>input_sequence_44485
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------------------------------------------------ATGCCCATGTGTGTGAGTGCCCACCCATATAT
AGCTTTCTCCCTCTGGCTCCTTGTCCCCTTGCCAATCAGTTGATCCGTCCAGCACCAGCAAGCAACCGGGTTCAGGTTCA
AGTTTGATCCTCTAGCTTTTTCGGTTGCGTCCGTCGATT-----CGTCTGCCATGGAGGGAGGAGGCGTTCCTTCCGCCC
AGGACGTGTGGGACTGGGAGGTGCTGCCTGACGAGCACAGGAGCTTCTACGCCGAGACCAGGGCCGCATCCCGTGCCCAC
GACGGCGGCGAGGTTCTTGCCGGTAAGGAAAGGGCCCGATCAGCCCGCTCTCGATCACGATTTACTTCGGTTTCCACTCG
TGTTCTCATCCCCGTAACTGCAATTGATCGCGCGCGTAATTTCAGATCACGAAACCGAGGAACCGATCCTGCCTCCCCCG
TCACAAGTCGACGCTGATAATGTTGACGAGTGCAAGGACATCGGCGTCGACGTCGACGTCGTGCCGGCCGGGGCCAGATC
AACCCAAGAGGATGAGGAACCCGCGGCGCCGGAGCTGCTAGTCTCTGACGGCGACGGAGAGGAGAAGTTCCAGCCCTGTG
TCGACGCCAAGGAGGTGGACGATGATGGCAAGCAGATGGCGGCGGCAGAGGCAGTGGAGTCAGAGCTTCCTCCTCACGAG
TTCGCCGCGGGAGAGGAGGAAGAGGGCAAGAAGGAGGAGGACGGGGCGCCGCCGGAGTGCGTGGTGTTCAGCGTGGGGAA
GCTGCGCGTGAACGCGGTCGGGGCGCTGTGCTCGTTCGGGGTCGCGGCGGCCACCGTCTGCGTTTTCCTCGTCGGCGGCA
GGCTGCAGCACCAGAAGCAGCACCAGCACCACCAGCAGCAGAAGATCCAGCTGCAGTTCCTTGGCGATGATAAGGTTTGC
TGACTCGGTCCC-ACCTAATCCAATCCAGAGCATCAGACTCCTTTTCAAATTAGTAACTCAACTTGAACCAATTACAGTA
TCAATCAA----CTGCG-TTTTTTTAGAAACACACTACAAACACTCACATGCATG----C--ACACGCACTCACCCGCAT
ACGCTCACCCCCTAT--CTCTATTGTCATCTTGTC----GAGCCGGCAGATCTT-CAGATTGACGAAGTCGCCACGGAGC
CTCGTACTCCCTTCGTTCGGAATTACTTGTCGCAGAAATAGATGTATCTAGACTAATTTGACAGGTGCACAGCCTAATTT
GACCAGTTCCAACACGGAGTTTTTCTTCCCGGATTTGACCTGACCGGATCGGCGCCACGCCATCCCCTTCTTGTGCAACT
GAATCTTGAAATAGCCTAGGATTGAACTTGAAGCTAACTAGTCATTATTATTTGTCCAAGAGAAGCCTTGCTGAAGTAGA
TATGCT--TGTTGATTTGTGGATGTGCAGAGAATTCAGCAGGTGGTGCAGCAGACATCGAGGCTGAACCAGGCCATGTCA
TCTATGATGGGGGCAGGCGCGTCCACAAGGGCCAACATATCGTTCGGTGGCTTCTACGACGGCTTCTGATCCACCCGCCC
GTGATTCAACTCTCGGATCAAGCACAAGCTGCTGGATTCAACTACGTAGATCTGATGAAGAAAAAGCTAGCTCATGTTAT
AGCAAATCGACAGCCTTGTTAGTAGT---TGTCATGTACTCCAACGTATAACATAGATCACGCCACCTGC----------
AAAAACAAAAAAAGACATAGATCACGTGTTTGTACATAATGCACGATATACTGGATGT----------------------
--------------------------------------------------------------------------------
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------------------------
>chr1A_1_TraesCS1A01G158600
TCTGATCAGATAAGATTTTTGGCAAATGCTGTTTGCATCCTTTTCAATTATATATCAATCCTATTTGTGGTTTTGCTAGA
CTTATGTTGATGGTCTAATCTGTTAATTTAGCATCCTATGGTCACTCAATAATCTTATGACGACGAAGCTGCTGACCAGC
TGACTTTTTGCACACGCCTCTGCGTTTGTGTGCGTAGTTATTGTGAAGCCTGTCGTTGCTGAGGATAGACTGTGGACTAA
AAACGCAGATAGAATGGATTTGCCCCTCTAATACTCGGACAAGTTTTGATATCTACCGTTCTGAATTACTGGCTCTATAT
