Multiple sequence alignment - TraesCS1A01G127800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G127800 chr1A 100.000 2536 0 0 1 2536 155145069 155142534 0.000000e+00 4684.0
1 TraesCS1A01G127800 chr5A 96.706 1973 61 3 567 2536 331888429 331886458 0.000000e+00 3280.0
2 TraesCS1A01G127800 chr5A 83.252 412 32 11 1 376 573056023 573055613 6.720000e-91 344.0
3 TraesCS1A01G127800 chr2B 86.829 410 25 5 1 382 110469120 110468712 5.010000e-117 431.0
4 TraesCS1A01G127800 chr2B 82.432 148 25 1 231 378 545249552 545249698 7.360000e-26 128.0
5 TraesCS1A01G127800 chr2B 81.119 143 25 2 232 374 600091953 600092093 2.060000e-21 113.0
6 TraesCS1A01G127800 chr3B 86.783 401 28 4 2 377 682918454 682918854 8.390000e-115 424.0
7 TraesCS1A01G127800 chr2A 85.610 410 28 5 1 382 121136616 121137022 3.930000e-108 401.0
8 TraesCS1A01G127800 chr2A 85.427 398 34 5 4 377 736909923 736909526 2.370000e-105 392.0
9 TraesCS1A01G127800 chr2A 89.836 305 31 0 568 872 771550634 771550330 2.370000e-105 392.0
10 TraesCS1A01G127800 chr6B 90.426 282 27 0 570 851 567602840 567602559 3.080000e-99 372.0
11 TraesCS1A01G127800 chr2D 82.494 417 33 10 1 380 72445205 72445618 1.880000e-86 329.0
12 TraesCS1A01G127800 chr2D 86.022 93 10 2 476 566 277053704 277053613 2.080000e-16 97.1
13 TraesCS1A01G127800 chr2D 82.796 93 13 2 476 566 277023931 277024022 2.090000e-11 80.5
14 TraesCS1A01G127800 chr1D 96.825 189 6 0 378 566 137630183 137630371 1.460000e-82 316.0
15 TraesCS1A01G127800 chr1B 95.767 189 7 1 378 566 209641961 209642148 1.140000e-78 303.0
16 TraesCS1A01G127800 chr1B 85.039 127 19 0 251 377 38917122 38916996 2.050000e-26 130.0
17 TraesCS1A01G127800 chr1B 82.353 153 21 5 231 380 60061168 60061317 7.360000e-26 128.0
18 TraesCS1A01G127800 chr3D 85.714 133 19 0 250 382 570350053 570349921 9.460000e-30 141.0
19 TraesCS1A01G127800 chr7A 89.333 75 6 2 476 548 2871288 2871362 2.690000e-15 93.5
20 TraesCS1A01G127800 chr3A 89.333 75 6 2 476 548 716469065 716468991 2.690000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G127800 chr1A 155142534 155145069 2535 True 4684 4684 100.000 1 2536 1 chr1A.!!$R1 2535
1 TraesCS1A01G127800 chr5A 331886458 331888429 1971 True 3280 3280 96.706 567 2536 1 chr5A.!!$R1 1969

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
228 229 0.034670 GCCTTCCAACTCTCAGCCAT 60.035 55.0 0.0 0.0 0.0 4.40 F
246 247 0.038166 ATTGTGGGCTGGACGTTCAT 59.962 50.0 0.0 0.0 0.0 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1104 1105 0.672401 CGTTCGGCCCTTCTTTGCTA 60.672 55.0 0.0 0.0 0.00 3.49 R
2006 2009 0.755686 GAAGGAGATGCCGAGATGGT 59.244 55.0 0.0 0.0 43.43 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.299352 GCGATGCAATACATAGAGTTCG 57.701 45.455 0.00 0.00 39.84 3.95
22 23 3.981416 GCGATGCAATACATAGAGTTCGA 59.019 43.478 0.00 0.00 39.84 3.71
23 24 4.143514 GCGATGCAATACATAGAGTTCGAC 60.144 45.833 0.00 0.00 39.84 4.20
24 25 4.383052 CGATGCAATACATAGAGTTCGACC 59.617 45.833 0.00 0.00 39.84 4.79
25 26 5.533482 GATGCAATACATAGAGTTCGACCT 58.467 41.667 0.00 0.00 39.84 3.85
26 27 4.933330 TGCAATACATAGAGTTCGACCTC 58.067 43.478 0.97 0.97 0.00 3.85
27 28 4.401202 TGCAATACATAGAGTTCGACCTCA 59.599 41.667 12.87 0.00 33.75 3.86
28 29 5.105513 TGCAATACATAGAGTTCGACCTCAA 60.106 40.000 12.87 0.00 33.75 3.02
29 30 5.986135 GCAATACATAGAGTTCGACCTCAAT 59.014 40.000 12.87 0.00 33.75 2.57
30 31 7.145985 GCAATACATAGAGTTCGACCTCAATA 58.854 38.462 12.87 0.00 33.75 1.90
31 32 7.815068 GCAATACATAGAGTTCGACCTCAATAT 59.185 37.037 12.87 0.00 33.75 1.28
32 33 9.698309 CAATACATAGAGTTCGACCTCAATATT 57.302 33.333 12.87 7.31 33.75 1.28
36 37 8.915036 ACATAGAGTTCGACCTCAATATTTACT 58.085 33.333 12.87 0.00 33.75 2.24
37 38 9.186323 CATAGAGTTCGACCTCAATATTTACTG 57.814 37.037 12.87 0.00 33.75 2.74
38 39 7.406031 AGAGTTCGACCTCAATATTTACTGA 57.594 36.000 12.87 0.00 33.75 3.41
39 40 7.484975 AGAGTTCGACCTCAATATTTACTGAG 58.515 38.462 12.87 0.00 39.06 3.35
40 41 6.043411 AGTTCGACCTCAATATTTACTGAGC 58.957 40.000 0.00 0.00 38.19 4.26
41 42 5.854010 TCGACCTCAATATTTACTGAGCT 57.146 39.130 0.00 0.00 38.19 4.09
42 43 6.954487 TCGACCTCAATATTTACTGAGCTA 57.046 37.500 0.00 0.00 38.19 3.32
43 44 7.526142 TCGACCTCAATATTTACTGAGCTAT 57.474 36.000 0.00 0.00 38.19 2.97
44 45 7.371159 TCGACCTCAATATTTACTGAGCTATG 58.629 38.462 0.00 0.00 38.19 2.23
45 46 7.014326 TCGACCTCAATATTTACTGAGCTATGT 59.986 37.037 0.00 0.00 38.19 2.29
46 47 8.297426 CGACCTCAATATTTACTGAGCTATGTA 58.703 37.037 0.00 0.00 38.19 2.29
48 49 9.935241 ACCTCAATATTTACTGAGCTATGTATG 57.065 33.333 0.00 0.00 38.19 2.39
49 50 9.376075 CCTCAATATTTACTGAGCTATGTATGG 57.624 37.037 0.00 0.00 38.19 2.74
50 51 8.777865 TCAATATTTACTGAGCTATGTATGGC 57.222 34.615 0.00 0.00 34.12 4.40
51 52 8.374743 TCAATATTTACTGAGCTATGTATGGCA 58.625 33.333 3.06 0.00 36.66 4.92
52 53 8.446273 CAATATTTACTGAGCTATGTATGGCAC 58.554 37.037 3.06 0.00 36.66 5.01
53 54 2.515926 ACTGAGCTATGTATGGCACG 57.484 50.000 3.06 0.00 36.66 5.34
54 55 1.069204 ACTGAGCTATGTATGGCACGG 59.931 52.381 3.06 4.26 37.29 4.94
55 56 1.069204 CTGAGCTATGTATGGCACGGT 59.931 52.381 3.06 0.00 36.66 4.83
56 57 1.202521 TGAGCTATGTATGGCACGGTG 60.203 52.381 3.15 3.15 36.66 4.94
57 58 0.106708 AGCTATGTATGGCACGGTGG 59.893 55.000 10.60 0.00 36.66 4.61
58 59 0.105964 GCTATGTATGGCACGGTGGA 59.894 55.000 10.60 0.00 34.10 4.02
59 60 1.865865 CTATGTATGGCACGGTGGAC 58.134 55.000 10.60 0.00 0.00 4.02
60 61 1.138069 CTATGTATGGCACGGTGGACA 59.862 52.381 10.60 0.00 0.00 4.02
61 62 0.326595 ATGTATGGCACGGTGGACAA 59.673 50.000 10.60 0.00 0.00 3.18
62 63 0.604243 TGTATGGCACGGTGGACAAC 60.604 55.000 10.60 2.20 0.00 3.32
63 64 1.003112 TATGGCACGGTGGACAACC 60.003 57.895 10.60 2.54 46.60 3.77
70 71 3.836151 GGTGGACAACCTTTGCGT 58.164 55.556 0.00 0.00 46.55 5.24
71 72 3.009612 GGTGGACAACCTTTGCGTA 57.990 52.632 0.00 0.00 46.55 4.42
72 73 0.589708 GGTGGACAACCTTTGCGTAC 59.410 55.000 0.00 0.00 46.55 3.67
73 74 1.301423 GTGGACAACCTTTGCGTACA 58.699 50.000 0.00 0.00 37.04 2.90
74 75 1.671845 GTGGACAACCTTTGCGTACAA 59.328 47.619 0.00 0.00 37.04 2.41
75 76 2.292292 GTGGACAACCTTTGCGTACAAT 59.708 45.455 0.00 0.00 35.21 2.71
76 77 2.292016 TGGACAACCTTTGCGTACAATG 59.708 45.455 0.00 0.00 35.21 2.82
77 78 2.315901 GACAACCTTTGCGTACAATGC 58.684 47.619 0.00 0.00 35.21 3.56
78 79 1.678627 ACAACCTTTGCGTACAATGCA 59.321 42.857 0.00 0.00 38.54 3.96
85 86 2.898181 TGCGTACAATGCAATCTGTG 57.102 45.000 9.12 0.00 37.15 3.66
86 87 2.421619 TGCGTACAATGCAATCTGTGA 58.578 42.857 9.12 0.00 37.15 3.58
87 88 2.159430 TGCGTACAATGCAATCTGTGAC 59.841 45.455 9.12 4.21 37.15 3.67
88 89 2.159430 GCGTACAATGCAATCTGTGACA 59.841 45.455 9.12 0.00 0.00 3.58
89 90 3.364864 GCGTACAATGCAATCTGTGACAA 60.365 43.478 9.12 0.00 0.00 3.18
90 91 4.672542 GCGTACAATGCAATCTGTGACAAT 60.673 41.667 9.12 0.00 0.00 2.71
91 92 4.789629 CGTACAATGCAATCTGTGACAATG 59.210 41.667 9.12 0.00 0.00 2.82
92 93 5.390779 CGTACAATGCAATCTGTGACAATGA 60.391 40.000 9.12 0.00 0.00 2.57
93 94 5.055642 ACAATGCAATCTGTGACAATGAG 57.944 39.130 0.00 0.00 0.00 2.90
94 95 4.082408 ACAATGCAATCTGTGACAATGAGG 60.082 41.667 0.00 0.00 0.00 3.86
95 96 2.439409 TGCAATCTGTGACAATGAGGG 58.561 47.619 0.00 0.00 0.00 4.30
96 97 2.224843 TGCAATCTGTGACAATGAGGGT 60.225 45.455 0.00 0.00 0.00 4.34
97 98 2.821969 GCAATCTGTGACAATGAGGGTT 59.178 45.455 0.00 0.00 0.00 4.11
98 99 3.119708 GCAATCTGTGACAATGAGGGTTC 60.120 47.826 0.00 0.00 0.00 3.62
99 100 2.455674 TCTGTGACAATGAGGGTTCG 57.544 50.000 0.00 0.00 0.00 3.95
100 101 1.967779 TCTGTGACAATGAGGGTTCGA 59.032 47.619 0.00 0.00 0.00 3.71
