>input_sequence_77017
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------ATGGCGGCTTCTTCTTCCTCAGTTCGTTCCAGAGATAGAC
GCCAACACCTGCCGCTCATCATGTGCCCTGATTGCCAGGAGGTCAGGGTGGAGACAAACATCTGTAGCAAAGAAGGGCCG
AACGAGGGGAGGCGCTTCTACAAGCGCCCGATCGACAGTGTAAGTTTTCATCCATGTCCACAAGAAGTTCCATGGGAAAA
TCGATAAATGAAGTCTCACATTTTTGTTTGTGT--TTTTTGCGGCATGGGGCTGAGCAGGGCCCAGACAAGTGCGGCTGG
TTCAGGTGGGAAGATGTTTACGCCGGAATCATTCGGCGGAGGGAAGCTCGCCTGAGGTATGGAGACCCATACGGTGTCCA
AGGTTCGAGCCAAGGCATGGCTGGACATGCTACGCAGACGCAGCCGGAGCAGGCACCCGAGATCGTCAGGCAGCCGCGGA
CTGAGCAAGCACAGGCCAGGGGAGGCCGCGACTGGCTCGTTATCTGCCTCATGGTGATCAACATGATCTTCACCCTGACC
ATCCTTTCACGGGTGTGA--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------
>chr1A_1_TraesCS1A01G127800
GCGATGCAATACATAGAGTTCGACCTCAATATTTACTGAGCTATGTATGGCACGGTGGACAACCTTTGCGTACAATGCAA
TCTGTGACAATGAGGGTTCGATCCTGTATCACATTTTTTTCTAATTTCTAATTCATGAGATTTACATGCATGACTAAAAA
AAATATGAGGGGGTCTTGTAAAAAAATCCTCACGCTCGGGCCACCCAGCGCCTTCCAACTCTCAGCCATTGTGGGCTGGA
CGTTCATTCGGATACGGATGGAGGCACCATATTCGTATGTGCGAACAAGTTCGAGCACCACTTTCATGTATTTTGTAACT
TTAGGTATTAAACTGACCGTGCAAGACAAGTTGAGGCACCTCCAGCGTATTTAACTCTTTTTACAATATAGGTGTGATCT
GTTTGGTGGATATGGATGATATGTTGTTGGGGCATTTGATTCATGAAATTTTGAACTCAATGCATGAGTATTTTGTGACC
TTTCTTTGCTAGCTGGTTAATATATATCTTGTCAGTATTTCTTTGCCCACTTGAATTGATTGCAAAAAAAAAAGACTGCT
CATATTCCGAAAATGCCGTTTGGCGGACGAGCTCCATGCAGCTCGGTATCCTAGTCGTCTGTAATCGCATCTAGCAGCTG
CACCAACGCATTTAATGACATGTATTCAAGCTAGCAAGGATATATGCCACACCGTATTCTGTATTTTCGTACAGTAGCAT
TCAAGGACTGACGAAAATGCATGGCAGGCTGGTTAGACGTGCCATCGATCCACCCATTATGTGCATGCAGTGCTAGCAGC
TAATCCACTCACTGACGAACATGGGCAAGCTCACGCTCCCATGTTTAGAGATAAGCCGATGAGCTAGCCGTTTGGAATCC
GAACGTTGGGTCTGACGATCAGACCGTTGGGGAAATGCTCTATTTATACCGCCGGAGAACAGCAGCCTAATCCTTCTTCT
CCTCTCAGCTCTCATCAGTGAATAGCTTGGAAGCGCAGCAATGGCGGCTTCTTCTTCCTCAGTTCGTTCCAGAGATAGAC
GCCAACACCTGCCGCTCATCATGTGCCCTGATTGCCAGGAGGTCAGGGTGGAGACAAACATCTGTAGCAAAGAAGGGCCG
AACGAGGGGAGGCGCTTCTACAAGCGCCCGATCGACAGTGTAAGTTTTCATCCATGTCCACAAGAAGTTCCATGGGAAAA
TCGATAAATGAAGTCTCACATTTTTGTTTGTGT--TTTTTGCGGCATGGGGCTGAGCAGGGCCCAGACAAGTGCGGCTGG
TTCAGGTGGGAAGATGTTTACGCCGGAATCATTCGGCGGAGGGAAGCTCGCCTGAGGTATGGAGACCCATACGGTGTCCA
AGGTTCGAGCCAAGGCATGGCTGGACATGCTACGCAGACGCAGCCGGAGCAGGCACCCGAGATCGTCAGGCAGCCGCGGA
CTGAGCAAGCACAGGCCAGGGGAGGCCGCGACTGGCTCGTTATCTGCCTCATGGTGATCAACATGATCTTCACCCTGACC
ATCCTTTCACGGGTGTGATGAGCTACTATCAAGCACGCTATCCGTTCTAATCGTAGACATATGTTTTCCAATTATCCACT
GTAATCCTTTCCCTCTAGTTCTAGTTGCGAGTCACTGAGCCTCTTGATTAGGTCGTTAATGGGTCATCGAGTTAGCATGC
AAAAGCTTGTCAGTGTATGCTTCAAGTTTATGTTTATTAATAACCAGCTCATCAATGTATGATTATATGCATCATCGGAT
GGACACGCTAATCAGTCTAGCCAGCGTAAAAATGTTGACATAGTCAGAGAGAGGCCCCACTTTTTGCTTGATTGGTGATA
TCTACTTGCTGGACGTAGTAAATTGTGTTGACTAGTCAGGTCGGGTGTTAACTCTGTCGCCAACTGTGCACACAACCACC
