Multiple sequence alignment - TraesCS1A01G122200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G122200 chr1A 100.000 4981 0 0 1 4981 137230945 137235925 0.000000e+00 9199
1 TraesCS1A01G122200 chr1D 96.183 4270 94 22 46 4270 124559416 124563661 0.000000e+00 6918
2 TraesCS1A01G122200 chr1D 89.701 301 25 5 4684 4978 124574828 124575128 3.640000e-101 379
3 TraesCS1A01G122200 chr1D 91.617 167 11 2 4399 4565 124565852 124566015 1.390000e-55 228
4 TraesCS1A01G122200 chr1D 96.078 102 3 1 4588 4689 124566003 124566103 1.110000e-36 165
5 TraesCS1A01G122200 chr1D 88.722 133 10 2 4268 4398 124565318 124565447 1.860000e-34 158
6 TraesCS1A01G122200 chr1B 94.106 2443 64 19 1976 4398 188791945 188794327 0.000000e+00 3640
7 TraesCS1A01G122200 chr1B 93.849 1967 68 13 46 1977 188789915 188791863 0.000000e+00 2913
8 TraesCS1A01G122200 chr1B 87.349 166 16 3 4399 4564 188794725 188794885 8.520000e-43 185
9 TraesCS1A01G122200 chr2A 79.114 158 26 6 4208 4360 611348307 611348462 8.820000e-18 102


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G122200 chr1A 137230945 137235925 4980 False 9199.00 9199 100.000 1 4981 1 chr1A.!!$F1 4980
1 TraesCS1A01G122200 chr1D 124559416 124566103 6687 False 1867.25 6918 93.150 46 4689 4 chr1D.!!$F2 4643
2 TraesCS1A01G122200 chr1B 188789915 188794885 4970 False 2246.00 3640 91.768 46 4564 3 chr1B.!!$F1 4518

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
948 971 1.071471 CCCTTGTGTCTGCCGTTCT 59.929 57.895 0.0 0.0 0.0 3.01 F
2732 2863 0.034896 TTGAGGGAGAAGTTGACGGC 59.965 55.000 0.0 0.0 0.0 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2833 2964 0.461548 TGTGAGCTCCAATCGCCTAG 59.538 55.0 12.15 0.0 0.0 3.02 R
4726 6946 0.462375 CGTGGGAATGGGTCGTGATA 59.538 55.0 0.00 0.0 0.0 2.15 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.878953 GTGTGTGGATCCGTGAAAGT 58.121 50.000 7.39 0.00 0.00 2.66
20 21 2.218603 GTGTGTGGATCCGTGAAAGTT 58.781 47.619 7.39 0.00 0.00 2.66
21 22 2.616842 GTGTGTGGATCCGTGAAAGTTT 59.383 45.455 7.39 0.00 0.00 2.66
22 23 2.616376 TGTGTGGATCCGTGAAAGTTTG 59.384 45.455 7.39 0.00 0.00 2.93
23 24 2.616842 GTGTGGATCCGTGAAAGTTTGT 59.383 45.455 7.39 0.00 0.00 2.83
24 25 3.810941 GTGTGGATCCGTGAAAGTTTGTA 59.189 43.478 7.39 0.00 0.00 2.41
25 26 4.273969 GTGTGGATCCGTGAAAGTTTGTAA 59.726 41.667 7.39 0.00 0.00 2.41
26 27 5.048991 GTGTGGATCCGTGAAAGTTTGTAAT 60.049 40.000 7.39 0.00 0.00 1.89
27 28 5.533154 TGTGGATCCGTGAAAGTTTGTAATT 59.467 36.000 7.39 0.00 0.00 1.40
28 29 6.711194 TGTGGATCCGTGAAAGTTTGTAATTA 59.289 34.615 7.39 0.00 0.00 1.40
29 30 7.228906 TGTGGATCCGTGAAAGTTTGTAATTAA 59.771 33.333 7.39 0.00 0.00 1.40
30 31 7.536281 GTGGATCCGTGAAAGTTTGTAATTAAC 59.464 37.037 7.39 0.00 0.00 2.01
31 32 7.446013 TGGATCCGTGAAAGTTTGTAATTAACT 59.554 33.333 7.39 0.00 37.43 2.24
32 33 7.961283 GGATCCGTGAAAGTTTGTAATTAACTC 59.039 37.037 0.00 0.00 34.88 3.01
33 34 7.789273 TCCGTGAAAGTTTGTAATTAACTCA 57.211 32.000 0.00 0.00 34.88 3.41
34 35 8.385898 TCCGTGAAAGTTTGTAATTAACTCAT 57.614 30.769 0.00 0.00 34.88 2.90
35 36 8.842280 TCCGTGAAAGTTTGTAATTAACTCATT 58.158 29.630 0.00 0.00 34.88 2.57
36 37 9.458374 CCGTGAAAGTTTGTAATTAACTCATTT 57.542 29.630 0.00 0.00 34.88 2.32
200 201 2.100989 AGATCCGTAAGAGACCACCAC 58.899 52.381 0.00 0.00 43.02 4.16
201 202 1.822990 GATCCGTAAGAGACCACCACA 59.177 52.381 0.00 0.00 43.02 4.17
573 596 2.295349 TCCTCAGTCGTTACGCTTTCTT 59.705 45.455 0.00 0.00 0.00 2.52
628 651 2.031870 CCTGCCACCCTAATTTTAGCC 58.968 52.381 0.00 0.00 0.00 3.93
703 726 3.124921 CGGCTGGGTTTGGCTACG 61.125 66.667 0.00 0.00 0.00 3.51
796 819 2.910482 CCGTGTTTCTTGATGCGATTTG 59.090 45.455 0.00 0.00 0.00 2.32
804 827 3.750652 TCTTGATGCGATTTGTGCAAGTA 59.249 39.130 0.00 0.00 46.87 2.24
848 871 3.991242 GGGTCTAGAGCCCGAAATC 57.009 57.895 27.52 3.16 42.92 2.17
853 876 4.370049 GGTCTAGAGCCCGAAATCTTAAC 58.630 47.826 10.97 0.00 0.00 2.01
867 890 7.148623 CCGAAATCTTAACTTCTAGTCACCAAC 60.149 40.741 0.00 0.00 0.00 3.77
904 927 1.209504 CCACCTTCTTGGCGATCCTAA 59.790 52.381 0.00 0.00 40.22 2.69
937 960 1.549203 CTGATTGGGTTCCCCTTGTG 58.451 55.000 5.34 0.00 45.70 3.33
948 971 1.071471 CCCTTGTGTCTGCCGTTCT 59.929 57.895 0.00 0.00 0.00 3.01
1068 1095 0.251077 ACCTGCCTCTGCTTTTCCTG 60.251 55.000 0.00 0.00 38.71 3.86
1181 1208 1.344496 CCCTCCTCCTTCAGGTACCAT 60.344 57.143 15.94 0.00 43.95 3.55
1326 1373 4.714308 AGCTCTGCCTCTTCATTTAGTACT 59.286 41.667 0.00 0.00 0.00 2.73
1466 1513 2.224159 TGGTGGAGGGCTCAAGGAC 61.224 63.158 0.00 0.00 0.00 3.85
1503 1550 8.324306 TCCTCAAGAATGTAAGAATCTGATTGT 58.676 33.333 7.78 0.08 0.00 2.71
1587 1634 7.654116 GGATGAGCTAATAGGTTAACAGAGAAC 59.346 40.741 8.10 0.00 0.00 3.01
1594 1641 3.926616 AGGTTAACAGAGAACGGTCATG 58.073 45.455 1.87 3.34 0.00 3.07
1776 1823 1.207811 GCATTAGGCAAGGCAAACCAT 59.792 47.619 0.00 0.00 41.09 3.55
1825 1872 1.467342 GTGTGATGCTTTCGGGGTTAC 59.533 52.381 0.00 0.00 0.00 2.50
2028 2159 8.877779 CCTGTATTCGATATCATTCTTCAATCC 58.122 37.037 3.12 0.00 0.00 3.01
2068 2199 8.538701 TGAAATATGCCCATTTTCATTTGTAGT 58.461 29.630 11.21 0.00 35.16 2.73
2126 2257 6.125589 ACCAAGGCAAAAATAATCAATGGT 57.874 33.333 0.00 0.00 32.86 3.55
2177 2308 2.772191 ACCACCACCACTGCCTCA 60.772 61.111 0.00 0.00 0.00 3.86
2189 2320 0.683973 CTGCCTCAGTGTCACTTCCT 59.316 55.000 1.67 0.00 0.00 3.36
2228 2359 8.814038 ACATTGATGATGATGATGATGATGAT 57.186 30.769 0.00 0.00 39.15 2.45
2229 2360 8.680903 ACATTGATGATGATGATGATGATGATG 58.319 33.333 0.00 0.00 39.15 3.07
2230 2361 8.896744 CATTGATGATGATGATGATGATGATGA 58.103 33.333 0.00 0.00 38.03 2.92
2231 2362 9.638176 ATTGATGATGATGATGATGATGATGAT 57.362 29.630 0.00 0.00 0.00 2.45
2232 2363 8.442632 TGATGATGATGATGATGATGATGATG 57.557 34.615 0.00 0.00 0.00 3.07
2233 2364 8.267183 TGATGATGATGATGATGATGATGATGA 58.733 33.333 0.00 0.00 0.00 2.92
2732 2863 0.034896 TTGAGGGAGAAGTTGACGGC 59.965 55.000 0.00 0.00 0.00 5.68