101 102 2.567169 TCTGTGACAATGAGGGTTCGAT 59.433 45.455 0.00 0.00 0.00 3.59
102 103 2.932614 CTGTGACAATGAGGGTTCGATC 59.067 50.000 0.00 0.00 0.00 3.69
103 104 2.280628 GTGACAATGAGGGTTCGATCC 58.719 52.381 3.76 3.76 0.00 3.36
104 105 2.093447 GTGACAATGAGGGTTCGATCCT 60.093 50.000 12.19 9.78 37.33 3.24
105 106 2.093500 TGACAATGAGGGTTCGATCCTG 60.093 50.000 12.19 5.03 34.21 3.86
106 107 1.909302 ACAATGAGGGTTCGATCCTGT 59.091 47.619 12.19 5.63 34.21 4.00
107 108 3.104512 ACAATGAGGGTTCGATCCTGTA 58.895 45.455 12.19 2.70 34.21 2.74
108 109 3.711704 ACAATGAGGGTTCGATCCTGTAT 59.288 43.478 12.19 4.67 34.21 2.29
109 110 4.202264 ACAATGAGGGTTCGATCCTGTATC 60.202 45.833 12.19 6.57 34.21 2.24
110 111 3.026707 TGAGGGTTCGATCCTGTATCA 57.973 47.619 12.19 8.73 34.21 2.15
111 112 2.693591 TGAGGGTTCGATCCTGTATCAC 59.306 50.000 12.19 0.00 34.21 3.06
112 113 2.693591 GAGGGTTCGATCCTGTATCACA 59.306 50.000 12.19 0.00 34.21 3.58
113 114 3.309296 AGGGTTCGATCCTGTATCACAT 58.691 45.455 12.19 0.00 33.87 3.21
114 115 3.711704 AGGGTTCGATCCTGTATCACATT 59.288 43.478 12.19 0.00 33.87 2.71
115 116 4.164221 AGGGTTCGATCCTGTATCACATTT 59.836 41.667 12.19 0.00 33.87 2.32
116 117 4.881850 GGGTTCGATCCTGTATCACATTTT 59.118 41.667 12.19 0.00 33.87 1.82
117 118 5.357032 GGGTTCGATCCTGTATCACATTTTT 59.643 40.000 12.19 0.00 33.87 1.94
152 153 9.563748 TCTAATTCATGAGATTTACATGCATGA 57.436 29.630 32.75 11.53 43.03 3.07
153 154 9.608617 CTAATTCATGAGATTTACATGCATGAC 57.391 33.333 32.75 16.52 43.34 3.06
154 155 7.818997 ATTCATGAGATTTACATGCATGACT 57.181 32.000 32.75 20.33 43.34 3.41
155 156 8.913487 ATTCATGAGATTTACATGCATGACTA 57.087 30.769 32.75 13.15 43.34 2.59
156 157 8.735692 TTCATGAGATTTACATGCATGACTAA 57.264 30.769 32.75 21.04 43.34 2.24
157 158 8.735692 TCATGAGATTTACATGCATGACTAAA 57.264 30.769 32.75 24.78 43.03 1.85
158 159 9.176460 TCATGAGATTTACATGCATGACTAAAA 57.824 29.630 32.75 23.16 43.03 1.52
159 160 9.791820 CATGAGATTTACATGCATGACTAAAAA 57.208 29.630 32.75 21.05 38.82 1.94
183 184 8.499288 AAAAATATGAGGGGGTCTTGTAAAAA 57.501 30.769 0.00 0.00 0.00 1.94
199 200 2.854522 AAAAATCCTCACGCTCGGG 58.145 52.632 0.00 0.00 0.00 5.14
200 201 1.305930 AAAAATCCTCACGCTCGGGC 61.306 55.000 0.00 0.00 0.00 6.13
201 202 3.682292 AAATCCTCACGCTCGGGCC 62.682 63.158 0.00 0.00 34.44 5.80
217 218 4.659172 CCACCCAGCGCCTTCCAA 62.659 66.667 2.29 0.00 0.00 3.53
218 219 3.365265 CACCCAGCGCCTTCCAAC 61.365 66.667 2.29 0.00 0.00 3.77
219 220 3.570212 ACCCAGCGCCTTCCAACT 61.570 61.111 2.29 0.00 0.00 3.16
220 221 2.747855 CCCAGCGCCTTCCAACTC 60.748 66.667 2.29 0.00 0.00 3.01
221 222 2.348998 CCAGCGCCTTCCAACTCT 59.651 61.111 2.29 0.00 0.00 3.24
222 223 1.743252 CCAGCGCCTTCCAACTCTC 60.743 63.158 2.29 0.00 0.00 3.20
223 224 1.004560 CAGCGCCTTCCAACTCTCA 60.005 57.895 2.29 0.00 0.00 3.27
224 225 1.018226 CAGCGCCTTCCAACTCTCAG 61.018 60.000 2.29 0.00 0.00 3.35
225 226 2.394563 GCGCCTTCCAACTCTCAGC 61.395 63.158 0.00 0.00 0.00 4.26
226 227 1.743252 CGCCTTCCAACTCTCAGCC 60.743 63.158 0.00 0.00 0.00 4.85
227 228 1.376466 GCCTTCCAACTCTCAGCCA 59.624 57.895 0.00 0.00 0.00 4.75
228 229 0.034670 GCCTTCCAACTCTCAGCCAT 60.035 55.000 0.00 0.00 0.00 4.40
229 230 1.615384 GCCTTCCAACTCTCAGCCATT 60.615 52.381 0.00 0.00 0.00 3.16
230 231 2.089980 CCTTCCAACTCTCAGCCATTG 58.910 52.381 0.00 0.00 0.00 2.82
231 232 2.553904 CCTTCCAACTCTCAGCCATTGT 60.554 50.000 0.00 0.00 0.00 2.71
232 233 2.189594 TCCAACTCTCAGCCATTGTG 57.810 50.000 0.00 0.00 0.00 3.33
233 234 1.171308 CCAACTCTCAGCCATTGTGG 58.829 55.000 0.00 0.00 41.55 4.17
234 235 1.171308 CAACTCTCAGCCATTGTGGG 58.829 55.000 0.00 0.00 38.19 4.61
242 243 2.034066 CCATTGTGGGCTGGACGT 59.966 61.111 0.00 0.00 34.24 4.34
243 244 1.603455 CCATTGTGGGCTGGACGTT 60.603 57.895 0.00 0.00 34.24 3.99
244 245 1.586154 CCATTGTGGGCTGGACGTTC 61.586 60.000 0.00 0.00 34.24 3.95
245 246 0.888736 CATTGTGGGCTGGACGTTCA 60.889 55.000 0.00 0.00 0.00 3.18
246 247 0.038166 ATTGTGGGCTGGACGTTCAT 59.962 50.000 0.00 0.00 0.00 2.57
247 248 0.179004 TTGTGGGCTGGACGTTCATT 60.179 50.000 0.00 0.00 0.00 2.57
248 249 0.605319 TGTGGGCTGGACGTTCATTC 60.605 55.000 0.00 0.00 0.00 2.67
249 250 1.375396 TGGGCTGGACGTTCATTCG 60.375 57.895 0.00 0.00 0.00 3.34
250 251 2.106683 GGGCTGGACGTTCATTCGG 61.107 63.158 0.00 0.00 34.94 4.30
251 252 1.079405 GGCTGGACGTTCATTCGGA 60.079 57.895 0.00 0.00 34.94 4.55
252 253 0.462047 GGCTGGACGTTCATTCGGAT 60.462 55.000 0.00 0.00 34.94 4.18
253 254 1.202486 GGCTGGACGTTCATTCGGATA 60.202 52.381 0.00 0.00 34.94 2.59
254 255 1.859080 GCTGGACGTTCATTCGGATAC 59.141 52.381 0.00 0.00 34.94 2.24
267 268 1.371558 GGATACGGATGGAGGCACC 59.628 63.158 0.00 0.00 39.54 5.01
278 279 3.401033 TGGAGGCACCATATTCGTATG 57.599 47.619 0.00 0.00 44.64 2.39
279 280 2.703536 TGGAGGCACCATATTCGTATGT 59.296 45.455 0.00 0.00 44.64 2.29
280 281 3.067106 GGAGGCACCATATTCGTATGTG 58.933 50.000 0.00 0.00 38.79 3.21
281 282 2.480419 GAGGCACCATATTCGTATGTGC 59.520 50.000 7.23 7.23 35.62 4.57
282 283 1.194547 GGCACCATATTCGTATGTGCG 59.805 52.381 8.98 0.00 36.39 5.34
283 284 2.131972 GCACCATATTCGTATGTGCGA 58.868 47.619 0.00 0.00 39.28 5.10
291 292 3.781341 TTCGTATGTGCGAACAAGTTC 57.219 42.857 0.00 2.89 44.55 3.01
301 302 1.583054 GAACAAGTTCGAGCACCACT 58.417 50.000 1.01 0.00 0.00 4.00
302 303 1.940613 GAACAAGTTCGAGCACCACTT 59.059 47.619 1.01 0.00 0.00 3.16
303 304 2.038387 ACAAGTTCGAGCACCACTTT 57.962 45.000 1.01 0.00 0.00 2.66
304 305 1.940613 ACAAGTTCGAGCACCACTTTC 59.059 47.619 1.01 0.00 0.00 2.62
305 306 1.939934 CAAGTTCGAGCACCACTTTCA 59.060 47.619 1.01 0.00 0.00 2.69
306 307 2.549754 CAAGTTCGAGCACCACTTTCAT 59.450 45.455 1.01 0.00 0.00 2.57
307 308 2.146342 AGTTCGAGCACCACTTTCATG 58.854 47.619 1.01 0.00 0.00 3.07
308 309 1.873591 GTTCGAGCACCACTTTCATGT 59.126 47.619 0.00 0.00 0.00 3.21
309 310 3.064207 GTTCGAGCACCACTTTCATGTA 58.936 45.455 0.00 0.00 0.00 2.29
310 311 3.610040 TCGAGCACCACTTTCATGTAT 57.390 42.857 0.00 0.00 0.00 2.29
311 312 3.937814 TCGAGCACCACTTTCATGTATT 58.062 40.909 0.00 0.00 0.00 1.89
312 313 4.323417 TCGAGCACCACTTTCATGTATTT 58.677 39.130 0.00 0.00 0.00 1.40
313 314 4.759693 TCGAGCACCACTTTCATGTATTTT 59.240 37.500 0.00 0.00 0.00 1.82
314 315 4.853196 CGAGCACCACTTTCATGTATTTTG 59.147 41.667 0.00 0.00 0.00 2.44
315 316 5.562696 CGAGCACCACTTTCATGTATTTTGT 60.563 40.000 0.00 0.00 0.00 2.83
316 317 6.348132 CGAGCACCACTTTCATGTATTTTGTA 60.348 38.462 0.00 0.00 0.00 2.41
317 318 7.283625 AGCACCACTTTCATGTATTTTGTAA 57.716 32.000 0.00 0.00 0.00 2.41
318 319 7.145323 AGCACCACTTTCATGTATTTTGTAAC 58.855 34.615 0.00 0.00 0.00 2.50
319 320 7.014230 AGCACCACTTTCATGTATTTTGTAACT 59.986 33.333 0.00 0.00 0.00 2.24
320 321 7.651704 GCACCACTTTCATGTATTTTGTAACTT 59.348 33.333 0.00 0.00 0.00 2.66
321 322 9.528018 CACCACTTTCATGTATTTTGTAACTTT 57.472 29.630 0.00 0.00 0.00 2.66
338 339 8.761575 TGTAACTTTAGGTATTAAACTGACCG 57.238 34.615 0.00 0.00 38.35 4.79
339 340 8.367156 TGTAACTTTAGGTATTAAACTGACCGT 58.633 33.333 0.00 0.00 38.35 4.83
340 341 7.662604 AACTTTAGGTATTAAACTGACCGTG 57.337 36.000 0.00 0.00 38.35 4.94
341 342 5.640783 ACTTTAGGTATTAAACTGACCGTGC 59.359 40.000 0.00 0.00 38.35 5.34
342 343 3.688694 AGGTATTAAACTGACCGTGCA 57.311 42.857 0.00 0.00 38.35 4.57
343 344 4.010667 AGGTATTAAACTGACCGTGCAA 57.989 40.909 0.00 0.00 38.35 4.08
344 345 4.000988 AGGTATTAAACTGACCGTGCAAG 58.999 43.478 0.00 0.00 38.35 4.01
345 346 3.998341 GGTATTAAACTGACCGTGCAAGA 59.002 43.478 0.00 0.00 0.00 3.02
346 347 4.142966 GGTATTAAACTGACCGTGCAAGAC 60.143 45.833 0.00 0.00 0.00 3.01
