Multiple sequence alignment - TraesCS1A01G132500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G132500 chr1A 100.000 2456 0 0 1 2456 180416224 180413769 0.000000e+00 4536.0
1 TraesCS1A01G132500 chr1A 87.329 1531 121 37 939 2423 86010486 86011989 0.000000e+00 1685.0
2 TraesCS1A01G132500 chr1A 90.407 688 42 14 1013 1681 495448306 495448988 0.000000e+00 883.0
3 TraesCS1A01G132500 chr1A 93.555 481 24 5 1 481 198529069 198528596 0.000000e+00 710.0
4 TraesCS1A01G132500 chr1A 92.693 479 29 5 3 480 197262580 197262107 0.000000e+00 686.0
5 TraesCS1A01G132500 chr1A 88.028 142 15 2 2271 2412 569762752 569762891 1.510000e-37 167.0
6 TraesCS1A01G132500 chr4A 97.113 1524 8 4 936 2423 29300948 29299425 0.000000e+00 2538.0
7 TraesCS1A01G132500 chr4A 89.116 147 14 2 2266 2412 623679783 623679927 5.400000e-42 182.0
8 TraesCS1A01G132500 chr4A 85.714 147 19 2 2266 2412 623723052 623723196 1.180000e-33 154.0
9 TraesCS1A01G132500 chr6B 97.515 1006 16 7 930 1929 614436290 614435288 0.000000e+00 1711.0
10 TraesCS1A01G132500 chr6B 90.828 785 40 23 1671 2432 614435510 614434735 0.000000e+00 1022.0
11 TraesCS1A01G132500 chr7B 97.091 997 19 8 939 1929 587439126 587440118 0.000000e+00 1672.0
12 TraesCS1A01G132500 chr7B 97.311 595 8 2 1837 2423 587440067 587440661 0.000000e+00 1003.0
13 TraesCS1A01G132500 chr2A 88.458 953 54 26 939 1873 772954189 772955103 0.000000e+00 1099.0
14 TraesCS1A01G132500 chr2A 92.469 239 15 3 940 1176 33654619 33654382 3.030000e-89 339.0
15 TraesCS1A01G132500 chr2A 85.135 74 11 0 534 607 445337818 445337891 2.620000e-10 76.8
16 TraesCS1A01G132500 chr6D 82.249 1352 148 44 942 2231 297430742 297429421 0.000000e+00 1083.0
17 TraesCS1A01G132500 chr6D 95.906 171 7 0 768 938 469280671 469280841 6.690000e-71 278.0
18 TraesCS1A01G132500 chr6D 91.228 57 5 0 539 595 27766494 27766438 7.280000e-11 78.7
19 TraesCS1A01G132500 chr5B 82.774 1312 114 49 938 2187 566071424 566072685 0.000000e+00 1068.0
20 TraesCS1A01G132500 chr7A 88.079 906 75 11 1390 2270 33074614 33075511 0.000000e+00 1044.0
21 TraesCS1A01G132500 chr7A 93.763 481 25 5 1 480 358416085 358415609 0.000000e+00 717.0
22 TraesCS1A01G132500 chr7A 95.652 46 1 1 2367 2412 38953003 38953047 3.390000e-09 73.1
23 TraesCS1A01G132500 chr6A 87.845 905 79 11 1391 2270 593993528 593994426 0.000000e+00 1033.0
24 TraesCS1A01G132500 chr5A 83.514 1013 96 38 1221 2174 662953166 662954166 0.000000e+00 880.0
25 TraesCS1A01G132500 chr5A 93.595 484 23 6 1 483 536499513 536499037 0.000000e+00 715.0
26 TraesCS1A01G132500 chr3A 93.773 546 26 6 1 542 306291078 306290537 0.000000e+00 813.0
27 TraesCS1A01G132500 chr3A 93.981 216 13 0 931 1146 702923802 702924017 6.550000e-86 327.0
28 TraesCS1A01G132500 chr3A 97.076 171 2 2 768 938 749113690 749113857 4.000000e-73 285.0
29 TraesCS1A01G132500 chr3A 100.000 33 0 0 2424 2456 749113849 749113881 7.330000e-06 62.1
30 TraesCS1A01G132500 chr2D 87.518 681 40 18 1209 1873 647526249 647525598 0.000000e+00 745.0
31 TraesCS1A01G132500 chr2B 93.555 481 26 5 1 480 346949909 346950385 0.000000e+00 712.0
32 TraesCS1A01G132500 chr2B 90.476 147 12 2 2266 2412 12285611 12285467 2.490000e-45 193.0
33 TraesCS1A01G132500 chr7D 94.186 430 17 5 115 542 336994928 336995351 0.000000e+00 649.0
34 TraesCS1A01G132500 chr7D 93.023 430 23 5 115 542 335902406 335901982 2.680000e-174 621.0
35 TraesCS1A01G132500 chr5D 93.488 430 19 6 115 542 156815099 156815521 4.460000e-177 630.0
36 TraesCS1A01G132500 chr5D 86.680 488 21 9 1221 1694 401325612 401325155 3.650000e-138 501.0
37 TraesCS1A01G132500 chr5D 90.678 236 18 2 938 1172 401326079 401325847 6.590000e-81 311.0
38 TraesCS1A01G132500 chr5D 90.323 155 11 1 771 921 554148915 554148761 1.490000e-47 200.0
39 TraesCS1A01G132500 chr5D 88.415 164 12 3 1 164 165608329 165608485 8.960000e-45 191.0
40 TraesCS1A01G132500 chr1D 95.906 171 7 0 768 938 90255636 90255466 6.690000e-71 278.0
41 TraesCS1A01G132500 chr1D 90.000 50 5 0 538 587 208461397 208461348 5.670000e-07 65.8
42 TraesCS1A01G132500 chr1D 100.000 31 0 0 2424 2454 90255474 90255444 9.490000e-05 58.4
43 TraesCS1A01G132500 chr4B 85.811 148 16 5 2266 2412 656830476 656830333 4.230000e-33 152.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G132500 chr1A 180413769 180416224 2455 True 4536.0 4536 100.0000 1 2456 1 chr1A.!!$R1 2455
1 TraesCS1A01G132500 chr1A 86010486 86011989 1503 False 1685.0 1685 87.3290 939 2423 1 chr1A.!!$F1 1484
2 TraesCS1A01G132500 chr1A 495448306 495448988 682 False 883.0 883 90.4070 1013 1681 1 chr1A.!!$F2 668
3 TraesCS1A01G132500 chr4A 29299425 29300948 1523 True 2538.0 2538 97.1130 936 2423 1 chr4A.!!$R1 1487
4 TraesCS1A01G132500 chr6B 614434735 614436290 1555 True 1366.5 1711 94.1715 930 2432 2 chr6B.!!$R1 1502
5 TraesCS1A01G132500 chr7B 587439126 587440661 1535 False 1337.5 1672 97.2010 939 2423 2 chr7B.!!$F1 1484
6 TraesCS1A01G132500 chr2A 772954189 772955103 914 False 1099.0 1099 88.4580 939 1873 1 chr2A.!!$F2 934
7 TraesCS1A01G132500 chr6D 297429421 297430742 1321 True 1083.0 1083 82.2490 942 2231 1 chr6D.!!$R2 1289
8 TraesCS1A01G132500 chr5B 566071424 566072685 1261 False 1068.0 1068 82.7740 938 2187 1 chr5B.!!$F1 1249
9 TraesCS1A01G132500 chr7A 33074614 33075511 897 False 1044.0 1044 88.0790 1390 2270 1 chr7A.!!$F1 880
10 TraesCS1A01G132500 chr6A 593993528 593994426 898 False 1033.0 1033 87.8450 1391 2270 1 chr6A.!!$F1 879
11 TraesCS1A01G132500 chr5A 662953166 662954166 1000 False 880.0 880 83.5140 1221 2174 1 chr5A.!!$F1 953
12 TraesCS1A01G132500 chr3A 306290537 306291078 541 True 813.0 813 93.7730 1 542 1 chr3A.!!$R1 541
13 TraesCS1A01G132500 chr2D 647525598 647526249 651 True 745.0 745 87.5180 1209 1873 1 chr2D.!!$R1 664
14 TraesCS1A01G132500 chr5D 401325155 401326079 924 True 406.0 501 88.6790 938 1694 2 chr5D.!!$R2 756

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
730 733 0.035458 ACGTGGCTAGCTTGCTTCTT 59.965 50.0 19.45 4.53 0.0 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2433 2822 3.757493 TCTGTCTTCGGAAACTAGGAGTC 59.243 47.826 0.0 0.0 0.0 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 2.084546 CGTTTGGATTTGGGGAGTCTC 58.915 52.381 0.00 0.00 0.00 3.36
185 186 9.429359 CAATTATTAGAGCTGATCCGAATAGTT 57.571 33.333 0.00 0.00 0.00 2.24
189 190 7.818997 TTAGAGCTGATCCGAATAGTTAAGA 57.181 36.000 0.00 0.00 0.00 2.10
190 191 6.716934 AGAGCTGATCCGAATAGTTAAGAA 57.283 37.500 0.00 0.00 0.00 2.52
191 192 7.113658 AGAGCTGATCCGAATAGTTAAGAAA 57.886 36.000 0.00 0.00 0.00 2.52
258 259 3.339141 TCGCTTGTGTGTATTTGGCATA 58.661 40.909 0.00 0.00 0.00 3.14
296 297 5.606348 ACCTTTGTGCCTTGTTATTTTCA 57.394 34.783 0.00 0.00 0.00 2.69
306 307 5.473039 CCTTGTTATTTTCAGCAGGAAAGG 58.527 41.667 4.15 0.00 45.70 3.11
