Multiple sequence alignment - TraesCS1A01G122900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G122900 chr1A 100.000 3563 0 0 1 3563 140960020 140963582 0.000000e+00 6580.0
1 TraesCS1A01G122900 chr1A 100.000 44 0 0 2971 3014 133174415 133174458 8.200000e-12 82.4
2 TraesCS1A01G122900 chr1D 93.843 3037 89 19 2 2970 126471951 126474957 0.000000e+00 4482.0
3 TraesCS1A01G122900 chr1D 85.106 188 26 2 3067 3252 126475019 126475206 1.310000e-44 191.0
4 TraesCS1A01G122900 chr1D 100.000 44 0 0 2971 3014 375946083 375946040 8.200000e-12 82.4
5 TraesCS1A01G122900 chr1D 100.000 44 0 0 2971 3014 375946408 375946451 8.200000e-12 82.4
6 TraesCS1A01G122900 chr1B 94.033 3000 79 28 2 2931 190629409 190632378 0.000000e+00 4457.0
7 TraesCS1A01G122900 chr1B 89.928 139 14 0 3420 3558 190632686 190632824 2.830000e-41 180.0
8 TraesCS1A01G122900 chr1B 87.313 134 12 1 3180 3313 190633265 190633393 7.970000e-32 148.0
9 TraesCS1A01G122900 chr3B 76.573 747 122 40 970 1675 104970474 104971208 9.400000e-96 361.0
10 TraesCS1A01G122900 chr3B 77.452 683 92 33 1865 2522 104971433 104972078 5.660000e-93 351.0
11 TraesCS1A01G122900 chr3A 76.478 761 118 45 970 1679 73512500 73513250 1.220000e-94 357.0
12 TraesCS1A01G122900 chr3A 76.017 688 99 35 1865 2522 73513467 73514118 2.690000e-76 296.0
13 TraesCS1A01G122900 chr3D 77.467 679 93 28 1865 2522 63779997 63780636 5.660000e-93 351.0
14 TraesCS1A01G122900 chr3D 75.712 737 118 46 994 1679 63779054 63779780 2.670000e-81 313.0
15 TraesCS1A01G122900 chr7D 94.828 174 8 1 1280 1453 634158524 634158352 1.630000e-68 270.0
16 TraesCS1A01G122900 chr4D 94.828 174 8 1 1280 1453 14673543 14673715 1.630000e-68 270.0
17 TraesCS1A01G122900 chr4D 79.856 139 22 6 1521 1656 446652937 446652802 2.930000e-16 97.1
18 TraesCS1A01G122900 chr6D 84.444 135 21 0 3429 3563 2516523 2516657 2.230000e-27 134.0
19 TraesCS1A01G122900 chr6D 100.000 44 0 0 2971 3014 384444275 384444232 8.200000e-12 82.4
20 TraesCS1A01G122900 chr6D 90.741 54 5 0 3445 3498 341150307 341150254 4.930000e-09 73.1
21 TraesCS1A01G122900 chr4A 83.721 129 19 1 3432 3558 11737213 11737341 1.740000e-23 121.0
22 TraesCS1A01G122900 chr7B 82.677 127 22 0 3431 3557 199860084 199859958 2.910000e-21 113.0
23 TraesCS1A01G122900 chr4B 79.856 139 22 6 1521 1656 558727281 558727146 2.930000e-16 97.1
24 TraesCS1A01G122900 chr6A 100.000 45 0 0 2971 3015 30376516 30376472 2.280000e-12 84.2
25 TraesCS1A01G122900 chr6A 100.000 44 0 0 2971 3014 463527609 463527652 8.200000e-12 82.4
26 TraesCS1A01G122900 chr6A 100.000 44 0 0 2971 3014 578665437 578665394 8.200000e-12 82.4
27 TraesCS1A01G122900 chr5D 97.917 48 0 1 2971 3018 84787204 84787158 8.200000e-12 82.4
28 TraesCS1A01G122900 chr5D 90.566 53 5 0 3446 3498 503630946 503630998 1.770000e-08 71.3
29 TraesCS1A01G122900 chr2A 100.000 44 0 0 2971 3014 80283082 80283125 8.200000e-12 82.4
30 TraesCS1A01G122900 chr5A 93.182 44 3 0 3453 3496 565530425 565530468 8.260000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G122900 chr1A 140960020 140963582 3562 False 6580.0 6580 100.000000 1 3563 1 chr1A.!!$F2 3562
1 TraesCS1A01G122900 chr1D 126471951 126475206 3255 False 2336.5 4482 89.474500 2 3252 2 chr1D.!!$F2 3250
2 TraesCS1A01G122900 chr1B 190629409 190633393 3984 False 1595.0 4457 90.424667 2 3558 3 chr1B.!!$F1 3556
3 TraesCS1A01G122900 chr3B 104970474 104972078 1604 False 356.0 361 77.012500 970 2522 2 chr3B.!!$F1 1552
4 TraesCS1A01G122900 chr3A 73512500 73514118 1618 False 326.5 357 76.247500 970 2522 2 chr3A.!!$F1 1552
5 TraesCS1A01G122900 chr3D 63779054 63780636 1582 False 332.0 351 76.589500 994 2522 2 chr3D.!!$F1 1528

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
939 994 0.321122 CGCTTCCCACTGCTCTCTTT 60.321 55.000 0.00 0.00 0.00 2.52 F
1038 1097 1.152312 GATCCGGGGCTTCCTAGGA 60.152 63.158 7.62 7.62 39.91 2.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1899 2087 0.743701 ACTCGATACTCGCCGACAGT 60.744 55.0 0.0 0.0 40.21 3.55 R
2971 3189 0.040157 CCTTTGCATGTCACCGTGTG 60.040 55.0 0.0 0.0 34.45 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
517 557 5.278957 CCGGCCAGGGATAATAAAATGAAAG 60.279 44.000 2.24 0.00 35.97 2.62
520 560 7.381323 GGCCAGGGATAATAAAATGAAAGATG 58.619 38.462 0.00 0.00 0.00 2.90
545 588 4.832823 TCCATTGTTTTCCTTCTTTCCTCC 59.167 41.667 0.00 0.00 0.00 4.30
546 589 4.835056 CCATTGTTTTCCTTCTTTCCTCCT 59.165 41.667 0.00 0.00 0.00 3.69
547 590 5.047731 CCATTGTTTTCCTTCTTTCCTCCTC 60.048 44.000 0.00 0.00 0.00 3.71
548 591 4.788925 TGTTTTCCTTCTTTCCTCCTCA 57.211 40.909 0.00 0.00 0.00 3.86
549 592 4.461198 TGTTTTCCTTCTTTCCTCCTCAC 58.539 43.478 0.00 0.00 0.00 3.51
550 593 3.402628 TTTCCTTCTTTCCTCCTCACG 57.597 47.619 0.00 0.00 0.00 4.35
551 594 2.011122 TCCTTCTTTCCTCCTCACGT 57.989 50.000 0.00 0.00 0.00 4.49
552 595 3.165087 TCCTTCTTTCCTCCTCACGTA 57.835 47.619 0.00 0.00 0.00 3.57
553 596 2.824341 TCCTTCTTTCCTCCTCACGTAC 59.176 50.000 0.00 0.00 0.00 3.67
554 597 2.561419 CCTTCTTTCCTCCTCACGTACA 59.439 50.000 0.00 0.00 0.00 2.90
561 604 5.471556 TTCCTCCTCACGTACAAAACATA 57.528 39.130 0.00 0.00 0.00 2.29
565 608 6.370442 TCCTCCTCACGTACAAAACATATTTG 59.630 38.462 0.00 0.00 35.64 2.32
575 618 7.201316 CGTACAAAACATATTTGCAAGTAAGGC 60.201 37.037 5.71 0.00 32.93 4.35
604 647 2.566724 TGCCAAAAATGAGTTCCCATCC 59.433 45.455 0.00 0.00 0.00 3.51
605 648 2.566724 GCCAAAAATGAGTTCCCATCCA 59.433 45.455 0.00 0.00 0.00 3.41
606 649 3.198417 GCCAAAAATGAGTTCCCATCCAT 59.802 43.478 0.00 0.00 0.00 3.41
607 650 4.681512 GCCAAAAATGAGTTCCCATCCATC 60.682 45.833 0.00 0.00 0.00 3.51