347 348 2.605837 TAAACTGACCGTGCAAGACA 57.394 45.000 0.00 0.37 0.00 3.41
348 349 1.745232 AAACTGACCGTGCAAGACAA 58.255 45.000 0.00 0.00 0.00 3.18
349 350 1.299541 AACTGACCGTGCAAGACAAG 58.700 50.000 0.00 0.00 0.00 3.16
350 351 0.178068 ACTGACCGTGCAAGACAAGT 59.822 50.000 0.00 0.00 0.00 3.16
351 352 1.299541 CTGACCGTGCAAGACAAGTT 58.700 50.000 0.00 0.00 0.00 2.66
352 353 1.003545 CTGACCGTGCAAGACAAGTTG 60.004 52.381 0.00 0.00 0.00 3.16
353 354 1.295792 GACCGTGCAAGACAAGTTGA 58.704 50.000 10.54 0.00 0.00 3.18
354 355 1.261619 GACCGTGCAAGACAAGTTGAG 59.738 52.381 10.54 0.00 0.00 3.02
355 356 0.588252 CCGTGCAAGACAAGTTGAGG 59.412 55.000 10.54 0.00 0.00 3.86
356 357 0.040958 CGTGCAAGACAAGTTGAGGC 60.041 55.000 10.54 7.74 0.00 4.70
357 358 1.024271 GTGCAAGACAAGTTGAGGCA 58.976 50.000 10.54 10.19 0.00 4.75
358 359 1.024271 TGCAAGACAAGTTGAGGCAC 58.976 50.000 10.54 0.00 0.00 5.01
359 360 0.312102 GCAAGACAAGTTGAGGCACC 59.688 55.000 10.54 0.00 0.00 5.01
360 361 1.972872 CAAGACAAGTTGAGGCACCT 58.027 50.000 10.54 0.00 0.00 4.00
361 362 1.876156 CAAGACAAGTTGAGGCACCTC 59.124 52.381 10.54 9.88 43.01 3.85
362 363 0.398318 AGACAAGTTGAGGCACCTCC 59.602 55.000 14.08 0.00 42.09 4.30
363 364 0.108585 GACAAGTTGAGGCACCTCCA 59.891 55.000 14.08 0.00 42.09 3.86
364 365 0.109342 ACAAGTTGAGGCACCTCCAG 59.891 55.000 14.08 2.48 42.09 3.86
365 366 1.073897 AAGTTGAGGCACCTCCAGC 59.926 57.895 14.08 4.48 42.09 4.85
366 367 2.738213 AAGTTGAGGCACCTCCAGCG 62.738 60.000 14.08 0.00 42.09 5.18
367 368 3.241530 TTGAGGCACCTCCAGCGT 61.242 61.111 14.08 0.00 42.09 5.07
368 369 1.911269 TTGAGGCACCTCCAGCGTA 60.911 57.895 14.08 0.00 42.09 4.42
369 370 1.264749 TTGAGGCACCTCCAGCGTAT 61.265 55.000 14.08 0.00 42.09 3.06
370 371 1.264749 TGAGGCACCTCCAGCGTATT 61.265 55.000 14.08 0.00 42.09 1.89
371 372 0.107654 GAGGCACCTCCAGCGTATTT 60.108 55.000 5.30 0.00 37.11 1.40
372 373 1.138266 GAGGCACCTCCAGCGTATTTA 59.862 52.381 5.30 0.00 37.11 1.40
373 374 1.557832 AGGCACCTCCAGCGTATTTAA 59.442 47.619 0.00 0.00 37.29 1.52
374 375 1.669265 GGCACCTCCAGCGTATTTAAC 59.331 52.381 0.00 0.00 34.01 2.01
375 376 2.629051 GCACCTCCAGCGTATTTAACT 58.371 47.619 0.00 0.00 0.00 2.24
376 377 2.608090 GCACCTCCAGCGTATTTAACTC 59.392 50.000 0.00 0.00 0.00 3.01
377 378 3.679083 GCACCTCCAGCGTATTTAACTCT 60.679 47.826 0.00 0.00 0.00 3.24
378 379 4.504858 CACCTCCAGCGTATTTAACTCTT 58.495 43.478 0.00 0.00 0.00 2.85
379 380 4.935808 CACCTCCAGCGTATTTAACTCTTT 59.064 41.667 0.00 0.00 0.00 2.52
380 381 5.411669 CACCTCCAGCGTATTTAACTCTTTT 59.588 40.000 0.00 0.00 0.00 2.27
381 382 6.002082 ACCTCCAGCGTATTTAACTCTTTTT 58.998 36.000 0.00 0.00 0.00 1.94
382 383 7.118680 CACCTCCAGCGTATTTAACTCTTTTTA 59.881 37.037 0.00 0.00 0.00 1.52
383 384 7.118825 ACCTCCAGCGTATTTAACTCTTTTTAC 59.881 37.037 0.00 0.00 0.00 2.01
384 385 7.118680 CCTCCAGCGTATTTAACTCTTTTTACA 59.881 37.037 0.00 0.00 0.00 2.41
385 386 8.380743 TCCAGCGTATTTAACTCTTTTTACAA 57.619 30.769 0.00 0.00 0.00 2.41
386 387 9.005777 TCCAGCGTATTTAACTCTTTTTACAAT 57.994 29.630 0.00 0.00 0.00 2.71
405 406 8.731275 TTACAATATAGGTGTGATCTGTTTGG 57.269 34.615 0.00 0.00 0.00 3.28
406 407 6.721318 ACAATATAGGTGTGATCTGTTTGGT 58.279 36.000 0.00 0.00 0.00 3.67
407 408 6.599244 ACAATATAGGTGTGATCTGTTTGGTG 59.401 38.462 0.00 0.00 0.00 4.17
408 409 2.276732 AGGTGTGATCTGTTTGGTGG 57.723 50.000 0.00 0.00 0.00 4.61
409 410 1.774254 AGGTGTGATCTGTTTGGTGGA 59.226 47.619 0.00 0.00 0.00 4.02
410 411 2.376518 AGGTGTGATCTGTTTGGTGGAT 59.623 45.455 0.00 0.00 0.00 3.41
411 412 3.587061 AGGTGTGATCTGTTTGGTGGATA 59.413 43.478 0.00 0.00 0.00 2.59
412 413 4.228210 AGGTGTGATCTGTTTGGTGGATAT 59.772 41.667 0.00 0.00 0.00 1.63
413 414 4.336433 GGTGTGATCTGTTTGGTGGATATG 59.664 45.833 0.00 0.00 0.00 1.78
414 415 4.336433 GTGTGATCTGTTTGGTGGATATGG 59.664 45.833 0.00 0.00 0.00 2.74
415 416 4.227073 TGTGATCTGTTTGGTGGATATGGA 59.773 41.667 0.00 0.00 0.00 3.41
416 417 5.103982 TGTGATCTGTTTGGTGGATATGGAT 60.104 40.000 0.00 0.00 0.00 3.41
417 418 5.240183 GTGATCTGTTTGGTGGATATGGATG 59.760 44.000 0.00 0.00 0.00 3.51
418 419 5.132480 TGATCTGTTTGGTGGATATGGATGA 59.868 40.000 0.00 0.00 0.00 2.92
419 420 5.651612 TCTGTTTGGTGGATATGGATGAT 57.348 39.130 0.00 0.00 0.00 2.45
420 421 6.762077 TCTGTTTGGTGGATATGGATGATA 57.238 37.500 0.00 0.00 0.00 2.15
421 422 7.333779 TCTGTTTGGTGGATATGGATGATAT 57.666 36.000 0.00 0.00 0.00 1.63
422 423 7.170277 TCTGTTTGGTGGATATGGATGATATG 58.830 38.462 0.00 0.00 0.00 1.78
423 424 6.851318 TGTTTGGTGGATATGGATGATATGT 58.149 36.000 0.00 0.00 0.00 2.29
424 425 7.296856 TGTTTGGTGGATATGGATGATATGTT 58.703 34.615 0.00 0.00 0.00 2.71
425 426 7.231115 TGTTTGGTGGATATGGATGATATGTTG 59.769 37.037 0.00 0.00 0.00 3.33
426 427 6.452757 TGGTGGATATGGATGATATGTTGT 57.547 37.500 0.00 0.00 0.00 3.32
427 428 6.851318 TGGTGGATATGGATGATATGTTGTT 58.149 36.000 0.00 0.00 0.00 2.83
428 429 6.716173 TGGTGGATATGGATGATATGTTGTTG 59.284 38.462 0.00 0.00 0.00 3.33
429 430 6.151648 GGTGGATATGGATGATATGTTGTTGG 59.848 42.308 0.00 0.00 0.00 3.77
430 431 6.151648 GTGGATATGGATGATATGTTGTTGGG 59.848 42.308 0.00 0.00 0.00 4.12
431 432 5.653769 GGATATGGATGATATGTTGTTGGGG 59.346 44.000 0.00 0.00 0.00 4.96
432 433 2.665165 TGGATGATATGTTGTTGGGGC 58.335 47.619 0.00 0.00 0.00 5.80
433 434 2.024560 TGGATGATATGTTGTTGGGGCA 60.025 45.455 0.00 0.00 0.00 5.36
434 435 3.233507 GGATGATATGTTGTTGGGGCAT 58.766 45.455 0.00 0.00 0.00 4.40
435 436 3.642848 GGATGATATGTTGTTGGGGCATT 59.357 43.478 0.00 0.00 0.00 3.56
436 437 4.101430 GGATGATATGTTGTTGGGGCATTT 59.899 41.667 0.00 0.00 0.00 2.32
437 438 4.468765 TGATATGTTGTTGGGGCATTTG 57.531 40.909 0.00 0.00 0.00 2.32
438 439 4.092279 TGATATGTTGTTGGGGCATTTGA 58.908 39.130 0.00 0.00 0.00 2.69
439 440 4.715792 TGATATGTTGTTGGGGCATTTGAT 59.284 37.500 0.00 0.00 0.00 2.57
440 441 5.189342 TGATATGTTGTTGGGGCATTTGATT 59.811 36.000 0.00 0.00 0.00 2.57
441 442 3.399440 TGTTGTTGGGGCATTTGATTC 57.601 42.857 0.00 0.00 0.00 2.52
442 443 2.702478 TGTTGTTGGGGCATTTGATTCA 59.298 40.909 0.00 0.00 0.00 2.57
443 444 3.327172 TGTTGTTGGGGCATTTGATTCAT 59.673 39.130 0.00 0.00 0.00 2.57
444 445 3.613494 TGTTGGGGCATTTGATTCATG 57.387 42.857 0.00 0.00 0.00 3.07
445 446 3.171528 TGTTGGGGCATTTGATTCATGA 58.828 40.909 0.00 0.00 0.00 3.07
446 447 3.581770 TGTTGGGGCATTTGATTCATGAA 59.418 39.130 11.26 11.26 0.00 2.57
447 448 4.041321 TGTTGGGGCATTTGATTCATGAAA 59.959 37.500 13.09 0.00 0.00 2.69
448 449 5.187687 GTTGGGGCATTTGATTCATGAAAT 58.812 37.500 13.09 0.00 0.00 2.17
449 450 5.438698 TGGGGCATTTGATTCATGAAATT 57.561 34.783 13.09 0.00 0.00 1.82
450 451 5.817784 TGGGGCATTTGATTCATGAAATTT 58.182 33.333 13.09 0.00 0.00 1.82
451 452 6.246919 TGGGGCATTTGATTCATGAAATTTT 58.753 32.000 13.09 0.00 0.00 1.82
452 453 6.151312 TGGGGCATTTGATTCATGAAATTTTG 59.849 34.615 13.09 8.09 0.00 2.44
453 454 6.374894 GGGGCATTTGATTCATGAAATTTTGA 59.625 34.615 13.09 0.00 0.00 2.69
454 455 7.094291 GGGGCATTTGATTCATGAAATTTTGAA 60.094 33.333 13.09 7.56 36.38 2.69
455 456 7.751793 GGGCATTTGATTCATGAAATTTTGAAC 59.248 33.333 13.09 0.95 34.87 3.18
456 457 8.508875 GGCATTTGATTCATGAAATTTTGAACT 58.491 29.630 13.09 0.00 34.87 3.01
457 458 9.537848 GCATTTGATTCATGAAATTTTGAACTC 57.462 29.630 13.09 2.65 34.87 3.01
462 463 8.714179 TGATTCATGAAATTTTGAACTCAATGC 58.286 29.630 13.09 0.00 34.87 3.56
463 464 8.610248 ATTCATGAAATTTTGAACTCAATGCA 57.390 26.923 13.09 0.00 34.87 3.96
464 465 8.610248 TTCATGAAATTTTGAACTCAATGCAT 57.390 26.923 5.45 0.00 35.55 3.96
465 466 8.024146 TCATGAAATTTTGAACTCAATGCATG 57.976 30.769 0.00 6.30 35.55 4.06