352 353 4.911514 TGCCCTGTACAAGAAAAGAAAC 57.088 40.909 0.00 0.00 0.00 2.78
362 363 9.403583 TGTACAAGAAAAGAAACTTTGGATACT 57.596 29.630 0.00 0.00 37.61 2.12
387 388 7.621006 TGGAAGGTTCGGATTAGGATATAAA 57.379 36.000 0.00 0.00 0.00 1.40
433 435 3.181520 CGGTTGGAAGAAAGCGTGAATAG 60.182 47.826 0.72 0.00 43.94 1.73
464 466 0.817634 TTGAGGTTGTTGGCGTGAGG 60.818 55.000 0.00 0.00 0.00 3.86
532 535 1.000938 GGCAACTCTGGTCAGCAAAAG 60.001 52.381 0.00 0.00 0.00 2.27
533 536 1.949525 GCAACTCTGGTCAGCAAAAGA 59.050 47.619 0.00 0.00 0.00 2.52
534 537 2.358898 GCAACTCTGGTCAGCAAAAGAA 59.641 45.455 0.00 0.00 0.00 2.52
535 538 3.005155 GCAACTCTGGTCAGCAAAAGAAT 59.995 43.478 0.00 0.00 0.00 2.40
536 539 4.500375 GCAACTCTGGTCAGCAAAAGAATT 60.500 41.667 0.00 0.00 0.00 2.17
537 540 5.278463 GCAACTCTGGTCAGCAAAAGAATTA 60.278 40.000 0.00 0.00 0.00 1.40
538 541 6.735694 GCAACTCTGGTCAGCAAAAGAATTAA 60.736 38.462 0.00 0.00 0.00 1.40
539 542 6.566197 ACTCTGGTCAGCAAAAGAATTAAG 57.434 37.500 0.00 0.00 0.00 1.85
540 543 5.474876 ACTCTGGTCAGCAAAAGAATTAAGG 59.525 40.000 0.00 0.00 0.00 2.69
541 544 5.630121 TCTGGTCAGCAAAAGAATTAAGGA 58.370 37.500 0.00 0.00 0.00 3.36
542 545 5.473504 TCTGGTCAGCAAAAGAATTAAGGAC 59.526 40.000 0.00 0.00 0.00 3.85
543 546 4.215399 TGGTCAGCAAAAGAATTAAGGACG 59.785 41.667 0.00 0.00 0.00 4.79
544 547 4.159120 GTCAGCAAAAGAATTAAGGACGC 58.841 43.478 0.00 0.00 0.00 5.19
545 548 3.120338 TCAGCAAAAGAATTAAGGACGCG 60.120 43.478 3.53 3.53 0.00 6.01
546 549 2.161609 AGCAAAAGAATTAAGGACGCGG 59.838 45.455 12.47 0.00 0.00 6.46
547 550 2.515912 CAAAAGAATTAAGGACGCGGC 58.484 47.619 12.47 7.53 0.00 6.53
548 551 2.109425 AAAGAATTAAGGACGCGGCT 57.891 45.000 13.91 0.00 0.00 5.52
549 552 2.973694 AAGAATTAAGGACGCGGCTA 57.026 45.000 13.91 0.00 0.00 3.93
550 553 2.510768 AGAATTAAGGACGCGGCTAG 57.489 50.000 13.91 0.00 0.00 3.42
551 554 0.859882 GAATTAAGGACGCGGCTAGC 59.140 55.000 13.91 6.04 43.95 3.42
552 555 0.532196 AATTAAGGACGCGGCTAGCC 60.532 55.000 24.75 24.75 44.76 3.93
553 556 1.682451 ATTAAGGACGCGGCTAGCCA 61.682 55.000 32.47 10.86 44.76 4.75
554 557 2.292794 TTAAGGACGCGGCTAGCCAG 62.293 60.000 32.47 26.20 44.76 4.85
573 576 2.892425 GCCGCTGCGCTCATTAGT 60.892 61.111 18.00 0.00 0.00 2.24
574 577 2.464459 GCCGCTGCGCTCATTAGTT 61.464 57.895 18.00 0.00 0.00 2.24
575 578 1.349627 CCGCTGCGCTCATTAGTTG 59.650 57.895 18.00 0.00 0.00 3.16
576 579 1.349627 CGCTGCGCTCATTAGTTGG 59.650 57.895 9.88 0.00 0.00 3.77
577 580 1.361668 CGCTGCGCTCATTAGTTGGT 61.362 55.000 9.88 0.00 0.00 3.67
578 581 0.804989 GCTGCGCTCATTAGTTGGTT 59.195 50.000 9.73 0.00 0.00 3.67
579 582 1.202076 GCTGCGCTCATTAGTTGGTTC 60.202 52.381 9.73 0.00 0.00 3.62
580 583 1.061131 CTGCGCTCATTAGTTGGTTCG 59.939 52.381 9.73 0.00 0.00 3.95
581 584 1.337354 TGCGCTCATTAGTTGGTTCGA 60.337 47.619 9.73 0.00 0.00 3.71
582 585 1.324736 GCGCTCATTAGTTGGTTCGAG 59.675 52.381 0.00 0.00 0.00 4.04
583 586 1.324736 CGCTCATTAGTTGGTTCGAGC 59.675 52.381 0.00 0.00 41.87 5.03
584 587 1.324736 GCTCATTAGTTGGTTCGAGCG 59.675 52.381 0.00 0.00 36.84 5.03
585 588 1.324736 CTCATTAGTTGGTTCGAGCGC 59.675 52.381 0.00 0.00 0.00 5.92
586 589 1.075542 CATTAGTTGGTTCGAGCGCA 58.924 50.000 11.47 0.00 0.00 6.09
587 590 1.665679 CATTAGTTGGTTCGAGCGCAT 59.334 47.619 11.47 0.00 0.00 4.73
588 591 1.355971 TTAGTTGGTTCGAGCGCATC 58.644 50.000 11.47 3.18 0.00 3.91
589 592 0.530744 TAGTTGGTTCGAGCGCATCT 59.469 50.000 11.47 0.00 0.00 2.90
590 593 0.320771 AGTTGGTTCGAGCGCATCTT 60.321 50.000 11.47 0.00 0.00 2.40
591 594 0.095417 GTTGGTTCGAGCGCATCTTC 59.905 55.000 11.47 0.00 0.00 2.87
592 595 1.019278 TTGGTTCGAGCGCATCTTCC 61.019 55.000 11.47 7.10 0.00 3.46
593 596 1.447838 GGTTCGAGCGCATCTTCCA 60.448 57.895 11.47 0.00 0.00 3.53
594 597 1.696832 GGTTCGAGCGCATCTTCCAC 61.697 60.000 11.47 0.00 0.00 4.02
595 598 1.805539 TTCGAGCGCATCTTCCACG 60.806 57.895 11.47 2.15 0.00 4.94
600 603 2.434884 CGCATCTTCCACGCACCT 60.435 61.111 0.00 0.00 0.00 4.00
601 604 2.743752 CGCATCTTCCACGCACCTG 61.744 63.158 0.00 0.00 0.00 4.00
602 605 3.044059 GCATCTTCCACGCACCTGC 62.044 63.158 0.00 0.00 37.78 4.85
603 606 1.376424 CATCTTCCACGCACCTGCT 60.376 57.895 0.00 0.00 39.32 4.24
604 607 1.376424 ATCTTCCACGCACCTGCTG 60.376 57.895 0.00 0.00 39.32 4.41
605 608 1.830587 ATCTTCCACGCACCTGCTGA 61.831 55.000 0.00 0.00 39.32 4.26
606 609 1.597854 CTTCCACGCACCTGCTGAA 60.598 57.895 0.00 0.00 39.32 3.02
607 610 1.845809 CTTCCACGCACCTGCTGAAC 61.846 60.000 0.00 0.00 39.32 3.18
608 611 2.591429 CCACGCACCTGCTGAACA 60.591 61.111 0.00 0.00 39.32 3.18
609 612 2.186160 CCACGCACCTGCTGAACAA 61.186 57.895 0.00 0.00 39.32 2.83
610 613 1.723608 CCACGCACCTGCTGAACAAA 61.724 55.000 0.00 0.00 39.32 2.83
611 614 0.100325 CACGCACCTGCTGAACAAAA 59.900 50.000 0.00 0.00 39.32 2.44
612 615 0.100503 ACGCACCTGCTGAACAAAAC 59.899 50.000 0.00 0.00 39.32 2.43
613 616 0.100325 CGCACCTGCTGAACAAAACA 59.900 50.000 0.00 0.00 39.32 2.83
614 617 1.843992 GCACCTGCTGAACAAAACAG 58.156 50.000 0.00 0.00 38.21 3.16
615 618 1.134946 GCACCTGCTGAACAAAACAGT 59.865 47.619 0.00 0.00 37.64 3.55
616 619 2.417243 GCACCTGCTGAACAAAACAGTT 60.417 45.455 0.00 0.00 37.64 3.16
617 620 3.181491 GCACCTGCTGAACAAAACAGTTA 60.181 43.478 0.00 0.00 37.64 2.24
618 621 4.351192 CACCTGCTGAACAAAACAGTTAC 58.649 43.478 0.00 0.00 37.64 2.50
619 622 3.380320 ACCTGCTGAACAAAACAGTTACC 59.620 43.478 0.00 0.00 37.64 2.85
620 623 3.380004 CCTGCTGAACAAAACAGTTACCA 59.620 43.478 0.00 0.00 37.64 3.25
621 624 4.498009 CCTGCTGAACAAAACAGTTACCAG 60.498 45.833 0.00 0.00 37.64 4.00
622 625 3.181491 TGCTGAACAAAACAGTTACCAGC 60.181 43.478 0.00 0.00 43.78 4.85
623 626 3.617669 CTGAACAAAACAGTTACCAGCG 58.382 45.455 0.00 0.00 0.00 5.18
624 627 2.223386 TGAACAAAACAGTTACCAGCGC 60.223 45.455 0.00 0.00 0.00 5.92
625 628 0.666374 ACAAAACAGTTACCAGCGCC 59.334 50.000 2.29 0.00 0.00 6.53
626 629 0.951558 CAAAACAGTTACCAGCGCCT 59.048 50.000 2.29 0.00 0.00 5.52
627 630 1.336755 CAAAACAGTTACCAGCGCCTT 59.663 47.619 2.29 0.00 0.00 4.35
628 631 1.235724 AAACAGTTACCAGCGCCTTC 58.764 50.000 2.29 0.00 0.00 3.46
629 632 0.949105 AACAGTTACCAGCGCCTTCG 60.949 55.000 2.29 0.00 39.07 3.79
642 645 3.499737 CTTCGCCCACCACGCATC 61.500 66.667 0.00 0.00 0.00 3.91
646 649 3.211963 GCCCACCACGCATCCATC 61.212 66.667 0.00 0.00 0.00 3.51
647 650 2.516930 CCCACCACGCATCCATCC 60.517 66.667 0.00 0.00 0.00 3.51
648 651 2.271821 CCACCACGCATCCATCCA 59.728 61.111 0.00 0.00 0.00 3.41
649 652 1.152902 CCACCACGCATCCATCCAT 60.153 57.895 0.00 0.00 0.00 3.41
650 653 1.168407 CCACCACGCATCCATCCATC 61.168 60.000 0.00 0.00 0.00 3.51
651 654 1.227645 ACCACGCATCCATCCATCG 60.228 57.895 0.00 0.00 0.00 3.84
652 655 1.069596 CCACGCATCCATCCATCGA 59.930 57.895 0.00 0.00 0.00 3.59
653 656 1.224069 CCACGCATCCATCCATCGAC 61.224 60.000 0.00 0.00 0.00 4.20
