 50.000 0.00 0.00 0.00 3.82
3567 3621 4.857871 TTAATCTTATGCACGCACTCAC 57.142 40.909 0.00 0.00 0.00 3.51
3590 3644 1.358877 GACGAAAATGCAAATGGCCC 58.641 50.000 0.00 0.00 43.89 5.80
3591 3645 1.358877 GGACGAAAATGCAAATGGCC 58.641 50.000 0.00 0.00 43.89 5.36
3592 3646 1.066929 AGGGACGAAAATGCAAATGGC 60.067 47.619 0.00 0.00 45.13 4.40
3593 3647 4.082245 AGTTAGGGACGAAAATGCAAATGG 60.082 41.667 0.00 0.00 0.00 3.16
3594 3648 5.059404 AGTTAGGGACGAAAATGCAAATG 57.941 39.130 0.00 0.00 0.00 2.32
3595 3649 5.242838 TCAAGTTAGGGACGAAAATGCAAAT 59.757 36.000 0.00 0.00 0.00 2.32
3596 3650 4.580995 TCAAGTTAGGGACGAAAATGCAAA 59.419 37.500 0.00 0.00 0.00 3.68
3597 3651 4.138290 TCAAGTTAGGGACGAAAATGCAA 58.862 39.130 0.00 0.00 0.00 4.08
3598 3652 3.745799 TCAAGTTAGGGACGAAAATGCA 58.254 40.909 0.00 0.00 0.00 3.96
3599 3653 4.759516 TTCAAGTTAGGGACGAAAATGC 57.240 40.909 0.00 0.00 0.00 3.56
3600 3654 5.912955 GTGTTTCAAGTTAGGGACGAAAATG 59.087 40.000 0.00 0.00 0.00 2.32
3601 3655 5.009310 GGTGTTTCAAGTTAGGGACGAAAAT 59.991 40.000 0.00 0.00 0.00 1.82
3602 3656 4.336153 GGTGTTTCAAGTTAGGGACGAAAA 59.664 41.667 0.00 0.00 0.00 2.29
3603 3657 3.878699 GGTGTTTCAAGTTAGGGACGAAA 59.121 43.478 0.00 0.00 0.00 3.46
3604 3658 3.135167 AGGTGTTTCAAGTTAGGGACGAA 59.865 43.478 0.00 0.00 0.00 3.85
3605 3659 2.701951 AGGTGTTTCAAGTTAGGGACGA 59.298 45.455 0.00 0.00 0.00 4.20
3606 3660 3.121738 AGGTGTTTCAAGTTAGGGACG 57.878 47.619 0.00 0.00 0.00 4.79
3607 3661 6.235664 TGATTAGGTGTTTCAAGTTAGGGAC 58.764 40.000 0.00 0.00 0.00 4.46
3608 3662 6.271391 TCTGATTAGGTGTTTCAAGTTAGGGA 59.729 38.462 0.00 0.00 0.00 4.20
3609 3663 6.472887 TCTGATTAGGTGTTTCAAGTTAGGG 58.527 40.000 0.00 0.00 0.00 3.53
3610 3664 9.838339 ATATCTGATTAGGTGTTTCAAGTTAGG 57.162 33.333 0.00 0.00 0.00 2.69
3615 3669 9.442047 GGGATATATCTGATTAGGTGTTTCAAG 57.558 37.037 12.42 0.00 0.00 3.02
3616 3670 9.170890 AGGGATATATCTGATTAGGTGTTTCAA 57.829 33.333 12.42 0.00 0.00 2.69
3617 3671 8.742125 AGGGATATATCTGATTAGGTGTTTCA 57.258 34.615 12.42 0.00 0.00 2.69
3622 3676 9.973450 CGAATTAGGGATATATCTGATTAGGTG 57.027 37.037 12.42 0.00 0.00 4.00
3623 3677 9.937876 TCGAATTAGGGATATATCTGATTAGGT 57.062 33.333 12.42 0.00 0.00 3.08
3627 3681 9.606631 GCTTTCGAATTAGGGATATATCTGATT 57.393 33.333 12.42 7.61 0.00 2.57
3628 3682 8.207545 GGCTTTCGAATTAGGGATATATCTGAT 58.792 37.037 12.42 0.00 0.00 2.90
3629 3683 7.400339 AGGCTTTCGAATTAGGGATATATCTGA 59.600 37.037 12.42 0.00 0.00 3.27
3630 3684 7.493971 CAGGCTTTCGAATTAGGGATATATCTG 59.506 40.741 12.42 0.00 0.00 2.90
3631 3685 7.560368 CAGGCTTTCGAATTAGGGATATATCT 58.440 38.462 12.42 0.00 0.00 1.98