466 467 7.873505 TCATGAAATTTTGAACTCAATGCATGA 59.126 29.630 0.00 9.63 35.55 3.07
479 480 5.953183 TCAATGCATGAGTATTTTGTGACC 58.047 37.500 0.00 0.00 33.04 4.02
480 481 5.711506 TCAATGCATGAGTATTTTGTGACCT 59.288 36.000 0.00 0.00 33.04 3.85
481 482 6.209192 TCAATGCATGAGTATTTTGTGACCTT 59.791 34.615 0.00 0.00 33.04 3.50
482 483 6.594788 ATGCATGAGTATTTTGTGACCTTT 57.405 33.333 0.00 0.00 0.00 3.11
483 484 6.012658 TGCATGAGTATTTTGTGACCTTTC 57.987 37.500 0.00 0.00 0.00 2.62
484 485 5.769662 TGCATGAGTATTTTGTGACCTTTCT 59.230 36.000 0.00 0.00 0.00 2.52
485 486 6.265196 TGCATGAGTATTTTGTGACCTTTCTT 59.735 34.615 0.00 0.00 0.00 2.52
486 487 7.147976 GCATGAGTATTTTGTGACCTTTCTTT 58.852 34.615 0.00 0.00 0.00 2.52
487 488 7.115378 GCATGAGTATTTTGTGACCTTTCTTTG 59.885 37.037 0.00 0.00 0.00 2.77
488 489 6.503524 TGAGTATTTTGTGACCTTTCTTTGC 58.496 36.000 0.00 0.00 0.00 3.68
489 490 6.321181 TGAGTATTTTGTGACCTTTCTTTGCT 59.679 34.615 0.00 0.00 0.00 3.91
490 491 7.500892 TGAGTATTTTGTGACCTTTCTTTGCTA 59.499 33.333 0.00 0.00 0.00 3.49
491 492 7.875971 AGTATTTTGTGACCTTTCTTTGCTAG 58.124 34.615 0.00 0.00 0.00 3.42
492 493 4.568152 TTTGTGACCTTTCTTTGCTAGC 57.432 40.909 8.10 8.10 0.00 3.42
493 494 3.492102 TGTGACCTTTCTTTGCTAGCT 57.508 42.857 17.23 0.00 0.00 3.32
494 495 3.141398 TGTGACCTTTCTTTGCTAGCTG 58.859 45.455 17.23 6.45 0.00 4.24
495 496 2.485814 GTGACCTTTCTTTGCTAGCTGG 59.514 50.000 17.23 6.07 0.00 4.85
496 497 2.106511 TGACCTTTCTTTGCTAGCTGGT 59.893 45.455 17.23 11.69 0.00 4.00
497 498 3.149981 GACCTTTCTTTGCTAGCTGGTT 58.850 45.455 17.23 0.00 0.00 3.67
498 499 4.202419 TGACCTTTCTTTGCTAGCTGGTTA 60.202 41.667 17.23 6.70 0.00 2.85
499 500 4.725490 ACCTTTCTTTGCTAGCTGGTTAA 58.275 39.130 17.23 0.00 0.00 2.01
500 501 5.325239 ACCTTTCTTTGCTAGCTGGTTAAT 58.675 37.500 17.23 0.00 0.00 1.40
501 502 6.481643 ACCTTTCTTTGCTAGCTGGTTAATA 58.518 36.000 17.23 0.00 0.00 0.98
502 503 7.119387 ACCTTTCTTTGCTAGCTGGTTAATAT 58.881 34.615 17.23 0.00 0.00 1.28
503 504 8.272173 ACCTTTCTTTGCTAGCTGGTTAATATA 58.728 33.333 17.23 0.00 0.00 0.86
504 505 9.289782 CCTTTCTTTGCTAGCTGGTTAATATAT 57.710 33.333 17.23 0.00 0.00 0.86
527 528 5.904362 ATCTTGTCAGTATTTCTTTGCCC 57.096 39.130 0.00 0.00 0.00 5.36
528 529 4.724399 TCTTGTCAGTATTTCTTTGCCCA 58.276 39.130 0.00 0.00 0.00 5.36
529 530 4.518970 TCTTGTCAGTATTTCTTTGCCCAC 59.481 41.667 0.00 0.00 0.00 4.61
530 531 4.098914 TGTCAGTATTTCTTTGCCCACT 57.901 40.909 0.00 0.00 0.00 4.00
531 532 4.469657 TGTCAGTATTTCTTTGCCCACTT 58.530 39.130 0.00 0.00 0.00 3.16
532 533 4.278170 TGTCAGTATTTCTTTGCCCACTTG 59.722 41.667 0.00 0.00 0.00 3.16
533 534 4.518970 GTCAGTATTTCTTTGCCCACTTGA 59.481 41.667 0.00 0.00 0.00 3.02
534 535 5.009610 GTCAGTATTTCTTTGCCCACTTGAA 59.990 40.000 0.00 0.00 0.00 2.69
535 536 5.774690 TCAGTATTTCTTTGCCCACTTGAAT 59.225 36.000 0.00 0.00 0.00 2.57
536 537 6.267471 TCAGTATTTCTTTGCCCACTTGAATT 59.733 34.615 0.00 0.00 0.00 2.17
537 538 6.366877 CAGTATTTCTTTGCCCACTTGAATTG 59.633 38.462 0.00 0.00 0.00 2.32
538 539 5.549742 ATTTCTTTGCCCACTTGAATTGA 57.450 34.783 0.00 0.00 0.00 2.57
539 540 5.549742 TTTCTTTGCCCACTTGAATTGAT 57.450 34.783 0.00 0.00 0.00 2.57
540 541 5.549742 TTCTTTGCCCACTTGAATTGATT 57.450 34.783 0.00 0.00 0.00 2.57
541 542 4.885413 TCTTTGCCCACTTGAATTGATTG 58.115 39.130 0.00 0.00 0.00 2.67
542 543 2.747396 TGCCCACTTGAATTGATTGC 57.253 45.000 0.00 0.00 0.00 3.56
543 544 1.969208 TGCCCACTTGAATTGATTGCA 59.031 42.857 0.00 0.00 0.00 4.08
544 545 2.367894 TGCCCACTTGAATTGATTGCAA 59.632 40.909 0.00 0.00 38.60 4.08
545 546 3.181457 TGCCCACTTGAATTGATTGCAAA 60.181 39.130 1.71 0.00 37.59 3.68
546 547 3.814283 GCCCACTTGAATTGATTGCAAAA 59.186 39.130 1.71 0.00 37.59 2.44
547 548 4.275443 GCCCACTTGAATTGATTGCAAAAA 59.725 37.500 1.71 1.22 37.59 1.94
594 595 3.119096 GTTTGGCGGACGAGCTCC 61.119 66.667 8.47 0.00 37.29 4.70
620 621 1.532007 GCTCGGTATCCTAGTCGTCTG 59.468 57.143 0.00 0.00 0.00 3.51
647 648 0.742281 ATCTAGCAGCTGCACCAACG 60.742 55.000 38.24 19.34 45.16 4.10
667 668 6.971756 CCAACGCATTTAATGACATGTATTCA 59.028 34.615 9.36 0.00 0.00 2.57
672 673 8.069574 CGCATTTAATGACATGTATTCAAGCTA 58.930 33.333 9.36 0.00 0.00 3.32
700 701 4.870426 GGATATATGCCACACCGTATTCTG 59.130 45.833 0.00 0.00 0.00 3.02
710 711 5.806502 CCACACCGTATTCTGTATTTTCGTA 59.193 40.000 0.00 0.00 0.00 3.43
722 723 7.520119 CTGTATTTTCGTACAGTAGCATTCA 57.480 36.000 6.02 0.00 44.10 2.57
750 751 0.804544 CGAAAATGCATGGCAGGCTG 60.805 55.000 25.44 10.94 43.65 4.85
845 846 1.376466 AGCTCACGCTCCCATGTTT 59.624 52.632 0.00 0.00 45.15 2.83
866 867 5.888691 TTAGAGATAAGCCGATGAGCTAG 57.111 43.478 0.00 0.00 44.11 3.42
867 868 2.491693 AGAGATAAGCCGATGAGCTAGC 59.508 50.000 6.62 6.62 44.11 3.42
951 952 1.576356 CGGAGAACAGCAGCCTAATC 58.424 55.000 0.00 0.00 0.00 1.75
957 958 3.265479 AGAACAGCAGCCTAATCCTTCTT 59.735 43.478 0.00 0.00 0.00 2.52
992 993 5.668471 TCTCATCAGTGAATAGCTTGGAAG 58.332 41.667 0.00 0.00 33.05 3.46
1104 1105 2.057922 AGGGTGGAGACAAACATCTGT 58.942 47.619 0.00 0.00 46.06 3.41
1152 1153 1.491505 GCTTCTACAAGCGCCCGATC 61.492 60.000 2.29 0.00 45.67 3.69
1172 1173 5.220228 CGATCGACAGTGTAAGTTTTCATCC 60.220 44.000 10.26 0.00 0.00 3.51
1373 1376 2.335712 CCAAGGTTCGAGCCAAGGC 61.336 63.158 21.22 2.02 42.33 4.35
1432 1435 2.279120 CGAGATCGTCAGGCAGCC 60.279 66.667 1.84 1.84 34.11 4.85
1545 1548 2.139323 ACGGGTGTGATGAGCTACTA 57.861 50.000 0.00 0.00 0.00 1.82
1554 1557 3.733224 GTGATGAGCTACTATCAAGCACG 59.267 47.826 8.78 0.00 42.62 5.34
1640 1643 1.011451 GTTGCGAGTCACTGAGCCTC 61.011 60.000 0.00 0.00 0.00 4.70
1712 1715 8.076178 GTCAGTGTATGCTTCAAGTTTATGTTT 58.924 33.333 0.00 0.00 0.00 2.83
1776 1779 3.318275 GGATGGACACGCTAATCAGTCTA 59.682 47.826 0.00 0.00 0.00 2.59
1784 1787 1.067821 GCTAATCAGTCTAGCCAGCGT 59.932 52.381 0.00 0.00 36.56 5.07
1829 1832 0.686789 GGCCCCACTTTTTGCTTGAT 59.313 50.000 0.00 0.00 0.00 2.57
1924 1927 0.823356 GCACACAACCACCATCACCT 60.823 55.000 0.00 0.00 0.00 4.00
1926 1929 2.426522 CACACAACCACCATCACCTAG 58.573 52.381 0.00 0.00 0.00 3.02
1943 1946 3.129988 ACCTAGCAGTAAATAGAACGCGT 59.870 43.478 5.58 5.58 0.00 6.01
1947 1950 2.855963 GCAGTAAATAGAACGCGTGCTA 59.144 45.455 28.50 28.50 0.00 3.49
1995 1998 1.075482 CCCCTGCTTTTCTGCCTCA 59.925 57.895 0.00 0.00 0.00 3.86
2006 2009 3.519973 CTGCCTCACTCACCGCACA 62.520 63.158 0.00 0.00 0.00 4.57
2033 2036 1.385206 GCATCTCCTTCCTCCCCCT 60.385 63.158 0.00 0.00 0.00 4.79
2054 2057 1.211969 CAGCGCTGAAGCTTGCATT 59.788 52.632 33.66 0.00 46.80 3.56
2131 2134 0.322366 AAGCAAGAAGAGGAGGCAGC 60.322 55.000 0.00 0.00 0.00 5.25
2132 2135 1.002868 GCAAGAAGAGGAGGCAGCA 60.003 57.895 0.00 0.00 0.00 4.41
2170 2173 2.771943 CAGGAGGCAGGTATGTAAAGGA 59.228 50.000 0.00 0.00 0.00 3.36
2199 2202 3.020274 ACTCTCTGTATCACACTCGCAT 58.980 45.455 0.00 0.00 0.00 4.73
2258 2261 6.092122 CCATTGAAATGCTCGAGTTTAGTACA 59.908 38.462 15.13 1.41 35.08 2.90
2303 2306 8.908786 TTGATTTACCAGATCCATCTTGTATC 57.091 34.615 2.26 0.95 35.69 2.24
2321 2324 8.807118 TCTTGTATCTTCTGTTCAATCTGTAGT 58.193 33.333 0.00 0.00 0.00 2.73
2341 2344 1.153568 CGCACCTCATCACATCGGT 60.154 57.895 0.00 0.00 0.00 4.69
2345 2348 0.173481 ACCTCATCACATCGGTGTCG 59.827 55.000 0.00 0.00 45.45 4.35
2347 2350 1.404181 CCTCATCACATCGGTGTCGTT 60.404 52.381 0.00 0.00 45.45 3.85
2459 2462 6.637658 GCGTAGTTACATCTAGGATTTCAGTC 59.362 42.308 0.00 0.00 0.00 3.51
2467 2470 5.505181 TCTAGGATTTCAGTCCAAAAGCT 57.495 39.130 0.00 0.00 40.90 3.74
2528 2531 6.404074 GGAAGTTGATAGCAGAGATTGGTTTG 60.404 42.308 0.00 0.00 38.70 2.93
2529 2532 5.809001 AGTTGATAGCAGAGATTGGTTTGA 58.191 37.500 0.00 0.00 38.70 2.69