654 657 0.530431 CACGCATCCATCCATCGACA 60.530 55.000 0.00 0.00 0.00 4.35
655 658 0.249615 ACGCATCCATCCATCGACAG 60.250 55.000 0.00 0.00 0.00 3.51
656 659 1.563435 CGCATCCATCCATCGACAGC 61.563 60.000 0.00 0.00 0.00 4.40
657 660 0.533531 GCATCCATCCATCGACAGCA 60.534 55.000 0.00 0.00 0.00 4.41
658 661 1.509703 CATCCATCCATCGACAGCAG 58.490 55.000 0.00 0.00 0.00 4.24
659 662 0.250209 ATCCATCCATCGACAGCAGC 60.250 55.000 0.00 0.00 0.00 5.25
660 663 1.890979 CCATCCATCGACAGCAGCC 60.891 63.158 0.00 0.00 0.00 4.85
661 664 1.153309 CATCCATCGACAGCAGCCA 60.153 57.895 0.00 0.00 0.00 4.75
662 665 1.145598 ATCCATCGACAGCAGCCAG 59.854 57.895 0.00 0.00 0.00 4.85
663 666 2.937379 ATCCATCGACAGCAGCCAGC 62.937 60.000 0.00 0.00 46.19 4.85
672 675 4.513519 GCAGCCAGCACGTACATA 57.486 55.556 0.00 0.00 44.79 2.29
673 676 2.006772 GCAGCCAGCACGTACATAC 58.993 57.895 0.00 0.00 44.79 2.39
686 689 3.811307 GTACATACGTACGTGTGCATG 57.189 47.619 35.49 28.32 40.22 4.06
687 690 1.635844 ACATACGTACGTGTGCATGG 58.364 50.000 35.49 18.49 40.22 3.66
688 691 1.202817 ACATACGTACGTGTGCATGGA 59.797 47.619 35.49 14.48 40.22 3.41
689 692 2.263945 CATACGTACGTGTGCATGGAA 58.736 47.619 28.19 8.13 31.03 3.53
690 693 2.435533 TACGTACGTGTGCATGGAAA 57.564 45.000 30.25 3.44 0.00 3.13
691 694 1.584175 ACGTACGTGTGCATGGAAAA 58.416 45.000 22.14 0.00 0.00 2.29
692 695 2.147958 ACGTACGTGTGCATGGAAAAT 58.852 42.857 22.14 0.00 0.00 1.82
693 696 2.550606 ACGTACGTGTGCATGGAAAATT 59.449 40.909 22.14 0.00 0.00 1.82
694 697 3.747010 ACGTACGTGTGCATGGAAAATTA 59.253 39.130 22.14 0.00 0.00 1.40
695 698 4.213694 ACGTACGTGTGCATGGAAAATTAA 59.786 37.500 22.14 0.00 0.00 1.40
696 699 4.786068 CGTACGTGTGCATGGAAAATTAAG 59.214 41.667 7.22 0.00 0.00 1.85
697 700 4.846779 ACGTGTGCATGGAAAATTAAGT 57.153 36.364 0.00 0.00 0.00 2.24
698 701 5.195001 ACGTGTGCATGGAAAATTAAGTT 57.805 34.783 0.00 0.00 0.00 2.66
699 702 4.981674 ACGTGTGCATGGAAAATTAAGTTG 59.018 37.500 0.00 0.00 0.00 3.16
700 703 4.143347 CGTGTGCATGGAAAATTAAGTTGC 60.143 41.667 0.00 0.00 0.00 4.17
701 704 4.990426 GTGTGCATGGAAAATTAAGTTGCT 59.010 37.500 0.00 0.00 0.00 3.91
702 705 4.989797 TGTGCATGGAAAATTAAGTTGCTG 59.010 37.500 0.00 0.00 0.00 4.41
703 706 4.389687 GTGCATGGAAAATTAAGTTGCTGG 59.610 41.667 0.00 0.00 0.00 4.85
704 707 4.040217 TGCATGGAAAATTAAGTTGCTGGT 59.960 37.500 0.00 0.00 0.00 4.00
705 708 4.389687 GCATGGAAAATTAAGTTGCTGGTG 59.610 41.667 0.00 0.00 0.00 4.17
706 709 3.988819 TGGAAAATTAAGTTGCTGGTGC 58.011 40.909 0.00 0.00 40.20 5.01
707 710 2.986479 GGAAAATTAAGTTGCTGGTGCG 59.014 45.455 0.00 0.00 43.34 5.34
708 711 3.552068 GGAAAATTAAGTTGCTGGTGCGT 60.552 43.478 0.00 0.00 43.34 5.24
709 712 3.726291 AAATTAAGTTGCTGGTGCGTT 57.274 38.095 0.00 0.00 43.34 4.84
710 713 2.704725 ATTAAGTTGCTGGTGCGTTG 57.295 45.000 0.00 0.00 43.34 4.10
711 714 1.669604 TTAAGTTGCTGGTGCGTTGA 58.330 45.000 0.00 0.00 43.34 3.18
712 715 0.941542 TAAGTTGCTGGTGCGTTGAC 59.058 50.000 0.00 0.00 43.34 3.18
713 716 2.047151 AAGTTGCTGGTGCGTTGACG 62.047 55.000 0.00 0.00 43.34 4.35
714 717 2.512745 TTGCTGGTGCGTTGACGT 60.513 55.556 5.36 0.00 43.34 4.34
715 718 2.818487 TTGCTGGTGCGTTGACGTG 61.818 57.895 0.00 0.00 43.34 4.49
716 719 4.012895 GCTGGTGCGTTGACGTGG 62.013 66.667 0.00 0.00 42.22 4.94
717 720 4.012895 CTGGTGCGTTGACGTGGC 62.013 66.667 0.00 0.00 42.22 5.01
718 721 4.539083 TGGTGCGTTGACGTGGCT 62.539 61.111 0.00 0.00 42.22 4.75
719 722 2.356553 GGTGCGTTGACGTGGCTA 60.357 61.111 0.00 0.00 42.22 3.93
720 723 2.380410 GGTGCGTTGACGTGGCTAG 61.380 63.158 0.00 0.00 42.22 3.42
721 724 2.736995 TGCGTTGACGTGGCTAGC 60.737 61.111 6.04 6.04 42.22 3.42
722 725 2.432628 GCGTTGACGTGGCTAGCT 60.433 61.111 15.72 0.00 42.22 3.32
723 726 2.027625 GCGTTGACGTGGCTAGCTT 61.028 57.895 15.72 0.00 42.22 3.74
724 727 1.781555 CGTTGACGTGGCTAGCTTG 59.218 57.895 15.72 7.25 34.11 4.01
725 728 1.497722 GTTGACGTGGCTAGCTTGC 59.502 57.895 15.72 12.01 0.00 4.01
726 729 0.951040 GTTGACGTGGCTAGCTTGCT 60.951 55.000 19.45 0.00 0.00 3.91
727 730 0.250295 TTGACGTGGCTAGCTTGCTT 60.250 50.000 19.45 2.29 0.00 3.91
728 731 0.670546 TGACGTGGCTAGCTTGCTTC 60.671 55.000 19.45 11.53 0.00 3.86
729 732 0.390472 GACGTGGCTAGCTTGCTTCT 60.390 55.000 19.45 0.42 0.00 2.85
730 733 0.035458 ACGTGGCTAGCTTGCTTCTT 59.965 50.000 19.45 4.53 0.00 2.52
731 734 1.160137 CGTGGCTAGCTTGCTTCTTT 58.840 50.000 19.45 0.00 0.00 2.52
732 735 1.129437 CGTGGCTAGCTTGCTTCTTTC 59.871 52.381 19.45 2.69 0.00 2.62
733 736 1.470494 GTGGCTAGCTTGCTTCTTTCC 59.530 52.381 19.45 1.98 0.00 3.13
734 737 0.729690 GGCTAGCTTGCTTCTTTCCG 59.270 55.000 19.45 0.00 0.00 4.30
735 738 0.097849 GCTAGCTTGCTTCTTTCCGC 59.902 55.000 13.17 0.00 0.00 5.54
736 739 1.731720 CTAGCTTGCTTCTTTCCGCT 58.268 50.000 0.00 0.00 0.00 5.52
737 740 2.079925 CTAGCTTGCTTCTTTCCGCTT 58.920 47.619 0.00 0.00 0.00 4.68
738 741 1.322442 AGCTTGCTTCTTTCCGCTTT 58.678 45.000 0.00 0.00 0.00 3.51
739 742 1.000938 AGCTTGCTTCTTTCCGCTTTG 60.001 47.619 0.00 0.00 0.00 2.77
740 743 1.412387 CTTGCTTCTTTCCGCTTTGC 58.588 50.000 0.00 0.00 0.00 3.68
766 769 5.581126 TTTTTCTTGAATGTGTGCTGACT 57.419 34.783 0.00 0.00 0.00 3.41
767 770 4.556942 TTTCTTGAATGTGTGCTGACTG 57.443 40.909 0.00 0.00 0.00 3.51
768 771 1.875514 TCTTGAATGTGTGCTGACTGC 59.124 47.619 0.00 0.00 43.25 4.40
769 772 1.878088 CTTGAATGTGTGCTGACTGCT 59.122 47.619 5.87 0.00 43.37 4.24
770 773 1.232119 TGAATGTGTGCTGACTGCTG 58.768 50.000 5.87 0.00 43.37 4.41
771 774 0.520404 GAATGTGTGCTGACTGCTGG 59.480 55.000 5.87 0.00 43.37 4.85
772 775 0.179009 AATGTGTGCTGACTGCTGGT 60.179 50.000 5.87 0.00 43.37 4.00
773 776 0.887836 ATGTGTGCTGACTGCTGGTG 60.888 55.000 5.87 0.00 43.37 4.17
774 777 1.227645 GTGTGCTGACTGCTGGTGA 60.228 57.895 5.87 0.00 43.37 4.02
775 778 0.604780 GTGTGCTGACTGCTGGTGAT 60.605 55.000 5.87 0.00 43.37 3.06
776 779 0.321034 TGTGCTGACTGCTGGTGATC 60.321 55.000 5.87 0.00 43.37 2.92
777 780 0.036577 GTGCTGACTGCTGGTGATCT 60.037 55.000 5.87 0.00 43.37 2.75
778 781 0.689055 TGCTGACTGCTGGTGATCTT 59.311 50.000 5.87 0.00 43.37 2.40
779 782 1.072806 TGCTGACTGCTGGTGATCTTT 59.927 47.619 5.87 0.00 43.37 2.52
780 783 1.467734 GCTGACTGCTGGTGATCTTTG 59.532 52.381 0.00 0.00 38.95 2.77
781 784 2.082231 CTGACTGCTGGTGATCTTTGG 58.918 52.381 0.00 0.00 0.00 3.28
782 785 1.699083 TGACTGCTGGTGATCTTTGGA 59.301 47.619 0.00 0.00 0.00 3.53
783 786 2.106338 TGACTGCTGGTGATCTTTGGAA 59.894 45.455 0.00 0.00 0.00 3.53
784 787 2.485814 GACTGCTGGTGATCTTTGGAAC 59.514 50.000 0.00 0.00 0.00 3.62
785 788 2.107204 ACTGCTGGTGATCTTTGGAACT 59.893 45.455 0.00 0.00 0.00 3.01
786 789 3.152341 CTGCTGGTGATCTTTGGAACTT 58.848 45.455 0.00 0.00 0.00 2.66
787 790 4.202461 ACTGCTGGTGATCTTTGGAACTTA 60.202 41.667 0.00 0.00 0.00 2.24