2833 2964 3.686726 CAGCAGGAGAATTCACACCTTAC 59.313 47.826 8.44 7.80 0.00 2.34
3504 3636 5.397326 ACACATCGATCGATATGTCATCAG 58.603 41.667 30.91 17.74 37.70 2.90
3899 4034 3.010584 AGGCCACAATACCAGAAGATGTT 59.989 43.478 5.01 0.00 0.00 2.71
4051 4191 6.942532 TCTGGATGTATATTTTTGCCAGAC 57.057 37.500 0.00 0.00 43.81 3.51
4171 4311 5.123820 TGACCTTTAATCTCAATCTTTGCCG 59.876 40.000 0.00 0.00 0.00 5.69
4217 4370 3.884169 TCACTGTCGTTATTTGCAAAGC 58.116 40.909 18.19 9.22 0.00 3.51
4303 6115 2.267351 TTGAGCAACACCCGGCATG 61.267 57.895 0.00 0.00 0.00 4.06
4339 6151 2.223340 GCACACAGTCAAAGACCAACAG 60.223 50.000 0.00 0.00 32.18 3.16
4387 6201 8.497910 AACCAACATATGTAGAGTCATAGGAT 57.502 34.615 9.21 0.00 36.16 3.24
4400 6620 2.234661 TCATAGGATTGGCGCTATGGAG 59.765 50.000 7.64 0.00 32.83 3.86
4412 6632 5.061179 GGCGCTATGGAGGATTTTAACTTA 58.939 41.667 7.64 0.00 0.00 2.24
4433 6653 8.451908 ACTTATAGTGGAATATTTGGCTTCAC 57.548 34.615 0.00 0.00 0.00 3.18
4434 6654 8.052748 ACTTATAGTGGAATATTTGGCTTCACA 58.947 33.333 0.00 0.00 0.00 3.58
4435 6655 8.995027 TTATAGTGGAATATTTGGCTTCACAT 57.005 30.769 0.00 0.00 0.00 3.21
4512 6732 8.995419 TTTTGCAAACTACTTTTGTTTTTCAC 57.005 26.923 12.39 0.00 45.70 3.18
4589 6809 8.480643 TTTTAGGGTAATTGTTGTTGTTGTTG 57.519 30.769 0.00 0.00 0.00 3.33
4590 6810 5.669164 AGGGTAATTGTTGTTGTTGTTGT 57.331 34.783 0.00 0.00 0.00 3.32
4591 6811 6.043854 AGGGTAATTGTTGTTGTTGTTGTT 57.956 33.333 0.00 0.00 0.00 2.83
4592 6812 5.872070 AGGGTAATTGTTGTTGTTGTTGTTG 59.128 36.000 0.00 0.00 0.00 3.33
4593 6813 5.639931 GGGTAATTGTTGTTGTTGTTGTTGT 59.360 36.000 0.00 0.00 0.00 3.32
4594 6814 6.147985 GGGTAATTGTTGTTGTTGTTGTTGTT 59.852 34.615 0.00 0.00 0.00 2.83
4595 6815 7.012358 GGTAATTGTTGTTGTTGTTGTTGTTG 58.988 34.615 0.00 0.00 0.00 3.33
4596 6816 6.610741 AATTGTTGTTGTTGTTGTTGTTGT 57.389 29.167 0.00 0.00 0.00 3.32
4597 6817 6.610741 ATTGTTGTTGTTGTTGTTGTTGTT 57.389 29.167 0.00 0.00 0.00 2.83
4598 6818 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
4599 6819 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
4600 6820 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
4601 6821 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
4602 6822 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
4603 6823 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
4604 6824 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
4689 6909 0.908198 AGACCTCACATGGAAGCCTC 59.092 55.000 0.00 0.00 0.00 4.70
4690 6910 0.908198 GACCTCACATGGAAGCCTCT 59.092 55.000 0.00 0.00 0.00 3.69
4691 6911 0.908198 ACCTCACATGGAAGCCTCTC 59.092 55.000 0.00 0.00 0.00 3.20
4692 6912 0.179936 CCTCACATGGAAGCCTCTCC 59.820 60.000 0.00 0.00 35.88 3.71
4693 6913 0.179936 CTCACATGGAAGCCTCTCCC 59.820 60.000 0.00 0.00 34.22 4.30
4694 6914 0.252881 TCACATGGAAGCCTCTCCCT 60.253 55.000 0.00 0.00 34.22 4.20
4695 6915 0.179936 CACATGGAAGCCTCTCCCTC 59.820 60.000 0.00 0.00 34.22 4.30
4696 6916 0.043940 ACATGGAAGCCTCTCCCTCT 59.956 55.000 0.00 0.00 34.22 3.69
4697 6917 1.211456 CATGGAAGCCTCTCCCTCTT 58.789 55.000 0.00 0.00 34.22 2.85
4698 6918 1.140652 CATGGAAGCCTCTCCCTCTTC 59.859 57.143 0.00 0.00 36.42 2.87
4699 6919 0.415429 TGGAAGCCTCTCCCTCTTCT 59.585 55.000 0.00 0.00 37.11 2.85
4700 6920 1.203364 TGGAAGCCTCTCCCTCTTCTT 60.203 52.381 0.00 0.00 37.11 2.52
4701 6921 1.484653 GGAAGCCTCTCCCTCTTCTTC 59.515 57.143 0.00 0.00 37.11 2.87
4702 6922 1.484653 GAAGCCTCTCCCTCTTCTTCC 59.515 57.143 0.00 0.00 34.83 3.46
4703 6923 0.715987 AGCCTCTCCCTCTTCTTCCT 59.284 55.000 0.00 0.00 0.00 3.36
4704 6924 1.080329 AGCCTCTCCCTCTTCTTCCTT 59.920 52.381 0.00 0.00 0.00 3.36
4705 6925 1.484653 GCCTCTCCCTCTTCTTCCTTC 59.515 57.143 0.00 0.00 0.00 3.46
4706 6926 2.892301 GCCTCTCCCTCTTCTTCCTTCT 60.892 54.545 0.00 0.00 0.00 2.85
4707 6927 3.449918 CCTCTCCCTCTTCTTCCTTCTT 58.550 50.000 0.00 0.00 0.00 2.52
4708 6928 3.843619 CCTCTCCCTCTTCTTCCTTCTTT 59.156 47.826 0.00 0.00 0.00 2.52
4709 6929 4.081142 CCTCTCCCTCTTCTTCCTTCTTTC 60.081 50.000 0.00 0.00 0.00 2.62
4710 6930 3.841255 TCTCCCTCTTCTTCCTTCTTTCC 59.159 47.826 0.00 0.00 0.00 3.13
4711 6931 3.843619 CTCCCTCTTCTTCCTTCTTTCCT 59.156 47.826 0.00 0.00 0.00 3.36
4712 6932 3.841255 TCCCTCTTCTTCCTTCTTTCCTC 59.159 47.826 0.00 0.00 0.00 3.71
4713 6933 3.584848 CCCTCTTCTTCCTTCTTTCCTCA 59.415 47.826 0.00 0.00 0.00 3.86
4714 6934 4.042187 CCCTCTTCTTCCTTCTTTCCTCAA 59.958 45.833 0.00 0.00 0.00 3.02
4715 6935 5.456763 CCCTCTTCTTCCTTCTTTCCTCAAA 60.457 44.000 0.00 0.00 0.00 2.69
4716 6936 6.244654 CCTCTTCTTCCTTCTTTCCTCAAAT 58.755 40.000 0.00 0.00 0.00 2.32
4717 6937 6.374053 CCTCTTCTTCCTTCTTTCCTCAAATC 59.626 42.308 0.00 0.00 0.00 2.17
4718 6938 6.241645 TCTTCTTCCTTCTTTCCTCAAATCC 58.758 40.000 0.00 0.00 0.00 3.01
4719 6939 4.923415 TCTTCCTTCTTTCCTCAAATCCC 58.077 43.478 0.00 0.00 0.00 3.85
4720 6940 3.739401 TCCTTCTTTCCTCAAATCCCC 57.261 47.619 0.00 0.00 0.00 4.81
4721 6941 3.269034 TCCTTCTTTCCTCAAATCCCCT 58.731 45.455 0.00 0.00 0.00 4.79
4722 6942 3.267031 TCCTTCTTTCCTCAAATCCCCTC 59.733 47.826 0.00 0.00 0.00 4.30
4723 6943 3.625853 CTTCTTTCCTCAAATCCCCTCC 58.374 50.000 0.00 0.00 0.00 4.30
4724 6944 2.934722 TCTTTCCTCAAATCCCCTCCT 58.065 47.619 0.00 0.00 0.00 3.69
4725 6945 3.269034 TCTTTCCTCAAATCCCCTCCTT 58.731 45.455 0.00 0.00 0.00 3.36
4726 6946 3.662642 TCTTTCCTCAAATCCCCTCCTTT 59.337 43.478 0.00 0.00 0.00 3.11
4727 6947 4.855599 TCTTTCCTCAAATCCCCTCCTTTA 59.144 41.667 0.00 0.00 0.00 1.85
4728 6948 5.496168 TCTTTCCTCAAATCCCCTCCTTTAT 59.504 40.000 0.00 0.00 0.00 1.40
4729 6949 5.388599 TTCCTCAAATCCCCTCCTTTATC 57.611 43.478 0.00 0.00 0.00 1.75
4730 6950 4.379875 TCCTCAAATCCCCTCCTTTATCA 58.620 43.478 0.00 0.00 0.00 2.15
4731 6951 4.166144 TCCTCAAATCCCCTCCTTTATCAC 59.834 45.833 0.00 0.00 0.00 3.06
4732 6952 4.130118 CTCAAATCCCCTCCTTTATCACG 58.870 47.826 0.00 0.00 0.00 4.35
4733 6953 3.778075 TCAAATCCCCTCCTTTATCACGA 59.222 43.478 0.00 0.00 0.00 4.35