2531 2534 6.373774 AGTTGATAGCAGAGATTGGTTTGAAG 59.626 38.462 0.00 0.00 38.70 3.02
2533 2536 2.165998 AGCAGAGATTGGTTTGAAGGC 58.834 47.619 0.00 0.00 32.47 4.35
2534 2537 1.135575 GCAGAGATTGGTTTGAAGGCG 60.136 52.381 0.00 0.00 0.00 5.52
2535 2538 2.154462 CAGAGATTGGTTTGAAGGCGT 58.846 47.619 0.00 0.00 0.00 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.981416 TCGAACTCTATGTATTGCATCGC 59.019 43.478 0.00 0.00 38.94 4.58
1 2 4.383052 GGTCGAACTCTATGTATTGCATCG 59.617 45.833 0.00 0.00 38.94 3.84
2 3 5.533482 AGGTCGAACTCTATGTATTGCATC 58.467 41.667 0.00 0.00 38.94 3.91
3 4 5.069119 TGAGGTCGAACTCTATGTATTGCAT 59.931 40.000 29.54 0.00 38.32 3.96
4 5 4.401202 TGAGGTCGAACTCTATGTATTGCA 59.599 41.667 29.54 4.53 38.32 4.08
5 6 4.933330 TGAGGTCGAACTCTATGTATTGC 58.067 43.478 29.54 1.68 38.32 3.56
6 7 9.698309 AATATTGAGGTCGAACTCTATGTATTG 57.302 33.333 29.85 0.00 38.32 1.90
10 11 8.915036 AGTAAATATTGAGGTCGAACTCTATGT 58.085 33.333 29.85 23.30 38.32 2.29
11 12 9.186323 CAGTAAATATTGAGGTCGAACTCTATG 57.814 37.037 29.85 14.28 38.32 2.23
12 13 9.132923 TCAGTAAATATTGAGGTCGAACTCTAT 57.867 33.333 29.54 27.92 38.32 1.98
13 14 8.515695 TCAGTAAATATTGAGGTCGAACTCTA 57.484 34.615 29.54 23.45 38.32 2.43
14 15 7.406031 TCAGTAAATATTGAGGTCGAACTCT 57.594 36.000 29.54 14.32 38.32 3.24
15 16 6.199342 GCTCAGTAAATATTGAGGTCGAACTC 59.801 42.308 23.85 23.85 39.56 3.01
16 17 6.043411 GCTCAGTAAATATTGAGGTCGAACT 58.957 40.000 0.34 0.34 39.56 3.01
17 18 6.043411 AGCTCAGTAAATATTGAGGTCGAAC 58.957 40.000 10.67 0.00 44.06 3.95
18 19 6.222038 AGCTCAGTAAATATTGAGGTCGAA 57.778 37.500 10.67 0.00 44.06 3.71
19 20 5.854010 AGCTCAGTAAATATTGAGGTCGA 57.146 39.130 10.67 0.00 44.06 4.20
20 21 7.148641 ACATAGCTCAGTAAATATTGAGGTCG 58.851 38.462 17.37 13.44 44.06 4.79
23 24 9.376075 CCATACATAGCTCAGTAAATATTGAGG 57.624 37.037 12.94 1.89 39.56 3.86
24 25 8.877779 GCCATACATAGCTCAGTAAATATTGAG 58.122 37.037 8.20 8.20 41.37 3.02
25 26 8.374743 TGCCATACATAGCTCAGTAAATATTGA 58.625 33.333 0.00 0.00 0.00 2.57
26 27 8.446273 GTGCCATACATAGCTCAGTAAATATTG 58.554 37.037 0.00 0.00 0.00 1.90
27 28 7.331934 CGTGCCATACATAGCTCAGTAAATATT 59.668 37.037 0.00 0.00 0.00 1.28
28 29 6.813649 CGTGCCATACATAGCTCAGTAAATAT 59.186 38.462 0.00 0.00 0.00 1.28
29 30 6.156519 CGTGCCATACATAGCTCAGTAAATA 58.843 40.000 0.00 0.00 0.00 1.40
30 31 4.991056 CGTGCCATACATAGCTCAGTAAAT 59.009 41.667 0.00 0.00 0.00 1.40
31 32 4.368315 CGTGCCATACATAGCTCAGTAAA 58.632 43.478 0.00 0.00 0.00 2.01
32 33 3.243737 CCGTGCCATACATAGCTCAGTAA 60.244 47.826 0.00 0.00 0.00 2.24
33 34 2.296190 CCGTGCCATACATAGCTCAGTA 59.704 50.000 0.00 0.00 0.00 2.74
34 35 1.069204 CCGTGCCATACATAGCTCAGT 59.931 52.381 0.00 0.00 0.00 3.41
35 36 1.069204 ACCGTGCCATACATAGCTCAG 59.931 52.381 0.00 0.00 0.00 3.35
36 37 1.119684 ACCGTGCCATACATAGCTCA 58.880 50.000 0.00 0.00 0.00 4.26
37 38 1.502231 CACCGTGCCATACATAGCTC 58.498 55.000 0.00 0.00 0.00 4.09
38 39 0.106708 CCACCGTGCCATACATAGCT 59.893 55.000 0.00 0.00 0.00 3.32
39 40 0.105964 TCCACCGTGCCATACATAGC 59.894 55.000 0.00 0.00 0.00 2.97
40 41 1.138069 TGTCCACCGTGCCATACATAG 59.862 52.381 0.00 0.00 0.00 2.23
41 42 1.196012 TGTCCACCGTGCCATACATA 58.804 50.000 0.00 0.00 0.00 2.29
42 43 0.326595 TTGTCCACCGTGCCATACAT 59.673 50.000 0.00 0.00 0.00 2.29
43 44 0.604243 GTTGTCCACCGTGCCATACA 60.604 55.000 0.00 0.00 0.00 2.29
44 45 1.303091 GGTTGTCCACCGTGCCATAC 61.303 60.000 0.00 0.00 35.12 2.39
45 46 1.003112 GGTTGTCCACCGTGCCATA 60.003 57.895 0.00 0.00 35.12 2.74
46 47 2.282180 GGTTGTCCACCGTGCCAT 60.282 61.111 0.00 0.00 35.12 4.40
53 54 4.856518 ATTGTACGCAAAGGTTGTCCACC 61.857 47.826 0.00 0.00 40.19 4.61
54 55 1.301423 TGTACGCAAAGGTTGTCCAC 58.699 50.000 0.00 0.00 35.89 4.02
55 56 2.039818 TTGTACGCAAAGGTTGTCCA 57.960 45.000 0.00 0.00 35.89 4.02
56 57 2.920647 GCATTGTACGCAAAGGTTGTCC 60.921 50.000 0.00 0.00 38.21 4.02
57 58 2.287308 TGCATTGTACGCAAAGGTTGTC 60.287 45.455 0.00 0.00 38.21 3.18
58 59 1.678627 TGCATTGTACGCAAAGGTTGT 59.321 42.857 0.00 0.00 38.21 3.32
59 60 2.414058 TGCATTGTACGCAAAGGTTG 57.586 45.000 0.00 0.00 38.21 3.77
66 67 2.159430 GTCACAGATTGCATTGTACGCA 59.841 45.455 0.00 0.00 37.68 5.24
67 68 2.159430 TGTCACAGATTGCATTGTACGC 59.841 45.455 0.00 0.00 0.00 4.42
68 69 4.403015 TTGTCACAGATTGCATTGTACG 57.597 40.909 0.00 0.00 0.00 3.67
69 70 5.941733 TCATTGTCACAGATTGCATTGTAC 58.058 37.500 0.00 0.00 0.00 2.90
70 71 5.124297 CCTCATTGTCACAGATTGCATTGTA 59.876 40.000 0.00 0.00 0.00 2.41
71 72 4.082408 CCTCATTGTCACAGATTGCATTGT 60.082 41.667 0.00 0.00 0.00 2.71
72 73 4.421058 CCTCATTGTCACAGATTGCATTG 58.579 43.478 0.00 0.00 0.00 2.82
73 74 3.446161 CCCTCATTGTCACAGATTGCATT 59.554 43.478 0.00 0.00 0.00 3.56
74 75 3.021695 CCCTCATTGTCACAGATTGCAT 58.978 45.455 0.00 0.00 0.00 3.96
75 76 2.224843 ACCCTCATTGTCACAGATTGCA 60.225 45.455 0.00 0.00 0.00 4.08
76 77 2.440409 ACCCTCATTGTCACAGATTGC 58.560 47.619 0.00 0.00 0.00 3.56
77 78 3.125829 CGAACCCTCATTGTCACAGATTG 59.874 47.826 0.00 0.00 0.00 2.67
78 79 3.007940 TCGAACCCTCATTGTCACAGATT 59.992 43.478 0.00 0.00 0.00 2.40
79 80 2.567169 TCGAACCCTCATTGTCACAGAT 59.433 45.455 0.00 0.00 0.00 2.90
80 81 1.967779 TCGAACCCTCATTGTCACAGA 59.032 47.619 0.00 0.00 0.00 3.41
81 82 2.455674 TCGAACCCTCATTGTCACAG 57.544 50.000 0.00 0.00 0.00 3.66
82 83 2.354704 GGATCGAACCCTCATTGTCACA 60.355 50.000 0.00 0.00 0.00 3.58
83 84 2.093447 AGGATCGAACCCTCATTGTCAC 60.093 50.000 8.30 0.00 0.00 3.67
84 85 2.093500 CAGGATCGAACCCTCATTGTCA 60.093 50.000 8.30 0.00 0.00 3.58
85 86 2.093447 ACAGGATCGAACCCTCATTGTC 60.093 50.000 8.30 0.00 0.00 3.18
86 87 1.909302 ACAGGATCGAACCCTCATTGT 59.091 47.619 8.30 2.91 0.00 2.71
87 88 2.698855 ACAGGATCGAACCCTCATTG 57.301 50.000 8.30 2.24 0.00 2.82
88 89 3.967326 TGATACAGGATCGAACCCTCATT 59.033 43.478 8.30 0.00 37.38 2.57
89 90 3.322254 GTGATACAGGATCGAACCCTCAT 59.678 47.826 8.30 4.63 37.38 2.90
90 91 2.693591 GTGATACAGGATCGAACCCTCA 59.306 50.000 8.30 4.19 37.38 3.86
91 92 2.693591 TGTGATACAGGATCGAACCCTC 59.306 50.000 8.30 1.62 37.38 4.30
92 93 2.747177 TGTGATACAGGATCGAACCCT 58.253 47.619 8.30 5.99 37.38 4.34
93 94 3.753294 ATGTGATACAGGATCGAACCC 57.247 47.619 8.30 3.48 37.38 4.11
94 95 6.436843 AAAAATGTGATACAGGATCGAACC 57.563 37.500 2.97 2.97 37.38 3.62
126 127 9.563748 TCATGCATGTAAATCTCATGAATTAGA 57.436 29.630 25.43 0.00 43.47 2.10
127 128 9.608617 GTCATGCATGTAAATCTCATGAATTAG 57.391 33.333 25.43 0.00 43.22 1.73
128 129 9.346005 AGTCATGCATGTAAATCTCATGAATTA 57.654 29.630 25.43 0.00 43.22 1.40
129 130 8.234136 AGTCATGCATGTAAATCTCATGAATT 57.766 30.769 25.43 0.00 43.22 2.17
130 131 7.818997 AGTCATGCATGTAAATCTCATGAAT 57.181 32.000 25.43 7.60 43.22 2.57
131 132 8.735692 TTAGTCATGCATGTAAATCTCATGAA 57.264 30.769 25.43 0.00 43.22 2.57
132 133 8.735692 TTTAGTCATGCATGTAAATCTCATGA 57.264 30.769 25.43 0.00 43.47 3.07
133 134 9.791820 TTTTTAGTCATGCATGTAAATCTCATG 57.208 29.630 25.43 0.00 43.58 3.07
158 159 8.499288 TTTTTACAAGACCCCCTCATATTTTT 57.501 30.769 0.00 0.00 0.00 1.94
181 182 1.305930 GCCCGAGCGTGAGGATTTTT 61.306 55.000 0.00 0.00 0.00 1.94
182 183 1.745489 GCCCGAGCGTGAGGATTTT 60.745 57.895 0.00 0.00 0.00 1.82
183 184 2.125106 GCCCGAGCGTGAGGATTT 60.125 61.111 0.00 0.00 0.00 2.17
184 185 4.162690 GGCCCGAGCGTGAGGATT 62.163 66.667 0.00 0.00 41.24 3.01
200 201 4.659172 TTGGAAGGCGCTGGGTGG 62.659 66.667 7.64 0.00 0.00 4.61
201 202 3.365265 GTTGGAAGGCGCTGGGTG 61.365 66.667 7.64 0.00 0.00 4.61
202 203 3.553095 GAGTTGGAAGGCGCTGGGT 62.553 63.158 7.64 0.00 0.00 4.51
203 204 2.747855 GAGTTGGAAGGCGCTGGG 60.748 66.667 7.64 0.00 0.00 4.45