788 791 4.922206 TGCTGGTGATCTTTGGAACTTAT 58.078 39.130 0.00 0.00 0.00 1.73
789 792 6.061022 TGCTGGTGATCTTTGGAACTTATA 57.939 37.500 0.00 0.00 0.00 0.98
790 793 6.480763 TGCTGGTGATCTTTGGAACTTATAA 58.519 36.000 0.00 0.00 0.00 0.98
791 794 6.945435 TGCTGGTGATCTTTGGAACTTATAAA 59.055 34.615 0.00 0.00 0.00 1.40
792 795 7.450014 TGCTGGTGATCTTTGGAACTTATAAAA 59.550 33.333 0.00 0.00 0.00 1.52
793 796 7.755373 GCTGGTGATCTTTGGAACTTATAAAAC 59.245 37.037 0.00 0.00 0.00 2.43
794 797 8.934023 TGGTGATCTTTGGAACTTATAAAACT 57.066 30.769 0.00 0.00 0.00 2.66
801 804 9.681062 TCTTTGGAACTTATAAAACTATCCTGG 57.319 33.333 0.00 0.00 0.00 4.45
802 805 8.817092 TTTGGAACTTATAAAACTATCCTGGG 57.183 34.615 0.00 0.00 0.00 4.45
803 806 7.758820 TGGAACTTATAAAACTATCCTGGGA 57.241 36.000 0.00 0.00 0.00 4.37
804 807 8.344939 TGGAACTTATAAAACTATCCTGGGAT 57.655 34.615 7.33 7.33 38.54 3.85
805 808 9.455144 TGGAACTTATAAAACTATCCTGGGATA 57.545 33.333 8.79 8.79 36.17 2.59
815 818 7.899648 AACTATCCTGGGATATAACGATAGG 57.100 40.000 9.47 0.00 37.12 2.57
816 819 6.982899 ACTATCCTGGGATATAACGATAGGT 58.017 40.000 9.47 0.00 37.12 3.08
817 820 7.420029 ACTATCCTGGGATATAACGATAGGTT 58.580 38.462 9.47 0.00 37.12 3.50
818 821 5.995565 TCCTGGGATATAACGATAGGTTG 57.004 43.478 0.00 0.00 39.75 3.77
819 822 5.647230 TCCTGGGATATAACGATAGGTTGA 58.353 41.667 0.00 0.00 39.75 3.18
820 823 6.261435 TCCTGGGATATAACGATAGGTTGAT 58.739 40.000 0.00 0.00 39.75 2.57
821 824 6.154534 TCCTGGGATATAACGATAGGTTGATG 59.845 42.308 0.00 0.00 39.75 3.07
822 825 5.730550 TGGGATATAACGATAGGTTGATGC 58.269 41.667 0.00 0.00 39.75 3.91
823 826 5.247337 TGGGATATAACGATAGGTTGATGCA 59.753 40.000 0.00 0.00 39.75 3.96
824 827 6.070251 TGGGATATAACGATAGGTTGATGCAT 60.070 38.462 0.00 0.00 39.75 3.96
825 828 6.258727 GGGATATAACGATAGGTTGATGCATG 59.741 42.308 2.46 0.00 39.75 4.06
826 829 6.818644 GGATATAACGATAGGTTGATGCATGT 59.181 38.462 2.46 0.00 39.75 3.21
827 830 7.010552 GGATATAACGATAGGTTGATGCATGTC 59.989 40.741 2.46 0.00 39.75 3.06
828 831 3.827008 ACGATAGGTTGATGCATGTCT 57.173 42.857 2.46 0.00 43.77 3.41
829 832 3.461061 ACGATAGGTTGATGCATGTCTG 58.539 45.455 2.46 0.00 43.77 3.51
830 833 3.118629 ACGATAGGTTGATGCATGTCTGT 60.119 43.478 2.46 0.00 43.77 3.41
831 834 3.873361 CGATAGGTTGATGCATGTCTGTT 59.127 43.478 2.46 0.00 0.00 3.16
832 835 5.049828 CGATAGGTTGATGCATGTCTGTTA 58.950 41.667 2.46 0.00 0.00 2.41
833 836 5.698089 CGATAGGTTGATGCATGTCTGTTAT 59.302 40.000 2.46 0.00 0.00 1.89
834 837 6.347160 CGATAGGTTGATGCATGTCTGTTATG 60.347 42.308 2.46 0.00 0.00 1.90
835 838 4.592942 AGGTTGATGCATGTCTGTTATGT 58.407 39.130 2.46 0.00 0.00 2.29
836 839 5.012239 AGGTTGATGCATGTCTGTTATGTT 58.988 37.500 2.46 0.00 0.00 2.71
837 840 5.097529 GGTTGATGCATGTCTGTTATGTTG 58.902 41.667 2.46 0.00 0.00 3.33
838 841 5.335897 GGTTGATGCATGTCTGTTATGTTGT 60.336 40.000 2.46 0.00 0.00 3.32
839 842 5.550232 TGATGCATGTCTGTTATGTTGTC 57.450 39.130 2.46 0.00 0.00 3.18
840 843 5.247862 TGATGCATGTCTGTTATGTTGTCT 58.752 37.500 2.46 0.00 0.00 3.41
841 844 5.706833 TGATGCATGTCTGTTATGTTGTCTT 59.293 36.000 2.46 0.00 0.00 3.01
842 845 5.361135 TGCATGTCTGTTATGTTGTCTTG 57.639 39.130 0.00 0.00 0.00 3.02
843 846 4.161333 GCATGTCTGTTATGTTGTCTTGC 58.839 43.478 0.00 0.00 0.00 4.01
844 847 4.726416 CATGTCTGTTATGTTGTCTTGCC 58.274 43.478 0.00 0.00 0.00 4.52
845 848 3.814625 TGTCTGTTATGTTGTCTTGCCA 58.185 40.909 0.00 0.00 0.00 4.92
846 849 3.814842 TGTCTGTTATGTTGTCTTGCCAG 59.185 43.478 0.00 0.00 0.00 4.85
847 850 4.065088 GTCTGTTATGTTGTCTTGCCAGA 58.935 43.478 0.00 0.00 0.00 3.86
848 851 4.697352 GTCTGTTATGTTGTCTTGCCAGAT 59.303 41.667 0.00 0.00 31.17 2.90
849 852 4.937620 TCTGTTATGTTGTCTTGCCAGATC 59.062 41.667 0.00 0.00 0.00 2.75
850 853 3.684305 TGTTATGTTGTCTTGCCAGATCG 59.316 43.478 0.00 0.00 0.00 3.69
851 854 2.768253 ATGTTGTCTTGCCAGATCGA 57.232 45.000 0.00 0.00 0.00 3.59
852 855 1.795768 TGTTGTCTTGCCAGATCGAC 58.204 50.000 0.00 0.00 0.00 4.20
853 856 1.069978 TGTTGTCTTGCCAGATCGACA 59.930 47.619 0.00 0.00 34.85 4.35
854 857 1.728971 GTTGTCTTGCCAGATCGACAG 59.271 52.381 0.00 0.00 37.64 3.51
855 858 1.256812 TGTCTTGCCAGATCGACAGA 58.743 50.000 0.00 0.00 33.01 3.41
856 859 1.827344 TGTCTTGCCAGATCGACAGAT 59.173 47.619 0.00 0.00 40.38 2.90
857 860 2.234661 TGTCTTGCCAGATCGACAGATT 59.765 45.455 0.00 0.00 37.19 2.40
858 861 3.447229 TGTCTTGCCAGATCGACAGATTA 59.553 43.478 0.00 0.00 37.19 1.75
859 862 4.100035 TGTCTTGCCAGATCGACAGATTAT 59.900 41.667 0.00 0.00 37.19 1.28
860 863 4.447054 GTCTTGCCAGATCGACAGATTATG 59.553 45.833 0.00 0.00 37.19 1.90
861 864 2.759191 TGCCAGATCGACAGATTATGC 58.241 47.619 0.00 0.00 37.19 3.14
862 865 2.102925 TGCCAGATCGACAGATTATGCA 59.897 45.455 0.00 0.00 37.19 3.96
863 866 2.735663 GCCAGATCGACAGATTATGCAG 59.264 50.000 0.00 0.00 37.19 4.41
864 867 3.553715 GCCAGATCGACAGATTATGCAGA 60.554 47.826 0.00 0.00 37.19 4.26
865 868 4.625028 CCAGATCGACAGATTATGCAGAA 58.375 43.478 0.00 0.00 37.19 3.02
866 869 4.685165 CCAGATCGACAGATTATGCAGAAG 59.315 45.833 0.00 0.00 37.19 2.85
867 870 4.685165 CAGATCGACAGATTATGCAGAAGG 59.315 45.833 0.00 0.00 37.19 3.46
868 871 2.826428 TCGACAGATTATGCAGAAGGC 58.174 47.619 0.00 0.00 45.13 4.35
869 872 3.181462 ATCGACAGATTATGCAGAAGGCA 60.181 43.478 0.00 0.00 46.11 4.75
881 884 4.548991 GCAGAAGGCATAACTGAATCAG 57.451 45.455 8.98 8.98 43.97 2.90
882 885 3.243002 GCAGAAGGCATAACTGAATCAGC 60.243 47.826 10.62 0.00 43.97 4.26
883 886 3.943381 CAGAAGGCATAACTGAATCAGCA 59.057 43.478 10.62 0.00 34.37 4.41
884 887 4.579340 CAGAAGGCATAACTGAATCAGCAT 59.421 41.667 10.62 2.20 34.37 3.79
885 888 5.761726 CAGAAGGCATAACTGAATCAGCATA 59.238 40.000 10.62 4.55 34.37 3.14
886 889 5.762218 AGAAGGCATAACTGAATCAGCATAC 59.238 40.000 10.62 0.00 34.37 2.39
887 890 5.039920 AGGCATAACTGAATCAGCATACA 57.960 39.130 10.62 0.00 34.37 2.29
888 891 5.628130 AGGCATAACTGAATCAGCATACAT 58.372 37.500 10.62 0.00 34.37 2.29
889 892 5.472478 AGGCATAACTGAATCAGCATACATG 59.528 40.000 10.62 7.75 34.37 3.21
890 893 5.471116 GGCATAACTGAATCAGCATACATGA 59.529 40.000 10.62 0.00 34.37 3.07
891 894 6.348295 GGCATAACTGAATCAGCATACATGAG 60.348 42.308 10.62 0.00 34.37 2.90
892 895 6.426025 GCATAACTGAATCAGCATACATGAGA 59.574 38.462 10.62 0.00 34.37 3.27
893 896 7.570875 GCATAACTGAATCAGCATACATGAGAC 60.571 40.741 10.62 0.00 34.37 3.36
894 897 4.701765 ACTGAATCAGCATACATGAGACC 58.298 43.478 10.62 0.00 34.37 3.85
895 898 4.063689 CTGAATCAGCATACATGAGACCC 58.936 47.826 0.00 0.00 0.00 4.46
896 899 3.455543 TGAATCAGCATACATGAGACCCA 59.544 43.478 0.00 0.00 0.00 4.51
897 900 4.080413 TGAATCAGCATACATGAGACCCAA 60.080 41.667 0.00 0.00 0.00 4.12
898 901 4.719026 ATCAGCATACATGAGACCCAAT 57.281 40.909 0.00 0.00 0.00 3.16
899 902 4.077300 TCAGCATACATGAGACCCAATC 57.923 45.455 0.00 0.00 0.00 2.67