608 651 4.141869 CCAAAAATGAGTTCCCATCCATCC 60.142 45.833 0.00 0.00 0.00 3.51
740 783 2.618053 CTTCCTTGGACGTCGCTAATT 58.382 47.619 9.92 0.00 0.00 1.40
793 844 1.880941 AATTAACGAGAGAGGGCCCT 58.119 50.000 29.18 29.18 0.00 5.19
829 880 2.916181 ATCGCGTAGGTAGCCCCC 60.916 66.667 5.77 0.00 0.00 5.40
939 994 0.321122 CGCTTCCCACTGCTCTCTTT 60.321 55.000 0.00 0.00 0.00 2.52
951 1006 3.657634 TGCTCTCTTTGTTCACTAGCAG 58.342 45.455 0.00 0.00 33.84 4.24
1038 1097 1.152312 GATCCGGGGCTTCCTAGGA 60.152 63.158 7.62 7.62 39.91 2.94
1104 1181 2.262292 CCAACCAATGCCAAGCGG 59.738 61.111 0.00 0.00 0.00 5.52
1747 1904 6.073222 GGCCATCAATTAAACTACTCCGTATG 60.073 42.308 0.00 0.00 0.00 2.39
1911 2099 3.432588 CGGAGACTGTCGGCGAGT 61.433 66.667 11.20 5.45 0.00 4.18
2239 2430 4.410400 CCACCCCGACCAAGAGCC 62.410 72.222 0.00 0.00 0.00 4.70
2487 2702 0.179067 TCAACTTCAAGACGGCCGTT 60.179 50.000 34.65 19.39 0.00 4.44
2584 2799 1.477700 CTGCTCTGCTCTGTTCTAGCT 59.522 52.381 0.00 0.00 40.73 3.32
2598 2813 3.844577 TCTAGCTACTTCACACGGTTC 57.155 47.619 0.00 0.00 0.00 3.62
2700 2915 4.183101 CCTGCTTTCTTTTTGTTCTTGCA 58.817 39.130 0.00 0.00 0.00 4.08
2703 2918 6.348621 TGCTTTCTTTTTGTTCTTGCATTC 57.651 33.333 0.00 0.00 0.00 2.67
2704 2919 5.873712 TGCTTTCTTTTTGTTCTTGCATTCA 59.126 32.000 0.00 0.00 0.00 2.57
2826 3044 6.316140 TCATAGCGCACTTTGATGTAAATTCT 59.684 34.615 11.47 0.00 30.07 2.40
2837 3055 9.578439 CTTTGATGTAAATTCTTTCTCAATCCC 57.422 33.333 0.00 0.00 0.00 3.85
2867 3085 4.247267 TCCATTACGACTCGTTCTGTTT 57.753 40.909 9.84 0.00 41.54 2.83
2899 3117 5.463286 TGCTCTGCATTATGTTTCTTGTTG 58.537 37.500 0.00 0.00 31.71 3.33
2904 3122 7.315142 TCTGCATTATGTTTCTTGTTGATTCC 58.685 34.615 0.00 0.00 0.00 3.01
2927 3145 1.574702 CTTCAGCCGGGTTTCGTTCC 61.575 60.000 1.64 0.00 37.11 3.62
2957 3175 1.429021 CATCGTTGGAATGTGGGCG 59.571 57.895 0.00 0.00 0.00 6.13
2970 3188 1.306141 TGGGCGTCAATCCCTCTCT 60.306 57.895 0.00 0.00 44.23 3.10
2971 3189 1.330655 TGGGCGTCAATCCCTCTCTC 61.331 60.000 0.00 0.00 44.23 3.20
2972 3190 1.330655 GGGCGTCAATCCCTCTCTCA 61.331 60.000 0.00 0.00 40.66 3.27
2974 3192 0.532573 GCGTCAATCCCTCTCTCACA 59.467 55.000 0.00 0.00 0.00 3.58
2975 3193 1.737363 GCGTCAATCCCTCTCTCACAC 60.737 57.143 0.00 0.00 0.00 3.82
2976 3194 1.468224 CGTCAATCCCTCTCTCACACG 60.468 57.143 0.00 0.00 0.00 4.49
2977 3195 1.134965 GTCAATCCCTCTCTCACACGG 60.135 57.143 0.00 0.00 0.00 4.94
2979 3197 0.898320 AATCCCTCTCTCACACGGTG 59.102 55.000 6.58 6.58 34.45 4.94
2980 3198 0.039764 ATCCCTCTCTCACACGGTGA 59.960 55.000 16.29 1.17 40.50 4.02
2981 3199 0.894184 TCCCTCTCTCACACGGTGAC 60.894 60.000 16.29 0.00 37.67 3.67
2982 3200 1.179174 CCCTCTCTCACACGGTGACA 61.179 60.000 16.29 0.00 37.67 3.58
2984 3202 1.403382 CCTCTCTCACACGGTGACATG 60.403 57.143 16.29 2.84 37.67 3.21
2985 3203 0.038251 TCTCTCACACGGTGACATGC 60.038 55.000 16.29 0.00 37.67 4.06
2987 3205 0.105778 TCTCACACGGTGACATGCAA 59.894 50.000 16.29 0.00 37.67 4.08
2988 3206 0.943673 CTCACACGGTGACATGCAAA 59.056 50.000 16.29 0.00 37.67 3.68
2989 3207 0.943673 TCACACGGTGACATGCAAAG 59.056 50.000 16.29 0.00 37.67 2.77
2990 3208 0.040157 CACACGGTGACATGCAAAGG 60.040 55.000 16.29 0.00 35.23 3.11
2992 3210 0.040157 CACGGTGACATGCAAAGGTG 60.040 55.000 0.74 0.00 0.00 4.00
3008 3226 2.785868 GTGCATGTCACCTGATCCC 58.214 57.895 8.54 0.00 39.79 3.85
3009 3227 0.254178 GTGCATGTCACCTGATCCCT 59.746 55.000 8.54 0.00 39.79 4.20
3010 3228 0.253894 TGCATGTCACCTGATCCCTG 59.746 55.000 0.00 0.00 0.00 4.45
3011 3229 0.254178 GCATGTCACCTGATCCCTGT 59.746 55.000 0.00 0.00 0.00 4.00
3012 3230 1.745141 GCATGTCACCTGATCCCTGTC 60.745 57.143 0.00 0.00 0.00 3.51
3025 3243 2.278245 TCCCTGTCCATCAAATCCACT 58.722 47.619 0.00 0.00 0.00 4.00
3026 3244 2.239654 TCCCTGTCCATCAAATCCACTC 59.760 50.000 0.00 0.00 0.00 3.51
3027 3245 2.648059 CCTGTCCATCAAATCCACTCC 58.352 52.381 0.00 0.00 0.00 3.85
3028 3246 2.240667 CCTGTCCATCAAATCCACTCCT 59.759 50.000 0.00 0.00 0.00 3.69
3029 3247 3.539604 CTGTCCATCAAATCCACTCCTC 58.460 50.000 0.00 0.00 0.00 3.71
3030 3248 2.239654 TGTCCATCAAATCCACTCCTCC 59.760 50.000 0.00 0.00 0.00 4.30
3031 3249 2.239654 GTCCATCAAATCCACTCCTCCA 59.760 50.000 0.00 0.00 0.00 3.86
3032 3250 2.918934 TCCATCAAATCCACTCCTCCAA 59.081 45.455 0.00 0.00 0.00 3.53
3033 3251 3.528905 TCCATCAAATCCACTCCTCCAAT 59.471 43.478 0.00 0.00 0.00 3.16
3034 3252 3.635373 CCATCAAATCCACTCCTCCAATG 59.365 47.826 0.00 0.00 0.00 2.82
3035 3253 4.275810 CATCAAATCCACTCCTCCAATGT 58.724 43.478 0.00 0.00 0.00 2.71
3036 3254 3.955471 TCAAATCCACTCCTCCAATGTC 58.045 45.455 0.00 0.00 0.00 3.06
3037 3255 3.019564 CAAATCCACTCCTCCAATGTCC 58.980 50.000 0.00 0.00 0.00 4.02
3038 3256 0.833287 ATCCACTCCTCCAATGTCCG 59.167 55.000 0.00 0.00 0.00 4.79
3039 3257 1.450312 CCACTCCTCCAATGTCCGC 60.450 63.158 0.00 0.00 0.00 5.54
3040 3258 1.811266 CACTCCTCCAATGTCCGCG 60.811 63.158 0.00 0.00 0.00 6.46
3041 3259 2.202932 CTCCTCCAATGTCCGCGG 60.203 66.667 22.12 22.12 0.00 6.46
3042 3260 2.682136 TCCTCCAATGTCCGCGGA 60.682 61.111 27.28 27.28 0.00 5.54
3043 3261 2.032860 CTCCTCCAATGTCCGCGGAT 62.033 60.000 33.58 14.43 0.00 4.18
3044 3262 1.889105 CCTCCAATGTCCGCGGATG 60.889 63.158 33.58 25.00 0.00 3.51
3045 3263 1.153369 CTCCAATGTCCGCGGATGT 60.153 57.895 33.58 20.26 0.00 3.06
3046 3264 1.431488 CTCCAATGTCCGCGGATGTG 61.431 60.000 33.58 26.51 0.00 3.21
3047 3265 1.745115 CCAATGTCCGCGGATGTGT 60.745 57.895 33.58 14.46 0.00 3.72
3048 3266 1.305219 CCAATGTCCGCGGATGTGTT 61.305 55.000 33.58 19.75 0.00 3.32