4734 6954 3.840124 AATCCCCTCCTTTATCACGAC 57.160 47.619 0.00 0.00 0.00 4.34
4735 6955 1.492764 TCCCCTCCTTTATCACGACC 58.507 55.000 0.00 0.00 0.00 4.79
4736 6956 0.468648 CCCCTCCTTTATCACGACCC 59.531 60.000 0.00 0.00 0.00 4.46
4737 6957 1.200519 CCCTCCTTTATCACGACCCA 58.799 55.000 0.00 0.00 0.00 4.51
4738 6958 1.768870 CCCTCCTTTATCACGACCCAT 59.231 52.381 0.00 0.00 0.00 4.00
4739 6959 2.172717 CCCTCCTTTATCACGACCCATT 59.827 50.000 0.00 0.00 0.00 3.16
4740 6960 3.467803 CCTCCTTTATCACGACCCATTC 58.532 50.000 0.00 0.00 0.00 2.67
4741 6961 3.467803 CTCCTTTATCACGACCCATTCC 58.532 50.000 0.00 0.00 0.00 3.01
4742 6962 2.171870 TCCTTTATCACGACCCATTCCC 59.828 50.000 0.00 0.00 0.00 3.97
4743 6963 2.092646 CCTTTATCACGACCCATTCCCA 60.093 50.000 0.00 0.00 0.00 4.37
4744 6964 2.702592 TTATCACGACCCATTCCCAC 57.297 50.000 0.00 0.00 0.00 4.61
4745 6965 0.462375 TATCACGACCCATTCCCACG 59.538 55.000 0.00 0.00 0.00 4.94
4746 6966 1.550130 ATCACGACCCATTCCCACGT 61.550 55.000 0.00 0.00 37.68 4.49
4747 6967 1.740296 CACGACCCATTCCCACGTC 60.740 63.158 0.00 0.00 35.05 4.34
4748 6968 2.508439 CGACCCATTCCCACGTCG 60.508 66.667 0.00 0.00 41.70 5.12
4749 6969 2.818274 GACCCATTCCCACGTCGC 60.818 66.667 0.00 0.00 0.00 5.19
4750 6970 3.310860 GACCCATTCCCACGTCGCT 62.311 63.158 0.00 0.00 0.00 4.93
4751 6971 2.511600 CCCATTCCCACGTCGCTC 60.512 66.667 0.00 0.00 0.00 5.03
4752 6972 2.511600 CCATTCCCACGTCGCTCC 60.512 66.667 0.00 0.00 0.00 4.70
4753 6973 2.579201 CATTCCCACGTCGCTCCT 59.421 61.111 0.00 0.00 0.00 3.69
4754 6974 1.811266 CATTCCCACGTCGCTCCTG 60.811 63.158 0.00 0.00 0.00 3.86
4755 6975 2.283529 ATTCCCACGTCGCTCCTGT 61.284 57.895 0.00 0.00 0.00 4.00
4756 6976 2.507110 ATTCCCACGTCGCTCCTGTG 62.507 60.000 0.00 0.00 0.00 3.66
4783 7003 4.832608 GCGGAACCCTAGCCCGTG 62.833 72.222 0.00 0.00 44.63 4.94
4784 7004 4.157120 CGGAACCCTAGCCCGTGG 62.157 72.222 0.00 0.00 38.55 4.94
4794 7014 2.516225 GCCCGTGGCCACTAATCC 60.516 66.667 32.28 12.89 44.06 3.01
4795 7015 2.192175 CCCGTGGCCACTAATCCC 59.808 66.667 32.28 5.70 0.00 3.85
4796 7016 2.375345 CCCGTGGCCACTAATCCCT 61.375 63.158 32.28 0.00 0.00 4.20
4797 7017 1.146263 CCGTGGCCACTAATCCCTC 59.854 63.158 32.28 4.09 0.00 4.30
4798 7018 1.146263 CGTGGCCACTAATCCCTCC 59.854 63.158 32.28 3.29 0.00 4.30
4799 7019 1.622607 CGTGGCCACTAATCCCTCCA 61.623 60.000 32.28 0.00 0.00 3.86
4800 7020 0.846693 GTGGCCACTAATCCCTCCAT 59.153 55.000 29.12 0.00 0.00 3.41
4801 7021 0.846015 TGGCCACTAATCCCTCCATG 59.154 55.000 0.00 0.00 0.00 3.66
4802 7022 0.846693 GGCCACTAATCCCTCCATGT 59.153 55.000 0.00 0.00 0.00 3.21
4803 7023 1.477558 GGCCACTAATCCCTCCATGTG 60.478 57.143 0.00 0.00 0.00 3.21
4804 7024 1.972872 CCACTAATCCCTCCATGTGC 58.027 55.000 0.00 0.00 0.00 4.57
4805 7025 1.477558 CCACTAATCCCTCCATGTGCC 60.478 57.143 0.00 0.00 0.00 5.01
4806 7026 1.492176 CACTAATCCCTCCATGTGCCT 59.508 52.381 0.00 0.00 0.00 4.75
4807 7027 1.771255 ACTAATCCCTCCATGTGCCTC 59.229 52.381 0.00 0.00 0.00 4.70
4808 7028 1.072965 CTAATCCCTCCATGTGCCTCC 59.927 57.143 0.00 0.00 0.00 4.30
4809 7029 0.625683 AATCCCTCCATGTGCCTCCT 60.626 55.000 0.00 0.00 0.00 3.69
4810 7030 1.059006 ATCCCTCCATGTGCCTCCTC 61.059 60.000 0.00 0.00 0.00 3.71
4811 7031 1.692042 CCCTCCATGTGCCTCCTCT 60.692 63.158 0.00 0.00 0.00 3.69
4812 7032 1.694133 CCCTCCATGTGCCTCCTCTC 61.694 65.000 0.00 0.00 0.00 3.20
4813 7033 1.694133 CCTCCATGTGCCTCCTCTCC 61.694 65.000 0.00 0.00 0.00 3.71
4814 7034 1.690633 TCCATGTGCCTCCTCTCCC 60.691 63.158 0.00 0.00 0.00 4.30
4815 7035 1.692042 CCATGTGCCTCCTCTCCCT 60.692 63.158 0.00 0.00 0.00 4.20
4816 7036 1.277580 CCATGTGCCTCCTCTCCCTT 61.278 60.000 0.00 0.00 0.00 3.95
4817 7037 0.107312 CATGTGCCTCCTCTCCCTTG 60.107 60.000 0.00 0.00 0.00 3.61
4818 7038 1.919600 ATGTGCCTCCTCTCCCTTGC 61.920 60.000 0.00 0.00 0.00 4.01
4819 7039 3.011517 TGCCTCCTCTCCCTTGCC 61.012 66.667 0.00 0.00 0.00 4.52
4820 7040 4.168291 GCCTCCTCTCCCTTGCCG 62.168 72.222 0.00 0.00 0.00 5.69
4821 7041 2.685380 CCTCCTCTCCCTTGCCGT 60.685 66.667 0.00 0.00 0.00 5.68
4822 7042 2.726351 CCTCCTCTCCCTTGCCGTC 61.726 68.421 0.00 0.00 0.00 4.79
4823 7043 3.068691 TCCTCTCCCTTGCCGTCG 61.069 66.667 0.00 0.00 0.00 5.12
4824 7044 4.821589 CCTCTCCCTTGCCGTCGC 62.822 72.222 0.00 0.00 0.00 5.19
4825 7045 3.764466 CTCTCCCTTGCCGTCGCT 61.764 66.667 0.00 0.00 35.36 4.93
4826 7046 2.361992 TCTCCCTTGCCGTCGCTA 60.362 61.111 0.00 0.00 35.36 4.26
4827 7047 2.105128 CTCCCTTGCCGTCGCTAG 59.895 66.667 0.00 0.00 37.56 3.42
4828 7048 2.361992 TCCCTTGCCGTCGCTAGA 60.362 61.111 0.00 0.00 39.88 2.43
4829 7049 2.105128 CCCTTGCCGTCGCTAGAG 59.895 66.667 0.00 0.00 39.88 2.43
4830 7050 2.105128 CCTTGCCGTCGCTAGAGG 59.895 66.667 0.00 0.00 39.88 3.69
4831 7051 2.415608 CCTTGCCGTCGCTAGAGGA 61.416 63.158 0.00 0.00 39.88 3.71
4832 7052 1.736586 CTTGCCGTCGCTAGAGGAT 59.263 57.895 0.00 0.00 39.88 3.24
4833 7053 0.596083 CTTGCCGTCGCTAGAGGATG 60.596 60.000 0.00 0.00 39.88 3.51
4834 7054 1.320344 TTGCCGTCGCTAGAGGATGT 61.320 55.000 0.00 0.00 34.40 3.06
4835 7055 1.008309 GCCGTCGCTAGAGGATGTC 60.008 63.158 0.00 0.00 34.40 3.06
4836 7056 1.280142 CCGTCGCTAGAGGATGTCG 59.720 63.158 0.00 0.00 34.40 4.35
4837 7057 1.280142 CGTCGCTAGAGGATGTCGG 59.720 63.158 0.00 0.00 34.40 4.79
4838 7058 1.437772 CGTCGCTAGAGGATGTCGGT 61.438 60.000 0.00 0.00 34.40 4.69
4839 7059 0.029567 GTCGCTAGAGGATGTCGGTG 59.970 60.000 0.00 0.00 0.00 4.94
4840 7060 1.101635 TCGCTAGAGGATGTCGGTGG 61.102 60.000 0.00 0.00 0.00 4.61
4841 7061 1.742768 GCTAGAGGATGTCGGTGGG 59.257 63.158 0.00 0.00 0.00 4.61
4842 7062 1.742768 CTAGAGGATGTCGGTGGGC 59.257 63.158 0.00 0.00 0.00 5.36
4843 7063 0.757188 CTAGAGGATGTCGGTGGGCT 60.757 60.000 0.00 0.00 0.00 5.19
4844 7064 0.554305 TAGAGGATGTCGGTGGGCTA 59.446 55.000 0.00 0.00 0.00 3.93
4845 7065 0.325296 AGAGGATGTCGGTGGGCTAA 60.325 55.000 0.00 0.00 0.00 3.09
4846 7066 0.105039 GAGGATGTCGGTGGGCTAAG 59.895 60.000 0.00 0.00 0.00 2.18