204 205 1.743252 GAGAGTTGGAAGGCGCTGG 60.743 63.158 7.64 0.00 0.00 4.85
205 206 1.004560 TGAGAGTTGGAAGGCGCTG 60.005 57.895 7.64 0.00 0.00 5.18
206 207 1.294780 CTGAGAGTTGGAAGGCGCT 59.705 57.895 7.64 0.00 0.00 5.92
207 208 2.394563 GCTGAGAGTTGGAAGGCGC 61.395 63.158 0.00 0.00 0.00 6.53
208 209 1.743252 GGCTGAGAGTTGGAAGGCG 60.743 63.158 0.00 0.00 0.00 5.52
209 210 0.034670 ATGGCTGAGAGTTGGAAGGC 60.035 55.000 0.00 0.00 35.87 4.35
210 211 2.089980 CAATGGCTGAGAGTTGGAAGG 58.910 52.381 0.00 0.00 0.00 3.46
211 212 2.486982 CACAATGGCTGAGAGTTGGAAG 59.513 50.000 0.00 0.00 0.00 3.46
212 213 2.507484 CACAATGGCTGAGAGTTGGAA 58.493 47.619 0.00 0.00 0.00 3.53
213 214 1.271543 CCACAATGGCTGAGAGTTGGA 60.272 52.381 0.00 0.00 0.00 3.53
214 215 1.171308 CCACAATGGCTGAGAGTTGG 58.829 55.000 0.00 0.00 0.00 3.77
215 216 1.171308 CCCACAATGGCTGAGAGTTG 58.829 55.000 0.00 0.00 35.79 3.16
216 217 3.658398 CCCACAATGGCTGAGAGTT 57.342 52.632 0.00 0.00 35.79 3.01
225 226 1.586154 GAACGTCCAGCCCACAATGG 61.586 60.000 0.00 0.00 37.97 3.16
226 227 0.888736 TGAACGTCCAGCCCACAATG 60.889 55.000 0.00 0.00 0.00 2.82
227 228 0.038166 ATGAACGTCCAGCCCACAAT 59.962 50.000 0.00 0.00 0.00 2.71
228 229 0.179004 AATGAACGTCCAGCCCACAA 60.179 50.000 0.00 0.00 0.00 3.33
229 230 0.605319 GAATGAACGTCCAGCCCACA 60.605 55.000 0.00 0.00 0.00 4.17
230 231 1.635663 CGAATGAACGTCCAGCCCAC 61.636 60.000 0.00 0.00 0.00 4.61
231 232 1.375396 CGAATGAACGTCCAGCCCA 60.375 57.895 0.00 0.00 0.00 5.36
232 233 2.106683 CCGAATGAACGTCCAGCCC 61.107 63.158 0.00 0.00 0.00 5.19
233 234 0.462047 ATCCGAATGAACGTCCAGCC 60.462 55.000 0.00 0.00 0.00 4.85
234 235 1.859080 GTATCCGAATGAACGTCCAGC 59.141 52.381 0.00 0.00 0.00 4.85
235 236 2.117137 CGTATCCGAATGAACGTCCAG 58.883 52.381 0.00 0.00 35.63 3.86
236 237 1.202325 CCGTATCCGAATGAACGTCCA 60.202 52.381 0.00 0.00 35.63 4.02
237 238 1.066002 TCCGTATCCGAATGAACGTCC 59.934 52.381 0.00 0.00 35.63 4.79
238 239 2.480224 TCCGTATCCGAATGAACGTC 57.520 50.000 0.00 0.00 35.63 4.34
239 240 2.545113 CCATCCGTATCCGAATGAACGT 60.545 50.000 0.00 0.00 35.63 3.99
240 241 2.058798 CCATCCGTATCCGAATGAACG 58.941 52.381 0.00 0.00 35.63 3.95
241 242 3.318017 CTCCATCCGTATCCGAATGAAC 58.682 50.000 0.00 0.00 35.63 3.18
242 243 2.299013 CCTCCATCCGTATCCGAATGAA 59.701 50.000 0.00 0.00 35.63 2.57
243 244 1.893137 CCTCCATCCGTATCCGAATGA 59.107 52.381 0.00 0.00 35.63 2.57
244 245 1.673033 GCCTCCATCCGTATCCGAATG 60.673 57.143 0.00 0.00 35.63 2.67
245 246 0.608640 GCCTCCATCCGTATCCGAAT 59.391 55.000 0.00 0.00 35.63 3.34
246 247 0.757561 TGCCTCCATCCGTATCCGAA 60.758 55.000 0.00 0.00 35.63 4.30
247 248 1.152631 TGCCTCCATCCGTATCCGA 60.153 57.895 0.00 0.00 35.63 4.55
248 249 1.006102 GTGCCTCCATCCGTATCCG 60.006 63.158 0.00 0.00 0.00 4.18
249 250 1.371558 GGTGCCTCCATCCGTATCC 59.628 63.158 0.00 0.00 35.97 2.59
250 251 2.133195 TGGTGCCTCCATCCGTATC 58.867 57.895 0.00 0.00 41.93 2.24
251 252 4.392220 TGGTGCCTCCATCCGTAT 57.608 55.556 0.00 0.00 41.93 3.06
259 260 3.067106 CACATACGAATATGGTGCCTCC 58.933 50.000 0.00 0.00 42.32 4.30
260 261 2.480419 GCACATACGAATATGGTGCCTC 59.520 50.000 0.00 0.00 42.32 4.70
261 262 2.494059 GCACATACGAATATGGTGCCT 58.506 47.619 0.00 0.00 42.32 4.75
262 263 1.194547 CGCACATACGAATATGGTGCC 59.805 52.381 9.19 0.00 42.32 5.01
263 264 2.131972 TCGCACATACGAATATGGTGC 58.868 47.619 0.00 0.00 42.32 5.01
272 273 1.717113 CGAACTTGTTCGCACATACGA 59.283 47.619 20.33 0.00 41.04 3.43
273 274 1.717113 TCGAACTTGTTCGCACATACG 59.283 47.619 25.31 5.97 43.55 3.06
274 275 2.472397 GCTCGAACTTGTTCGCACATAC 60.472 50.000 25.31 10.73 43.55 2.39
275 276 1.724623 GCTCGAACTTGTTCGCACATA 59.275 47.619 25.31 11.20 43.55 2.29
276 277 0.512952 GCTCGAACTTGTTCGCACAT 59.487 50.000 25.31 0.00 43.55 3.21
277 278 0.808060 TGCTCGAACTTGTTCGCACA 60.808 50.000 25.31 21.84 43.55 4.57
278 279 0.383124 GTGCTCGAACTTGTTCGCAC 60.383 55.000 25.31 23.06 43.55 5.34
279 280 1.495584 GGTGCTCGAACTTGTTCGCA 61.496 55.000 25.31 17.65 43.55 5.10
280 281 1.204312 GGTGCTCGAACTTGTTCGC 59.796 57.895 25.31 15.67 43.55 4.70
281 282 0.232303 GTGGTGCTCGAACTTGTTCG 59.768 55.000 24.49 24.49 45.09 3.95
282 283 1.583054 AGTGGTGCTCGAACTTGTTC 58.417 50.000 3.60 3.60 0.00 3.18
283 284 2.038387 AAGTGGTGCTCGAACTTGTT 57.962 45.000 0.00 0.00 33.01 2.83
284 285 1.940613 GAAAGTGGTGCTCGAACTTGT 59.059 47.619 0.40 0.00 34.46 3.16
285 286 1.939934 TGAAAGTGGTGCTCGAACTTG 59.060 47.619 0.40 0.00 34.46 3.16
286 287 2.325583 TGAAAGTGGTGCTCGAACTT 57.674 45.000 0.00 0.00 35.70 2.66
287 288 2.146342 CATGAAAGTGGTGCTCGAACT 58.854 47.619 0.00 0.00 0.00 3.01
288 289 1.873591 ACATGAAAGTGGTGCTCGAAC 59.126 47.619 0.00 0.00 0.00 3.95
289 290 2.254546 ACATGAAAGTGGTGCTCGAA 57.745 45.000 0.00 0.00 0.00 3.71
290 291 3.610040 ATACATGAAAGTGGTGCTCGA 57.390 42.857 0.00 0.00 0.00 4.04
291 292 4.685169 AAATACATGAAAGTGGTGCTCG 57.315 40.909 0.00 0.00 0.00 5.03
292 293 5.772521 ACAAAATACATGAAAGTGGTGCTC 58.227 37.500 0.00 0.00 0.00 4.26
293 294 5.789643 ACAAAATACATGAAAGTGGTGCT 57.210 34.783 0.00 0.00 0.00 4.40
294 295 7.145323 AGTTACAAAATACATGAAAGTGGTGC 58.855 34.615 0.00 0.00 0.00 5.01
295 296 9.528018 AAAGTTACAAAATACATGAAAGTGGTG 57.472 29.630 0.00 0.00 0.00 4.17
312 313 9.206870 CGGTCAGTTTAATACCTAAAGTTACAA 57.793 33.333 0.00 0.00 32.22 2.41
313 314 8.367156 ACGGTCAGTTTAATACCTAAAGTTACA 58.633 33.333 0.00 0.00 32.22 2.41
314 315 8.650714 CACGGTCAGTTTAATACCTAAAGTTAC 58.349 37.037 0.00 0.00 31.85 2.50
315 316 7.331687 GCACGGTCAGTTTAATACCTAAAGTTA 59.668 37.037 0.00 0.00 31.85 2.24
316 317 6.148315 GCACGGTCAGTTTAATACCTAAAGTT 59.852 38.462 0.00 0.00 31.85 2.66
317 318 5.640783 GCACGGTCAGTTTAATACCTAAAGT 59.359 40.000 0.00 0.00 34.08 2.66
318 319 5.640357 TGCACGGTCAGTTTAATACCTAAAG 59.360 40.000 0.00 0.00 29.93 1.85
319 320 5.549347 TGCACGGTCAGTTTAATACCTAAA 58.451 37.500 0.00 0.00 0.00 1.85
320 321 5.149973 TGCACGGTCAGTTTAATACCTAA 57.850 39.130 0.00 0.00 0.00 2.69
321 322 4.804868 TGCACGGTCAGTTTAATACCTA 57.195 40.909 0.00 0.00 0.00 3.08
322 323 3.688694 TGCACGGTCAGTTTAATACCT 57.311 42.857 0.00 0.00 0.00 3.08
323 324 3.998341 TCTTGCACGGTCAGTTTAATACC 59.002 43.478 0.00 0.00 0.00 2.73
324 325 4.449743 TGTCTTGCACGGTCAGTTTAATAC 59.550 41.667 0.00 0.00 0.00 1.89
325 326 4.633175 TGTCTTGCACGGTCAGTTTAATA 58.367 39.130 0.00 0.00 0.00 0.98
326 327 3.472652 TGTCTTGCACGGTCAGTTTAAT 58.527 40.909 0.00 0.00 0.00 1.40
327 328 2.907634 TGTCTTGCACGGTCAGTTTAA 58.092 42.857 0.00 0.00 0.00 1.52
328 329 2.605837 TGTCTTGCACGGTCAGTTTA 57.394 45.000 0.00 0.00 0.00 2.01
329 330 1.670811 CTTGTCTTGCACGGTCAGTTT 59.329 47.619 0.00 0.00 0.00 2.66
330 331 1.299541 CTTGTCTTGCACGGTCAGTT 58.700 50.000 0.00 0.00 0.00 3.16
331 332 0.178068 ACTTGTCTTGCACGGTCAGT 59.822 50.000 0.00 0.00 0.00 3.41
332 333 1.003545 CAACTTGTCTTGCACGGTCAG 60.004 52.381 0.00 0.00 0.00 3.51
333 334 1.013596 CAACTTGTCTTGCACGGTCA 58.986 50.000 0.00 0.00 0.00 4.02
334 335 1.261619 CTCAACTTGTCTTGCACGGTC 59.738 52.381 0.00 0.00 0.00 4.79
335 336 1.299541 CTCAACTTGTCTTGCACGGT 58.700 50.000 0.00 0.00 0.00 4.83
336 337 0.588252 CCTCAACTTGTCTTGCACGG 59.412 55.000 0.00 0.00 0.00 4.94
337 338 0.040958 GCCTCAACTTGTCTTGCACG 60.041 55.000 0.00 0.00 0.00 5.34
338 339 1.024271 TGCCTCAACTTGTCTTGCAC 58.976 50.000 0.00 0.00 0.00 4.57
339 340 1.024271 GTGCCTCAACTTGTCTTGCA 58.976 50.000 0.00 0.00 0.00 4.08
340 341 0.312102 GGTGCCTCAACTTGTCTTGC 59.688 55.000 0.00 0.00 0.00 4.01
341 342 1.876156 GAGGTGCCTCAACTTGTCTTG 59.124 52.381 13.00 0.00 42.31 3.02