3049 3267 0.096976 CAATGTCCGCGGATGTGTTC 59.903 55.000 33.58 17.93 0.00 3.18
3050 3268 1.358725 AATGTCCGCGGATGTGTTCG 61.359 55.000 33.58 0.00 0.00 3.95
3051 3269 3.186047 GTCCGCGGATGTGTTCGG 61.186 66.667 33.58 0.00 42.96 4.30
3073 3291 1.374631 GTCTGCATGCACTGACCGA 60.375 57.895 23.02 13.49 33.71 4.69
3074 3292 1.079612 TCTGCATGCACTGACCGAG 60.080 57.895 18.46 4.45 0.00 4.63
3080 3298 0.251354 ATGCACTGACCGAGCATTCT 59.749 50.000 0.00 0.00 45.80 2.40
3081 3299 0.390340 TGCACTGACCGAGCATTCTC 60.390 55.000 0.00 0.00 34.20 2.87
3089 3307 4.832248 TGACCGAGCATTCTCTATTTTGT 58.168 39.130 0.00 0.00 37.19 2.83
3093 3311 4.142622 CCGAGCATTCTCTATTTTGTTGCA 60.143 41.667 0.00 0.00 37.19 4.08
3100 3318 5.627499 TCTCTATTTTGTTGCATCCACAC 57.373 39.130 0.00 0.00 0.00 3.82
3102 3320 5.412594 TCTCTATTTTGTTGCATCCACACTC 59.587 40.000 0.00 0.00 0.00 3.51
3109 3327 2.008752 TGCATCCACACTCGTGTATG 57.991 50.000 1.90 5.61 42.83 2.39
3117 3335 3.370978 CCACACTCGTGTATGTCAAATCC 59.629 47.826 1.90 0.00 42.83 3.01
3118 3336 3.993736 CACACTCGTGTATGTCAAATCCA 59.006 43.478 1.90 0.00 42.83 3.41
3161 3379 4.904116 ACATGCACGTATGGAAATAAACG 58.096 39.130 3.50 0.00 40.99 3.60
3162 3380 3.392769 TGCACGTATGGAAATAAACGC 57.607 42.857 0.00 0.00 38.87 4.84
3164 3382 3.181515 TGCACGTATGGAAATAAACGCAG 60.182 43.478 0.00 0.00 38.87 5.18
3166 3384 2.353579 ACGTATGGAAATAAACGCAGGC 59.646 45.455 0.00 0.00 38.87 4.85
3167 3385 2.598907 CGTATGGAAATAAACGCAGGCG 60.599 50.000 12.71 12.71 46.03 5.52
3216 4150 7.495934 AGTTATATCGGGCATAATTGTAGCATC 59.504 37.037 0.00 0.00 0.00 3.91
3243 4177 3.750371 TCATCGGACAACCAAAAGATGT 58.250 40.909 3.64 0.00 37.38 3.06
3244 4178 3.501828 TCATCGGACAACCAAAAGATGTG 59.498 43.478 3.64 0.00 37.38 3.21
3262 4196 8.871686 AAGATGTGGTTTCAATTGAAAAGTAC 57.128 30.769 30.07 25.97 44.58 2.73
3263 4197 7.433680 AGATGTGGTTTCAATTGAAAAGTACC 58.566 34.615 30.07 26.70 44.58 3.34
3313 4247 2.260088 TAAACGGGGAAGGGCATCGG 62.260 60.000 0.00 0.00 0.00 4.18
3315 4249 4.241555 CGGGGAAGGGCATCGGAG 62.242 72.222 0.00 0.00 0.00 4.63
3316 4250 3.090532 GGGGAAGGGCATCGGAGT 61.091 66.667 0.00 0.00 0.00 3.85
3317 4251 2.506472 GGGAAGGGCATCGGAGTC 59.494 66.667 0.00 0.00 0.00 3.36
3318 4252 2.107141 GGAAGGGCATCGGAGTCG 59.893 66.667 0.00 0.00 37.82 4.18
3319 4253 2.722201 GGAAGGGCATCGGAGTCGT 61.722 63.158 0.00 0.00 37.69 4.34
3320 4254 1.227002 GAAGGGCATCGGAGTCGTC 60.227 63.158 0.00 0.00 37.69 4.20
3321 4255 2.630592 GAAGGGCATCGGAGTCGTCC 62.631 65.000 0.00 0.00 39.88 4.79
3329 4263 4.500116 GGAGTCGTCCGCCAGCTC 62.500 72.222 0.00 0.00 31.37 4.09
3330 4264 4.500116 GAGTCGTCCGCCAGCTCC 62.500 72.222 0.00 0.00 0.00 4.70
3332 4266 4.148825 GTCGTCCGCCAGCTCCAT 62.149 66.667 0.00 0.00 0.00 3.41
3333 4267 4.147449 TCGTCCGCCAGCTCCATG 62.147 66.667 0.00 0.00 0.00 3.66
3334 4268 4.457496 CGTCCGCCAGCTCCATGT 62.457 66.667 0.00 0.00 0.00 3.21
3335 4269 2.821366 GTCCGCCAGCTCCATGTG 60.821 66.667 0.00 0.00 0.00 3.21
3336 4270 3.002583 TCCGCCAGCTCCATGTGA 61.003 61.111 0.00 0.00 0.00 3.58
3337 4271 2.821366 CCGCCAGCTCCATGTGAC 60.821 66.667 0.00 0.00 0.00 3.67
3338 4272 2.046988 CGCCAGCTCCATGTGACA 60.047 61.111 0.00 0.00 0.00 3.58
3339 4273 2.393768 CGCCAGCTCCATGTGACAC 61.394 63.158 0.00 0.00 0.00 3.67
3340 4274 2.042831 GCCAGCTCCATGTGACACC 61.043 63.158 2.45 0.00 0.00 4.16
3341 4275 1.377725 CCAGCTCCATGTGACACCC 60.378 63.158 2.45 0.00 0.00 4.61
3342 4276 1.742880 CAGCTCCATGTGACACCCG 60.743 63.158 2.45 0.00 0.00 5.28
3343 4277 1.913262 AGCTCCATGTGACACCCGA 60.913 57.895 2.45 0.00 0.00 5.14
3344 4278 1.741770 GCTCCATGTGACACCCGAC 60.742 63.158 2.45 0.00 0.00 4.79
3345 4279 1.671166 CTCCATGTGACACCCGACA 59.329 57.895 2.45 0.00 0.00 4.35
3346 4280 0.034756 CTCCATGTGACACCCGACAA 59.965 55.000 2.45 0.00 0.00 3.18
3347 4281 0.034756 TCCATGTGACACCCGACAAG 59.965 55.000 2.45 0.00 0.00 3.16
3348 4282 1.577328 CCATGTGACACCCGACAAGC 61.577 60.000 2.45 0.00 0.00 4.01
3349 4283 1.302511 ATGTGACACCCGACAAGCC 60.303 57.895 2.45 0.00 0.00 4.35
3350 4284 1.768684 ATGTGACACCCGACAAGCCT 61.769 55.000 2.45 0.00 0.00 4.58
3351 4285 1.227853 GTGACACCCGACAAGCCTT 60.228 57.895 0.00 0.00 0.00 4.35
3352 4286 1.070786 TGACACCCGACAAGCCTTC 59.929 57.895 0.00 0.00 0.00 3.46
3353 4287 1.070786 GACACCCGACAAGCCTTCA 59.929 57.895 0.00 0.00 0.00 3.02
3354 4288 0.951040 GACACCCGACAAGCCTTCAG 60.951 60.000 0.00 0.00 0.00 3.02
3355 4289 1.371183 CACCCGACAAGCCTTCAGA 59.629 57.895 0.00 0.00 0.00 3.27
3356 4290 0.671781 CACCCGACAAGCCTTCAGAG 60.672 60.000 0.00 0.00 0.00 3.35
3357 4291 1.743252 CCCGACAAGCCTTCAGAGC 60.743 63.158 0.00 0.00 0.00 4.09
3358 4292 1.004560 CCGACAAGCCTTCAGAGCA 60.005 57.895 0.00 0.00 0.00 4.26
3359 4293 0.603707 CCGACAAGCCTTCAGAGCAA 60.604 55.000 0.00 0.00 0.00 3.91
3360 4294 1.446907 CGACAAGCCTTCAGAGCAAT 58.553 50.000 0.00 0.00 0.00 3.56
3361 4295 1.396301 CGACAAGCCTTCAGAGCAATC 59.604 52.381 0.00 0.00 0.00 2.67
3362 4296 2.430465 GACAAGCCTTCAGAGCAATCA 58.570 47.619 0.00 0.00 0.00 2.57
3363 4297 3.015327 GACAAGCCTTCAGAGCAATCAT 58.985 45.455 0.00 0.00 0.00 2.45
3364 4298 3.428532 ACAAGCCTTCAGAGCAATCATT 58.571 40.909 0.00 0.00 0.00 2.57
3365 4299 3.442977 ACAAGCCTTCAGAGCAATCATTC 59.557 43.478 0.00 0.00 0.00 2.67
3366 4300 2.652590 AGCCTTCAGAGCAATCATTCC 58.347 47.619 0.00 0.00 0.00 3.01
3367 4301 2.241685 AGCCTTCAGAGCAATCATTCCT 59.758 45.455 0.00 0.00 0.00 3.36
3368 4302 3.022406 GCCTTCAGAGCAATCATTCCTT 58.978 45.455 0.00 0.00 0.00 3.36
3369 4303 3.066481 GCCTTCAGAGCAATCATTCCTTC 59.934 47.826 0.00 0.00 0.00 3.46
3370 4304 4.525024 CCTTCAGAGCAATCATTCCTTCT 58.475 43.478 0.00 0.00 0.00 2.85