4847 7067 0.325296 AGGATGTCGGTGGGCTAAGA 60.325 55.000 0.00 0.00 0.00 2.10
4848 7068 0.179081 GGATGTCGGTGGGCTAAGAC 60.179 60.000 1.66 1.66 0.00 3.01
4849 7069 0.179081 GATGTCGGTGGGCTAAGACC 60.179 60.000 5.53 0.00 33.04 3.85
4850 7070 0.617820 ATGTCGGTGGGCTAAGACCT 60.618 55.000 5.53 0.00 33.04 3.85
4851 7071 1.255667 TGTCGGTGGGCTAAGACCTC 61.256 60.000 5.53 0.00 33.04 3.85
4852 7072 0.971447 GTCGGTGGGCTAAGACCTCT 60.971 60.000 0.00 0.00 0.00 3.69
4853 7073 0.683504 TCGGTGGGCTAAGACCTCTC 60.684 60.000 0.00 0.00 0.00 3.20
4854 7074 1.817209 GGTGGGCTAAGACCTCTCG 59.183 63.158 0.00 0.00 0.00 4.04
4855 7075 1.677637 GGTGGGCTAAGACCTCTCGG 61.678 65.000 0.00 0.00 0.00 4.63
4856 7076 2.058595 TGGGCTAAGACCTCTCGGC 61.059 63.158 0.00 0.00 0.00 5.54
4857 7077 2.413765 GGCTAAGACCTCTCGGCG 59.586 66.667 0.00 0.00 0.00 6.46
4858 7078 2.413765 GCTAAGACCTCTCGGCGG 59.586 66.667 7.21 0.00 0.00 6.13
4859 7079 2.119655 GCTAAGACCTCTCGGCGGA 61.120 63.158 7.21 2.06 0.00 5.54
4860 7080 1.728672 CTAAGACCTCTCGGCGGAC 59.271 63.158 7.21 0.00 0.00 4.79
4861 7081 2.049475 CTAAGACCTCTCGGCGGACG 62.049 65.000 7.21 0.00 46.11 4.79
4885 7105 2.203126 GCGGGGAGCTTCCTCATG 60.203 66.667 11.94 0.00 36.60 3.07
4886 7106 2.203126 CGGGGAGCTTCCTCATGC 60.203 66.667 11.94 0.00 36.60 4.06
4887 7107 3.001514 GGGGAGCTTCCTCATGCA 58.998 61.111 11.94 0.00 36.87 3.96
4888 7108 1.452833 GGGGAGCTTCCTCATGCAC 60.453 63.158 11.94 0.00 36.87 4.57
4889 7109 1.300963 GGGAGCTTCCTCATGCACA 59.699 57.895 2.76 0.00 39.96 4.57
4890 7110 0.106819 GGGAGCTTCCTCATGCACAT 60.107 55.000 2.76 0.00 39.96 3.21
4891 7111 1.022735 GGAGCTTCCTCATGCACATG 58.977 55.000 4.18 4.18 39.96 3.21
4892 7112 1.681166 GGAGCTTCCTCATGCACATGT 60.681 52.381 10.27 0.00 39.96 3.21
4893 7113 1.669779 GAGCTTCCTCATGCACATGTC 59.330 52.381 10.27 0.00 39.72 3.06
4894 7114 1.281287 AGCTTCCTCATGCACATGTCT 59.719 47.619 10.27 0.00 39.72 3.41
4895 7115 1.400846 GCTTCCTCATGCACATGTCTG 59.599 52.381 10.27 0.00 39.72 3.51
4896 7116 2.708051 CTTCCTCATGCACATGTCTGT 58.292 47.619 10.27 0.00 39.72 3.41
4897 7117 2.865119 TCCTCATGCACATGTCTGTT 57.135 45.000 10.27 0.00 39.72 3.16
4898 7118 2.703416 TCCTCATGCACATGTCTGTTC 58.297 47.619 10.27 0.00 39.72 3.18
4899 7119 1.741706 CCTCATGCACATGTCTGTTCC 59.258 52.381 10.27 0.00 39.72 3.62
4900 7120 1.741706 CTCATGCACATGTCTGTTCCC 59.258 52.381 10.27 0.00 39.72 3.97
4901 7121 1.352017 TCATGCACATGTCTGTTCCCT 59.648 47.619 10.27 0.00 39.72 4.20
4902 7122 2.165167 CATGCACATGTCTGTTCCCTT 58.835 47.619 0.00 0.00 31.62 3.95
4903 7123 1.608055 TGCACATGTCTGTTCCCTTG 58.392 50.000 0.00 0.00 31.62 3.61
4904 7124 0.883833 GCACATGTCTGTTCCCTTGG 59.116 55.000 0.00 0.00 31.62 3.61
4905 7125 1.819305 GCACATGTCTGTTCCCTTGGT 60.819 52.381 0.00 0.00 31.62 3.67
4906 7126 2.154462 CACATGTCTGTTCCCTTGGTC 58.846 52.381 0.00 0.00 31.62 4.02
4907 7127 1.270839 ACATGTCTGTTCCCTTGGTCG 60.271 52.381 0.00 0.00 28.70 4.79
4908 7128 0.324943 ATGTCTGTTCCCTTGGTCGG 59.675 55.000 0.00 0.00 0.00 4.79
4909 7129 1.003718 GTCTGTTCCCTTGGTCGGG 60.004 63.158 0.00 0.00 46.13 5.14
4910 7130 2.221299 TCTGTTCCCTTGGTCGGGG 61.221 63.158 0.00 0.00 44.78 5.73
4932 7152 3.154589 CCCCCTCTAAACGTTGCTC 57.845 57.895 0.00 0.00 0.00 4.26
4933 7153 0.323629 CCCCCTCTAAACGTTGCTCA 59.676 55.000 0.00 0.00 0.00 4.26
4934 7154 1.065418 CCCCCTCTAAACGTTGCTCAT 60.065 52.381 0.00 0.00 0.00 2.90
4935 7155 2.169769 CCCCCTCTAAACGTTGCTCATA 59.830 50.000 0.00 0.00 0.00 2.15
4936 7156 3.181454 CCCCCTCTAAACGTTGCTCATAT 60.181 47.826 0.00 0.00 0.00 1.78
4937 7157 4.058817 CCCCTCTAAACGTTGCTCATATC 58.941 47.826 0.00 0.00 0.00 1.63
4938 7158 4.202264 CCCCTCTAAACGTTGCTCATATCT 60.202 45.833 0.00 0.00 0.00 1.98
4939 7159 4.747108 CCCTCTAAACGTTGCTCATATCTG 59.253 45.833 0.00 0.00 0.00 2.90
4940 7160 4.747108 CCTCTAAACGTTGCTCATATCTGG 59.253 45.833 0.00 0.00 0.00 3.86
4941 7161 4.119862 TCTAAACGTTGCTCATATCTGGC 58.880 43.478 0.00 0.00 0.00 4.85
4942 7162 1.290203 AACGTTGCTCATATCTGGCG 58.710 50.000 0.00 0.00 0.00 5.69
4943 7163 0.459899 ACGTTGCTCATATCTGGCGA 59.540 50.000 0.00 0.00 0.00 5.54
4944 7164 0.855349 CGTTGCTCATATCTGGCGAC 59.145 55.000 0.00 0.00 37.11 5.19
4945 7165 1.221414 GTTGCTCATATCTGGCGACC 58.779 55.000 0.00 0.00 35.13 4.79
4946 7166 0.249447 TTGCTCATATCTGGCGACCG 60.249 55.000 0.00 0.00 0.00 4.79
4947 7167 1.106944 TGCTCATATCTGGCGACCGA 61.107 55.000 0.00 0.00 0.00 4.69
4948 7168 0.664767 GCTCATATCTGGCGACCGAC 60.665 60.000 0.00 0.00 0.00 4.79
4949 7169 0.668535 CTCATATCTGGCGACCGACA 59.331 55.000 0.00 0.00 0.00 4.35
4950 7170 1.067060 CTCATATCTGGCGACCGACAA 59.933 52.381 0.00 0.00 29.81 3.18
4951 7171 1.202371 TCATATCTGGCGACCGACAAC 60.202 52.381 0.00 0.00 29.81 3.32
4952 7172 1.112113 ATATCTGGCGACCGACAACT 58.888 50.000 0.00 0.00 29.81 3.16
4953 7173 0.892755 TATCTGGCGACCGACAACTT 59.107 50.000 0.00 0.00 29.81 2.66
4954 7174 0.389948 ATCTGGCGACCGACAACTTC 60.390 55.000 0.00 0.00 29.81 3.01
4955 7175 1.006102 CTGGCGACCGACAACTTCT 60.006 57.895 0.00 0.00 29.81 2.85
4956 7176 1.006571 TGGCGACCGACAACTTCTC 60.007 57.895 0.00 0.00 0.00 2.87
4957 7177 1.289380 GGCGACCGACAACTTCTCT 59.711 57.895 0.00 0.00 0.00 3.10
4958 7178 0.733223 GGCGACCGACAACTTCTCTC 60.733 60.000 0.00 0.00 0.00 3.20
4959 7179 1.066114 GCGACCGACAACTTCTCTCG 61.066 60.000 0.00 0.00 0.00 4.04
4960 7180 0.516001 CGACCGACAACTTCTCTCGA 59.484 55.000 0.00 0.00 0.00 4.04
4961 7181 1.464355 CGACCGACAACTTCTCTCGAG 60.464 57.143 5.93 5.93 0.00 4.04
4962 7182 1.805345 GACCGACAACTTCTCTCGAGA 59.195 52.381 15.70 15.70 35.27 4.04
4963 7183 1.807742 ACCGACAACTTCTCTCGAGAG 59.192 52.381 32.43 32.43 43.36 3.20
4964 7184 1.131504 CCGACAACTTCTCTCGAGAGG 59.868 57.143 35.70 25.10 42.30 3.69
4966 7186 2.159626 CGACAACTTCTCTCGAGAGGTC 60.160 54.545 35.70 30.31 45.42 3.85
4967 7187 2.162809 GACAACTTCTCTCGAGAGGTCC 59.837 54.545 35.70 17.94 45.42 4.46