3632 3686 6.258947 GCAGGCTTTCGAATTAGGGATATATC 59.741 42.308 3.96 3.96 0.00 1.63
3633 3687 6.069963 AGCAGGCTTTCGAATTAGGGATATAT 60.070 38.462 0.00 0.00 0.00 0.86
3634 3688 5.248477 AGCAGGCTTTCGAATTAGGGATATA 59.752 40.000 0.00 0.00 0.00 0.86
3635 3689 4.042187 AGCAGGCTTTCGAATTAGGGATAT 59.958 41.667 0.00 0.00 0.00 1.63
3636 3690 3.391296 AGCAGGCTTTCGAATTAGGGATA 59.609 43.478 0.00 0.00 0.00 2.59
3637 3691 2.173569 AGCAGGCTTTCGAATTAGGGAT 59.826 45.455 0.00 0.00 0.00 3.85
3638 3692 1.559682 AGCAGGCTTTCGAATTAGGGA 59.440 47.619 0.00 0.00 0.00 4.20
3639 3693 1.943340 GAGCAGGCTTTCGAATTAGGG 59.057 52.381 0.00 0.00 0.00 3.53
3640 3694 2.632377 TGAGCAGGCTTTCGAATTAGG 58.368 47.619 0.00 0.00 0.00 2.69
3641 3695 4.685169 TTTGAGCAGGCTTTCGAATTAG 57.315 40.909 0.00 0.00 0.00 1.73
3642 3696 5.446143 TTTTTGAGCAGGCTTTCGAATTA 57.554 34.783 0.00 0.00 0.00 1.40
3643 3697 4.320608 TTTTTGAGCAGGCTTTCGAATT 57.679 36.364 0.00 0.00 0.00 2.17
3644 3698 4.525912 ATTTTTGAGCAGGCTTTCGAAT 57.474 36.364 0.00 0.00 0.00 3.34
3645 3699 4.298332 GAATTTTTGAGCAGGCTTTCGAA 58.702 39.130 0.00 0.00 0.00 3.71
3646 3700 3.305335 GGAATTTTTGAGCAGGCTTTCGA 60.305 43.478 0.00 0.00 0.00 3.71
3647 3701 2.989166 GGAATTTTTGAGCAGGCTTTCG 59.011 45.455 0.00 0.00 0.00 3.46
3648 3702 3.329386 GGGAATTTTTGAGCAGGCTTTC 58.671 45.455 0.00 0.00 0.00 2.62
3649 3703 2.038952 GGGGAATTTTTGAGCAGGCTTT 59.961 45.455 0.00 0.00 0.00 3.51
3650 3704 1.625315 GGGGAATTTTTGAGCAGGCTT 59.375 47.619 0.00 0.00 0.00 4.35
3651 3705 1.203225 AGGGGAATTTTTGAGCAGGCT 60.203 47.619 0.00 0.00 0.00 4.58
3652 3706 1.205655 GAGGGGAATTTTTGAGCAGGC 59.794 52.381 0.00 0.00 0.00 4.85
3653 3707 1.827344 GGAGGGGAATTTTTGAGCAGG 59.173 52.381 0.00 0.00 0.00 4.85
3654 3708 1.474077 CGGAGGGGAATTTTTGAGCAG 59.526 52.381 0.00 0.00 0.00 4.24
3655 3709 1.544724 CGGAGGGGAATTTTTGAGCA 58.455 50.000 0.00 0.00 0.00 4.26
3656 3710 0.173481 GCGGAGGGGAATTTTTGAGC 59.827 55.000 0.00 0.00 0.00 4.26
3657 3711 0.817654 GGCGGAGGGGAATTTTTGAG 59.182 55.000 0.00 0.00 0.00 3.02
3658 3712 0.963355 CGGCGGAGGGGAATTTTTGA 60.963 55.000 0.00 0.00 0.00 2.69
3659 3713 1.248101 ACGGCGGAGGGGAATTTTTG 61.248 55.000 13.24 0.00 0.00 2.44
3660 3714 0.963856 GACGGCGGAGGGGAATTTTT 60.964 55.000 13.24 0.00 0.00 1.94
3661 3715 1.378119 GACGGCGGAGGGGAATTTT 60.378 57.895 13.24 0.00 0.00 1.82
3662 3716 1.921869 ATGACGGCGGAGGGGAATTT 61.922 55.000 13.24 0.00 0.00 1.82
3663 3717 2.375345 ATGACGGCGGAGGGGAATT 61.375 57.895 13.24 0.00 0.00 2.17
3664 3718 2.768344 ATGACGGCGGAGGGGAAT 60.768 61.111 13.24 0.00 0.00 3.01