3371 4305 4.575645 CCTTCAGAGCAATCATTCCTTCTC 59.424 45.833 0.00 0.00 0.00 2.87
3372 4306 4.148128 TCAGAGCAATCATTCCTTCTCC 57.852 45.455 0.00 0.00 0.00 3.71
3373 4307 3.779183 TCAGAGCAATCATTCCTTCTCCT 59.221 43.478 0.00 0.00 0.00 3.69
3374 4308 4.128643 CAGAGCAATCATTCCTTCTCCTC 58.871 47.826 0.00 0.00 0.00 3.71
3375 4309 3.129871 GAGCAATCATTCCTTCTCCTCG 58.870 50.000 0.00 0.00 0.00 4.63
3376 4310 2.158842 AGCAATCATTCCTTCTCCTCGG 60.159 50.000 0.00 0.00 0.00 4.63
3377 4311 2.216898 CAATCATTCCTTCTCCTCGGC 58.783 52.381 0.00 0.00 0.00 5.54
3378 4312 0.390860 ATCATTCCTTCTCCTCGGCG 59.609 55.000 0.00 0.00 0.00 6.46
3379 4313 0.970937 TCATTCCTTCTCCTCGGCGT 60.971 55.000 6.85 0.00 0.00 5.68
3380 4314 0.807667 CATTCCTTCTCCTCGGCGTG 60.808 60.000 6.85 3.87 0.00 5.34
3381 4315 2.579684 ATTCCTTCTCCTCGGCGTGC 62.580 60.000 6.85 0.00 0.00 5.34
3382 4316 4.821589 CCTTCTCCTCGGCGTGCC 62.822 72.222 6.85 0.00 0.00 5.01
3383 4317 3.764466 CTTCTCCTCGGCGTGCCT 61.764 66.667 6.85 0.00 0.00 4.75
3384 4318 3.302347 CTTCTCCTCGGCGTGCCTT 62.302 63.158 6.85 0.00 0.00 4.35
3385 4319 2.788191 CTTCTCCTCGGCGTGCCTTT 62.788 60.000 6.85 0.00 0.00 3.11
3386 4320 3.121030 CTCCTCGGCGTGCCTTTG 61.121 66.667 6.85 0.00 0.00 2.77
3387 4321 3.883744 CTCCTCGGCGTGCCTTTGT 62.884 63.158 6.85 0.00 0.00 2.83
3388 4322 3.423154 CCTCGGCGTGCCTTTGTC 61.423 66.667 6.85 0.00 0.00 3.18
3389 4323 3.777925 CTCGGCGTGCCTTTGTCG 61.778 66.667 6.85 0.00 0.00 4.35
3392 4326 4.025401 GGCGTGCCTTTGTCGGTG 62.025 66.667 2.98 0.00 0.00 4.94
3393 4327 4.683334 GCGTGCCTTTGTCGGTGC 62.683 66.667 0.00 0.00 0.00 5.01
3394 4328 4.025401 CGTGCCTTTGTCGGTGCC 62.025 66.667 0.00 0.00 0.00 5.01
3395 4329 2.594592 GTGCCTTTGTCGGTGCCT 60.595 61.111 0.00 0.00 0.00 4.75
3396 4330 2.193536 GTGCCTTTGTCGGTGCCTT 61.194 57.895 0.00 0.00 0.00 4.35
3397 4331 1.896660 TGCCTTTGTCGGTGCCTTC 60.897 57.895 0.00 0.00 0.00 3.46
3398 4332 2.626780 GCCTTTGTCGGTGCCTTCC 61.627 63.158 0.00 0.00 0.00 3.46
3399 4333 1.228124 CCTTTGTCGGTGCCTTCCA 60.228 57.895 0.00 0.00 0.00 3.53
3400 4334 1.515521 CCTTTGTCGGTGCCTTCCAC 61.516 60.000 0.00 0.00 43.90 4.02
3409 4343 2.280186 GCCTTCCACCGGCGATAG 60.280 66.667 9.30 0.00 37.87 2.08
3410 4344 3.090219 GCCTTCCACCGGCGATAGT 62.090 63.158 9.30 0.00 37.87 2.12
3411 4345 1.227263 CCTTCCACCGGCGATAGTG 60.227 63.158 9.30 8.27 39.35 2.74
3412 4346 1.672854 CCTTCCACCGGCGATAGTGA 61.673 60.000 9.30 0.00 36.01 3.41
3413 4347 0.249073 CTTCCACCGGCGATAGTGAG 60.249 60.000 9.30 2.88 36.01 3.51
3414 4348 2.279517 CCACCGGCGATAGTGAGC 60.280 66.667 9.30 0.00 36.01 4.26
3419 4353 2.336809 GGCGATAGTGAGCCGAGG 59.663 66.667 0.00 0.00 44.22 4.63
3420 4354 2.355244 GCGATAGTGAGCCGAGGC 60.355 66.667 5.89 5.89 39.22 4.70
3421 4355 2.336809 CGATAGTGAGCCGAGGCC 59.663 66.667 10.95 0.00 43.17 5.19
3422 4356 2.196925 CGATAGTGAGCCGAGGCCT 61.197 63.158 3.86 3.86 43.17 5.19
3423 4357 1.739338 CGATAGTGAGCCGAGGCCTT 61.739 60.000 6.77 0.00 43.17 4.35
3424 4358 0.032815 GATAGTGAGCCGAGGCCTTC 59.967 60.000 6.77 0.00 43.17 3.46
3425 4359 0.687757 ATAGTGAGCCGAGGCCTTCA 60.688 55.000 6.77 3.06 43.17 3.02
3426 4360 0.687757 TAGTGAGCCGAGGCCTTCAT 60.688 55.000 6.77 0.00 43.17 2.57
3427 4361 1.522580 GTGAGCCGAGGCCTTCATC 60.523 63.158 6.77 3.83 43.17 2.92
3428 4362 2.279784 GAGCCGAGGCCTTCATCG 60.280 66.667 6.77 5.81 43.17 3.84
3429 4363 4.537433 AGCCGAGGCCTTCATCGC 62.537 66.667 6.77 4.41 43.17 4.58
3436 4370 3.577313 GCCTTCATCGCCGCCTTC 61.577 66.667 0.00 0.00 0.00 3.46
3437 4371 3.264897 CCTTCATCGCCGCCTTCG 61.265 66.667 0.00 0.00 0.00 3.79
3438 4372 3.929948 CTTCATCGCCGCCTTCGC 61.930 66.667 0.00 0.00 0.00 4.70
3467 4401 4.933483 GCTCCGACAGCTCGATAG 57.067 61.111 0.00 0.00 45.83 2.08
3468 4402 2.026522 GCTCCGACAGCTCGATAGT 58.973 57.895 0.00 0.00 45.83 2.12
3469 4403 0.317436 GCTCCGACAGCTCGATAGTG 60.317 60.000 0.00 0.00 45.83 2.74
3470 4404 1.300481 CTCCGACAGCTCGATAGTGA 58.700 55.000 0.00 0.00 43.06 3.41
3471 4405 1.262950 CTCCGACAGCTCGATAGTGAG 59.737 57.143 0.00 0.00 43.06 3.51
3478 4412 1.284408 CTCGATAGTGAGCCGGAGC 59.716 63.158 5.05 0.00 36.84 4.70
3479 4413 2.050895 CGATAGTGAGCCGGAGCG 60.051 66.667 5.05 0.00 46.67 5.03
3480 4414 2.355244 GATAGTGAGCCGGAGCGC 60.355 66.667 5.05 0.00 46.67 5.92
3481 4415 3.850095 GATAGTGAGCCGGAGCGCC 62.850 68.421 5.05 0.00 46.67 6.53
3492 4426 3.050275 GAGCGCCTTGGCGTTCTT 61.050 61.111 32.72 18.61 39.61 2.52
3493 4427 3.028366 GAGCGCCTTGGCGTTCTTC 62.028 63.158 32.72 21.71 39.61 2.87
3494 4428 4.103103 GCGCCTTGGCGTTCTTCC 62.103 66.667 30.53 12.65 35.43 3.46
3495 4429 3.788766 CGCCTTGGCGTTCTTCCG 61.789 66.667 24.03 0.00 0.00 4.30
3504 4438 1.419922 CGTTCTTCCGCCACAATCG 59.580 57.895 0.00 0.00 0.00 3.34
3505 4439 1.011968 CGTTCTTCCGCCACAATCGA 61.012 55.000 0.00 0.00 0.00 3.59
3506 4440 1.369625 GTTCTTCCGCCACAATCGAT 58.630 50.000 0.00 0.00 0.00 3.59
3507 4441 2.546778 GTTCTTCCGCCACAATCGATA 58.453 47.619 0.00 0.00 0.00 2.92
3508 4442 3.131396 GTTCTTCCGCCACAATCGATAT 58.869 45.455 0.00 0.00 0.00 1.63
3509 4443 2.754472 TCTTCCGCCACAATCGATATG 58.246 47.619 0.00 0.00 0.00 1.78
3510 4444 1.195448 CTTCCGCCACAATCGATATGC 59.805 52.381 0.00 0.00 0.00 3.14
3511 4445 0.392706 TCCGCCACAATCGATATGCT 59.607 50.000 0.00 0.00 0.00 3.79
3512 4446 1.202639 TCCGCCACAATCGATATGCTT 60.203 47.619 0.00 0.00 0.00 3.91
3513 4447 1.195448 CCGCCACAATCGATATGCTTC 59.805 52.381 0.00 0.00 0.00 3.86
3514 4448 2.138320 CGCCACAATCGATATGCTTCT 58.862 47.619 0.00 0.00 0.00 2.85
3515 4449 2.096565 CGCCACAATCGATATGCTTCTG 60.097 50.000 0.00 0.00 0.00 3.02