GGTTTTTGCTCCTGCGTTATTATCCATGGATCGCCATCTATCTTGGGTCACATATCAACCTCTTGATGTGGATTTCCTGC
AGAAGCTTCTGACCTAATTCATTTCCGCGTCATTGATAATTCGTATCAATTCATTTG-TAGCCCCTGCAGTGGAATCACG
GTATGTAGTGTCGTAACGTCGAATACGTCTGTACTGTACTGTAATGTAATCTAACCTGCAAGCTACGCACGCACGCTTTG
TTTTCCGTCGTACCAAATTGACCTCTATTTTAAACCTGTTCTGGTTCTGCTGAACGCCCCGGCCGGGAGTGTCATTGAAT
TTTCTGTTGCCAGGAAC-TGTAACAGGATACACGTCAATTTGCAAGCTTTTTGAGAGAGGCGACACATGTTAATCGCCCA
GTATTCCCAAAAAA--TGTTTACGCGGGTTTTACAGGAGCCACAAATAAACATTTCAACCCTGGCAGAAATCTGAAAAGT
CCTCGCGTCCCAAGCATTTCTATCGTGAATAATGCAGGGCAACTTGGTAGAAGGATGCAGAAACCCTCTCCTCCTTCCCG
AGTGGTAGGCCCCAACCCTTGTCCCCTAGCAGGAAGGATAAGCCCGCACACAAGCTCTCCTCTTCCTTCCTCTGCCTTCT
TCTCCCTTGGTGCAAGGAGCTGG----CTCCTTGACGCTGATGTGCCCATGCCCATGTGTGTGAGTGCCCACCCATATAT
AGCTTTCTCCCTCTGGCTCCTTGTCCCCTTGCCAATCAGTTGATCCGTCCAGCACCAGCAAGCAACCGGGTTCAGGTTCA
AGTTTGATCCTCTAGCTTTTTCGGTTGCGTCCGTCGATT-----CGTCTGCCATGGAGGGAGGAGGCGTTCCTTCCGCCC
AGGACGTGTGGGACTGGGAGGTGCTGCCTGACGAGCACAGGAGCTTCTACGCCGAGACCAGGGCCGCATCCCGTGCCCAC
GACGGCGGCGAGGTTCTTGCCGGTAAGGAAAGGGCCCGATCAGCCCGCTCTCGATCACGATTTACTTCGGTTTCCACTCG
TGTTCTCATCCCCGTAACTGCAATTGATCGCGCGCGTAATTTCAGATCACGAAACCGAGGAACCGATCCTGCCTCCCCCG
TCACAAGTCGACGCTGATAATGTTGACGAGTGCAAGGACATCGGCGTCGACGTCGACGTCGTGCCGGCCGGGGCCAGATC
AACCCAAGAGGATGAGGAACCCGCGGCGCCGGAGCTGCTAGTCTCTGACGGCGACGGAGAGGAGAAGTTCCAGCCCTGTG
TCGACGCCAAGGAGGTGGACGATGATGGCAAGCAGATGGCGGCGGCAGAGGCAGTGGAGTCAGAGCTTCCTCCTCACGAG
TTCGCCGCGGGAGAGGAGGAAGAGGGCAAGAAGGAGGAGGACGGGGCGCCGCCGGAGTGCGTGGTGTTCAGCGTGGGGAA
GCTGCGCGTGAACGCGGTCGGGGCGCTGTGCTCGTTCGGGGTCGCGGCGGCCACCGTCTGCGTTTTCCTCGTCGGCGGCA
GGCTGCAGCACCAGAAGCAGCACCAGCACCACCAGCAGCAGAAGATCCAGCTGCAGTTCCTTGGCGATGATAAGGTTTGC
TGACTCGGTCCC-ACCTAATCCAATCCAGAGCATCAGACTCCTTTTCAAATTAGTAACTCAACTTGAACCAATTACAGTA
TCAATCAA----CTGCG-TTTTTTTAGAAACACACTACAAACACTCACATGCATG----C--ACACGCACTCACCCGCAT
ACGCTCACCCCCTAT--CTCTATTGTCATCTTGTC----GAGCCGGCAGATCTT-CAGATTGACGAAGTCGCCACGGAGC
CTCGTACTCCCTTCGTTCGGAATTACTTGTCGCAGAAATAGATGTATCTAGACTAATTTGACAGGTGCACAGCCTAATTT
GACCAGTTCCAACACGGAGTTTTTCTTCCCGGATTTGACCTGACCGGATCGGCGCCACGCCATCCCCTTCTTGTGCAACT
GAATCTTGAAATAGCCTAGGATTGAACTTGAAGCTAACTAGTCATTATTATTTGTCCAAGAGAAGCCTTGCTGAAGTAGA
TATGCT--TGTTGATTTGTGGATGTGCAGAGAATTCAGCAGGTGGTGCAGCAGACATCGAGGCTGAACCAGGCCATGTCA
TCTATGATGGGGGCAGGCGCGTCCACAAGGGCCAACATATCGTTCGGTGGCTTCTACGACGGCTTCTGATCCACCCGCCC
GTGATTCAACTCTCGGATCAAGCACAAGCTGCTGGATTCAACTACGTAGATCTGATGAAGAAAAAGCTAGCTCATGTTAT
AGCAAATCGACAGCCTTGTTAGTAGT---TGTCATGTACTCCAACGTATAACATAGATCACGCCACCTGC----------