ATCACCTAGCAGTAAATAGAACGCGTGCTAAAACTAGAAGGGAGCGGTGCGAGCCATCTCCCCTGCTTTTCTGCCTCACT
CACCGCACACCATCTCGGCATCTCCTTCCTCCCCCTACCAGCGCTGAAGCTTGCATTGTATCCATGGCACCAGCCACTTA
AGCAAACGGGTTCAGCCCTGCAAGTCGAGGATTCAAGCAAGAAGAGGAGGCAGCAAGGATTCAAGCAAGAACAGGAGGCA
GGTATGTAAAGGAAAATCCAACTCTCTGTATCACACTCGCATTTGCAAAAAATATTCATCTGTAGCAGTAGGGATCCATT
GAAATGCTCGAGTTTAGTACAGATTATTATAGAAAGCCATTTGATTTACCAGATCCATCTTGTATCTTCTGTTCAATCTG
TAGTGCGCACCTCATCACATCGGTGTCGTTGGCCGGCATGGAAAGCAATGTAGACCTAGAGGCGTCTGATTTACAGGTCA
CAGATAACTGGGAGTTCGCATCCGCCGTAGGCCCAGGCGTAGTTACATCTAGGATTTCAGTCCAAAAGCTGTGCAACATA
TTCTCCCAGTTTGGACAGTTCAAGAGGAAGTTGATAGCAGAGATTGGTTTGAAGGCGT-
>chr5A_567
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------CCGAAAATGCCGTTTGGCGGACGAGCTCTATGCAGCTCGGTATCCTAGTCGTCTATAATCGCATCTAGCAGCTG
CACCAACACATTTAATGACATGTATTCGAGCTGGCAAGGATATATGCCACACCGTATTCTATATTTTCGTGCAGTAGCAT
CCCAGGACTGACGAAAATGCATGGCAGGCTAGTTAGACGTGCCATCGATCCACCCATTATGTGCATGCAGTGCTAGCAGC
TAATCCACTCACTGACGAACATGGGCAAGCTCACGCTCCCATGTTCAGAGATAAGCCGATGAGCTAATCGTTTGGAATCC
GAACGTTGGGTCTGACGATCAGACCGTTGGGGAAATGCTCTATTTATACCGCCGGAGAACAGCAGCCTAATGCTTCTCCT
CCTCTCAGCTCTCATCAGTGAATAGCTTGGAATCGCAGCAATGGCGGCTTCTTCTTCCTCAGTTCGTTCCAGAGATAGAC
GCCAACACCTGCCGCTCATCATGTGCCCTGATTGCCAGGAGGTCAGGGTGGAGACAAACATCTGCAGCAAAGAAGGGCCG
AACGAGGGGAGGCGCTTCTACAAGTGCCCGATTGACAGTGTAAGTTTTCATCAATGTCCACAAGAAGTTCCATGGGAAAA
TCGATAAATGAAGTCTCACATTGTTGTTTGTGTTTTTTTTGTGGTATGGGGCTGAGCAGGGCCCAGACAAGTGCGGCTGG
TTCAGGTGGGAAGATGTTTACGCCGGAATCATTCGGCGGAGGGAAGCTCGCCTGAGGTATGGAGACCCATACGGTGTCCA
AGGTTCGAGCCAAGGTATGGCTGGACATGCTACGCAGACGCAGCCGGAGCAGGCACCCGAGATCGTCAGGCAGCAGCGGA
CTGAACAAGCACAGGCCAGGGGAGGCCGCGACTGTCTCTTCATCTGCCTCATGGTGATCAACATGATCTTCACCCTGACC
ATCCTTTCACGGGTGTGATGAGCTACTGTCAAGCACCCTATCCGTTCTAATCGTAGACATATGTTTTCCAATTATCCACT
GTAATCCTTTCCCTCTAGTTCTAGTTGCGAGTCACTGAGCCTGTTGATTAGGTCGTTAATGGGTCATCGAGTTAGCATGC
AAAAGCTTGTCAGTGTATGCTTCAAGTTTATGTTAATTAATAATCAGCTCATCAATGTATGATTATCTGCATCATCGGAT
GGACACGCTAATCAGTCTGGCCAGCGGAAAAATGTTGACATAGTCAGAGAGAGGCCCCACTTTTTGCTTGACTGGTGATA
TCTACTTGCTGGACGTAGTAAATTGTGTTGACTAGTCAGGTCGGGTGTTAACTCTGTCGCCAACTGTGCACACAACCACC
ATCACCCAACAGTAAATAGAACGCGCGCTGAAACTAGAAGGGAGCGGTGCGAGCCATCTCCCCTGCTTTTCTGCCTCGCT
CACCGCACGCCATCTCGGCATCTCCTTCCTCCCCC-ACCAGCGCTGAAGCTTGCATCGTATCCATGGCACCAGCCACTTA
AGCAAACGGGTTCAGCCCTGCGAGTCGAGGATTCAAGCAAGAAGAGGAGGCAGTGAGGATTCAAGCAAGAACAGGAGGCA
GGTATGTAAAGGCAAATCCAACTCTCTGTATCACACTCGCAGTTGCAAAAACTATTCATCTATAGCAGTAGGGATCCATT
GAAATGCTCGAGTTTAGTACGGATTATTATAGAAAGCCATTTGATTTACCAGATCCATCTTGTATTTTCTGTTCAATCTG
TAGCGCGCACCTCATCACATCGGCGTCTTCGGCCGGCATGGAAAGCAATGTAGACCTAGAGGCGTCTGATTTACAGGTCA
CAGATAACTGGGAGTTCGCATCCGCCGTAGGCCCAGGCGCAGTTACATCTAGGATTTCAGTGCAAAAGCCGTGCAACATA