3516 4450 2.874701 GCCACAATCGATATGCTTCTGT 59.125 45.455 0.00 0.00 0.00 3.41
3517 4451 3.059325 GCCACAATCGATATGCTTCTGTC 60.059 47.826 0.00 0.00 0.00 3.51
3518 4452 4.375272 CCACAATCGATATGCTTCTGTCT 58.625 43.478 0.00 0.00 0.00 3.41
3519 4453 4.447054 CCACAATCGATATGCTTCTGTCTC 59.553 45.833 0.00 0.00 0.00 3.36
3520 4454 4.447054 CACAATCGATATGCTTCTGTCTCC 59.553 45.833 0.00 0.00 0.00 3.71
3521 4455 3.567576 ATCGATATGCTTCTGTCTCCG 57.432 47.619 0.00 0.00 0.00 4.63
3522 4456 1.001268 TCGATATGCTTCTGTCTCCGC 60.001 52.381 0.00 0.00 0.00 5.54
3523 4457 1.789506 GATATGCTTCTGTCTCCGCC 58.210 55.000 0.00 0.00 0.00 6.13
3524 4458 1.069204 GATATGCTTCTGTCTCCGCCA 59.931 52.381 0.00 0.00 0.00 5.69
3525 4459 1.123077 TATGCTTCTGTCTCCGCCAT 58.877 50.000 0.00 0.00 0.00 4.40
3526 4460 0.254178 ATGCTTCTGTCTCCGCCATT 59.746 50.000 0.00 0.00 0.00 3.16
3527 4461 0.674581 TGCTTCTGTCTCCGCCATTG 60.675 55.000 0.00 0.00 0.00 2.82
3528 4462 0.674895 GCTTCTGTCTCCGCCATTGT 60.675 55.000 0.00 0.00 0.00 2.71
3529 4463 1.363744 CTTCTGTCTCCGCCATTGTC 58.636 55.000 0.00 0.00 0.00 3.18
3530 4464 0.684535 TTCTGTCTCCGCCATTGTCA 59.315 50.000 0.00 0.00 0.00 3.58
3531 4465 0.684535 TCTGTCTCCGCCATTGTCAA 59.315 50.000 0.00 0.00 0.00 3.18
3532 4466 1.081892 CTGTCTCCGCCATTGTCAAG 58.918 55.000 0.00 0.00 0.00 3.02
3533 4467 0.321564 TGTCTCCGCCATTGTCAAGG 60.322 55.000 0.00 0.00 0.00 3.61
3534 4468 0.036388 GTCTCCGCCATTGTCAAGGA 60.036 55.000 0.00 0.00 0.00 3.36
3535 4469 2.772739 CTCCGCCATTGTCAAGGAG 58.227 57.895 0.00 1.64 41.91 3.69
3536 4470 1.372087 CTCCGCCATTGTCAAGGAGC 61.372 60.000 0.00 0.08 41.48 4.70
3537 4471 2.753966 CCGCCATTGTCAAGGAGCG 61.754 63.158 19.39 19.39 42.99 5.03
3538 4472 2.034879 CGCCATTGTCAAGGAGCGT 61.035 57.895 18.58 0.00 38.81 5.07
3539 4473 1.503542 GCCATTGTCAAGGAGCGTG 59.496 57.895 0.00 0.00 0.00 5.34
3540 4474 1.926511 GCCATTGTCAAGGAGCGTGG 61.927 60.000 0.00 0.00 0.00 4.94
3541 4475 1.308069 CCATTGTCAAGGAGCGTGGG 61.308 60.000 0.00 0.00 0.00 4.61
3542 4476 0.321564 CATTGTCAAGGAGCGTGGGA 60.322 55.000 0.00 0.00 0.00 4.37
3543 4477 0.036010 ATTGTCAAGGAGCGTGGGAG 60.036 55.000 0.00 0.00 0.00 4.30
3544 4478 2.111999 TTGTCAAGGAGCGTGGGAGG 62.112 60.000 0.00 0.00 0.00 4.30
3545 4479 2.119611 TCAAGGAGCGTGGGAGGA 59.880 61.111 0.00 0.00 0.00 3.71
3546 4480 2.266055 CAAGGAGCGTGGGAGGAC 59.734 66.667 0.00 0.00 0.00 3.85
3547 4481 3.382832 AAGGAGCGTGGGAGGACG 61.383 66.667 0.00 0.00 42.42 4.79
3550 4484 4.131088 GAGCGTGGGAGGACGGAC 62.131 72.222 0.00 0.00 39.81 4.79
3554 4488 3.998672 GTGGGAGGACGGACGCAA 61.999 66.667 0.00 0.00 0.00 4.85
3555 4489 3.000819 TGGGAGGACGGACGCAAT 61.001 61.111 0.00 0.00 0.00 3.56
3556 4490 2.511600 GGGAGGACGGACGCAATG 60.512 66.667 0.00 0.00 0.00 2.82
3557 4491 2.577059 GGAGGACGGACGCAATGA 59.423 61.111 0.00 0.00 0.00 2.57
3558 4492 1.810030 GGAGGACGGACGCAATGAC 60.810 63.158 0.00 0.00 0.00 3.06
3559 4493 1.810030 GAGGACGGACGCAATGACC 60.810 63.158 0.00 0.00 0.00 4.02
3560 4494 2.047655 GGACGGACGCAATGACCA 60.048 61.111 0.00 0.00 32.16 4.02
3561 4495 2.388232 GGACGGACGCAATGACCAC 61.388 63.158 0.00 0.00 32.16 4.16
3562 4496 2.726691 GACGGACGCAATGACCACG 61.727 63.158 0.00 0.00 32.16 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.303022 TCCTTGGGTGTTGAGATCTGAC 59.697 50.000 0.00 0.00 0.00 3.51
412 437 1.441311 CACACCCAAACCCAACAGC 59.559 57.895 0.00 0.00 0.00 4.40
496 536 7.955918 ACATCTTTCATTTTATTATCCCTGGC 58.044 34.615 0.00 0.00 0.00 4.85
499 539 9.713684 TGGAACATCTTTCATTTTATTATCCCT 57.286 29.630 0.00 0.00 0.00 4.20
520 560 6.161855 AGGAAAGAAGGAAAACAATGGAAC 57.838 37.500 0.00 0.00 0.00 3.62
545 588 6.855914 ACTTGCAAATATGTTTTGTACGTGAG 59.144 34.615 0.00 0.00 28.77 3.51
546 589 6.730175 ACTTGCAAATATGTTTTGTACGTGA 58.270 32.000 0.00 0.00 28.77 4.35
547 590 6.984740 ACTTGCAAATATGTTTTGTACGTG 57.015 33.333 0.00 0.00 28.77 4.49
548 591 7.806014 CCTTACTTGCAAATATGTTTTGTACGT 59.194 33.333 0.00 0.00 33.00 3.57
549 592 7.201316 GCCTTACTTGCAAATATGTTTTGTACG 60.201 37.037 0.00 0.00 0.00 3.67
550 593 7.812669 AGCCTTACTTGCAAATATGTTTTGTAC 59.187 33.333 0.00 0.00 0.00 2.90
551 594 7.891561 AGCCTTACTTGCAAATATGTTTTGTA 58.108 30.769 0.00 0.00 0.00 2.41
552 595 6.758254 AGCCTTACTTGCAAATATGTTTTGT 58.242 32.000 0.00 0.00 0.00 2.83
553 596 7.656707 AAGCCTTACTTGCAAATATGTTTTG 57.343 32.000 0.00 0.00 37.17 2.44
554 597 8.558700 CAAAAGCCTTACTTGCAAATATGTTTT 58.441 29.630 0.00 0.00 39.09 2.43
561 604 3.390967 ACCCAAAAGCCTTACTTGCAAAT 59.609 39.130 0.00 0.00 39.09 2.32
565 608 1.605457 GCACCCAAAAGCCTTACTTGC 60.605 52.381 0.00 0.00 39.09 4.01
604 647 1.227497 GGCCAGCTCGAGAAGGATG 60.227 63.158 23.05 10.35 0.00 3.51
605 648 1.687146 TGGCCAGCTCGAGAAGGAT 60.687 57.895 23.05 0.00 0.00 3.24
606 649 2.283894 TGGCCAGCTCGAGAAGGA 60.284 61.111 23.05 4.70 0.00 3.36
607 650 2.125350 GTGGCCAGCTCGAGAAGG 60.125 66.667 18.75 17.49 0.00 3.46
608 651 2.125350 GGTGGCCAGCTCGAGAAG 60.125 66.667 27.63 7.12 0.00 2.85
764 807 9.052759 GCCCTCTCTCGTTAATTAATTAATTCA 57.947 33.333 23.40 12.67 37.16 2.57
765 808 8.504815 GGCCCTCTCTCGTTAATTAATTAATTC 58.495 37.037 23.40 11.75 37.16 2.17
766 809 7.447545 GGGCCCTCTCTCGTTAATTAATTAATT 59.552 37.037 23.28 23.28 39.14 1.40
767 810 6.940867 GGGCCCTCTCTCGTTAATTAATTAAT 59.059 38.462 20.60 4.81 35.02 1.40
768 811 6.100714 AGGGCCCTCTCTCGTTAATTAATTAA 59.899 38.462 22.28 15.19 0.00 1.40
769 812 5.605488 AGGGCCCTCTCTCGTTAATTAATTA 59.395 40.000 22.28 3.71 0.00 1.40
829 880 1.296727 GTCGGGCCGGAGATAAAAAG 58.703 55.000 27.98 0.00 0.00 2.27
939 994 1.679311 CAGGGCCTGCTAGTGAACA 59.321 57.895 22.68 0.00 0.00 3.18