AAAAACAAAAAAAGACATAGATCACGTGTTTGTACATAATGCACGATATACTGGATGTAAATAATTGGGAGTGTTGGACC
GTGGCCGGGGCCGGCTGTATGTGTATGCACATGAGGATGGATTCATTAATAGATTTGTTATTAAGTTCATAGATAAGGGA
TCCGATGAACGATGATAACGAGGCCAAGAAGAAAGAACTCGCAGAGTTGATTGAGTACCTTTTGGAGCTGGACGAGATCC
AGTGCATGCAAAGGTCAAGAGTAAATTGGTTACAGAAGGGTGACCGCAACACAAGCTTTTTTCAGGTGTACACATCAACA
AGAAGGAAAAAGAACTTCATTAAAATGTT-AAAAATAATGATGGTGAATGACTGGAAGGCAATGCTAACTTGAACCCACA
TATCCAGAGTTATTTTGAGCACTTATTCACGTCTGAGGTGAACCAAACTGACCCGACATTATTGGCAAAAGTTGAAACTA
AGGTGATCGAACATATGAATTCAATGCTCCTGGCCCCTTTTACCGTTGATGATGTTGGTAAAGTTGCTTTTAGTATTGAG
GATTTGAAGGCCTCAGGACCAGATGGACTCCATGCAGTTTTTTT----AAGTATTGGTCTCTTCTTGGTGACGAGATCAC
ACAAGAGGTTTTGATTGCTATAAAATCTAGGGAAATTCCCGTAGAATGGAATGATACATCAATTGTGTTGATACCTAAGG
TTGATAATCCAGAAGTGGTAACTCAGTACAGACCCATAAACTTATGCAATGTTCTCTATCAAATCATTTCTAAGATGCTT
GCCTTACGCCTGAAAAGTATTTTGCCTGAAAAATTATCT-CACCAACTCAGAGTGCTTTTGTTCCTGGGAGACTAATCAC
TGACAATATCCTCATTGCGTGTGAGTGCGTGCATAAGATTAAAGGGCCATTTGCATTTTCGTCCCTAACTTGAAACACCT
AATCAGATATATCCCTAATTCGAAAGCCTGCTCAAAAATTCCCCTCCGCCGTCATGTGCCCTTATAGAAATACCCCTCCG
AGCCGTTTCCGTCCAGTCAAGGCT
>chr1D_3
--TGATCAGATAAGATTTTTGGCAAATGCTGTTTGAATCCTTTTCAATTATATATCAATCCTATTTGTGGTTTTGCTAGG
CTTCTGTTGATGGTATAATCTGTTAATTTAGCATCCAATGGTCACTCAATCTTATC---ACGACGAAGCTGCTGACCAGC
TGATTTTTTGCACACGCCTTTGCGTTTGTGTGCGTAGTTATTGTGAAGCCTGTCGTTGCTGAGGATAGACTGTGGACTTG
AAATGCAGATACAATGGA-TTGCCCCTCTGATACTAGGACAAGTTTTGATATCTCCCGTTCTGAATTACTGGCTCTATAT
GGTTTTTGCTCCTGCGTGATTATCCATGGATCGCCATCTATCTTGGGTCACATCTCAACCTCTTGATGTGGATTTCCTGC
AGAAGCTTCTGACCTAATTCATTTCCGCGTCATTGATAATTCGTATCAATTCATTTG-TAGCCCCTGCAGTGGAATTACG
GTACGTAGTGTCGTCACGTCGAATACGTCTGTACTGTAATGTAATGTAATCTAACCTGCAAGCTACGCACGCACGCCTTG
CTTTCCGTCGTACCAAATTGACCTCTATTTTAAACTTGCTCTAGTTCTGTTGAACGCCCCGGCAGGGAGTGTCATTGAAT
TTTCTGTTGCCAGGAAC-TTCAACAGGATACACGTCAATTCGCAAGCTTTTGGAGAGAAGCGACACATGTTAATCGCGCA
AAATTCCCAAAAAAAATGTTTACACGGGTTTTACAGGAGCCACAAATAAACATTTCAACTCCGGCAGAAACCTGAAAAGT
CCTCGCCTTCCAAGCATTTCTATCGTGAATAATGCAGGGCAACTTGGTAGAAGGATACAGAAGCCCTCTCCTCCTTCCCG
AGTGGTAGGCCCCAACCCTTGTCCCCTAGCAGGAAGGATAAGCCCGCACACAAGCTCTCCTCTTCCTTCCTCTGCCTTCT
TCTCCCTTGGTGCAAGGAGCTGGCTGGCTCCTTGACGCTGATGTGCCCATGCCCATGTGTGTGAGTGCA-ACCCATATAT
AGCTTTCTCCCTCTGGCCCCTTGTCCCCCTGCCAATCAGTTGATCCGTCCAGCACCAGCAAGCAATCGGGTTCAGGTTCA
GGTTCGATCCTCTAGCTTTTGCGGTTGCGTCCGTCGATT-----TGTTTGCCATGGAGGGAGGAGGCGTTCCTTCCGTCC
AGGACGTGTGGGACTGGGAGGTGCTGCCTGACGAACACAGGAGCTTCTACGCCGAGACCAGGGCCGCATCCCGTGCCCAC