4968 7188 1.131504 CAACTTCTCTCGAGAGGTCCG 59.868 57.143 35.70 24.13 45.42 4.79
4969 7189 0.393267 ACTTCTCTCGAGAGGTCCGG 60.393 60.000 35.70 23.57 43.12 5.14
4970 7190 1.720694 CTTCTCTCGAGAGGTCCGGC 61.721 65.000 35.70 0.00 42.30 6.13
4971 7191 3.578272 CTCTCGAGAGGTCCGGCG 61.578 72.222 31.01 7.09 38.48 6.46
4972 7192 4.091939 TCTCGAGAGGTCCGGCGA 62.092 66.667 12.08 0.00 0.00 5.54
4973 7193 3.878519 CTCGAGAGGTCCGGCGAC 61.879 72.222 9.30 4.52 38.38 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.878953 ACTTTCACGGATCCACACAC 58.121 50.000 13.41 0.00 0.00 3.82
1 2 2.616376 CAAACTTTCACGGATCCACACA 59.384 45.455 13.41 0.00 0.00 3.72
2 3 2.616842 ACAAACTTTCACGGATCCACAC 59.383 45.455 13.41 0.00 0.00 3.82
3 4 2.925724 ACAAACTTTCACGGATCCACA 58.074 42.857 13.41 0.00 0.00 4.17
4 5 5.622770 ATTACAAACTTTCACGGATCCAC 57.377 39.130 13.41 0.00 0.00 4.02
5 6 7.446013 AGTTAATTACAAACTTTCACGGATCCA 59.554 33.333 13.41 0.00 33.39 3.41
6 7 7.813645 AGTTAATTACAAACTTTCACGGATCC 58.186 34.615 0.00 0.00 33.39 3.36
7 8 8.500773 TGAGTTAATTACAAACTTTCACGGATC 58.499 33.333 0.00 0.00 37.31 3.36
8 9 8.385898 TGAGTTAATTACAAACTTTCACGGAT 57.614 30.769 0.00 0.00 37.31 4.18
9 10 7.789273 TGAGTTAATTACAAACTTTCACGGA 57.211 32.000 0.00 0.00 37.31 4.69
10 11 9.458374 AAATGAGTTAATTACAAACTTTCACGG 57.542 29.630 0.00 0.00 37.31 4.94
31 32 1.337728 ACGTGACGGCTCATCAAATGA 60.338 47.619 10.66 0.00 37.76 2.57
32 33 1.078709 ACGTGACGGCTCATCAAATG 58.921 50.000 10.66 0.00 0.00 2.32
33 34 1.464608 CAACGTGACGGCTCATCAAAT 59.535 47.619 10.66 0.00 0.00 2.32
34 35 0.865111 CAACGTGACGGCTCATCAAA 59.135 50.000 10.66 0.00 0.00 2.69
35 36 0.948623 CCAACGTGACGGCTCATCAA 60.949 55.000 10.66 0.00 0.00 2.57
36 37 1.374125 CCAACGTGACGGCTCATCA 60.374 57.895 10.66 0.00 0.00 3.07
37 38 1.078759 CTCCAACGTGACGGCTCATC 61.079 60.000 10.66 0.00 0.00 2.92
38 39 1.079819 CTCCAACGTGACGGCTCAT 60.080 57.895 10.66 0.00 0.00 2.90
39 40 1.532604 ATCTCCAACGTGACGGCTCA 61.533 55.000 10.66 0.00 0.00 4.26
40 41 1.078759 CATCTCCAACGTGACGGCTC 61.079 60.000 10.66 0.00 0.00 4.70
41 42 1.079819 CATCTCCAACGTGACGGCT 60.080 57.895 10.66 0.00 0.00 5.52
42 43 0.949105 AACATCTCCAACGTGACGGC 60.949 55.000 10.66 0.00 0.00 5.68
43 44 0.790207 CAACATCTCCAACGTGACGG 59.210 55.000 10.66 0.00 0.00 4.79
44 45 1.497991 ACAACATCTCCAACGTGACG 58.502 50.000 2.24 2.24 0.00 4.35
145 146 1.377856 GCCACCTTGAAGGAGCTCC 60.378 63.158 26.22 26.22 37.67 4.70
211 212 0.940126 CGATTGATGGCGGAAGGAAG 59.060 55.000 0.00 0.00 0.00 3.46
440 456 5.170748 GCAAGACAAATTCCGATTCCAAAT 58.829 37.500 0.00 0.00 0.00 2.32
628 651 2.450476 CTCCAATTTGGACAAGGAGGG 58.550 52.381 14.24 0.00 42.67 4.30
703 726 3.086600 CAGACCAGGAGGAGGGGC 61.087 72.222 0.00 0.00 38.69 5.80
796 819 0.464554 GGAGGGGCTGATACTTGCAC 60.465 60.000 0.00 0.00 0.00 4.57
804 827 2.447379 ATGCGAGGAGGGGCTGAT 60.447 61.111 0.00 0.00 0.00 2.90
848 871 9.706691 TTCTAATGTTGGTGACTAGAAGTTAAG 57.293 33.333 0.00 0.00 0.00 1.85
853 876 9.831737 CAAATTTCTAATGTTGGTGACTAGAAG 57.168 33.333 0.00 0.00 0.00 2.85
867 890 6.930722 AGAAGGTGGCAAACAAATTTCTAATG 59.069 34.615 0.00 0.00 0.00 1.90
904 927 0.322975 AATCAGCGGCTCAAGTGTCT 59.677 50.000 0.00 0.00 0.00 3.41
937 960 2.456119 CCGCATGAGAACGGCAGAC 61.456 63.158 0.00 0.00 43.44 3.51
948 971 0.471191 ATCTGAATCCTGCCGCATGA 59.529 50.000 0.00 0.49 0.00 3.07
1400 1447 2.092211 CGGCTCTACGAACACATCAAAC 59.908 50.000 0.00 0.00 35.47 2.93
1466 1513 4.202202 ACATTCTTGAGGATCCTTAGCTCG 60.202 45.833 17.42 9.82 0.00 5.03
1507 1554 8.494347 GTGCAAAAATTACAGCAATCATGTTTA 58.506 29.630 0.00 0.00 38.91 2.01
1776 1823 1.299648 CCATCTTCCAACGAGCCCA 59.700 57.895 0.00 0.00 0.00 5.36
1825 1872 8.154649 AGGGATATTAAAAAGAATGTGTAGCG 57.845 34.615 0.00 0.00 0.00 4.26
1936 1983 4.265073 GTGGAAGATGAACTACCAGCAAT 58.735 43.478 0.00 0.00 0.00 3.56
2028 2159 6.035975 GGGCATATTTCAATTTTCCTTCAACG 59.964 38.462 0.00 0.00 0.00 4.10
2041 2172 9.381033 CTACAAATGAAAATGGGCATATTTCAA 57.619 29.630 12.61 1.22 43.79 2.69
2068 2199 8.924691 GCACAAAGCACAAATATAAATGAAAGA 58.075 29.630 0.00 0.00 44.79 2.52
2102 2233 7.251321 ACCATTGATTATTTTTGCCTTGGTA 57.749 32.000 0.00 0.00 32.26 3.25
2126 2257 2.093181 AGTGGTTGTGTGCACAGAGTTA 60.093 45.455 22.40 0.25 42.94 2.24
2177 2308 2.872038 GCATTTCGGAGGAAGTGACACT 60.872 50.000 1.07 1.07 41.06 3.55
2189 2320 2.155279 TCAATGTTTCGGCATTTCGGA 58.845 42.857 0.00 0.00 37.00 4.55
2254 2385 9.439500 CAAATTCTTCCATAACCATTTCATTGT 57.561 29.630 0.00 0.00 0.00 2.71
2732 2863 5.293079 CCTCTTTAATTTCTTCTCAGCCTCG 59.707 44.000 0.00 0.00 0.00 4.63
2833 2964 0.461548 TGTGAGCTCCAATCGCCTAG 59.538 55.000 12.15 0.00 0.00 3.02
2977 3108 9.582431 AACAAGCATCAAGAATATCATTTTCTG 57.418 29.630 0.00 0.00 33.79 3.02
3504 3636 1.652563 GGTTTCTGGGCGTTGTGAC 59.347 57.895 0.00 0.00 0.00 3.67
3899 4034 1.066502 TCGGCGAATTTGTGGATCTCA 60.067 47.619 7.35 0.00 0.00 3.27
3990 4125 3.449018 CACATGACTCCTAGCTACTGGTT 59.551 47.826 0.00 0.00 0.00 3.67
3991 4126 3.027412 CACATGACTCCTAGCTACTGGT 58.973 50.000 0.00 0.00 0.00 4.00
4026 4162 6.422333 TCTGGCAAAAATATACATCCAGACA 58.578 36.000 4.15 0.00 42.37 3.41
4027 4163 6.942532 TCTGGCAAAAATATACATCCAGAC 57.057 37.500 4.15 0.00 42.37 3.51
4028 4164 5.827797 GGTCTGGCAAAAATATACATCCAGA 59.172 40.000 4.15 4.15 44.26 3.86
4029 4165 5.010012 GGGTCTGGCAAAAATATACATCCAG 59.990 44.000 0.00 0.00 40.56 3.86
4030 4166 4.892934 GGGTCTGGCAAAAATATACATCCA 59.107 41.667 0.00 0.00 0.00 3.41
4051 4191 3.041211 TCCTATCACTTCACCATCAGGG 58.959 50.000 0.00 0.00 44.81 4.45
4171 4311 1.866601 GCACAAACCAGCCAAATGAAC 59.133 47.619 0.00 0.00 0.00 3.18
4258 4411 7.701539 TGTTTTGTATCCACTTGATGCTATT 57.298 32.000 0.00 0.00 37.04 1.73
4259 4412 7.340232 ACATGTTTTGTATCCACTTGATGCTAT 59.660 33.333 0.00 0.00 36.57 2.97
4285 6097 2.115052 ATGCCGGGTGTTGCTCAA 59.885 55.556 2.18 0.00 0.00 3.02
4303 6115 5.159209 ACTGTGTGCGTCTTAGTTATACAC 58.841 41.667 0.00 0.00 37.89 2.90