3665 3719 3.781307 CATGACGGCGGAGGGGAA 61.781 66.667 13.24 0.00 0.00 3.97
3667 3721 4.838152 CACATGACGGCGGAGGGG 62.838 72.222 13.24 0.00 0.00 4.79
3672 3726 2.940890 ATAAGGGCACATGACGGCGG 62.941 60.000 13.24 0.00 0.00 6.13
3673 3727 0.249699 TATAAGGGCACATGACGGCG 60.250 55.000 4.80 4.80 0.00 6.46
3674 3728 1.070134 TCTATAAGGGCACATGACGGC 59.930 52.381 0.00 1.87 0.00 5.68
3675 3729 3.469008 TTCTATAAGGGCACATGACGG 57.531 47.619 0.00 0.00 0.00 4.79
3676 3730 5.408604 GGTATTTCTATAAGGGCACATGACG 59.591 44.000 0.00 0.00 0.00 4.35
3677 3731 5.705905 GGGTATTTCTATAAGGGCACATGAC 59.294 44.000 0.00 0.00 0.00 3.06
3678 3732 5.222048 GGGGTATTTCTATAAGGGCACATGA 60.222 44.000 0.00 0.00 0.00 3.07
3679 3733 5.010282 GGGGTATTTCTATAAGGGCACATG 58.990 45.833 0.00 0.00 0.00 3.21
3680 3734 4.920129 AGGGGTATTTCTATAAGGGCACAT 59.080 41.667 0.00 0.00 0.00 3.21
3681 3735 4.312487 AGGGGTATTTCTATAAGGGCACA 58.688 43.478 0.00 0.00 0.00 4.57
3682 3736 4.263374 GGAGGGGTATTTCTATAAGGGCAC 60.263 50.000 0.00 0.00 0.00 5.01
3683 3737 3.914435 GGAGGGGTATTTCTATAAGGGCA 59.086 47.826 0.00 0.00 0.00 5.36
3684 3738 3.055312 CGGAGGGGTATTTCTATAAGGGC 60.055 52.174 0.00 0.00 0.00 5.19
3685 3739 4.422984 TCGGAGGGGTATTTCTATAAGGG 58.577 47.826 0.00 0.00 0.00 3.95
3686 3740 4.081586 GCTCGGAGGGGTATTTCTATAAGG 60.082 50.000 7.20 0.00 0.00 2.69
3687 3741 4.081586 GGCTCGGAGGGGTATTTCTATAAG 60.082 50.000 7.20 0.00 0.00 1.73
3688 3742 3.836562 GGCTCGGAGGGGTATTTCTATAA 59.163 47.826 7.20 0.00 0.00 0.98
3689 3743 3.438183 GGCTCGGAGGGGTATTTCTATA 58.562 50.000 7.20 0.00 0.00 1.31
3690 3744 2.258109 GGCTCGGAGGGGTATTTCTAT 58.742 52.381 7.20 0.00 0.00 1.98
3691 3745 1.713297 GGCTCGGAGGGGTATTTCTA 58.287 55.000 7.20 0.00 0.00 2.10
3692 3746 1.400530 CGGCTCGGAGGGGTATTTCT 61.401 60.000 7.20 0.00 0.00 2.52
3693 3747 1.069258 CGGCTCGGAGGGGTATTTC 59.931 63.158 7.20 0.00 0.00 2.17
3694 3748 1.269703 AACGGCTCGGAGGGGTATTT 61.270 55.000 7.20 0.00 0.00 1.40
3695 3749 1.269703 AAACGGCTCGGAGGGGTATT 61.270 55.000 7.20 0.00 0.00 1.89
3696 3750 1.683418 GAAACGGCTCGGAGGGGTAT 61.683 60.000 7.20 0.00 0.00 2.73
3697 3751 2.284112 AAACGGCTCGGAGGGGTA 60.284 61.111 7.20 0.00 0.00 3.69
3698 3752 3.703127 GAAACGGCTCGGAGGGGT 61.703 66.667 7.20 0.00 0.00 4.95
3699 3753 4.468689 GGAAACGGCTCGGAGGGG 62.469 72.222 7.20 0.00 0.00 4.79
3711 3765 0.250338 AGCCTTGACTGGACGGAAAC 60.250 55.000 0.00 0.00 0.00 2.78
3712 3766 2.142220 AGCCTTGACTGGACGGAAA 58.858 52.632 0.00 0.00 0.00 3.13
3713 3767 3.885814 AGCCTTGACTGGACGGAA 58.114 55.556 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.