GCCGGCGGCGAGGTTCTCGCCAGTAAGG-AAGGGCCCGATCAGCCCGCTCTCGATCACGATTTGCTTCGGTTTCCACTCG
TGTTCTCATCCCCGTAACTGTAATTGATCGCGCGCGTAATTTCAGATCACGAAACCGAGGAACCGATCCTGCCTCCTCCC
TCACAAGTGGACGCTGATAATGTTGACGAGTGCAAGGACATCGGCGTCG------ACGTCGTGCCGGCCGGGGCCAGATC
AACCCAAGAGGATGAGGAACCCGCGGCGCCGGAGCTGCTAGTCTCTGACGGCAACGGACAGGACAAGTTCCAGACCTGTG
GCGACGCCAAGGAGGTGGACGACGATGGCAAGCAGATGGCGGCGGCAGAGGCAGTGGAGTCAGAGCTTCCTCCTCACGAG
TTCGCCGCGGGAGAGGAGGAAGAGGGCAAGAAGGAGGAGGACGCGGCGCCGCCGGAGTGCGTGGTGTTCAGCGTGGGGAA
GCTGCGCGTGAACGCGGTCGGGGCGCTGTGCTCGTTCGGGGTGGCGGCGGCCACCGTCTGCGTTTTCCTCGTCGGCGGCA
GGCTGCAGCACCAGAAGCAGCACCAGCAGCAGCAGCAGCAGAAGATCCAGCTGCAGTTCCTTGGCGATGATAAGGTTTGC
TGACTCGCTCCCTACCTAATCCAATCCAGAGC-TCAGACTCCTTTTCAAATTAGTAACTCAACTTAAATCAATTACAGTA
TCAATCAATCAACTGTGTTTTTTTTAGAAACACACTACAAACACTCACATACATGTGCGC--ACACACACTCACCCGCAT
ACACGTGCTCCCTAT--CTATGAGCATCTTCACGAGATTGAGCCGGCAGATCTT-CAGATTGACGAAGTCGTCACATAGG
CTTCGTAGTTGAC--------------------------------------------------GGTGCACAGCCTAATTT
GCCCCGTTCCAACACTGGATTTTTCTTCCCGGATTCGTCCTGGCCGGATCGGCGCCACACCATCCGCTTCTTGTGCAACT
GAATCTTGAAATAGCCTAGGGTTGAACTTGAAGCTAACTAGCCATTATTATTTGTCCAAGAGAAGCCTGGCTGAAGTAAT
ACATATGCTGTTGATCTGTCGATGTGCAGAGAATTCAGCAGGTGGTGCAGCAGACATCGAGGCTGAACCAGGCCATGTCA
TCCATGATGGGGGCAGGCGCGTCCACGAGGGCCAACATATCGTTCGGTGGCTTCTACGACGGCTTCTGATCCACCCGCCC
GCGATTCAACTCTCGGATCAAGCACAAGCTGCTGGATTCAACTACGTAGATCTGATGAAGAAAAAGCTAGCTCATGTTAT
AGCAAATCGACAGCTTTGTTAGTAGTAGTTGTCATGTACTCCTACGCATAACATAGATCACGCCACCCGCAAAAAAAACA
AAAAAAAAAAACAAACATAGATCACGTGTTTGTACATAATGCACGATATACTGGATGTAAATAATTGGGAGTGTTGGACC
GTGGCCGGGGCCGGCTGTATGTGTATGCACATGAGGATGGATTCATTAATAGATTTGTTATTAAGTTCATAGATAAGGGA
T-------------------------------------------------------------------------------
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>chr1B_282
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-----------------------------------------AGTTCTGATATCTCCCGTTCTGAATTACTGGCCCTATAT
GGTTTTTGTTCCTGCGTGATTATCCATCGATCGCCATCTATCTTGGGTCACATCTCAACCTCTTGATGTTGATTTCTTAC
AGAAGCTTCTGACCTAATTCATTTCCGCGTCATTGATAATTAGTATCATTTCATTTTTTAGCCCCTGCAGTGGAATTACG
GTATGTAGTGTCGTAACGTCGAATACGTCTGTACTGTAAT-----GTAATCTAACCTGCAAGCTACGCACGCACGCCTTG
CTTTCTGTCGTACCAAATTGACCTCTATTTTAAACCTGTTCTGGTTCTGTTGAACGCCCCGGCCGGGAGTGTCATTGAAT
TTTCTGTTGCCAGGATTTTTGAAAAGGATACACGTCAATTTGCAAGCTTTTTGAGAGAGGCGACACATGTTAATCGCGCA
ATGTTCTCAAAAAA--TGTTTACACGGGTTTTACAGGAGCCACAAATAAACATTTCAACCCTGGCCGAAACCTGAAAAGT
CATCGCGTTCCAGGCATTTCTATCGTGAATAATGCACGGCAACTTGGTAGAACGATACAGAACCCCTCT-CTCCTTCGCG