4363 6175 8.370940 CAATCCTATGACTCTACATATGTTGGT 58.629 37.037 14.77 11.66 33.21 3.67
4364 6176 7.821359 CCAATCCTATGACTCTACATATGTTGG 59.179 40.741 14.77 6.37 35.22 3.77
4365 6177 7.332926 GCCAATCCTATGACTCTACATATGTTG 59.667 40.741 14.77 12.46 33.21 3.33
4366 6178 7.390027 GCCAATCCTATGACTCTACATATGTT 58.610 38.462 14.77 0.00 33.21 2.71
4387 6201 2.435372 AAAATCCTCCATAGCGCCAA 57.565 45.000 2.29 0.00 0.00 4.52
4412 6632 7.902920 AATGTGAAGCCAAATATTCCACTAT 57.097 32.000 0.00 0.00 0.00 2.12
4470 6690 3.489738 GCAAAATAATGGAGCGCTCATGT 60.490 43.478 36.27 22.61 0.00 3.21
4512 6732 1.129811 GGTTACCTGCGACCATTTTCG 59.870 52.381 0.00 0.00 42.15 3.46
4564 6784 8.095169 ACAACAACAACAACAATTACCCTAAAA 58.905 29.630 0.00 0.00 0.00 1.52
4567 6787 6.777213 ACAACAACAACAACAATTACCCTA 57.223 33.333 0.00 0.00 0.00 3.53
4568 6788 5.669164 ACAACAACAACAACAATTACCCT 57.331 34.783 0.00 0.00 0.00 4.34
4569 6789 5.639931 ACAACAACAACAACAACAATTACCC 59.360 36.000 0.00 0.00 0.00 3.69
4570 6790 6.713792 ACAACAACAACAACAACAATTACC 57.286 33.333 0.00 0.00 0.00 2.85
4571 6791 7.568433 ACAACAACAACAACAACAACAATTAC 58.432 30.769 0.00 0.00 0.00 1.89
4572 6792 7.715265 ACAACAACAACAACAACAACAATTA 57.285 28.000 0.00 0.00 0.00 1.40
4573 6793 6.610741 ACAACAACAACAACAACAACAATT 57.389 29.167 0.00 0.00 0.00 2.32
4574 6794 6.037610 ACAACAACAACAACAACAACAACAAT 59.962 30.769 0.00 0.00 0.00 2.71
4575 6795 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
4576 6796 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
4577 6797 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
4578 6798 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
4579 6799 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
4580 6800 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
4581 6801 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
4582 6802 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
4583 6803 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
4584 6804 5.220662 CCAACAACAACAACAACAACAACAA 60.221 36.000 0.00 0.00 0.00 2.83
4585 6805 4.271049 CCAACAACAACAACAACAACAACA 59.729 37.500 0.00 0.00 0.00 3.33
4586 6806 4.271291 ACCAACAACAACAACAACAACAAC 59.729 37.500 0.00 0.00 0.00 3.32
4587 6807 4.442706 ACCAACAACAACAACAACAACAA 58.557 34.783 0.00 0.00 0.00 2.83
4588 6808 4.060038 ACCAACAACAACAACAACAACA 57.940 36.364 0.00 0.00 0.00 3.33
4589 6809 5.462405 TCTACCAACAACAACAACAACAAC 58.538 37.500 0.00 0.00 0.00 3.32
4590 6810 5.707242 TCTACCAACAACAACAACAACAA 57.293 34.783 0.00 0.00 0.00 2.83
4591 6811 5.906113 ATCTACCAACAACAACAACAACA 57.094 34.783 0.00 0.00 0.00 3.33
4592 6812 7.381139 CCATTATCTACCAACAACAACAACAAC 59.619 37.037 0.00 0.00 0.00 3.32
4593 6813 7.068839 ACCATTATCTACCAACAACAACAACAA 59.931 33.333 0.00 0.00 0.00 2.83
4594 6814 6.547880 ACCATTATCTACCAACAACAACAACA 59.452 34.615 0.00 0.00 0.00 3.33
4595 6815 6.977213 ACCATTATCTACCAACAACAACAAC 58.023 36.000 0.00 0.00 0.00 3.32
4596 6816 8.693120 TTACCATTATCTACCAACAACAACAA 57.307 30.769 0.00 0.00 0.00 2.83
4597 6817 8.569641 GTTTACCATTATCTACCAACAACAACA 58.430 33.333 0.00 0.00 0.00 3.33
4598 6818 8.789762 AGTTTACCATTATCTACCAACAACAAC 58.210 33.333 0.00 0.00 0.00 3.32
4599 6819 8.788806 CAGTTTACCATTATCTACCAACAACAA 58.211 33.333 0.00 0.00 0.00 2.83
4600 6820 7.094549 GCAGTTTACCATTATCTACCAACAACA 60.095 37.037 0.00 0.00 0.00 3.33
4601 6821 7.120726 AGCAGTTTACCATTATCTACCAACAAC 59.879 37.037 0.00 0.00 0.00 3.32
4602 6822 7.172342 AGCAGTTTACCATTATCTACCAACAA 58.828 34.615 0.00 0.00 0.00 2.83
4603 6823 6.717289 AGCAGTTTACCATTATCTACCAACA 58.283 36.000 0.00 0.00 0.00 3.33
4604 6824 6.260271 GGAGCAGTTTACCATTATCTACCAAC 59.740 42.308 0.00 0.00 0.00 3.77
4665 6885 3.307762 GGCTTCCATGTGAGGTCTAACTT 60.308 47.826 0.00 0.00 0.00 2.66
4689 6909 3.843619 AGGAAAGAAGGAAGAAGAGGGAG 59.156 47.826 0.00 0.00 0.00 4.30
4690 6910 3.841255 GAGGAAAGAAGGAAGAAGAGGGA 59.159 47.826 0.00 0.00 0.00 4.20
4691 6911 3.584848 TGAGGAAAGAAGGAAGAAGAGGG 59.415 47.826 0.00 0.00 0.00 4.30
4692 6912 4.899352 TGAGGAAAGAAGGAAGAAGAGG 57.101 45.455 0.00 0.00 0.00 3.69
4693 6913 6.374053 GGATTTGAGGAAAGAAGGAAGAAGAG 59.626 42.308 0.00 0.00 0.00 2.85
4694 6914 6.241645 GGATTTGAGGAAAGAAGGAAGAAGA 58.758 40.000 0.00 0.00 0.00 2.87
4695 6915 5.417266 GGGATTTGAGGAAAGAAGGAAGAAG 59.583 44.000 0.00 0.00 0.00 2.85
4696 6916 5.325239 GGGATTTGAGGAAAGAAGGAAGAA 58.675 41.667 0.00 0.00 0.00 2.52
4697 6917 4.263949 GGGGATTTGAGGAAAGAAGGAAGA 60.264 45.833 0.00 0.00 0.00 2.87
4698 6918 4.019858 GGGGATTTGAGGAAAGAAGGAAG 58.980 47.826 0.00 0.00 0.00 3.46
4699 6919 3.662642 AGGGGATTTGAGGAAAGAAGGAA 59.337 43.478 0.00 0.00 0.00 3.36
4700 6920 3.267031 GAGGGGATTTGAGGAAAGAAGGA 59.733 47.826 0.00 0.00 0.00 3.36
4701 6921 3.625853 GAGGGGATTTGAGGAAAGAAGG 58.374 50.000 0.00 0.00 0.00 3.46
4702 6922 3.268072 AGGAGGGGATTTGAGGAAAGAAG 59.732 47.826 0.00 0.00 0.00 2.85
4703 6923 3.269034 AGGAGGGGATTTGAGGAAAGAA 58.731 45.455 0.00 0.00 0.00 2.52
4704 6924 2.934722 AGGAGGGGATTTGAGGAAAGA 58.065 47.619 0.00 0.00 0.00 2.52
4705 6925 3.746792 AAGGAGGGGATTTGAGGAAAG 57.253 47.619 0.00 0.00 0.00 2.62
4706 6926 5.255207 TGATAAAGGAGGGGATTTGAGGAAA 59.745 40.000 0.00 0.00 0.00 3.13
4707 6927 4.793520 TGATAAAGGAGGGGATTTGAGGAA 59.206 41.667 0.00 0.00 0.00 3.36
4708 6928 4.166144 GTGATAAAGGAGGGGATTTGAGGA 59.834 45.833 0.00 0.00 0.00 3.71
4709 6929 4.464947 GTGATAAAGGAGGGGATTTGAGG 58.535 47.826 0.00 0.00 0.00 3.86
4710 6930 4.130118 CGTGATAAAGGAGGGGATTTGAG 58.870 47.826 0.00 0.00 0.00 3.02
4711 6931 3.778075 TCGTGATAAAGGAGGGGATTTGA 59.222 43.478 0.00 0.00 0.00 2.69
4712 6932 3.877508 GTCGTGATAAAGGAGGGGATTTG 59.122 47.826 0.00 0.00 0.00 2.32
4713 6933 3.118000 GGTCGTGATAAAGGAGGGGATTT 60.118 47.826 0.00 0.00 0.00 2.17
4714 6934 2.438392 GGTCGTGATAAAGGAGGGGATT 59.562 50.000 0.00 0.00 0.00 3.01
4715 6935 2.047830 GGTCGTGATAAAGGAGGGGAT 58.952 52.381 0.00 0.00 0.00 3.85