1038 1097 2.682494 TCCTTCTTACCGCCGCCT 60.682 61.111 0.00 0.00 0.00 5.52
1104 1181 0.878961 ACGACTTGCCGAAACTCCAC 60.879 55.000 0.00 0.00 0.00 4.02
1110 1187 3.399770 CGCGACGACTTGCCGAAA 61.400 61.111 0.00 0.00 0.00 3.46
1899 2087 0.743701 ACTCGATACTCGCCGACAGT 60.744 55.000 0.00 0.00 40.21 3.55
1911 2099 1.481240 CGTAGGACGACGACTCGATA 58.519 55.000 5.20 0.00 46.05 2.92
2584 2799 1.070914 TGCCATGAACCGTGTGAAGTA 59.929 47.619 0.00 0.00 0.00 2.24
2598 2813 0.799917 CTCGTCGTCTCACTGCCATG 60.800 60.000 0.00 0.00 0.00 3.66
2700 2915 6.316890 TCACATGATTGATCACAACGATGAAT 59.683 34.615 0.00 0.00 40.23 2.57
2703 2918 5.473796 TCACATGATTGATCACAACGATG 57.526 39.130 0.00 0.00 40.03 3.84
2704 2919 6.688637 AATCACATGATTGATCACAACGAT 57.311 33.333 6.31 0.00 42.66 3.73
2826 3044 4.141274 TGGAAGAACACAGGGATTGAGAAA 60.141 41.667 0.00 0.00 0.00 2.52
2837 3055 3.608506 CGAGTCGTAATGGAAGAACACAG 59.391 47.826 3.82 0.00 0.00 3.66
2867 3085 5.299148 ACATAATGCAGAGCAAAAGCAAAA 58.701 33.333 0.00 0.00 43.62 2.44
2899 3117 3.711348 CGGCTGAAGCTCGGAATC 58.289 61.111 1.74 0.00 41.70 2.52
2904 3122 2.358737 AAACCCGGCTGAAGCTCG 60.359 61.111 0.00 4.44 41.70 5.03
2927 3145 4.335082 TCCAACGATGCTTTTATCAACG 57.665 40.909 0.00 0.00 36.11 4.10
2957 3175 1.134965 CCGTGTGAGAGAGGGATTGAC 60.135 57.143 0.00 0.00 0.00 3.18
2970 3188 0.943673 CTTTGCATGTCACCGTGTGA 59.056 50.000 0.00 3.02 40.50 3.58
2971 3189 0.040157 CCTTTGCATGTCACCGTGTG 60.040 55.000 0.00 0.00 34.45 3.82
2972 3190 0.465460 ACCTTTGCATGTCACCGTGT 60.465 50.000 0.00 0.00 0.00 4.49
2974 3192 2.330254 CACCTTTGCATGTCACCGT 58.670 52.632 0.00 0.00 0.00 4.83
2990 3208 0.254178 AGGGATCAGGTGACATGCAC 59.746 55.000 10.63 10.63 46.98 4.57
2992 3210 0.254178 ACAGGGATCAGGTGACATGC 59.746 55.000 0.00 0.00 0.00 4.06
2993 3211 1.134280 GGACAGGGATCAGGTGACATG 60.134 57.143 0.00 0.00 0.00 3.21
2994 3212 1.207791 GGACAGGGATCAGGTGACAT 58.792 55.000 0.00 0.00 0.00 3.06
2995 3213 0.178906 TGGACAGGGATCAGGTGACA 60.179 55.000 0.00 0.00 0.00 3.58
2997 3215 1.273781 TGATGGACAGGGATCAGGTGA 60.274 52.381 0.00 0.00 0.00 4.02
2998 3216 1.206878 TGATGGACAGGGATCAGGTG 58.793 55.000 0.00 0.00 0.00 4.00
2999 3217 1.971149 TTGATGGACAGGGATCAGGT 58.029 50.000 0.00 0.00 30.39 4.00
3001 3219 3.117776 TGGATTTGATGGACAGGGATCAG 60.118 47.826 0.00 0.00 30.39 2.90
3002 3220 2.851821 TGGATTTGATGGACAGGGATCA 59.148 45.455 0.00 0.00 0.00 2.92
3003 3221 3.117738 AGTGGATTTGATGGACAGGGATC 60.118 47.826 0.00 0.00 0.00 3.36
3005 3223 2.239654 GAGTGGATTTGATGGACAGGGA 59.760 50.000 0.00 0.00 0.00 4.20
3007 3225 2.240667 AGGAGTGGATTTGATGGACAGG 59.759 50.000 0.00 0.00 0.00 4.00
3008 3226 3.539604 GAGGAGTGGATTTGATGGACAG 58.460 50.000 0.00 0.00 0.00 3.51
3009 3227 2.239654 GGAGGAGTGGATTTGATGGACA 59.760 50.000 0.00 0.00 0.00 4.02
3010 3228 2.239654 TGGAGGAGTGGATTTGATGGAC 59.760 50.000 0.00 0.00 0.00 4.02
3011 3229 2.561187 TGGAGGAGTGGATTTGATGGA 58.439 47.619 0.00 0.00 0.00 3.41
3012 3230 3.370840 TTGGAGGAGTGGATTTGATGG 57.629 47.619 0.00 0.00 0.00 3.51
3025 3243 2.063979 ATCCGCGGACATTGGAGGA 61.064 57.895 33.75 3.58 34.75 3.71
3026 3244 1.889105 CATCCGCGGACATTGGAGG 60.889 63.158 33.75 3.45 34.75 4.30
3027 3245 1.153369 ACATCCGCGGACATTGGAG 60.153 57.895 33.75 16.12 34.75 3.86
3028 3246 1.449423 CACATCCGCGGACATTGGA 60.449 57.895 33.75 6.41 35.96 3.53
3029 3247 1.305219 AACACATCCGCGGACATTGG 61.305 55.000 33.75 20.19 0.00 3.16
3030 3248 0.096976 GAACACATCCGCGGACATTG 59.903 55.000 33.75 27.17 0.00 2.82
3031 3249 1.358725 CGAACACATCCGCGGACATT 61.359 55.000 33.75 21.57 0.00 2.71
3032 3250 1.809619 CGAACACATCCGCGGACAT 60.810 57.895 33.75 19.48 0.00 3.06
3033 3251 2.431771 CGAACACATCCGCGGACA 60.432 61.111 33.75 10.24 0.00 4.02
3034 3252 3.186047 CCGAACACATCCGCGGAC 61.186 66.667 33.75 16.06 46.29 4.79
3052 3270 1.494628 GTCAGTGCATGCAGACGTG 59.505 57.895 23.41 15.97 35.78 4.49
3053 3271 1.669115 GGTCAGTGCATGCAGACGT 60.669 57.895 23.41 2.98 31.93 4.34
3054 3272 2.733671 CGGTCAGTGCATGCAGACG 61.734 63.158 23.41 16.73 31.93 4.18
3055 3273 1.357258 CTCGGTCAGTGCATGCAGAC 61.357 60.000 23.41 24.17 0.00 3.51
3056 3274 1.079612 CTCGGTCAGTGCATGCAGA 60.080 57.895 23.41 13.53 0.00 4.26
3057 3275 2.747822 GCTCGGTCAGTGCATGCAG 61.748 63.158 23.41 10.99 39.04 4.41
3058 3276 2.743538 GCTCGGTCAGTGCATGCA 60.744 61.111 18.46 18.46 39.04 3.96
3059 3277 2.743538 TGCTCGGTCAGTGCATGC 60.744 61.111 11.82 11.82 43.48 4.06
3073 3291 5.419788 TGGATGCAACAAAATAGAGAATGCT 59.580 36.000 0.00 0.00 33.66 3.79
3074 3292 5.517770 GTGGATGCAACAAAATAGAGAATGC 59.482 40.000 0.00 0.00 0.00 3.56
3077 3295 5.769662 AGTGTGGATGCAACAAAATAGAGAA 59.230 36.000 0.00 0.00 0.00 2.87
3080 3298 4.154015 CGAGTGTGGATGCAACAAAATAGA 59.846 41.667 0.00 0.00 0.00 1.98
3081 3299 4.083324 ACGAGTGTGGATGCAACAAAATAG 60.083 41.667 0.00 0.00 0.00 1.73
3100 3318 2.609459 GGCTGGATTTGACATACACGAG 59.391 50.000 0.00 0.00 0.00 4.18
3102 3320 1.670811 GGGCTGGATTTGACATACACG 59.329 52.381 0.00 0.00 0.00 4.49
3109 3327 3.416156 GATATGAGGGGCTGGATTTGAC 58.584 50.000 0.00 0.00 0.00 3.18
3117 3335 0.402887 TGCATGGATATGAGGGGCTG 59.597 55.000 0.00 0.00 36.36 4.85
3118 3336 1.151760 TTGCATGGATATGAGGGGCT 58.848 50.000 0.00 0.00 36.36 5.19
3161 3379 1.956620 GCTAGTTCGTTGACGCCTGC 61.957 60.000 0.00 1.64 39.60 4.85
3162 3380 0.666274 TGCTAGTTCGTTGACGCCTG 60.666 55.000 0.00 0.00 39.60 4.85
3164 3382 1.623973 GGTGCTAGTTCGTTGACGCC 61.624 60.000 0.00 0.00 39.60 5.68
3166 3384 1.455786 CTTGGTGCTAGTTCGTTGACG 59.544 52.381 0.00 0.00 41.45 4.35