AGTGGTAGGCCCCAACCCTTGTCCCCTAGCAGGAAGGATAAGCCCGCACACAAGCTCTCCT----CTTCCTCTGCCTTCT
TCTCCCTTGGTGCAAGGAGCTGGCTA----CTTGACGCTGATGTGCCCATGCCCATGTGTGTGAGTGCCCACCCATATAT
AGCTTTCTCCCTCTGGCTCCTTGCTCCCCTGCCAATCAGTTGATCCGTCCAGCGCCAGCAAGCAATCGGGTTC------A
AGCTTGATCCTCTAGCTTTTGCGGTTGCGTCCGTCGATTAGTTTTGTTTGCCATGGAGGGAGGAGGCGTTCCTTCCGTCC
AGGACGTCTGGGACTGGGAGGTGCTGCCTGACGAACACAGGAGCTTCTACGCGGAGACCAGGGCCGCATCCCGTGGTCAC
GGCGGCGGCGAGGTTCTTGCCGGTAAGG-AAGGGTCCGATCAGCCCGCTCTCGATCACGATTCACTTCGGTTTCCACTCG
TGTTCTCATCCCTGTAACTGCAATTGATCGCGCGCGTAATTTCAGATCACGAAACCGAGGAACCGATCATGCCTCGTCCG
TCACAAGTGGACGCTGATAATGTTGACGAGTGCAAGGACATCGGCGTCG------ACGTCGTGCCGGCCGGGGCGAGATC
AACCCAAGAGGATGAGGAACCCGCGGCGCCGGAGCTGCTAGTCTCTGACGGCGACGGACAGGAGAAGTTCCAGGCCTGCG
ACGACGCCAAGGAGGTGGACGACGATGGCAGGCAGATGGCGGCGGCAGAGGAAGGGGAGTCAGCGCTTCCTCCTCACGAA
TTCGCCGCGGGAGAGGAGGAAGAGGGCAAGAAGGAGGAGGACGGGGCGCCGCCGGAGTGCGTGGTGTTCAGCGTGGGGAA
GCTGCGCGTGAACGCGGTCGGGGCGCTGTGCTCGTTCGGGGTGGCGGCGGCCACCGTCTGCGTGTTCCTCGTCGGCGGCA
GGCTGCAGCACCAGAAGCAGCACCAGCACCAGCAGCAGCAGAAGATCCAGCTGCAGTTCCTTGGCGATGATAAGGTTTGC
TGACTCGCTCCCTACCTAATCCAATCCAGAGCATCAGACTCCTGTTCAAATTAGTAACTCAACTTAAATCAATTACAGTA
TCAATCAA----CTGTTTTTTATTTAGAAACACACTACAAACACTCGCATACATG----CGCACACACACTCA-CCGCAT
ACACGTGCTCCCTATTCCTACGAGCATCTTCACGAGATTGAGCCGGCAGATCTTTCAGATTAATGAAGTCGCCACATACG
CTTCGTAGTTGCC--------------------------------------------------GGTGCACAG--------
--------CCAACACCGGATTTTTCTTCCCGGATTTGACCTGGCCGGATCGGCGCCACGCCATCCGCTTCTTGTGCAACT
GAATCTTGAAATAGCCTAGGGTTGAACTTGAAGCTAACTAGTCATTATTATTTGTCCAATAGAAGCCTGGCTGAAGTTGA
TATGCT--TGTTGATT------TGTGCAGAGAATTCAGCAGGTGGTGCATCAGACATCGAGGCTGAACCAGGCCATGTCA
TCTATGATGGGGGCAGGCGCGTCCACAAGGGCCAACATATCATTCGGTGGCTTCTACGACGGCTTCTGATGAT-CCACCC
GCGATTCAA--CTCGGATCAAGCACAAGCTGCTGGATTCAACTACGTAGATCTGATGAAGAAAAAGCTAGCTCATGTTAT
AGCAAATCGACAGCCTTGTTAGTAGT---TGTCATGTATAACGCCATCCG------------------------------
-AAAAAAAACACACACATAGATCACGTGTTTGTACATAATGCACGATATACTGGATGTAAATAATTGGGAGTGTTGGACC
GTGGCCGGGGCCGGCTGTATGTGTATGCACATGAGGATGGATTCATTAATAGATTTGTTATTAAGTTCATAGATAAGG--
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>chr1D_2830
GGGTC---------------------------------------------------------------------------
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--CGATGAACGATGATAACGAGGCCAAGAAGAAAGAACTCGCAGAGTTGATCGAGTACCTTTTGGAGCTGGAAGAGATCC
AGTGCATGCAAAGGTCAAGAGTAAATTGGTTACACAAGGGTGACCGCAACACAAGCTTTTTTCAGGCGTACGCATCAGCA