TTCTCCCAGTTTGGACAGTTCAAGAGGAAGTTGATAGCAGAGATTGGTTTTGAAGGCGT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS----------------------------S-------------------------S-------------------
-------S-------------------S----S---------------------------S---------S---------
S-S---------------------------S-------------------------------------------------
---------------------------------------------S--------------------SS------------
-----------------------------------------------------------------------S-----S--
--------------------------------S-----------------------------------------------
----------------------------------------------------------------S---------------
------------------------S-------S-------------------S---------------------------
----------------------S------------------S--S-----------------------------------
--------------------------------------------------------------------------------
---------------S----------------------------------------------------------S-----
----S-----------------------------S---S-S---------------------------------------
---------------------------S--------S-------------------------------------------
------------------------------------------S-------------------------------------
----------------------------------S--------S----------------------S-------------
------------------S-------S--------------------------------------------S--------
--------------------------------------------------------------------------------
------S-S----------------S---S-----------------------------------------------S--
--------S--------------------------S--------------------S-----------------------
---------------------S-------------------------------SS-------------------------
------------S----------------------------S---------S---------S------------------
--------------------S--------------------------------------------S--------------
---S-------------------S---S-S--------------------------------------------------
---------------------------------------S---------------------S-------S----------
--------------------------------------------------SS-S-SSS-
>forward_229
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------GCCTTCCAACTCTCAGCCAT-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------
>reverse_1105
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------TAGCAAAGAAGGGCCG
AACG----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------
>forward_247
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------ATTGTGGGCTGGA
CGTTCAT-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------
>reverse_2009
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------ACCATCTCGGCATCTCCTTC----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------