900 903 3.713248 TCAGCATACATGAGACCCAATCT 59.287 43.478 0.00 0.00 41.91 2.40
901 904 3.813724 CAGCATACATGAGACCCAATCTG 59.186 47.826 0.00 0.00 38.00 2.90
902 905 3.457380 AGCATACATGAGACCCAATCTGT 59.543 43.478 0.00 0.00 38.00 3.41
903 906 4.080129 AGCATACATGAGACCCAATCTGTT 60.080 41.667 0.00 0.00 38.00 3.16
904 907 4.036027 GCATACATGAGACCCAATCTGTTG 59.964 45.833 0.00 0.00 38.00 3.33
905 908 5.430886 CATACATGAGACCCAATCTGTTGA 58.569 41.667 0.00 0.00 38.00 3.18
906 909 3.947868 ACATGAGACCCAATCTGTTGAG 58.052 45.455 0.00 0.00 38.00 3.02
907 910 3.328931 ACATGAGACCCAATCTGTTGAGT 59.671 43.478 0.00 0.00 38.00 3.41
908 911 3.407424 TGAGACCCAATCTGTTGAGTG 57.593 47.619 0.00 0.00 38.00 3.51
909 912 2.079925 GAGACCCAATCTGTTGAGTGC 58.920 52.381 0.00 0.00 38.00 4.40
910 913 1.701847 AGACCCAATCTGTTGAGTGCT 59.298 47.619 0.00 0.00 37.01 4.40
911 914 2.079925 GACCCAATCTGTTGAGTGCTC 58.920 52.381 0.00 0.00 37.01 4.26
912 915 1.421268 ACCCAATCTGTTGAGTGCTCA 59.579 47.619 0.00 0.00 37.01 4.26
913 916 2.040813 ACCCAATCTGTTGAGTGCTCAT 59.959 45.455 2.47 0.00 39.64 2.90
914 917 3.087031 CCCAATCTGTTGAGTGCTCATT 58.913 45.455 2.47 0.00 39.64 2.57
915 918 4.263462 ACCCAATCTGTTGAGTGCTCATTA 60.263 41.667 2.47 0.00 39.64 1.90
916 919 4.095483 CCCAATCTGTTGAGTGCTCATTAC 59.905 45.833 2.47 0.39 39.64 1.89
917 920 4.940046 CCAATCTGTTGAGTGCTCATTACT 59.060 41.667 2.47 0.00 39.64 2.24
918 921 5.413833 CCAATCTGTTGAGTGCTCATTACTT 59.586 40.000 2.47 0.00 39.64 2.24
919 922 6.402983 CCAATCTGTTGAGTGCTCATTACTTC 60.403 42.308 2.47 0.00 39.64 3.01
920 923 5.213891 TCTGTTGAGTGCTCATTACTTCA 57.786 39.130 2.47 0.00 39.64 3.02
921 924 5.610398 TCTGTTGAGTGCTCATTACTTCAA 58.390 37.500 2.47 0.00 39.64 2.69
922 925 6.233434 TCTGTTGAGTGCTCATTACTTCAAT 58.767 36.000 2.47 0.00 39.64 2.57
923 926 6.712095 TCTGTTGAGTGCTCATTACTTCAATT 59.288 34.615 2.47 0.00 39.64 2.32
924 927 6.671190 TGTTGAGTGCTCATTACTTCAATTG 58.329 36.000 0.00 0.00 39.64 2.32
925 928 5.885230 TGAGTGCTCATTACTTCAATTGG 57.115 39.130 5.42 0.00 34.14 3.16
926 929 5.316167 TGAGTGCTCATTACTTCAATTGGT 58.684 37.500 5.42 0.00 34.14 3.67
927 930 5.769662 TGAGTGCTCATTACTTCAATTGGTT 59.230 36.000 5.42 0.00 34.14 3.67
928 931 6.265196 TGAGTGCTCATTACTTCAATTGGTTT 59.735 34.615 5.42 0.00 34.14 3.27
929 932 7.446931 TGAGTGCTCATTACTTCAATTGGTTTA 59.553 33.333 5.42 0.00 34.14 2.01
930 933 8.177119 AGTGCTCATTACTTCAATTGGTTTAA 57.823 30.769 5.42 1.25 0.00 1.52
931 934 8.806146 AGTGCTCATTACTTCAATTGGTTTAAT 58.194 29.630 5.42 3.50 0.00 1.40
932 935 9.423061 GTGCTCATTACTTCAATTGGTTTAATT 57.577 29.630 5.42 0.00 39.55 1.40
933 936 9.995003 TGCTCATTACTTCAATTGGTTTAATTT 57.005 25.926 5.42 0.00 36.87 1.82
2429 2818 2.351418 CGCAGATTACTCGCCAATTTCA 59.649 45.455 0.00 0.00 0.00 2.69
2431 2820 4.496341 CGCAGATTACTCGCCAATTTCAAT 60.496 41.667 0.00 0.00 0.00 2.57
2433 2822 5.230726 GCAGATTACTCGCCAATTTCAATTG 59.769 40.000 0.00 0.00 44.12 2.32
2434 2823 6.554419 CAGATTACTCGCCAATTTCAATTGA 58.446 36.000 12.93 3.38 46.72 2.57
2435 2824 6.470235 CAGATTACTCGCCAATTTCAATTGAC 59.530 38.462 7.89 1.59 46.72 3.18
2436 2825 5.957842 TTACTCGCCAATTTCAATTGACT 57.042 34.783 7.89 0.00 46.72 3.41
2437 2826 4.425577 ACTCGCCAATTTCAATTGACTC 57.574 40.909 7.89 2.64 46.72 3.36
2438 2827 3.191371 ACTCGCCAATTTCAATTGACTCC 59.809 43.478 7.89 0.00 46.72 3.85
2439 2828 3.420893 TCGCCAATTTCAATTGACTCCT 58.579 40.909 7.89 0.00 46.72 3.69
2440 2829 4.584874 TCGCCAATTTCAATTGACTCCTA 58.415 39.130 7.89 0.00 46.72 2.94
2441 2830 4.635765 TCGCCAATTTCAATTGACTCCTAG 59.364 41.667 7.89 0.00 46.72 3.02
2442 2831 4.396166 CGCCAATTTCAATTGACTCCTAGT 59.604 41.667 7.89 0.00 46.72 2.57
2443 2832 5.106157 CGCCAATTTCAATTGACTCCTAGTT 60.106 40.000 7.89 0.00 46.72 2.24
2444 2833 6.570378 CGCCAATTTCAATTGACTCCTAGTTT 60.570 38.462 7.89 0.00 46.72 2.66
2445 2834 6.808704 GCCAATTTCAATTGACTCCTAGTTTC 59.191 38.462 7.89 0.00 46.72 2.78
2446 2835 7.315890 CCAATTTCAATTGACTCCTAGTTTCC 58.684 38.462 7.89 0.00 46.72 3.13
2447 2836 6.743575 ATTTCAATTGACTCCTAGTTTCCG 57.256 37.500 7.89 0.00 0.00 4.30
2448 2837 5.477607 TTCAATTGACTCCTAGTTTCCGA 57.522 39.130 7.89 0.00 0.00 4.55
2449 2838 5.477607 TCAATTGACTCCTAGTTTCCGAA 57.522 39.130 3.38 0.00 0.00 4.30
2450 2839 5.479306 TCAATTGACTCCTAGTTTCCGAAG 58.521 41.667 3.38 0.00 0.00 3.79
2451 2840 5.245301 TCAATTGACTCCTAGTTTCCGAAGA 59.755 40.000 3.38 0.00 0.00 2.87
2452 2841 4.516365 TTGACTCCTAGTTTCCGAAGAC 57.484 45.455 0.00 0.00 0.00 3.01
2453 2842 3.493334 TGACTCCTAGTTTCCGAAGACA 58.507 45.455 0.00 0.00 0.00 3.41
2454 2843 3.506455 TGACTCCTAGTTTCCGAAGACAG 59.494 47.826 0.00 0.00 0.00 3.51
2455 2844 3.757493 GACTCCTAGTTTCCGAAGACAGA 59.243 47.826 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 6.596497 TCACGTTCCTTTTTCTTTACTTGTCT 59.404 34.615 0.00 0.00 0.00 3.41
8 9 7.966204 TCTTTCACGTTCCTTTTTCTTTACTTG 59.034 33.333 0.00 0.00 0.00 3.16
96 97 6.346096 GCAACTAGTATTATGAGGTGGTCAA 58.654 40.000 0.00 0.00 39.19 3.18
102 103 4.404715 ACGTGGCAACTAGTATTATGAGGT 59.595 41.667 0.00 0.00 37.61 3.85
258 259 7.035612 GCACAAAGGTAGCAGCTAATTAAAAT 58.964 34.615 2.87 0.00 0.00 1.82
271 272 4.783764 AATAACAAGGCACAAAGGTAGC 57.216 40.909 0.00 0.00 0.00 3.58
296 297 3.197549 GTGATTCTCTCTCCTTTCCTGCT 59.802 47.826 0.00 0.00 0.00 4.24
306 307 5.296780 AGAGATCTGAACGTGATTCTCTCTC 59.703 44.000 0.00 7.98 40.14 3.20
344 345 7.344612 ACCTTCCAAGTATCCAAAGTTTCTTTT 59.655 33.333 0.00 0.00 0.00 2.27
352 353 3.689649 CCGAACCTTCCAAGTATCCAAAG 59.310 47.826 0.00 0.00 0.00 2.77
362 363 7.621006 TTATATCCTAATCCGAACCTTCCAA 57.379 36.000 0.00 0.00 0.00 3.53
387 388 4.729868 ACAGATTGGTAGTTGCCTCTTTT 58.270 39.130 0.00 0.00 0.00 2.27
391 392 2.673368 CGAACAGATTGGTAGTTGCCTC 59.327 50.000 0.00 0.00 0.00 4.70
400 402 2.105821 TCTTCCAACCGAACAGATTGGT 59.894 45.455 2.39 0.00 44.28 3.67
407 409 0.941542 CGCTTTCTTCCAACCGAACA 59.058 50.000 0.00 0.00 0.00 3.18
433 435 5.066505 CCAACAACCTCAATATCTAAGCCAC 59.933 44.000 0.00 0.00 0.00 5.01
498 501 3.632145 AGAGTTGCCTTTTAATATGGCCG 59.368 43.478 0.00 0.00 44.46 6.13
517 520 5.707298 TCCTTAATTCTTTTGCTGACCAGAG 59.293 40.000 0.47 0.00 0.00 3.35
532 535 0.859882 GCTAGCCGCGTCCTTAATTC 59.140 55.000 2.29 0.00 0.00 2.17
533 536 0.532196 GGCTAGCCGCGTCCTTAATT 60.532 55.000 20.16 0.00 40.44 1.40
534 537 1.069258 GGCTAGCCGCGTCCTTAAT 59.931 57.895 20.16 0.00 40.44 1.40
535 538 2.292794 CTGGCTAGCCGCGTCCTTAA 62.293 60.000 28.28 6.87 40.44 1.85
536 539 2.756691 TGGCTAGCCGCGTCCTTA 60.757 61.111 28.28 5.61 40.44 2.69
537 540 4.148825 CTGGCTAGCCGCGTCCTT 62.149 66.667 28.28 0.00 40.44 3.36
560 563 1.061131 CGAACCAACTAATGAGCGCAG 59.939 52.381 11.47 0.00 0.00 5.18
561 564 1.075542 CGAACCAACTAATGAGCGCA 58.924 50.000 11.47 0.00 0.00 6.09
562 565 1.324736 CTCGAACCAACTAATGAGCGC 59.675 52.381 0.00 0.00 0.00 5.92