AGAAGGAAGAAGAACTTCATTAAAAAGTTAAAAAATAATGATGGTGAATGGCTGGAAGGCAATGCTAATTTGAACCCACA
TATCCGGAGTTATTTTGAGAACTTATTCACGTCTGAGGTGAACCAAACTGACCCGGCATTATTGGCGAAAGTTGAAACTA
AGGTAACCGAACATATGAATTCAATGCTCTTGGCCCCTTTTACCCTTGATGATGTTCGTAAAGCTGTTTTTAGTATTG-G
GATTTGAAGGCCCCGGGACCAGATGGACTCCATGCAGTTTTCTTTAAGAAGTATTGGGCTTTTTTTGGTGACGAGATCAC
ACAAGAGGTTTTGATTGCTACAAACTCCAGGAAAATTCCAGCAGAATGGAATGATACATCGATTGTGTTGATACCCAAGG
TTGATAATCCAGAAGTGGTAACTCAATACAGGCCCATAAGCTTATGCAATGTTCTCTATAAAATTATTTCTAAGATGCTT
GCCTTACGCCTAAAAAGTATTTTGCTTG--AAATTATCT-CACCAACTCAGAGTGCTTTTGTTCCTGGGAGACTAATCAC
TGACAATATCCTCATTGCATATGAGTGCGTGCATAAGATTAAA-------------------------------------
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>chr7D_2859
AAGAAA--------------------------------------------------------------------------
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------------------------------GAAAGAATTATCAGAACTTATTGAATACCTCCTAGAATTGGAGGAGATCC
ACATGATGCAGAATTCAAGAGTGACATGGCTGAAGTATGGTGATCGCAATACAGGTTTTTTCCAGGCATACGCATCGGCT
AGAAGGAAAAGGAACTATATTAAGAAGCTAAAAGATAATGATGGTATTTGGATGGAAGGTACGGATTCTCTCAATCCACA
TATTCAGAGTTATTTTGCTAACTTATTCACGTCTGAGGTGCAGCAAACTGACCCCTCTCTCCTGGAAAAAGTAGAATCAA
AAGTCACCATGCAAATGAATGATATGTTACAGGCCCATTTTACACCTGATGATGTTCGCAAAGCTGTGTTCAGCATTGGA
AATTTAAAAGCACCTGGCCCGGATGGTCTTCATGCTATATTTTTCAAGAAGTATTGGCATATCTTAGGTGATGATATTAC
CCATGAGGTACTGATTGCCATTAACTCCAGGCAAATTCTGGCTGAATGGAATGATACCACAATTGTGATGATCCCTAAGA
TTGATACCCCGGAGCTGGTAACTCAATTTAGACCTATCAGTTTGTGTAATGTTTTGTATAAAATTATCTCCAAAATGTTG
GTTGCACGTTTGAAGAATATTCTCCCAG--AGGTAATCT-CCCCCACGCAGAGTGCTTTTGTTCCTGGGAGACTAATCAC
TGATAACATACTCATTGCTTATGAGTGCGTGCATAAGATCAA--------------------------------------
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>chr5D_2859
AAGAAA--------------------------------------------------------------------------
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------------------------------GAAAGAATTATCAGAACTTATTGAATACCTCCTAGAATTGGAGGAGATCC
ACATGATGCAGAATTCAAGAGTGGCATGGCTGAAGTATGGTGATCGCAATACAGGTTTTTTCCAGGCATACACGTCGGCT
AGAAGGAAAAGGAACTATATTAAGAAGTTAAAAGATAATGATGGTATTTGGATGGAAGGTACGGATTCTCTCCATCCACA
TATTCAGAGTTATTTTGCTAACTTATTCACGTATGAGGTGCAGCAAACCGATCCCTCTCTCCTGCAAAAAGTAGAATCAA
AAGTCACCATGCAAATGAATGATATGTTACTGGCCCCTTTTACACCTGATGATGTTTGCAAAGCTGTGTTCAGCATTGGA
GATTTAGAAGCACCTGGCCCAGATGGTCTTCATGCTATATTTTTCAAGAAGTATTGGCATATCTTAGGTGATGATATTAC
CCATGAGGTACTGATTGCCATTAACTCCAGAAAAAATCCGGCTGAATGGAATGATACCACAATTGTGATGATCCCTAAGA