4716 6936 1.492764 GGTCGTGATAAAGGAGGGGA 58.507 55.000 0.00 0.00 0.00 4.81
4717 6937 0.468648 GGGTCGTGATAAAGGAGGGG 59.531 60.000 0.00 0.00 0.00 4.79
4718 6938 1.200519 TGGGTCGTGATAAAGGAGGG 58.799 55.000 0.00 0.00 0.00 4.30
4719 6939 3.467803 GAATGGGTCGTGATAAAGGAGG 58.532 50.000 0.00 0.00 0.00 4.30
4720 6940 3.467803 GGAATGGGTCGTGATAAAGGAG 58.532 50.000 0.00 0.00 0.00 3.69
4721 6941 2.171870 GGGAATGGGTCGTGATAAAGGA 59.828 50.000 0.00 0.00 0.00 3.36
4722 6942 2.092646 TGGGAATGGGTCGTGATAAAGG 60.093 50.000 0.00 0.00 0.00 3.11
4723 6943 2.943033 GTGGGAATGGGTCGTGATAAAG 59.057 50.000 0.00 0.00 0.00 1.85
4724 6944 2.678479 CGTGGGAATGGGTCGTGATAAA 60.678 50.000 0.00 0.00 0.00 1.40
4725 6945 1.134640 CGTGGGAATGGGTCGTGATAA 60.135 52.381 0.00 0.00 0.00 1.75
4726 6946 0.462375 CGTGGGAATGGGTCGTGATA 59.538 55.000 0.00 0.00 0.00 2.15
4727 6947 1.220749 CGTGGGAATGGGTCGTGAT 59.779 57.895 0.00 0.00 0.00 3.06
4728 6948 2.162338 GACGTGGGAATGGGTCGTGA 62.162 60.000 0.00 0.00 34.93 4.35
4729 6949 1.740296 GACGTGGGAATGGGTCGTG 60.740 63.158 0.00 0.00 34.93 4.35
4730 6950 2.660802 GACGTGGGAATGGGTCGT 59.339 61.111 0.00 0.00 37.45 4.34
4731 6951 2.508439 CGACGTGGGAATGGGTCG 60.508 66.667 0.00 0.00 44.92 4.79
4732 6952 2.818274 GCGACGTGGGAATGGGTC 60.818 66.667 0.00 0.00 0.00 4.46
4733 6953 3.310860 GAGCGACGTGGGAATGGGT 62.311 63.158 0.00 0.00 0.00 4.51
4734 6954 2.511600 GAGCGACGTGGGAATGGG 60.512 66.667 0.00 0.00 0.00 4.00
4735 6955 2.511600 GGAGCGACGTGGGAATGG 60.512 66.667 0.00 0.00 0.00 3.16
4736 6956 1.811266 CAGGAGCGACGTGGGAATG 60.811 63.158 0.00 0.00 0.00 2.67
4737 6957 2.283529 ACAGGAGCGACGTGGGAAT 61.284 57.895 0.00 0.00 38.51 3.01
4738 6958 2.915659 ACAGGAGCGACGTGGGAA 60.916 61.111 0.00 0.00 38.51 3.97
4739 6959 3.680786 CACAGGAGCGACGTGGGA 61.681 66.667 0.00 0.00 39.80 4.37
4740 6960 4.742201 CCACAGGAGCGACGTGGG 62.742 72.222 0.00 5.98 45.32 4.61
4766 6986 4.832608 CACGGGCTAGGGTTCCGC 62.833 72.222 0.00 0.00 46.87 5.54
4768 6988 4.484872 GCCACGGGCTAGGGTTCC 62.485 72.222 7.58 0.00 46.69 3.62
4778 6998 2.192175 GGGATTAGTGGCCACGGG 59.808 66.667 29.68 0.00 36.20 5.28
4779 6999 1.146263 GAGGGATTAGTGGCCACGG 59.854 63.158 29.68 0.00 36.20 4.94
4780 7000 1.146263 GGAGGGATTAGTGGCCACG 59.854 63.158 29.68 0.00 36.20 4.94
4781 7001 0.846693 ATGGAGGGATTAGTGGCCAC 59.153 55.000 29.22 29.22 0.00 5.01
4782 7002 0.846015 CATGGAGGGATTAGTGGCCA 59.154 55.000 0.00 0.00 0.00 5.36
4783 7003 0.846693 ACATGGAGGGATTAGTGGCC 59.153 55.000 0.00 0.00 0.00 5.36
4784 7004 1.972872 CACATGGAGGGATTAGTGGC 58.027 55.000 0.00 0.00 0.00 5.01
4785 7005 1.477558 GGCACATGGAGGGATTAGTGG 60.478 57.143 0.00 0.00 0.00 4.00
4786 7006 1.492176 AGGCACATGGAGGGATTAGTG 59.508 52.381 0.00 0.00 0.00 2.74
4787 7007 1.771255 GAGGCACATGGAGGGATTAGT 59.229 52.381 0.00 0.00 0.00 2.24
4788 7008 1.072965 GGAGGCACATGGAGGGATTAG 59.927 57.143 0.00 0.00 0.00 1.73
4789 7009 1.140312 GGAGGCACATGGAGGGATTA 58.860 55.000 0.00 0.00 0.00 1.75
4790 7010 0.625683 AGGAGGCACATGGAGGGATT 60.626 55.000 0.00 0.00 0.00 3.01
4791 7011 1.005289 AGGAGGCACATGGAGGGAT 59.995 57.895 0.00 0.00 0.00 3.85
4792 7012 1.690633 GAGGAGGCACATGGAGGGA 60.691 63.158 0.00 0.00 0.00 4.20
4793 7013 1.692042 AGAGGAGGCACATGGAGGG 60.692 63.158 0.00 0.00 0.00 4.30
4794 7014 1.694133 GGAGAGGAGGCACATGGAGG 61.694 65.000 0.00 0.00 0.00 4.30
4795 7015 1.694133 GGGAGAGGAGGCACATGGAG 61.694 65.000 0.00 0.00 0.00 3.86
4796 7016 1.690633 GGGAGAGGAGGCACATGGA 60.691 63.158 0.00 0.00 0.00 3.41
4797 7017 1.277580 AAGGGAGAGGAGGCACATGG 61.278 60.000 0.00 0.00 0.00 3.66
4798 7018 0.107312 CAAGGGAGAGGAGGCACATG 60.107 60.000 0.00 0.00 0.00 3.21
4799 7019 1.919600 GCAAGGGAGAGGAGGCACAT 61.920 60.000 0.00 0.00 0.00 3.21
4800 7020 2.596851 GCAAGGGAGAGGAGGCACA 61.597 63.158 0.00 0.00 0.00 4.57
4801 7021 2.270527 GCAAGGGAGAGGAGGCAC 59.729 66.667 0.00 0.00 0.00 5.01
4802 7022 3.011517 GGCAAGGGAGAGGAGGCA 61.012 66.667 0.00 0.00 0.00 4.75
4803 7023 4.168291 CGGCAAGGGAGAGGAGGC 62.168 72.222 0.00 0.00 0.00 4.70
4804 7024 2.685380 ACGGCAAGGGAGAGGAGG 60.685 66.667 0.00 0.00 0.00 4.30
4805 7025 2.896443 GACGGCAAGGGAGAGGAG 59.104 66.667 0.00 0.00 0.00 3.69
4806 7026 3.068691 CGACGGCAAGGGAGAGGA 61.069 66.667 0.00 0.00 0.00 3.71
4807 7027 4.821589 GCGACGGCAAGGGAGAGG 62.822 72.222 0.00 0.00 39.62 3.69
4808 7028 2.343163 CTAGCGACGGCAAGGGAGAG 62.343 65.000 0.00 0.00 43.41 3.20
4809 7029 2.361992 TAGCGACGGCAAGGGAGA 60.362 61.111 0.00 0.00 43.41 3.71
4810 7030 2.105128 CTAGCGACGGCAAGGGAG 59.895 66.667 0.00 0.00 43.41 4.30
4811 7031 2.361992 TCTAGCGACGGCAAGGGA 60.362 61.111 0.00 0.00 43.41 4.20
4812 7032 2.105128 CTCTAGCGACGGCAAGGG 59.895 66.667 0.00 0.00 43.41 3.95
4813 7033 1.739338 ATCCTCTAGCGACGGCAAGG 61.739 60.000 0.00 0.00 43.41 3.61
4814 7034 0.596083 CATCCTCTAGCGACGGCAAG 60.596 60.000 0.00 0.00 43.41 4.01
4815 7035 1.320344 ACATCCTCTAGCGACGGCAA 61.320 55.000 0.00 0.00 43.41 4.52
4816 7036 1.725557 GACATCCTCTAGCGACGGCA 61.726 60.000 0.00 0.00 43.41 5.69
4817 7037 1.008309 GACATCCTCTAGCGACGGC 60.008 63.158 0.00 0.00 40.37 5.68
4818 7038 1.280142 CGACATCCTCTAGCGACGG 59.720 63.158 0.00 0.00 0.00 4.79
4819 7039 1.280142 CCGACATCCTCTAGCGACG 59.720 63.158 0.00 0.00 0.00 5.12
4820 7040 0.029567 CACCGACATCCTCTAGCGAC 59.970 60.000 0.00 0.00 0.00 5.19
4821 7041 1.101635 CCACCGACATCCTCTAGCGA 61.102 60.000 0.00 0.00 0.00 4.93
4822 7042 1.360551 CCACCGACATCCTCTAGCG 59.639 63.158 0.00 0.00 0.00 4.26
4823 7043 1.742768 CCCACCGACATCCTCTAGC 59.257 63.158 0.00 0.00 0.00 3.42
4824 7044 0.757188 AGCCCACCGACATCCTCTAG 60.757 60.000 0.00 0.00 0.00 2.43
4825 7045 0.554305 TAGCCCACCGACATCCTCTA 59.446 55.000 0.00 0.00 0.00 2.43
4826 7046 0.325296 TTAGCCCACCGACATCCTCT 60.325 55.000 0.00 0.00 0.00 3.69
4827 7047 0.105039 CTTAGCCCACCGACATCCTC 59.895 60.000 0.00 0.00 0.00 3.71
4828 7048 0.325296 TCTTAGCCCACCGACATCCT 60.325 55.000 0.00 0.00 0.00 3.24