3167 3385 2.475487 GACTTGGTGCTAGTTCGTTGAC 59.525 50.000 0.00 0.00 0.00 3.18
3216 4150 0.460109 TGGTTGTCCGATGATCGCTG 60.460 55.000 9.74 0.00 38.82 5.18
3220 4154 4.396166 ACATCTTTTGGTTGTCCGATGATC 59.604 41.667 0.00 0.00 34.36 2.92
3298 4232 4.241555 CTCCGATGCCCTTCCCCG 62.242 72.222 0.00 0.00 0.00 5.73
3313 4247 4.500116 GGAGCTGGCGGACGACTC 62.500 72.222 0.00 0.00 0.00 3.36
3315 4249 4.148825 ATGGAGCTGGCGGACGAC 62.149 66.667 0.00 0.00 0.00 4.34
3316 4250 4.147449 CATGGAGCTGGCGGACGA 62.147 66.667 0.00 0.00 0.00 4.20
3317 4251 4.457496 ACATGGAGCTGGCGGACG 62.457 66.667 0.00 0.00 0.00 4.79
3318 4252 2.821366 CACATGGAGCTGGCGGAC 60.821 66.667 0.00 0.00 0.00 4.79
3319 4253 3.002583 TCACATGGAGCTGGCGGA 61.003 61.111 0.00 0.00 0.00 5.54
3320 4254 2.821366 GTCACATGGAGCTGGCGG 60.821 66.667 0.00 0.00 0.00 6.13
3321 4255 2.046988 TGTCACATGGAGCTGGCG 60.047 61.111 0.00 0.00 0.00 5.69
3322 4256 2.042831 GGTGTCACATGGAGCTGGC 61.043 63.158 5.12 0.00 0.00 4.85
3323 4257 1.377725 GGGTGTCACATGGAGCTGG 60.378 63.158 5.12 0.00 0.00 4.85
3324 4258 1.742880 CGGGTGTCACATGGAGCTG 60.743 63.158 5.12 0.00 0.00 4.24
3325 4259 1.913262 TCGGGTGTCACATGGAGCT 60.913 57.895 5.12 0.00 0.00 4.09
3326 4260 1.741770 GTCGGGTGTCACATGGAGC 60.742 63.158 5.12 0.00 0.00 4.70
3327 4261 0.034756 TTGTCGGGTGTCACATGGAG 59.965 55.000 5.12 0.00 0.00 3.86
3328 4262 0.034756 CTTGTCGGGTGTCACATGGA 59.965 55.000 5.12 0.00 0.00 3.41
3329 4263 1.577328 GCTTGTCGGGTGTCACATGG 61.577 60.000 5.12 0.00 0.00 3.66
3330 4264 1.577328 GGCTTGTCGGGTGTCACATG 61.577 60.000 5.12 0.00 0.00 3.21
3331 4265 1.302511 GGCTTGTCGGGTGTCACAT 60.303 57.895 5.12 0.00 0.00 3.21
3332 4266 1.978455 AAGGCTTGTCGGGTGTCACA 61.978 55.000 0.00 0.00 0.00 3.58
3333 4267 1.227853 AAGGCTTGTCGGGTGTCAC 60.228 57.895 0.00 0.00 0.00 3.67
3334 4268 1.070786 GAAGGCTTGTCGGGTGTCA 59.929 57.895 3.46 0.00 0.00 3.58
3335 4269 0.951040 CTGAAGGCTTGTCGGGTGTC 60.951 60.000 3.46 0.00 0.00 3.67
3336 4270 1.071471 CTGAAGGCTTGTCGGGTGT 59.929 57.895 3.46 0.00 0.00 4.16
3337 4271 0.671781 CTCTGAAGGCTTGTCGGGTG 60.672 60.000 3.46 0.00 0.00 4.61
3338 4272 1.674057 CTCTGAAGGCTTGTCGGGT 59.326 57.895 3.46 0.00 0.00 5.28
3339 4273 1.743252 GCTCTGAAGGCTTGTCGGG 60.743 63.158 3.46 0.00 0.00 5.14
3340 4274 0.603707 TTGCTCTGAAGGCTTGTCGG 60.604 55.000 3.46 0.00 0.00 4.79
3341 4275 1.396301 GATTGCTCTGAAGGCTTGTCG 59.604 52.381 3.46 0.00 0.00 4.35
3342 4276 2.430465 TGATTGCTCTGAAGGCTTGTC 58.570 47.619 3.46 0.00 0.00 3.18
3343 4277 2.574006 TGATTGCTCTGAAGGCTTGT 57.426 45.000 3.46 0.00 0.00 3.16
3344 4278 3.181489 GGAATGATTGCTCTGAAGGCTTG 60.181 47.826 3.46 0.00 0.00 4.01
3345 4279 3.022406 GGAATGATTGCTCTGAAGGCTT 58.978 45.455 0.00 0.00 0.00 4.35
3346 4280 2.241685 AGGAATGATTGCTCTGAAGGCT 59.758 45.455 0.00 0.00 0.00 4.58
3347 4281 2.652590 AGGAATGATTGCTCTGAAGGC 58.347 47.619 0.00 0.00 0.00 4.35
3348 4282 4.525024 AGAAGGAATGATTGCTCTGAAGG 58.475 43.478 0.00 0.00 0.00 3.46
3349 4283 4.575645 GGAGAAGGAATGATTGCTCTGAAG 59.424 45.833 0.00 0.00 0.00 3.02
3350 4284 4.226846 AGGAGAAGGAATGATTGCTCTGAA 59.773 41.667 0.00 0.00 0.00 3.02
3351 4285 3.779183 AGGAGAAGGAATGATTGCTCTGA 59.221 43.478 0.00 0.00 0.00 3.27
3352 4286 4.128643 GAGGAGAAGGAATGATTGCTCTG 58.871 47.826 0.00 0.00 0.00 3.35
3353 4287 3.181467 CGAGGAGAAGGAATGATTGCTCT 60.181 47.826 0.00 0.00 0.00 4.09
3354 4288 3.129871 CGAGGAGAAGGAATGATTGCTC 58.870 50.000 0.00 0.00 0.00 4.26
3355 4289 2.158842 CCGAGGAGAAGGAATGATTGCT 60.159 50.000 0.00 0.00 0.00 3.91
3356 4290 2.216898 CCGAGGAGAAGGAATGATTGC 58.783 52.381 0.00 0.00 0.00 3.56
3357 4291 2.216898 GCCGAGGAGAAGGAATGATTG 58.783 52.381 0.00 0.00 0.00 2.67
3358 4292 1.202580 CGCCGAGGAGAAGGAATGATT 60.203 52.381 0.00 0.00 0.00 2.57
3359 4293 0.390860 CGCCGAGGAGAAGGAATGAT 59.609 55.000 0.00 0.00 0.00 2.45
3360 4294 0.970937 ACGCCGAGGAGAAGGAATGA 60.971 55.000 0.00 0.00 0.00 2.57
3361 4295 0.807667 CACGCCGAGGAGAAGGAATG 60.808 60.000 0.00 0.00 0.00 2.67
3362 4296 1.517832 CACGCCGAGGAGAAGGAAT 59.482 57.895 0.00 0.00 0.00 3.01
3363 4297 2.970639 CACGCCGAGGAGAAGGAA 59.029 61.111 0.00 0.00 0.00 3.36
3364 4298 3.760035 GCACGCCGAGGAGAAGGA 61.760 66.667 0.00 0.00 0.00 3.36
3365 4299 4.821589 GGCACGCCGAGGAGAAGG 62.822 72.222 0.00 0.00 0.00 3.46
3366 4300 2.788191 AAAGGCACGCCGAGGAGAAG 62.788 60.000 1.61 0.00 41.95 2.85
3367 4301 2.879233 AAAGGCACGCCGAGGAGAA 61.879 57.895 1.61 0.00 41.95 2.87
3368 4302 3.311110 AAAGGCACGCCGAGGAGA 61.311 61.111 1.61 0.00 41.95 3.71
3369 4303 3.121030 CAAAGGCACGCCGAGGAG 61.121 66.667 1.61 0.00 41.95 3.69
3370 4304 3.876589 GACAAAGGCACGCCGAGGA 62.877 63.158 1.61 0.00 41.95 3.71
3371 4305 3.423154 GACAAAGGCACGCCGAGG 61.423 66.667 1.61 0.00 41.95 4.63
3372 4306 3.777925 CGACAAAGGCACGCCGAG 61.778 66.667 1.61 0.00 41.95 4.63
3375 4309 4.025401 CACCGACAAAGGCACGCC 62.025 66.667 0.00 0.00 33.69 5.68
3376 4310 4.683334 GCACCGACAAAGGCACGC 62.683 66.667 0.00 0.00 33.69 5.34
3377 4311 4.025401 GGCACCGACAAAGGCACG 62.025 66.667 0.00 0.00 33.69 5.34
3378 4312 2.130073 GAAGGCACCGACAAAGGCAC 62.130 60.000 0.00 0.00 33.69 5.01
3379 4313 1.896660 GAAGGCACCGACAAAGGCA 60.897 57.895 0.00 0.00 33.69 4.75
3380 4314 2.626780 GGAAGGCACCGACAAAGGC 61.627 63.158 0.00 0.00 33.69 4.35
3381 4315 1.228124 TGGAAGGCACCGACAAAGG 60.228 57.895 0.00 0.00 37.30 3.11
3382 4316 1.515521 GGTGGAAGGCACCGACAAAG 61.516 60.000 0.00 0.00 32.56 2.77
3383 4317 1.527380 GGTGGAAGGCACCGACAAA 60.527 57.895 0.00 0.00 32.56 2.83
3384 4318 2.112297 GGTGGAAGGCACCGACAA 59.888 61.111 0.00 0.00 32.56 3.18
3393 4327 1.227263 CACTATCGCCGGTGGAAGG 60.227 63.158 16.49 5.94 0.00 3.46