TTGATACCCCAGAGCTGGTAACTCAATTTAGACCTATCAGTTTGTGTAATGTTTTGTATAAAACTATCTCCAAAATGTTG
GCTGCACGTTTGAAGAATATTCTCCCTG--GGGTAGTCTCCCCCCACTCAGAGTGCTTTTGTTCCTGGGAGACTAATAAC
TGATAACATACTCATTGCTTATGAGTGCGTGCATAAGAT-----------------------------------------
--------------------------------------------------------------------------------
------------------------
>SNPs
SS---------------------------------S-------------------------------------------S
---S----------S---------------------S-------------SS-S-SSSS---------------------
---S---------------S----------------------------------------------------------SS
---S-------S------S----------S-----S------------------S-------------------------
-----------------S-----------------------------------S--------------------------
----------------------------------------------------------------------------S---
--------------------------------------S-------------------------------------S---
S------------------------------------------------S------------------------------
-------------------SS--------------------------------------------------------S--
S----------------------S----------------------------------------------S---------
--------S-----------------------------------------------S-----S-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------S------------------------------------S--------------
--------------------S-----------------------S--S-----------------------------S--
----------------------------------S---------------------------------------------
-S--------------------------S---------------------------------------------------
----------------------------------------------------------------------------S---
--------S----------------------------------------SSSSSS-------------------------
----------------------------------------------------------S--------------S------
S---------------------S---------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------S-------------------------------------
-------------------------------S------------------------------------------------
-------S---------------------------------------------------------S--S-----------
---------------S----------------------------------S---------------S-------------
--S-SSS-S----------S-SSSSSSS-SSSSSS----------------------------------------SS--S
--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------
-S--S----------S-SS-----------------------S----------------------S--------------