563 566 1.324736 GCTCGAACCAACTAATGAGCG 59.675 52.381 0.00 0.00 39.36 5.03
564 567 1.324736 CGCTCGAACCAACTAATGAGC 59.675 52.381 2.09 2.09 43.98 4.26
565 568 1.324736 GCGCTCGAACCAACTAATGAG 59.675 52.381 0.00 0.00 0.00 2.90
566 569 1.337354 TGCGCTCGAACCAACTAATGA 60.337 47.619 9.73 0.00 0.00 2.57
567 570 1.075542 TGCGCTCGAACCAACTAATG 58.924 50.000 9.73 0.00 0.00 1.90
568 571 1.933853 GATGCGCTCGAACCAACTAAT 59.066 47.619 9.73 0.00 0.00 1.73
569 572 1.067142 AGATGCGCTCGAACCAACTAA 60.067 47.619 9.73 0.00 0.00 2.24
570 573 0.530744 AGATGCGCTCGAACCAACTA 59.469 50.000 9.73 0.00 0.00 2.24
571 574 0.320771 AAGATGCGCTCGAACCAACT 60.321 50.000 9.73 0.00 0.00 3.16
572 575 0.095417 GAAGATGCGCTCGAACCAAC 59.905 55.000 9.73 0.00 0.00 3.77
573 576 1.019278 GGAAGATGCGCTCGAACCAA 61.019 55.000 9.73 0.00 0.00 3.67
574 577 1.447838 GGAAGATGCGCTCGAACCA 60.448 57.895 9.73 0.00 0.00 3.67
575 578 1.447838 TGGAAGATGCGCTCGAACC 60.448 57.895 9.73 7.74 0.00 3.62
576 579 1.710339 GTGGAAGATGCGCTCGAAC 59.290 57.895 9.73 0.00 0.00 3.95
577 580 1.805539 CGTGGAAGATGCGCTCGAA 60.806 57.895 9.73 0.00 0.00 3.71
578 581 2.202610 CGTGGAAGATGCGCTCGA 60.203 61.111 9.73 0.00 0.00 4.04
579 582 3.918220 GCGTGGAAGATGCGCTCG 61.918 66.667 9.73 2.01 46.55 5.03
583 586 2.434884 AGGTGCGTGGAAGATGCG 60.435 61.111 0.00 0.00 39.76 4.73
584 587 3.044059 GCAGGTGCGTGGAAGATGC 62.044 63.158 0.00 0.00 37.07 3.91
585 588 3.181367 GCAGGTGCGTGGAAGATG 58.819 61.111 0.00 0.00 0.00 2.90
595 598 1.134946 ACTGTTTTGTTCAGCAGGTGC 59.865 47.619 0.00 0.00 42.49 5.01
596 599 3.508744 AACTGTTTTGTTCAGCAGGTG 57.491 42.857 0.00 0.00 36.50 4.00
597 600 3.380320 GGTAACTGTTTTGTTCAGCAGGT 59.620 43.478 0.00 0.00 36.50 4.00
598 601 3.380004 TGGTAACTGTTTTGTTCAGCAGG 59.620 43.478 0.00 0.00 36.50 4.85
599 602 4.601019 CTGGTAACTGTTTTGTTCAGCAG 58.399 43.478 0.00 0.99 36.50 4.24
600 603 3.181491 GCTGGTAACTGTTTTGTTCAGCA 60.181 43.478 18.69 8.51 42.38 4.41
601 604 3.372060 GCTGGTAACTGTTTTGTTCAGC 58.628 45.455 0.00 7.72 39.12 4.26
602 605 3.617669 CGCTGGTAACTGTTTTGTTCAG 58.382 45.455 0.00 1.84 37.92 3.02
603 606 2.223386 GCGCTGGTAACTGTTTTGTTCA 60.223 45.455 0.00 0.00 37.92 3.18
604 607 2.381589 GCGCTGGTAACTGTTTTGTTC 58.618 47.619 0.00 0.00 37.92 3.18
605 608 1.066454 GGCGCTGGTAACTGTTTTGTT 59.934 47.619 7.64 0.00 37.92 2.83
606 609 0.666374 GGCGCTGGTAACTGTTTTGT 59.334 50.000 7.64 0.00 37.92 2.83
607 610 0.951558 AGGCGCTGGTAACTGTTTTG 59.048 50.000 7.64 0.00 37.92 2.44
608 611 1.607148 GAAGGCGCTGGTAACTGTTTT 59.393 47.619 7.64 0.00 37.92 2.43
609 612 1.235724 GAAGGCGCTGGTAACTGTTT 58.764 50.000 7.64 0.00 37.92 2.83
610 613 0.949105 CGAAGGCGCTGGTAACTGTT 60.949 55.000 7.64 0.00 37.92 3.16
611 614 1.374252 CGAAGGCGCTGGTAACTGT 60.374 57.895 7.64 0.00 37.92 3.55
612 615 3.474806 CGAAGGCGCTGGTAACTG 58.525 61.111 7.64 0.00 38.80 3.16
625 628 3.499737 GATGCGTGGTGGGCGAAG 61.500 66.667 0.00 0.00 0.00 3.79
629 632 3.211963 GATGGATGCGTGGTGGGC 61.212 66.667 0.00 0.00 0.00 5.36
630 633 2.516930 GGATGGATGCGTGGTGGG 60.517 66.667 0.00 0.00 0.00 4.61
631 634 1.152902 ATGGATGGATGCGTGGTGG 60.153 57.895 0.00 0.00 0.00 4.61
632 635 1.501337 CGATGGATGGATGCGTGGTG 61.501 60.000 0.00 0.00 0.00 4.17
633 636 1.227645 CGATGGATGGATGCGTGGT 60.228 57.895 0.00 0.00 0.00 4.16
634 637 1.069596 TCGATGGATGGATGCGTGG 59.930 57.895 0.00 0.00 0.00 4.94
635 638 0.530431 TGTCGATGGATGGATGCGTG 60.530 55.000 0.00 0.00 0.00 5.34
636 639 0.249615 CTGTCGATGGATGGATGCGT 60.250 55.000 0.00 0.00 0.00 5.24
637 640 1.563435 GCTGTCGATGGATGGATGCG 61.563 60.000 0.00 0.00 0.00 4.73
638 641 0.533531 TGCTGTCGATGGATGGATGC 60.534 55.000 0.00 0.00 0.00 3.91
639 642 1.509703 CTGCTGTCGATGGATGGATG 58.490 55.000 0.00 0.00 0.00 3.51
640 643 0.250209 GCTGCTGTCGATGGATGGAT 60.250 55.000 0.00 0.00 0.00 3.41
641 644 1.144716 GCTGCTGTCGATGGATGGA 59.855 57.895 0.00 0.00 0.00 3.41
642 645 1.890979 GGCTGCTGTCGATGGATGG 60.891 63.158 0.00 0.00 0.00 3.51
643 646 1.153309 TGGCTGCTGTCGATGGATG 60.153 57.895 0.00 0.00 0.00 3.51
644 647 1.145598 CTGGCTGCTGTCGATGGAT 59.854 57.895 0.00 0.00 0.00 3.41
645 648 2.580815 CTGGCTGCTGTCGATGGA 59.419 61.111 0.00 0.00 0.00 3.41
646 649 3.200593 GCTGGCTGCTGTCGATGG 61.201 66.667 9.31 0.00 38.95 3.51
647 650 2.435410 TGCTGGCTGCTGTCGATG 60.435 61.111 17.45 0.00 43.37 3.84
648 651 2.435586 GTGCTGGCTGCTGTCGAT 60.436 61.111 17.45 0.00 43.37 3.59
650 653 3.914605 TACGTGCTGGCTGCTGTCG 62.915 63.158 17.45 18.73 43.37 4.35
651 654 2.048222 TACGTGCTGGCTGCTGTC 60.048 61.111 17.45 7.20 43.37 3.51
652 655 2.357517 GTACGTGCTGGCTGCTGT 60.358 61.111 17.45 16.63 43.37 4.40
653 656 0.460109 TATGTACGTGCTGGCTGCTG 60.460 55.000 17.45 11.95 43.37 4.41
654 657 0.460284 GTATGTACGTGCTGGCTGCT 60.460 55.000 17.45 0.00 43.37 4.24
655 658 1.752501 CGTATGTACGTGCTGGCTGC 61.753 60.000 9.67 9.67 44.13 5.25
656 659 2.288013 CGTATGTACGTGCTGGCTG 58.712 57.895 4.97 0.00 44.13 4.85
657 660 4.806571 CGTATGTACGTGCTGGCT 57.193 55.556 4.97 0.00 44.13 4.75
666 669 2.532723 CCATGCACACGTACGTATGTAC 59.467 50.000 25.86 14.11 46.09 2.90
667 670 2.422832 TCCATGCACACGTACGTATGTA 59.577 45.455 25.86 22.79 0.00 2.29
668 671 1.202817 TCCATGCACACGTACGTATGT 59.797 47.619 25.86 16.15 0.00 2.29
669 672 1.915952 TCCATGCACACGTACGTATG 58.084 50.000 21.88 21.88 0.00 2.39
670 673 2.658373 TTCCATGCACACGTACGTAT 57.342 45.000 22.34 7.09 0.00 3.06
671 674 2.435533 TTTCCATGCACACGTACGTA 57.564 45.000 22.34 5.72 0.00 3.57
672 675 1.584175 TTTTCCATGCACACGTACGT 58.416 45.000 16.72 16.72 0.00 3.57
673 676 2.892373 ATTTTCCATGCACACGTACG 57.108 45.000 15.01 15.01 0.00 3.67
674 677 5.695818 ACTTAATTTTCCATGCACACGTAC 58.304 37.500 0.00 0.00 0.00 3.67
675 678 5.950758 ACTTAATTTTCCATGCACACGTA 57.049 34.783 0.00 0.00 0.00 3.57
676 679 4.846779 ACTTAATTTTCCATGCACACGT 57.153 36.364 0.00 0.00 0.00 4.49
677 680 4.143347 GCAACTTAATTTTCCATGCACACG 60.143 41.667 0.00 0.00 32.80 4.49
678 681 4.990426 AGCAACTTAATTTTCCATGCACAC 59.010 37.500 0.00 0.00 34.89 3.82
679 682 4.989797 CAGCAACTTAATTTTCCATGCACA 59.010 37.500 0.00 0.00 34.89 4.57
680 683 4.389687 CCAGCAACTTAATTTTCCATGCAC 59.610 41.667 0.00 0.00 34.89 4.57
681 684 4.040217 ACCAGCAACTTAATTTTCCATGCA 59.960 37.500 0.00 0.00 34.89 3.96
682 685 4.389687 CACCAGCAACTTAATTTTCCATGC 59.610 41.667 0.00 0.00 0.00 4.06
683 686 4.389687 GCACCAGCAACTTAATTTTCCATG 59.610 41.667 0.00 0.00 41.58 3.66
684 687 4.568956 GCACCAGCAACTTAATTTTCCAT 58.431 39.130 0.00 0.00 41.58 3.41
685 688 3.551863 CGCACCAGCAACTTAATTTTCCA 60.552 43.478 0.00 0.00 42.27 3.53
686 689 2.986479 CGCACCAGCAACTTAATTTTCC 59.014 45.455 0.00 0.00 42.27 3.13
687 690 3.638484 ACGCACCAGCAACTTAATTTTC 58.362 40.909 0.00 0.00 42.27 2.29
688 691 3.726291 ACGCACCAGCAACTTAATTTT 57.274 38.095 0.00 0.00 42.27 1.82