342 343 1.202818 GGAGGTGCCTCAACTTGTCTT 60.203 52.381 18.75 0.00 44.40 3.01
343 344 0.398318 GGAGGTGCCTCAACTTGTCT 59.602 55.000 18.75 0.00 44.40 3.41
344 345 0.108585 TGGAGGTGCCTCAACTTGTC 59.891 55.000 18.75 1.72 44.40 3.18
345 346 0.109342 CTGGAGGTGCCTCAACTTGT 59.891 55.000 18.75 0.00 44.40 3.16
346 347 1.239968 GCTGGAGGTGCCTCAACTTG 61.240 60.000 18.75 5.89 44.40 3.16
347 348 1.073897 GCTGGAGGTGCCTCAACTT 59.926 57.895 18.75 0.00 44.40 2.66
348 349 2.753029 GCTGGAGGTGCCTCAACT 59.247 61.111 18.75 0.00 44.40 3.16
349 350 2.167398 TACGCTGGAGGTGCCTCAAC 62.167 60.000 18.75 7.29 44.40 3.18
350 351 1.264749 ATACGCTGGAGGTGCCTCAA 61.265 55.000 18.75 7.81 44.40 3.02
351 352 1.264749 AATACGCTGGAGGTGCCTCA 61.265 55.000 18.75 5.60 44.40 3.86
352 353 0.107654 AAATACGCTGGAGGTGCCTC 60.108 55.000 9.66 9.66 42.04 4.70
353 354 1.200519 TAAATACGCTGGAGGTGCCT 58.799 50.000 0.00 0.00 37.63 4.75
354 355 1.669265 GTTAAATACGCTGGAGGTGCC 59.331 52.381 0.00 0.00 37.10 5.01
355 356 2.608090 GAGTTAAATACGCTGGAGGTGC 59.392 50.000 0.00 0.00 0.00 5.01
356 357 4.124851 AGAGTTAAATACGCTGGAGGTG 57.875 45.455 0.00 0.00 35.41 4.00
357 358 4.820894 AAGAGTTAAATACGCTGGAGGT 57.179 40.909 0.00 0.00 36.96 3.85
358 359 6.496338 AAAAAGAGTTAAATACGCTGGAGG 57.504 37.500 0.00 0.00 36.96 4.30
359 360 8.025243 TGTAAAAAGAGTTAAATACGCTGGAG 57.975 34.615 0.00 0.00 36.96 3.86
360 361 7.966246 TGTAAAAAGAGTTAAATACGCTGGA 57.034 32.000 0.00 0.00 36.96 3.86
379 380 9.173021 CCAAACAGATCACACCTATATTGTAAA 57.827 33.333 0.00 0.00 0.00 2.01
380 381 8.325787 ACCAAACAGATCACACCTATATTGTAA 58.674 33.333 0.00 0.00 0.00 2.41
381 382 7.768582 CACCAAACAGATCACACCTATATTGTA 59.231 37.037 0.00 0.00 0.00 2.41
382 383 6.599244 CACCAAACAGATCACACCTATATTGT 59.401 38.462 0.00 0.00 0.00 2.71
383 384 6.038603 CCACCAAACAGATCACACCTATATTG 59.961 42.308 0.00 0.00 0.00 1.90
384 385 6.069673 TCCACCAAACAGATCACACCTATATT 60.070 38.462 0.00 0.00 0.00 1.28
385 386 5.428457 TCCACCAAACAGATCACACCTATAT 59.572 40.000 0.00 0.00 0.00 0.86
386 387 4.780554 TCCACCAAACAGATCACACCTATA 59.219 41.667 0.00 0.00 0.00 1.31
387 388 3.587061 TCCACCAAACAGATCACACCTAT 59.413 43.478 0.00 0.00 0.00 2.57
388 389 2.976185 TCCACCAAACAGATCACACCTA 59.024 45.455 0.00 0.00 0.00 3.08
389 390 1.774254 TCCACCAAACAGATCACACCT 59.226 47.619 0.00 0.00 0.00 4.00
390 391 2.270352 TCCACCAAACAGATCACACC 57.730 50.000 0.00 0.00 0.00 4.16
391 392 4.336433 CCATATCCACCAAACAGATCACAC 59.664 45.833 0.00 0.00 0.00 3.82
392 393 4.227073 TCCATATCCACCAAACAGATCACA 59.773 41.667 0.00 0.00 0.00 3.58
393 394 4.780815 TCCATATCCACCAAACAGATCAC 58.219 43.478 0.00 0.00 0.00 3.06
394 395 5.132480 TCATCCATATCCACCAAACAGATCA 59.868 40.000 0.00 0.00 0.00 2.92
395 396 5.624159 TCATCCATATCCACCAAACAGATC 58.376 41.667 0.00 0.00 0.00 2.75
396 397 5.651612 TCATCCATATCCACCAAACAGAT 57.348 39.130 0.00 0.00 0.00 2.90
397 398 5.651612 ATCATCCATATCCACCAAACAGA 57.348 39.130 0.00 0.00 0.00 3.41
398 399 6.944290 ACATATCATCCATATCCACCAAACAG 59.056 38.462 0.00 0.00 0.00 3.16
399 400 6.851318 ACATATCATCCATATCCACCAAACA 58.149 36.000 0.00 0.00 0.00 2.83
400 401 7.231317 ACAACATATCATCCATATCCACCAAAC 59.769 37.037 0.00 0.00 0.00 2.93
401 402 7.296856 ACAACATATCATCCATATCCACCAAA 58.703 34.615 0.00 0.00 0.00 3.28
402 403 6.851318 ACAACATATCATCCATATCCACCAA 58.149 36.000 0.00 0.00 0.00 3.67
403 404 6.452757 ACAACATATCATCCATATCCACCA 57.547 37.500 0.00 0.00 0.00 4.17
404 405 6.151648 CCAACAACATATCATCCATATCCACC 59.848 42.308 0.00 0.00 0.00 4.61
405 406 6.151648 CCCAACAACATATCATCCATATCCAC 59.848 42.308 0.00 0.00 0.00 4.02
406 407 6.247676 CCCAACAACATATCATCCATATCCA 58.752 40.000 0.00 0.00 0.00 3.41
407 408 5.653769 CCCCAACAACATATCATCCATATCC 59.346 44.000 0.00 0.00 0.00 2.59
408 409 5.126061 GCCCCAACAACATATCATCCATATC 59.874 44.000 0.00 0.00 0.00 1.63
409 410 5.018809 GCCCCAACAACATATCATCCATAT 58.981 41.667 0.00 0.00 0.00 1.78
410 411 4.141065 TGCCCCAACAACATATCATCCATA 60.141 41.667 0.00 0.00 0.00 2.74
411 412 3.233507 GCCCCAACAACATATCATCCAT 58.766 45.455 0.00 0.00 0.00 3.41
412 413 2.024560 TGCCCCAACAACATATCATCCA 60.025 45.455 0.00 0.00 0.00 3.41
413 414 2.665165 TGCCCCAACAACATATCATCC 58.335 47.619 0.00 0.00 0.00 3.51
414 415 4.942761 AATGCCCCAACAACATATCATC 57.057 40.909 0.00 0.00 0.00 2.92
415 416 4.715792 TCAAATGCCCCAACAACATATCAT 59.284 37.500 0.00 0.00 0.00 2.45
416 417 4.092279 TCAAATGCCCCAACAACATATCA 58.908 39.130 0.00 0.00 0.00 2.15
417 418 4.734398 TCAAATGCCCCAACAACATATC 57.266 40.909 0.00 0.00 0.00 1.63
418 419 5.189342 TGAATCAAATGCCCCAACAACATAT 59.811 36.000 0.00 0.00 0.00 1.78
419 420 4.529769 TGAATCAAATGCCCCAACAACATA 59.470 37.500 0.00 0.00 0.00 2.29
420 421 3.327172 TGAATCAAATGCCCCAACAACAT 59.673 39.130 0.00 0.00 0.00 2.71
421 422 2.702478 TGAATCAAATGCCCCAACAACA 59.298 40.909 0.00 0.00 0.00 3.33
422 423 3.399440 TGAATCAAATGCCCCAACAAC 57.601 42.857 0.00 0.00 0.00 3.32
423 424 3.581770 TCATGAATCAAATGCCCCAACAA 59.418 39.130 0.00 0.00 0.00 2.83
424 425 3.171528 TCATGAATCAAATGCCCCAACA 58.828 40.909 0.00 0.00 0.00 3.33
425 426 3.891422 TCATGAATCAAATGCCCCAAC 57.109 42.857 0.00 0.00 0.00 3.77
426 427 4.904895 TTTCATGAATCAAATGCCCCAA 57.095 36.364 9.40 0.00 0.00 4.12
427 428 5.438698 AATTTCATGAATCAAATGCCCCA 57.561 34.783 9.40 0.00 0.00 4.96
428 429 6.374894 TCAAAATTTCATGAATCAAATGCCCC 59.625 34.615 9.40 0.00 0.00 5.80
429 430 7.380431 TCAAAATTTCATGAATCAAATGCCC 57.620 32.000 9.40 0.00 0.00 5.36
430 431 8.508875 AGTTCAAAATTTCATGAATCAAATGCC 58.491 29.630 9.40 0.00 37.82 4.40
431 432 9.537848 GAGTTCAAAATTTCATGAATCAAATGC 57.462 29.630 9.40 0.00 37.82 3.56
436 437 8.714179 GCATTGAGTTCAAAATTTCATGAATCA 58.286 29.630 9.40 3.78 39.55 2.57
437 438 8.714179 TGCATTGAGTTCAAAATTTCATGAATC 58.286 29.630 9.40 1.00 39.55 2.52
438 439 8.610248 TGCATTGAGTTCAAAATTTCATGAAT 57.390 26.923 9.40 0.00 39.55 2.57
439 440 8.499967 CATGCATTGAGTTCAAAATTTCATGAA 58.500 29.630 3.38 3.38 39.55 2.57
440 441 7.873505 TCATGCATTGAGTTCAAAATTTCATGA 59.126 29.630 0.00 15.48 39.55 3.07
441 442 8.024146 TCATGCATTGAGTTCAAAATTTCATG 57.976 30.769 0.00 8.13 39.55 3.07
442 443 8.251750 CTCATGCATTGAGTTCAAAATTTCAT 57.748 30.769 14.42 0.00 45.79 2.57
443 444 7.646446 CTCATGCATTGAGTTCAAAATTTCA 57.354 32.000 14.42 0.00 45.79 2.69
456 457 5.711506 AGGTCACAAAATACTCATGCATTGA 59.288 36.000 0.00 0.00 0.00 2.57
457 458 5.957798 AGGTCACAAAATACTCATGCATTG 58.042 37.500 0.00 0.00 0.00 2.82
458 459 6.594788 AAGGTCACAAAATACTCATGCATT 57.405 33.333 0.00 0.00 0.00 3.56
459 460 6.435277 AGAAAGGTCACAAAATACTCATGCAT 59.565 34.615 0.00 0.00 0.00 3.96
460 461 5.769662 AGAAAGGTCACAAAATACTCATGCA 59.230 36.000 0.00 0.00 0.00 3.96
461 462 6.259550 AGAAAGGTCACAAAATACTCATGC 57.740 37.500 0.00 0.00 0.00 4.06
462 463 7.115378 GCAAAGAAAGGTCACAAAATACTCATG 59.885 37.037 0.00 0.00 0.00 3.07
463 464 7.014615 AGCAAAGAAAGGTCACAAAATACTCAT 59.985 33.333 0.00 0.00 0.00 2.90
464 465 6.321181 AGCAAAGAAAGGTCACAAAATACTCA 59.679 34.615 0.00 0.00 0.00 3.41
465 466 6.739112 AGCAAAGAAAGGTCACAAAATACTC 58.261 36.000 0.00 0.00 0.00 2.59
466 467 6.715347 AGCAAAGAAAGGTCACAAAATACT 57.285 33.333 0.00 0.00 0.00 2.12
467 468 6.582672 GCTAGCAAAGAAAGGTCACAAAATAC 59.417 38.462 10.63 0.00 0.00 1.89
468 469 6.490040 AGCTAGCAAAGAAAGGTCACAAAATA 59.510 34.615 18.83 0.00 0.00 1.40
469 470 5.302823 AGCTAGCAAAGAAAGGTCACAAAAT 59.697 36.000 18.83 0.00 0.00 1.82
470 471 4.644685 AGCTAGCAAAGAAAGGTCACAAAA 59.355 37.500 18.83 0.00 0.00 2.44
471 472 4.036734 CAGCTAGCAAAGAAAGGTCACAAA 59.963 41.667 18.83 0.00 0.00 2.83
472 473 3.565482 CAGCTAGCAAAGAAAGGTCACAA 59.435 43.478 18.83 0.00 0.00 3.33