--------------------S-----------------------------------------------S-----------
-------------------S------------------------------------------------------------
--------------------------------------------------------------------------------
-S------------------------------------------------------------------------------
------------------------------------------S------------------------S------------
-----S-----S-S------------------------------------------------------------------
--------------------------------------------------------------------------------
-S----------------------------------------------------------------------S-------
------------------------------------------------------------------S----------S--
-------------------------S------------------------S-----------------S-----------
-------------------S-----------------------------------S------------------------
----S-S-------------------------------------S-----------S------S--S-----------S-
------------S-S------------------------------------------S--S--S----------------
------------------------S--S---S-------S-S--------------------------------------
-------------------------S-------------S-------------------S----S---------------
----------------------------SS--------------------------------------------------
------------------S-S----------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS
>forward_180
--------------------------------------------------------------------------------
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TGACTTTTTGCACACGCCTC------------------------------------------------------------
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>reverse_2160
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-------------------------------------------------------------------------------C
CTCGTACTCCCTTCGTTCG-------------------------------------------------------------
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>forward_1601
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-------------------------------------------------------------GAGAAGTTCCAGCCCTGTG
T-------------------------------------------------------------------------------
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>reverse_3293
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------------TCAGGACCAGATGGACTCCA------------------------------------------------
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------------------------