689 692 3.067461 TCAACGCACCAGCAACTTAATTT 59.933 39.130 0.00 0.00 42.27 1.82
690 693 2.621055 TCAACGCACCAGCAACTTAATT 59.379 40.909 0.00 0.00 42.27 1.40
691 694 2.031157 GTCAACGCACCAGCAACTTAAT 60.031 45.455 0.00 0.00 42.27 1.40
692 695 1.332375 GTCAACGCACCAGCAACTTAA 59.668 47.619 0.00 0.00 42.27 1.85
693 696 0.941542 GTCAACGCACCAGCAACTTA 59.058 50.000 0.00 0.00 42.27 2.24
694 697 1.727467 GTCAACGCACCAGCAACTT 59.273 52.632 0.00 0.00 42.27 2.66
695 698 2.534019 CGTCAACGCACCAGCAACT 61.534 57.895 0.00 0.00 42.27 3.16
696 699 2.052237 CGTCAACGCACCAGCAAC 60.052 61.111 0.00 0.00 42.27 4.17
697 700 2.512745 ACGTCAACGCACCAGCAA 60.513 55.556 1.81 0.00 44.43 3.91
698 701 3.268603 CACGTCAACGCACCAGCA 61.269 61.111 1.81 0.00 44.43 4.41
699 702 4.012895 CCACGTCAACGCACCAGC 62.013 66.667 1.81 0.00 44.43 4.85
700 703 4.012895 GCCACGTCAACGCACCAG 62.013 66.667 1.81 0.00 44.43 4.00
701 704 3.153270 TAGCCACGTCAACGCACCA 62.153 57.895 1.81 0.00 44.43 4.17
702 705 2.356553 TAGCCACGTCAACGCACC 60.357 61.111 1.81 0.00 44.43 5.01
703 706 3.011760 GCTAGCCACGTCAACGCAC 62.012 63.158 2.29 0.00 44.43 5.34
704 707 2.709125 AAGCTAGCCACGTCAACGCA 62.709 55.000 12.13 0.00 44.43 5.24
705 708 2.027625 AAGCTAGCCACGTCAACGC 61.028 57.895 12.13 0.00 44.43 4.84
706 709 1.781555 CAAGCTAGCCACGTCAACG 59.218 57.895 12.13 0.12 46.33 4.10
707 710 0.951040 AGCAAGCTAGCCACGTCAAC 60.951 55.000 12.13 0.00 34.23 3.18
708 711 0.250295 AAGCAAGCTAGCCACGTCAA 60.250 50.000 12.13 0.00 34.23 3.18
709 712 0.670546 GAAGCAAGCTAGCCACGTCA 60.671 55.000 12.13 0.00 34.23 4.35
710 713 0.390472 AGAAGCAAGCTAGCCACGTC 60.390 55.000 12.13 8.93 34.23 4.34
711 714 0.035458 AAGAAGCAAGCTAGCCACGT 59.965 50.000 12.13 0.00 34.23 4.49
712 715 1.129437 GAAAGAAGCAAGCTAGCCACG 59.871 52.381 12.13 0.66 34.23 4.94
713 716 1.470494 GGAAAGAAGCAAGCTAGCCAC 59.530 52.381 12.13 0.50 34.23 5.01
714 717 1.826385 GGAAAGAAGCAAGCTAGCCA 58.174 50.000 12.13 0.00 34.23 4.75
715 718 0.729690 CGGAAAGAAGCAAGCTAGCC 59.270 55.000 12.13 0.00 34.23 3.93
716 719 0.097849 GCGGAAAGAAGCAAGCTAGC 59.902 55.000 6.62 6.62 0.00 3.42
717 720 1.731720 AGCGGAAAGAAGCAAGCTAG 58.268 50.000 0.00 0.00 35.48 3.42
718 721 2.185004 AAGCGGAAAGAAGCAAGCTA 57.815 45.000 0.00 0.00 34.24 3.32
719 722 1.000938 CAAAGCGGAAAGAAGCAAGCT 60.001 47.619 0.00 0.00 36.40 3.74
720 723 1.412387 CAAAGCGGAAAGAAGCAAGC 58.588 50.000 0.00 0.00 35.48 4.01
721 724 1.412387 GCAAAGCGGAAAGAAGCAAG 58.588 50.000 0.00 0.00 35.48 4.01
722 725 3.568093 GCAAAGCGGAAAGAAGCAA 57.432 47.368 0.00 0.00 35.48 3.91
744 747 5.342433 CAGTCAGCACACATTCAAGAAAAA 58.658 37.500 0.00 0.00 0.00 1.94
745 748 4.734402 GCAGTCAGCACACATTCAAGAAAA 60.734 41.667 0.00 0.00 44.79 2.29
746 749 3.243168 GCAGTCAGCACACATTCAAGAAA 60.243 43.478 0.00 0.00 44.79 2.52
747 750 2.291465 GCAGTCAGCACACATTCAAGAA 59.709 45.455 0.00 0.00 44.79 2.52
748 751 1.875514 GCAGTCAGCACACATTCAAGA 59.124 47.619 0.00 0.00 44.79 3.02
749 752 2.327081 GCAGTCAGCACACATTCAAG 57.673 50.000 0.00 0.00 44.79 3.02
760 763 1.467734 CAAAGATCACCAGCAGTCAGC 59.532 52.381 0.00 0.00 46.19 4.26
761 764 2.082231 CCAAAGATCACCAGCAGTCAG 58.918 52.381 0.00 0.00 0.00 3.51
762 765 1.699083 TCCAAAGATCACCAGCAGTCA 59.301 47.619 0.00 0.00 0.00 3.41
763 766 2.479566 TCCAAAGATCACCAGCAGTC 57.520 50.000 0.00 0.00 0.00 3.51
764 767 2.107204 AGTTCCAAAGATCACCAGCAGT 59.893 45.455 0.00 0.00 0.00 4.40
765 768 2.787994 AGTTCCAAAGATCACCAGCAG 58.212 47.619 0.00 0.00 0.00 4.24
766 769 2.957402 AGTTCCAAAGATCACCAGCA 57.043 45.000 0.00 0.00 0.00 4.41
767 770 7.391148 TTTATAAGTTCCAAAGATCACCAGC 57.609 36.000 0.00 0.00 0.00 4.85
768 771 9.014297 AGTTTTATAAGTTCCAAAGATCACCAG 57.986 33.333 0.00 0.00 0.00 4.00
769 772 8.934023 AGTTTTATAAGTTCCAAAGATCACCA 57.066 30.769 0.00 0.00 0.00 4.17
775 778 9.681062 CCAGGATAGTTTTATAAGTTCCAAAGA 57.319 33.333 0.00 0.00 0.00 2.52
776 779 8.903820 CCCAGGATAGTTTTATAAGTTCCAAAG 58.096 37.037 0.00 0.00 0.00 2.77
777 780 8.616598 TCCCAGGATAGTTTTATAAGTTCCAAA 58.383 33.333 0.00 0.00 0.00 3.28
778 781 8.165267 TCCCAGGATAGTTTTATAAGTTCCAA 57.835 34.615 0.00 0.00 0.00 3.53
779 782 7.758820 TCCCAGGATAGTTTTATAAGTTCCA 57.241 36.000 0.00 0.00 0.00 3.53
789 792 8.759782 CCTATCGTTATATCCCAGGATAGTTTT 58.240 37.037 11.86 0.00 40.01 2.43
790 793 7.899709 ACCTATCGTTATATCCCAGGATAGTTT 59.100 37.037 11.86 0.00 40.01 2.66
791 794 7.420029 ACCTATCGTTATATCCCAGGATAGTT 58.580 38.462 11.86 0.00 40.01 2.24
792 795 6.982899 ACCTATCGTTATATCCCAGGATAGT 58.017 40.000 11.86 3.93 40.01 2.12
793 796 7.560262 TCAACCTATCGTTATATCCCAGGATAG 59.440 40.741 11.86 9.91 35.09 2.08
794 797 7.415908 TCAACCTATCGTTATATCCCAGGATA 58.584 38.462 8.82 8.82 35.63 2.59
795 798 6.261435 TCAACCTATCGTTATATCCCAGGAT 58.739 40.000 4.27 4.27 34.37 3.24
796 799 5.647230 TCAACCTATCGTTATATCCCAGGA 58.353 41.667 0.00 0.00 31.77 3.86
797 800 5.995565 TCAACCTATCGTTATATCCCAGG 57.004 43.478 0.00 0.00 31.77 4.45
798 801 5.812642 GCATCAACCTATCGTTATATCCCAG 59.187 44.000 0.00 0.00 31.77 4.45
799 802 5.247337 TGCATCAACCTATCGTTATATCCCA 59.753 40.000 0.00 0.00 31.77 4.37
800 803 5.730550 TGCATCAACCTATCGTTATATCCC 58.269 41.667 0.00 0.00 31.77 3.85
801 804 6.818644 ACATGCATCAACCTATCGTTATATCC 59.181 38.462 0.00 0.00 31.77 2.59
802 805 7.761704 AGACATGCATCAACCTATCGTTATATC 59.238 37.037 0.00 0.00 31.77 1.63
803 806 7.547019 CAGACATGCATCAACCTATCGTTATAT 59.453 37.037 0.00 0.00 31.77 0.86
804 807 6.868339 CAGACATGCATCAACCTATCGTTATA 59.132 38.462 0.00 0.00 31.77 0.98
805 808 5.698089 CAGACATGCATCAACCTATCGTTAT 59.302 40.000 0.00 0.00 31.77 1.89
806 809 5.049828 CAGACATGCATCAACCTATCGTTA 58.950 41.667 0.00 0.00 31.77 3.18
807 810 3.873361 CAGACATGCATCAACCTATCGTT 59.127 43.478 0.00 0.00 33.90 3.85
808 811 3.118629 ACAGACATGCATCAACCTATCGT 60.119 43.478 0.00 0.00 0.00 3.73
809 812 3.461061 ACAGACATGCATCAACCTATCG 58.539 45.455 0.00 0.00 0.00 2.92
810 813 6.484643 ACATAACAGACATGCATCAACCTATC 59.515 38.462 0.00 0.00 0.00 2.08
811 814 6.359804 ACATAACAGACATGCATCAACCTAT 58.640 36.000 0.00 0.00 0.00 2.57
812 815 5.744171 ACATAACAGACATGCATCAACCTA 58.256 37.500 0.00 0.00 0.00 3.08
813 816 4.592942 ACATAACAGACATGCATCAACCT 58.407 39.130 0.00 0.00 0.00 3.50
814 817 4.970662 ACATAACAGACATGCATCAACC 57.029 40.909 0.00 0.00 0.00 3.77
815 818 5.702865 ACAACATAACAGACATGCATCAAC 58.297 37.500 0.00 0.00 0.00 3.18
816 819 5.706833 AGACAACATAACAGACATGCATCAA 59.293 36.000 0.00 0.00 0.00 2.57
817 820 5.247862 AGACAACATAACAGACATGCATCA 58.752 37.500 0.00 0.00 0.00 3.07
818 821 5.808042 AGACAACATAACAGACATGCATC 57.192 39.130 0.00 0.00 0.00 3.91
819 822 5.620654 GCAAGACAACATAACAGACATGCAT 60.621 40.000 0.00 0.00 0.00 3.96
820 823 4.320421 GCAAGACAACATAACAGACATGCA 60.320 41.667 0.00 0.00 0.00 3.96
821 824 4.161333 GCAAGACAACATAACAGACATGC 58.839 43.478 0.00 0.00 0.00 4.06