4829 7049 0.179081 GTCTTAGCCCACCGACATCC 60.179 60.000 0.00 0.00 0.00 3.51
4830 7050 0.179081 GGTCTTAGCCCACCGACATC 60.179 60.000 0.00 0.00 0.00 3.06
4831 7051 0.617820 AGGTCTTAGCCCACCGACAT 60.618 55.000 0.00 0.00 37.79 3.06
4832 7052 1.229082 AGGTCTTAGCCCACCGACA 60.229 57.895 0.00 0.00 37.79 4.35
4833 7053 0.971447 AGAGGTCTTAGCCCACCGAC 60.971 60.000 0.00 0.00 37.79 4.79
4834 7054 0.683504 GAGAGGTCTTAGCCCACCGA 60.684 60.000 0.00 0.00 37.79 4.69
4835 7055 1.817209 GAGAGGTCTTAGCCCACCG 59.183 63.158 0.00 0.00 37.79 4.94
4836 7056 1.817209 CGAGAGGTCTTAGCCCACC 59.183 63.158 0.00 0.00 0.00 4.61
4867 7087 3.483869 ATGAGGAAGCTCCCCGCC 61.484 66.667 6.43 1.54 37.19 6.13
4868 7088 2.203126 CATGAGGAAGCTCCCCGC 60.203 66.667 0.00 0.00 37.19 6.13
4869 7089 2.203126 GCATGAGGAAGCTCCCCG 60.203 66.667 0.00 0.00 37.19 5.73
4870 7090 1.452833 GTGCATGAGGAAGCTCCCC 60.453 63.158 0.00 0.00 37.19 4.81
4871 7091 0.106819 ATGTGCATGAGGAAGCTCCC 60.107 55.000 0.00 0.00 37.19 4.30
4872 7092 1.022735 CATGTGCATGAGGAAGCTCC 58.977 55.000 6.32 0.00 41.20 4.70
4873 7093 1.669779 GACATGTGCATGAGGAAGCTC 59.330 52.381 17.85 0.91 41.20 4.09
4874 7094 1.281287 AGACATGTGCATGAGGAAGCT 59.719 47.619 17.85 3.79 41.20 3.74
4875 7095 1.400846 CAGACATGTGCATGAGGAAGC 59.599 52.381 17.85 0.00 41.20 3.86
4876 7096 2.708051 ACAGACATGTGCATGAGGAAG 58.292 47.619 17.85 6.33 41.20 3.46
4877 7097 2.865119 ACAGACATGTGCATGAGGAA 57.135 45.000 17.85 0.00 41.20 3.36
4878 7098 2.616256 GGAACAGACATGTGCATGAGGA 60.616 50.000 17.85 0.00 40.39 3.71
4879 7099 1.741706 GGAACAGACATGTGCATGAGG 59.258 52.381 17.85 9.26 40.39 3.86
4880 7100 1.741706 GGGAACAGACATGTGCATGAG 59.258 52.381 17.85 9.85 40.39 2.90
4881 7101 1.352017 AGGGAACAGACATGTGCATGA 59.648 47.619 17.85 0.00 40.39 3.07
4882 7102 1.830279 AGGGAACAGACATGTGCATG 58.170 50.000 1.15 10.31 40.39 4.06
4883 7103 2.165167 CAAGGGAACAGACATGTGCAT 58.835 47.619 1.15 0.00 40.39 3.96
4884 7104 1.608055 CAAGGGAACAGACATGTGCA 58.392 50.000 1.15 0.00 40.39 4.57
4885 7105 0.883833 CCAAGGGAACAGACATGTGC 59.116 55.000 1.15 0.00 40.39 4.57
4886 7106 2.154462 GACCAAGGGAACAGACATGTG 58.846 52.381 1.15 0.00 40.39 3.21
4887 7107 1.270839 CGACCAAGGGAACAGACATGT 60.271 52.381 0.00 0.00 43.15 3.21
4888 7108 1.442769 CGACCAAGGGAACAGACATG 58.557 55.000 0.00 0.00 0.00 3.21
4889 7109 0.324943 CCGACCAAGGGAACAGACAT 59.675 55.000 0.00 0.00 0.00 3.06
4890 7110 1.752198 CCGACCAAGGGAACAGACA 59.248 57.895 0.00 0.00 0.00 3.41
4891 7111 4.695560 CCGACCAAGGGAACAGAC 57.304 61.111 0.00 0.00 0.00 3.51
4914 7134 0.323629 TGAGCAACGTTTAGAGGGGG 59.676 55.000 0.00 0.00 0.00 5.40
4915 7135 2.403252 ATGAGCAACGTTTAGAGGGG 57.597 50.000 0.00 0.00 0.00 4.79
4916 7136 4.747108 CAGATATGAGCAACGTTTAGAGGG 59.253 45.833 0.00 0.00 0.00 4.30
4917 7137 4.747108 CCAGATATGAGCAACGTTTAGAGG 59.253 45.833 0.00 0.00 0.00 3.69
4918 7138 4.210120 GCCAGATATGAGCAACGTTTAGAG 59.790 45.833 0.00 0.00 0.00 2.43
4919 7139 4.119862 GCCAGATATGAGCAACGTTTAGA 58.880 43.478 0.00 0.00 0.00 2.10
4920 7140 3.060272 CGCCAGATATGAGCAACGTTTAG 60.060 47.826 0.00 0.00 0.00 1.85
4921 7141 2.863740 CGCCAGATATGAGCAACGTTTA 59.136 45.455 0.00 0.00 0.00 2.01
4922 7142 1.665679 CGCCAGATATGAGCAACGTTT 59.334 47.619 0.00 0.00 0.00 3.60
4923 7143 1.134818 TCGCCAGATATGAGCAACGTT 60.135 47.619 0.00 0.00 0.00 3.99
4924 7144 0.459899 TCGCCAGATATGAGCAACGT 59.540 50.000 0.00 0.00 0.00 3.99
4925 7145 0.855349 GTCGCCAGATATGAGCAACG 59.145 55.000 0.00 0.00 0.00 4.10
4926 7146 1.221414 GGTCGCCAGATATGAGCAAC 58.779 55.000 0.00 0.00 0.00 4.17
4927 7147 0.249447 CGGTCGCCAGATATGAGCAA 60.249 55.000 0.00 0.00 0.00 3.91
4928 7148 1.106944 TCGGTCGCCAGATATGAGCA 61.107 55.000 0.00 0.00 0.00 4.26
4929 7149 0.664767 GTCGGTCGCCAGATATGAGC 60.665 60.000 0.00 0.00 0.00 4.26
4930 7150 0.668535 TGTCGGTCGCCAGATATGAG 59.331 55.000 0.00 0.00 0.00 2.90
4931 7151 1.107945 TTGTCGGTCGCCAGATATGA 58.892 50.000 0.00 0.00 0.00 2.15
4932 7152 1.202417 AGTTGTCGGTCGCCAGATATG 60.202 52.381 0.00 0.00 0.00 1.78
4933 7153 1.112113 AGTTGTCGGTCGCCAGATAT 58.888 50.000 0.00 0.00 0.00 1.63
4934 7154 0.892755 AAGTTGTCGGTCGCCAGATA 59.107 50.000 0.00 0.00 0.00 1.98
4935 7155 0.389948 GAAGTTGTCGGTCGCCAGAT 60.390 55.000 0.00 0.00 0.00 2.90
4936 7156 1.006571 GAAGTTGTCGGTCGCCAGA 60.007 57.895 0.00 0.00 0.00 3.86
4937 7157 1.006102 AGAAGTTGTCGGTCGCCAG 60.006 57.895 0.00 0.00 0.00 4.85
4938 7158 1.006571 GAGAAGTTGTCGGTCGCCA 60.007 57.895 0.00 0.00 0.00 5.69
4939 7159 0.733223 GAGAGAAGTTGTCGGTCGCC 60.733 60.000 0.00 0.00 0.00 5.54
4940 7160 1.066114 CGAGAGAAGTTGTCGGTCGC 61.066 60.000 0.00 0.00 38.79 5.19
4941 7161 0.516001 TCGAGAGAAGTTGTCGGTCG 59.484 55.000 5.59 5.59 42.40 4.79
4942 7162 1.805345 TCTCGAGAGAAGTTGTCGGTC 59.195 52.381 12.08 0.00 42.40 4.79
4943 7163 1.807742 CTCTCGAGAGAAGTTGTCGGT 59.192 52.381 34.30 0.00 44.74 4.69
4944 7164 1.131504 CCTCTCGAGAGAAGTTGTCGG 59.868 57.143 38.04 18.82 44.74 4.79
4945 7165 1.807742 ACCTCTCGAGAGAAGTTGTCG 59.192 52.381 38.04 22.76 44.74 4.35
4946 7166 2.162809 GGACCTCTCGAGAGAAGTTGTC 59.837 54.545 38.04 31.82 44.74 3.18
4947 7167 2.164338 GGACCTCTCGAGAGAAGTTGT 58.836 52.381 38.04 27.44 44.74 3.32
4948 7168 1.131504 CGGACCTCTCGAGAGAAGTTG 59.868 57.143 38.04 24.71 44.74 3.16
4949 7169 1.455248 CGGACCTCTCGAGAGAAGTT 58.545 55.000 38.04 21.34 44.74 2.66
4950 7170 0.393267 CCGGACCTCTCGAGAGAAGT 60.393 60.000 38.04 28.77 44.74 3.01
4951 7171 1.720694 GCCGGACCTCTCGAGAGAAG 61.721 65.000 38.04 26.02 44.74 2.85
4952 7172 1.749638 GCCGGACCTCTCGAGAGAA 60.750 63.158 38.04 8.11 44.74 2.87
4953 7173 2.124653 GCCGGACCTCTCGAGAGA 60.125 66.667 38.04 9.17 44.74 3.10
4954 7174 3.578272 CGCCGGACCTCTCGAGAG 61.578 72.222 31.55 31.55 41.71 3.20
4955 7175 4.091939 TCGCCGGACCTCTCGAGA 62.092 66.667 15.70 15.70 0.00 4.04
4956 7176 3.878519 GTCGCCGGACCTCTCGAG 61.879 72.222 5.05 5.93 37.19 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.