473 474 3.141398 CAGCTAGCAAAGAAAGGTCACA 58.859 45.455 18.83 0.00 0.00 3.58
474 475 2.485814 CCAGCTAGCAAAGAAAGGTCAC 59.514 50.000 18.83 0.00 0.00 3.67
475 476 2.106511 ACCAGCTAGCAAAGAAAGGTCA 59.893 45.455 18.83 0.00 0.00 4.02
476 477 2.784347 ACCAGCTAGCAAAGAAAGGTC 58.216 47.619 18.83 0.00 0.00 3.85
477 478 2.959465 ACCAGCTAGCAAAGAAAGGT 57.041 45.000 18.83 9.57 0.00 3.50
478 479 5.904362 ATTAACCAGCTAGCAAAGAAAGG 57.096 39.130 18.83 8.95 0.00 3.11
501 502 9.289782 GGGCAAAGAAATACTGACAAGATATAT 57.710 33.333 0.00 0.00 0.00 0.86
502 503 8.271458 TGGGCAAAGAAATACTGACAAGATATA 58.729 33.333 0.00 0.00 0.00 0.86
503 504 7.067494 GTGGGCAAAGAAATACTGACAAGATAT 59.933 37.037 0.00 0.00 0.00 1.63
504 505 6.374333 GTGGGCAAAGAAATACTGACAAGATA 59.626 38.462 0.00 0.00 0.00 1.98
505 506 5.183904 GTGGGCAAAGAAATACTGACAAGAT 59.816 40.000 0.00 0.00 0.00 2.40
506 507 4.518970 GTGGGCAAAGAAATACTGACAAGA 59.481 41.667 0.00 0.00 0.00 3.02
507 508 4.520492 AGTGGGCAAAGAAATACTGACAAG 59.480 41.667 0.00 0.00 0.00 3.16
508 509 4.469657 AGTGGGCAAAGAAATACTGACAA 58.530 39.130 0.00 0.00 0.00 3.18
509 510 4.098914 AGTGGGCAAAGAAATACTGACA 57.901 40.909 0.00 0.00 0.00 3.58
510 511 4.518970 TCAAGTGGGCAAAGAAATACTGAC 59.481 41.667 0.00 0.00 0.00 3.51
511 512 4.724399 TCAAGTGGGCAAAGAAATACTGA 58.276 39.130 0.00 0.00 0.00 3.41
512 513 5.452078 TTCAAGTGGGCAAAGAAATACTG 57.548 39.130 0.00 0.00 0.00 2.74
513 514 6.267471 TCAATTCAAGTGGGCAAAGAAATACT 59.733 34.615 0.00 0.00 0.00 2.12
514 515 6.454795 TCAATTCAAGTGGGCAAAGAAATAC 58.545 36.000 0.00 0.00 0.00 1.89
515 516 6.662865 TCAATTCAAGTGGGCAAAGAAATA 57.337 33.333 0.00 0.00 0.00 1.40
516 517 5.549742 TCAATTCAAGTGGGCAAAGAAAT 57.450 34.783 0.00 0.00 0.00 2.17
517 518 5.549742 ATCAATTCAAGTGGGCAAAGAAA 57.450 34.783 0.00 0.00 0.00 2.52
518 519 5.299148 CAATCAATTCAAGTGGGCAAAGAA 58.701 37.500 0.00 0.00 0.00 2.52
519 520 4.800249 GCAATCAATTCAAGTGGGCAAAGA 60.800 41.667 0.00 0.00 0.00 2.52
520 521 3.434299 GCAATCAATTCAAGTGGGCAAAG 59.566 43.478 0.00 0.00 0.00 2.77
521 522 3.181457 TGCAATCAATTCAAGTGGGCAAA 60.181 39.130 0.00 0.00 0.00 3.68
522 523 2.367894 TGCAATCAATTCAAGTGGGCAA 59.632 40.909 0.00 0.00 0.00 4.52
523 524 1.969208 TGCAATCAATTCAAGTGGGCA 59.031 42.857 0.00 0.00 0.00 5.36
524 525 2.747396 TGCAATCAATTCAAGTGGGC 57.253 45.000 0.00 0.00 0.00 5.36
548 549 6.817765 TTTCGGAATATGAGCAGTCTTTTT 57.182 33.333 0.00 0.00 0.00 1.94
549 550 6.817765 TTTTCGGAATATGAGCAGTCTTTT 57.182 33.333 0.00 0.00 0.00 2.27
550 551 6.678900 GCATTTTCGGAATATGAGCAGTCTTT 60.679 38.462 20.65 0.00 0.00 2.52
551 552 5.220931 GCATTTTCGGAATATGAGCAGTCTT 60.221 40.000 20.65 0.00 0.00 3.01
552 553 4.274459 GCATTTTCGGAATATGAGCAGTCT 59.726 41.667 20.65 0.00 0.00 3.24
553 554 4.531332 GCATTTTCGGAATATGAGCAGTC 58.469 43.478 20.65 3.02 0.00 3.51
554 555 3.316308 GGCATTTTCGGAATATGAGCAGT 59.684 43.478 20.65 0.00 0.00 4.40
555 556 3.607775 CGGCATTTTCGGAATATGAGCAG 60.608 47.826 20.65 7.12 0.00 4.24
556 557 2.290367 CGGCATTTTCGGAATATGAGCA 59.710 45.455 20.65 0.00 0.00 4.26
557 558 2.290641 ACGGCATTTTCGGAATATGAGC 59.709 45.455 20.65 9.28 0.00 4.26
558 559 4.552166 AACGGCATTTTCGGAATATGAG 57.448 40.909 20.65 15.86 0.00 2.90
559 560 4.439426 CCAAACGGCATTTTCGGAATATGA 60.439 41.667 20.65 0.00 0.00 2.15
560 561 3.796178 CCAAACGGCATTTTCGGAATATG 59.204 43.478 14.44 14.44 0.00 1.78
561 562 4.040445 CCAAACGGCATTTTCGGAATAT 57.960 40.909 0.00 0.00 0.00 1.28
562 563 3.495670 CCAAACGGCATTTTCGGAATA 57.504 42.857 0.00 0.00 0.00 1.75
563 564 2.362169 CCAAACGGCATTTTCGGAAT 57.638 45.000 0.00 0.00 0.00 3.01
564 565 3.875838 CCAAACGGCATTTTCGGAA 57.124 47.368 0.00 0.00 0.00 4.30
594 595 1.615883 ACTAGGATACCGAGCTGCATG 59.384 52.381 1.02 0.00 29.11 4.06
647 648 9.390795 CTAGCTTGAATACATGTCATTAAATGC 57.609 33.333 0.00 6.56 0.00 3.56
667 668 4.042062 TGTGGCATATATCCTTGCTAGCTT 59.958 41.667 17.23 0.00 38.88 3.74
672 673 2.550855 CGGTGTGGCATATATCCTTGCT 60.551 50.000 0.00 0.00 38.88 3.91
700 701 7.277098 TCCTTGAATGCTACTGTACGAAAATAC 59.723 37.037 0.00 0.00 0.00 1.89
710 711 3.615110 CGTCAGTCCTTGAATGCTACTGT 60.615 47.826 0.00 0.00 38.88 3.55
720 721 2.844946 TGCATTTTCGTCAGTCCTTGA 58.155 42.857 0.00 0.00 0.00 3.02
722 723 2.489329 CCATGCATTTTCGTCAGTCCTT 59.511 45.455 0.00 0.00 0.00 3.36
750 751 1.488527 GATCGATGGCACGTCTAACC 58.511 55.000 0.54 0.00 34.70 2.85
845 846 3.692101 GCTAGCTCATCGGCTTATCTCTA 59.308 47.826 7.70 0.00 42.97 2.43
866 867 1.133869 CGTTCGGATTCCAAACGGC 59.866 57.895 19.00 0.00 41.41 5.68
951 952 2.689983 GAGAGCTGAGAGGAGAAGAAGG 59.310 54.545 0.00 0.00 0.00 3.46
957 958 2.241941 ACTGATGAGAGCTGAGAGGAGA 59.758 50.000 0.00 0.00 0.00 3.71
1104 1105 0.672401 CGTTCGGCCCTTCTTTGCTA 60.672 55.000 0.00 0.00 0.00 3.49
1144 1145 0.866061 CTTACACTGTCGATCGGGCG 60.866 60.000 16.41 6.11 0.00 6.13
1152 1153 5.179368 ACATGGATGAAAACTTACACTGTCG 59.821 40.000 0.00 0.00 0.00 4.35
1172 1173 3.192001 CCATGGAACTTCTTGTGGACATG 59.808 47.826 5.56 0.00 35.99 3.21
1373 1376 2.314256 CGTAGCATGTCCAGCCATG 58.686 57.895 0.00 0.00 44.07 3.66
1432 1435 3.782244 GTGCTTGCTCAGTCCGCG 61.782 66.667 0.00 0.00 0.00 6.46
1472 1475 1.202580 ACCATGAGGCAGATAACGAGC 60.203 52.381 0.00 0.00 39.06 5.03
1476 1479 4.077300 TGATCACCATGAGGCAGATAAC 57.923 45.455 0.00 0.00 39.06 1.89
1478 1481 3.455543 TGTTGATCACCATGAGGCAGATA 59.544 43.478 0.00 0.00 39.06 1.98
1545 1548 1.137086 AGAACGGATAGCGTGCTTGAT 59.863 47.619 0.00 0.00 0.00 2.57
1554 1557 5.354054 TGTCTACGATTAGAACGGATAGC 57.646 43.478 0.00 0.00 36.03 2.97
1640 1643 5.424757 TGACCCATTAACGACCTAATCAAG 58.575 41.667 0.00 0.00 0.00 3.02
1721 1724 8.343366 GCATATAATCATACATTGATGAGCTGG 58.657 37.037 0.00 0.00 44.51 4.85
1744 1747 1.875157 CGTGTCCATCCGATGATGCAT 60.875 52.381 10.12 0.00 45.86 3.96
1776 1779 2.621055 TGTCAACATTTTTACGCTGGCT 59.379 40.909 0.00 0.00 0.00 4.75
1784 1787 9.645059 CTCTCTCTGACTATGTCAACATTTTTA 57.355 33.333 0.20 0.00 42.26 1.52
1829 1832 4.441495 CGTCCAGCAAGTAGATATCACCAA 60.441 45.833 5.32 0.00 0.00 3.67
1924 1927 2.855963 GCACGCGTTCTATTTACTGCTA 59.144 45.455 10.22 0.00 0.00 3.49
1926 1929 1.659098 AGCACGCGTTCTATTTACTGC 59.341 47.619 10.37 6.24 0.00 4.40
1943 1946 2.093658 CCGCTCCCTTCTAGTTTTAGCA 60.094 50.000 0.00 0.00 0.00 3.49
1947 1950 1.610886 GCACCGCTCCCTTCTAGTTTT 60.611 52.381 0.00 0.00 0.00 2.43
1995 1998 1.293498 GAGATGGTGTGCGGTGAGT 59.707 57.895 0.00 0.00 0.00 3.41
2006 2009 0.755686 GAAGGAGATGCCGAGATGGT 59.244 55.000 0.00 0.00 43.43 3.55
2099 2102 3.685139 TCTTGCTTGAATCCTCGACTT 57.315 42.857 0.00 0.00 0.00 3.01
2131 2134 3.822735 TCCTGTTCTTGCTTGAATCCTTG 59.177 43.478 0.00 0.00 0.00 3.61
2132 2135 4.077822 CTCCTGTTCTTGCTTGAATCCTT 58.922 43.478 0.00 0.00 0.00 3.36
2170 2173 6.773638 AGTGTGATACAGAGAGTTGGATTTT 58.226 36.000 0.00 0.00 0.00 1.82
2209 2212 6.382570 GGATCCCTACTGCTACAGATGAATAT 59.617 42.308 0.00 0.00 35.18 1.28
2219 2222 4.689612 TTCAATGGATCCCTACTGCTAC 57.310 45.455 9.90 0.00 0.00 3.58
2303 2306 3.181526 GCGCACTACAGATTGAACAGAAG 60.182 47.826 0.30 0.00 0.00 2.85
2321 2324 1.810853 CGATGTGATGAGGTGCGCA 60.811 57.895 5.66 5.66 0.00 6.09
2345 2348 2.573340 CTTTCCATGCCGGCCAAC 59.427 61.111 26.77 0.00 33.14 3.77
2347 2350 4.675161 TGCTTTCCATGCCGGCCA 62.675 61.111 26.77 12.96 33.14 5.36
2437 2440 8.603898 TTGGACTGAAATCCTAGATGTAACTA 57.396 34.615 0.00 0.00 39.75 2.24
2459 2462 4.813027 AGAATATGTTGCACAGCTTTTGG 58.187 39.130 0.00 0.00 0.00 3.28
2467 2470 3.719268 ACTGGGAGAATATGTTGCACA 57.281 42.857 0.00 0.00 0.00 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.