822 825 4.216042 TGGCAAGACAACATAACAGACATG 59.784 41.667 0.00 0.00 0.00 3.21
823 826 4.397420 TGGCAAGACAACATAACAGACAT 58.603 39.130 0.00 0.00 0.00 3.06
824 827 3.814625 TGGCAAGACAACATAACAGACA 58.185 40.909 0.00 0.00 0.00 3.41
825 828 4.065088 TCTGGCAAGACAACATAACAGAC 58.935 43.478 0.00 0.00 0.00 3.51
826 829 4.350368 TCTGGCAAGACAACATAACAGA 57.650 40.909 0.00 0.00 0.00 3.41
827 830 4.201753 CGATCTGGCAAGACAACATAACAG 60.202 45.833 0.00 0.00 34.48 3.16
828 831 3.684305 CGATCTGGCAAGACAACATAACA 59.316 43.478 0.00 0.00 34.48 2.41
829 832 3.932710 TCGATCTGGCAAGACAACATAAC 59.067 43.478 0.00 0.00 34.48 1.89
830 833 3.932710 GTCGATCTGGCAAGACAACATAA 59.067 43.478 0.00 0.00 34.48 1.90
831 834 3.056179 TGTCGATCTGGCAAGACAACATA 60.056 43.478 0.00 0.00 40.19 2.29
832 835 2.289631 TGTCGATCTGGCAAGACAACAT 60.290 45.455 0.00 0.00 40.19 2.71
833 836 1.069978 TGTCGATCTGGCAAGACAACA 59.930 47.619 0.00 0.00 40.19 3.33
834 837 1.728971 CTGTCGATCTGGCAAGACAAC 59.271 52.381 13.17 0.00 42.17 3.32
835 838 1.618343 TCTGTCGATCTGGCAAGACAA 59.382 47.619 13.17 5.28 42.17 3.18
836 839 1.256812 TCTGTCGATCTGGCAAGACA 58.743 50.000 0.00 12.09 40.77 3.41
837 840 2.593346 ATCTGTCGATCTGGCAAGAC 57.407 50.000 0.00 0.00 34.48 3.01
838 841 4.625028 CATAATCTGTCGATCTGGCAAGA 58.375 43.478 0.00 0.00 36.69 3.02
839 842 3.186001 GCATAATCTGTCGATCTGGCAAG 59.814 47.826 0.00 0.00 0.00 4.01
840 843 3.133691 GCATAATCTGTCGATCTGGCAA 58.866 45.455 0.00 0.00 0.00 4.52
841 844 2.102925 TGCATAATCTGTCGATCTGGCA 59.897 45.455 0.00 0.00 0.00 4.92
842 845 2.735663 CTGCATAATCTGTCGATCTGGC 59.264 50.000 0.00 0.00 0.00 4.85
843 846 4.248691 TCTGCATAATCTGTCGATCTGG 57.751 45.455 0.00 0.00 0.00 3.86
844 847 4.685165 CCTTCTGCATAATCTGTCGATCTG 59.315 45.833 0.00 0.00 0.00 2.90
845 848 4.798924 GCCTTCTGCATAATCTGTCGATCT 60.799 45.833 0.00 0.00 40.77 2.75
846 849 3.431572 GCCTTCTGCATAATCTGTCGATC 59.568 47.826 0.00 0.00 40.77 3.69
847 850 3.397482 GCCTTCTGCATAATCTGTCGAT 58.603 45.455 0.00 0.00 40.77 3.59
848 851 2.826428 GCCTTCTGCATAATCTGTCGA 58.174 47.619 0.00 0.00 40.77 4.20
857 860 7.679620 GCTGATTCAGTTATGCCTTCTGCATA 61.680 42.308 14.90 2.89 45.33 3.14
859 862 5.694229 GCTGATTCAGTTATGCCTTCTGCA 61.694 45.833 14.90 0.00 43.58 4.41
860 863 3.243002 GCTGATTCAGTTATGCCTTCTGC 60.243 47.826 14.90 0.00 35.51 4.26
861 864 3.943381 TGCTGATTCAGTTATGCCTTCTG 59.057 43.478 14.90 0.00 33.43 3.02
862 865 4.226427 TGCTGATTCAGTTATGCCTTCT 57.774 40.909 14.90 0.00 33.43 2.85
863 866 5.528690 TGTATGCTGATTCAGTTATGCCTTC 59.471 40.000 14.90 0.00 33.43 3.46
864 867 5.439721 TGTATGCTGATTCAGTTATGCCTT 58.560 37.500 14.90 0.00 33.43 4.35
865 868 5.039920 TGTATGCTGATTCAGTTATGCCT 57.960 39.130 14.90 0.00 33.43 4.75
866 869 5.471116 TCATGTATGCTGATTCAGTTATGCC 59.529 40.000 14.90 6.58 33.43 4.40
867 870 6.426025 TCTCATGTATGCTGATTCAGTTATGC 59.574 38.462 14.90 12.79 33.43 3.14
868 871 7.095313 GGTCTCATGTATGCTGATTCAGTTATG 60.095 40.741 14.90 11.56 33.43 1.90
869 872 6.933521 GGTCTCATGTATGCTGATTCAGTTAT 59.066 38.462 14.90 11.77 33.43 1.89
870 873 6.283694 GGTCTCATGTATGCTGATTCAGTTA 58.716 40.000 14.90 5.52 33.43 2.24
871 874 5.121811 GGTCTCATGTATGCTGATTCAGTT 58.878 41.667 14.90 6.10 33.43 3.16
872 875 4.444022 GGGTCTCATGTATGCTGATTCAGT 60.444 45.833 14.90 0.00 33.43 3.41
873 876 4.063689 GGGTCTCATGTATGCTGATTCAG 58.936 47.826 9.40 9.40 34.12 3.02
874 877 3.455543 TGGGTCTCATGTATGCTGATTCA 59.544 43.478 0.00 0.00 0.00 2.57
875 878 4.077300 TGGGTCTCATGTATGCTGATTC 57.923 45.455 0.00 0.00 0.00 2.52
876 879 4.508551 TTGGGTCTCATGTATGCTGATT 57.491 40.909 0.00 0.00 0.00 2.57
877 880 4.350225 AGATTGGGTCTCATGTATGCTGAT 59.650 41.667 0.00 0.00 28.45 2.90
878 881 3.713248 AGATTGGGTCTCATGTATGCTGA 59.287 43.478 0.00 0.00 28.45 4.26
879 882 3.813724 CAGATTGGGTCTCATGTATGCTG 59.186 47.826 0.00 0.00 34.00 4.41
880 883 3.457380 ACAGATTGGGTCTCATGTATGCT 59.543 43.478 0.00 0.00 34.00 3.79
881 884 3.813443 ACAGATTGGGTCTCATGTATGC 58.187 45.455 0.00 0.00 34.00 3.14
882 885 5.430886 TCAACAGATTGGGTCTCATGTATG 58.569 41.667 0.00 0.00 36.39 2.39
883 886 5.678583 CTCAACAGATTGGGTCTCATGTAT 58.321 41.667 0.00 0.00 36.39 2.29
884 887 5.089970 CTCAACAGATTGGGTCTCATGTA 57.910 43.478 0.00 0.00 36.39 2.29
885 888 3.947868 CTCAACAGATTGGGTCTCATGT 58.052 45.455 0.00 0.00 36.39 3.21
893 896 2.189594 TGAGCACTCAACAGATTGGG 57.810 50.000 0.00 0.00 42.59 4.12
894 897 4.940046 AGTAATGAGCACTCAACAGATTGG 59.060 41.667 4.14 0.00 43.58 3.16
895 898 6.148315 TGAAGTAATGAGCACTCAACAGATTG 59.852 38.462 4.14 0.00 43.58 2.67
896 899 6.233434 TGAAGTAATGAGCACTCAACAGATT 58.767 36.000 4.14 0.00 43.58 2.40
897 900 5.798132 TGAAGTAATGAGCACTCAACAGAT 58.202 37.500 4.14 0.00 43.58 2.90
898 901 5.213891 TGAAGTAATGAGCACTCAACAGA 57.786 39.130 4.14 0.00 43.58 3.41
899 902 5.929697 TTGAAGTAATGAGCACTCAACAG 57.070 39.130 4.14 0.00 43.58 3.16
900 903 6.294120 CCAATTGAAGTAATGAGCACTCAACA 60.294 38.462 7.12 0.00 43.58 3.33
901 904 6.088824 CCAATTGAAGTAATGAGCACTCAAC 58.911 40.000 7.12 0.00 43.58 3.18
902 905 5.769662 ACCAATTGAAGTAATGAGCACTCAA 59.230 36.000 7.12 0.00 43.58 3.02
903 906 5.316167 ACCAATTGAAGTAATGAGCACTCA 58.684 37.500 7.12 2.25 44.59 3.41
904 907 5.886960 ACCAATTGAAGTAATGAGCACTC 57.113 39.130 7.12 0.00 0.00 3.51
905 908 6.655078 AAACCAATTGAAGTAATGAGCACT 57.345 33.333 7.12 0.00 0.00 4.40
906 909 8.986477 ATTAAACCAATTGAAGTAATGAGCAC 57.014 30.769 7.12 0.00 0.00 4.40
907 910 9.995003 AAATTAAACCAATTGAAGTAATGAGCA 57.005 25.926 7.12 0.00 36.93 4.26
914 917 9.717942 CCCATTGAAATTAAACCAATTGAAGTA 57.282 29.630 7.12 0.00 36.93 2.24
915 918 8.435982 TCCCATTGAAATTAAACCAATTGAAGT 58.564 29.630 7.12 0.00 36.93 3.01
916 919 8.845413 TCCCATTGAAATTAAACCAATTGAAG 57.155 30.769 7.12 0.00 36.93 3.02
917 920 9.632638 TTTCCCATTGAAATTAAACCAATTGAA 57.367 25.926 7.12 0.00 38.04 2.69
918 921 9.061435 GTTTCCCATTGAAATTAAACCAATTGA 57.939 29.630 7.12 0.00 44.44 2.57
919 922 8.014517 CGTTTCCCATTGAAATTAAACCAATTG 58.985 33.333 0.00 0.00 44.44 2.32
920 923 7.717436 ACGTTTCCCATTGAAATTAAACCAATT 59.283 29.630 0.00 0.00 44.44 2.32
921 924 7.220740 ACGTTTCCCATTGAAATTAAACCAAT 58.779 30.769 0.00 0.00 44.44 3.16
922 925 6.583562 ACGTTTCCCATTGAAATTAAACCAA 58.416 32.000 0.00 0.00 44.44 3.67
923 926 6.163135 ACGTTTCCCATTGAAATTAAACCA 57.837 33.333 0.00 0.00 44.44 3.67
924 927 7.485418 AAACGTTTCCCATTGAAATTAAACC 57.515 32.000 7.96 0.00 44.44 3.27
2429 2818 5.011738 TGTCTTCGGAAACTAGGAGTCAATT 59.988 40.000 0.00 0.00 0.00 2.32
2431 2820 3.893200 TGTCTTCGGAAACTAGGAGTCAA 59.107 43.478 0.00 0.00 0.00 3.18
2433 2822 3.757493 TCTGTCTTCGGAAACTAGGAGTC 59.243 47.826 0.00 0.00 0.00 3.36
2434 2823 3.764218 TCTGTCTTCGGAAACTAGGAGT 58.236 45.455 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.