3394 4328 0.249073 CTCACTATCGCCGGTGGAAG 60.249 60.000 16.49 14.89 34.57 3.46
3395 4329 1.813859 CTCACTATCGCCGGTGGAA 59.186 57.895 16.49 2.36 34.57 3.53
3396 4330 2.782222 GCTCACTATCGCCGGTGGA 61.782 63.158 16.49 7.56 34.57 4.02
3397 4331 2.279517 GCTCACTATCGCCGGTGG 60.280 66.667 16.49 1.08 34.57 4.61
3398 4332 2.279517 GGCTCACTATCGCCGGTG 60.280 66.667 9.28 9.28 36.45 4.94
3402 4336 2.336809 CCTCGGCTCACTATCGCC 59.663 66.667 0.00 0.00 42.86 5.54
3403 4337 2.355244 GCCTCGGCTCACTATCGC 60.355 66.667 0.00 0.00 38.26 4.58
3404 4338 1.739338 AAGGCCTCGGCTCACTATCG 61.739 60.000 5.23 0.00 37.50 2.92
3405 4339 0.032815 GAAGGCCTCGGCTCACTATC 59.967 60.000 5.23 0.00 37.50 2.08
3406 4340 0.687757 TGAAGGCCTCGGCTCACTAT 60.688 55.000 5.23 0.00 37.50 2.12
3407 4341 0.687757 ATGAAGGCCTCGGCTCACTA 60.688 55.000 5.23 0.00 37.50 2.74
3408 4342 1.965754 GATGAAGGCCTCGGCTCACT 61.966 60.000 5.23 0.00 37.50 3.41
3409 4343 1.522580 GATGAAGGCCTCGGCTCAC 60.523 63.158 5.23 0.00 37.50 3.51
3410 4344 2.903357 GATGAAGGCCTCGGCTCA 59.097 61.111 5.23 6.51 37.50 4.26
3411 4345 2.279784 CGATGAAGGCCTCGGCTC 60.280 66.667 5.23 0.00 37.50 4.70
3412 4346 4.537433 GCGATGAAGGCCTCGGCT 62.537 66.667 5.23 0.00 41.24 5.52
3419 4353 3.577313 GAAGGCGGCGATGAAGGC 61.577 66.667 12.98 0.00 0.00 4.35
3420 4354 3.264897 CGAAGGCGGCGATGAAGG 61.265 66.667 12.98 0.00 0.00 3.46
3421 4355 3.929948 GCGAAGGCGGCGATGAAG 61.930 66.667 12.98 0.00 38.16 3.02
3451 4385 1.262950 CTCACTATCGAGCTGTCGGAG 59.737 57.143 0.00 0.00 46.80 4.63
3452 4386 1.300481 CTCACTATCGAGCTGTCGGA 58.700 55.000 0.00 0.00 46.80 4.55
3453 4387 3.835686 CTCACTATCGAGCTGTCGG 57.164 57.895 0.00 0.00 46.80 4.79
3460 4394 1.284408 GCTCCGGCTCACTATCGAG 59.716 63.158 0.00 0.00 36.02 4.04
3461 4395 2.543802 CGCTCCGGCTCACTATCGA 61.544 63.158 0.00 0.00 36.09 3.59
3462 4396 2.050895 CGCTCCGGCTCACTATCG 60.051 66.667 0.00 0.00 36.09 2.92
3463 4397 2.355244 GCGCTCCGGCTCACTATC 60.355 66.667 0.00 0.00 36.09 2.08
3486 4420 1.011968 TCGATTGTGGCGGAAGAACG 61.012 55.000 0.00 0.00 0.00 3.95
3487 4421 1.369625 ATCGATTGTGGCGGAAGAAC 58.630 50.000 0.00 0.00 0.00 3.01
3488 4422 2.971660 TATCGATTGTGGCGGAAGAA 57.028 45.000 1.71 0.00 0.00 2.52
3489 4423 2.754472 CATATCGATTGTGGCGGAAGA 58.246 47.619 1.71 0.00 0.00 2.87
3490 4424 1.195448 GCATATCGATTGTGGCGGAAG 59.805 52.381 1.71 0.00 0.00 3.46
3491 4425 1.202639 AGCATATCGATTGTGGCGGAA 60.203 47.619 1.71 0.00 0.00 4.30
3492 4426 0.392706 AGCATATCGATTGTGGCGGA 59.607 50.000 1.71 0.00 0.00 5.54
3493 4427 1.195448 GAAGCATATCGATTGTGGCGG 59.805 52.381 1.71 0.00 0.00 6.13
3494 4428 2.096565 CAGAAGCATATCGATTGTGGCG 60.097 50.000 1.71 0.00 30.98 5.69
3495 4429 2.874701 ACAGAAGCATATCGATTGTGGC 59.125 45.455 1.71 2.61 38.53 5.01
3496 4430 4.375272 AGACAGAAGCATATCGATTGTGG 58.625 43.478 1.71 0.00 38.53 4.17
3497 4431 4.447054 GGAGACAGAAGCATATCGATTGTG 59.553 45.833 1.71 4.60 39.99 3.33
3498 4432 4.626042 GGAGACAGAAGCATATCGATTGT 58.374 43.478 1.71 0.00 0.00 2.71
3499 4433 3.672397 CGGAGACAGAAGCATATCGATTG 59.328 47.826 1.71 3.19 0.00 2.67
3500 4434 3.858877 GCGGAGACAGAAGCATATCGATT 60.859 47.826 1.71 0.00 0.00 3.34
3501 4435 2.352225 GCGGAGACAGAAGCATATCGAT 60.352 50.000 2.16 2.16 0.00 3.59
3502 4436 1.001268 GCGGAGACAGAAGCATATCGA 60.001 52.381 0.00 0.00 0.00 3.59
3503 4437 1.413382 GCGGAGACAGAAGCATATCG 58.587 55.000 0.00 0.00 0.00 2.92
3504 4438 1.789506 GGCGGAGACAGAAGCATATC 58.210 55.000 0.00 0.00 31.66 1.63
3505 4439 3.997672 GGCGGAGACAGAAGCATAT 57.002 52.632 0.00 0.00 31.66 1.78
3515 4449 0.036388 TCCTTGACAATGGCGGAGAC 60.036 55.000 0.00 0.00 0.00 3.36
3516 4450 0.250234 CTCCTTGACAATGGCGGAGA 59.750 55.000 13.48 0.00 43.02 3.71
3517 4451 1.372087 GCTCCTTGACAATGGCGGAG 61.372 60.000 14.13 14.13 43.18 4.63
3518 4452 1.377202 GCTCCTTGACAATGGCGGA 60.377 57.895 0.00 0.00 0.00 5.54
3519 4453 2.753966 CGCTCCTTGACAATGGCGG 61.754 63.158 16.43 3.92 39.12 6.13
3520 4454 2.034879 ACGCTCCTTGACAATGGCG 61.035 57.895 20.13 20.13 46.47 5.69
3521 4455 1.503542 CACGCTCCTTGACAATGGC 59.496 57.895 0.00 0.00 0.00 4.40
3522 4456 1.308069 CCCACGCTCCTTGACAATGG 61.308 60.000 0.00 0.00 0.00 3.16
3523 4457 0.321564 TCCCACGCTCCTTGACAATG 60.322 55.000 0.00 0.00 0.00 2.82
3524 4458 0.036010 CTCCCACGCTCCTTGACAAT 60.036 55.000 0.00 0.00 0.00 2.71
3525 4459 1.371183 CTCCCACGCTCCTTGACAA 59.629 57.895 0.00 0.00 0.00 3.18
3526 4460 2.583441 CCTCCCACGCTCCTTGACA 61.583 63.158 0.00 0.00 0.00 3.58
3527 4461 2.266055 CCTCCCACGCTCCTTGAC 59.734 66.667 0.00 0.00 0.00 3.18
3528 4462 2.119611 TCCTCCCACGCTCCTTGA 59.880 61.111 0.00 0.00 0.00 3.02
3529 4463 2.266055 GTCCTCCCACGCTCCTTG 59.734 66.667 0.00 0.00 0.00 3.61
3530 4464 3.382832 CGTCCTCCCACGCTCCTT 61.383 66.667 0.00 0.00 31.96 3.36
3533 4467 4.131088 GTCCGTCCTCCCACGCTC 62.131 72.222 0.00 0.00 38.52 5.03
3537 4471 3.310860 ATTGCGTCCGTCCTCCCAC 62.311 63.158 0.00 0.00 0.00 4.61
3538 4472 3.000819 ATTGCGTCCGTCCTCCCA 61.001 61.111 0.00 0.00 0.00 4.37
3539 4473 2.511600 CATTGCGTCCGTCCTCCC 60.512 66.667 0.00 0.00 0.00 4.30
3540 4474 1.810030 GTCATTGCGTCCGTCCTCC 60.810 63.158 0.00 0.00 0.00 4.30
3541 4475 1.810030 GGTCATTGCGTCCGTCCTC 60.810 63.158 0.00 0.00 0.00 3.71
3542 4476 2.264794 GGTCATTGCGTCCGTCCT 59.735 61.111 0.00 0.00 0.00 3.85
3543 4477 2.047655 TGGTCATTGCGTCCGTCC 60.048 61.111 0.00 0.00 0.00 4.79
3544 4478 2.726691 CGTGGTCATTGCGTCCGTC 61.727 63.158 0.00 0.00 0.00 4.79
3545 4479 2.736995 CGTGGTCATTGCGTCCGT 60.737 61.111 0.00 0.00 0.00 4.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.