Multiple sequence alignment - TraesCS1A01G119600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G119600 chr1A 100.000 3242 0 0 1 3242 131522683 131519442 0.000000e+00 5987.0
1 TraesCS1A01G119600 chr1A 92.537 268 16 3 2857 3122 448115738 448115473 6.560000e-102 381.0
2 TraesCS1A01G119600 chr1A 94.495 109 6 0 1 109 12099234 12099126 5.560000e-38 169.0
3 TraesCS1A01G119600 chr1A 90.598 117 10 1 1 117 435066041 435066156 1.560000e-33 154.0
4 TraesCS1A01G119600 chr1D 96.659 2275 50 11 604 2858 119011299 119009031 0.000000e+00 3757.0
5 TraesCS1A01G119600 chr1D 91.429 210 14 3 107 314 119011621 119011414 5.290000e-73 285.0
6 TraesCS1A01G119600 chr1D 98.450 129 2 0 3114 3242 119009032 119008904 9.050000e-56 228.0
7 TraesCS1A01G119600 chr1B 96.173 2247 50 14 631 2858 181218732 181216503 0.000000e+00 3640.0
8 TraesCS1A01G119600 chr1B 95.276 127 4 1 3114 3240 181216504 181216380 1.970000e-47 200.0
9 TraesCS1A01G119600 chr3D 83.397 1048 151 19 1110 2144 75355776 75356813 0.000000e+00 950.0
10 TraesCS1A01G119600 chr3D 78.596 869 164 21 1142 1999 291765501 291766358 3.650000e-154 555.0
11 TraesCS1A01G119600 chr3D 92.701 274 15 5 2845 3115 107043525 107043796 1.090000e-104 390.0
12 TraesCS1A01G119600 chr3D 93.487 261 15 2 2857 3115 83428536 83428796 1.410000e-103 387.0
13 TraesCS1A01G119600 chr3D 88.889 99 10 1 319 416 112703555 112703457 1.580000e-23 121.0
14 TraesCS1A01G119600 chr3D 86.957 69 8 1 549 617 41065238 41065171 3.470000e-10 76.8
15 TraesCS1A01G119600 chr3B 82.723 1065 168 15 1089 2144 121575918 121576975 0.000000e+00 933.0
16 TraesCS1A01G119600 chr3B 77.137 936 187 23 1142 2065 384909908 384910828 4.790000e-143 518.0
17 TraesCS1A01G119600 chr3A 82.609 1058 157 22 1108 2149 88854729 88855775 0.000000e+00 909.0
18 TraesCS1A01G119600 chr3A 77.516 934 187 20 1142 2065 384319979 384320899 1.020000e-149 540.0
19 TraesCS1A01G119600 chr3A 87.692 65 8 0 550 614 12251969 12251905 3.470000e-10 76.8
20 TraesCS1A01G119600 chr6D 78.386 1004 174 37 1135 2119 60168256 60167277 2.140000e-171 612.0
21 TraesCS1A01G119600 chr6D 92.565 269 15 5 2857 3123 160794029 160793764 6.560000e-102 381.0
22 TraesCS1A01G119600 chr6D 92.793 111 8 0 1 111 428405946 428405836 9.310000e-36 161.0
23 TraesCS1A01G119600 chr5B 93.822 259 16 0 2857 3115 529528291 529528033 1.090000e-104 390.0
24 TraesCS1A01G119600 chr5B 93.578 109 7 0 1 109 431062016 431062124 2.590000e-36 163.0
25 TraesCS1A01G119600 chr5B 87.755 98 9 3 321 416 431778261 431778165 9.510000e-21 111.0
26 TraesCS1A01G119600 chr7A 92.910 268 16 3 2857 3122 544739595 544739861 1.410000e-103 387.0
27 TraesCS1A01G119600 chr7A 88.785 107 11 1 318 423 93083451 93083345 2.620000e-26 130.0
28 TraesCS1A01G119600 chr7A 91.803 61 5 0 553 613 222669578 222669638 5.760000e-13 86.1
29 TraesCS1A01G119600 chr7A 85.366 82 9 3 531 609 10414078 10413997 7.450000e-12 82.4
30 TraesCS1A01G119600 chr6A 93.487 261 15 2 2857 3115 76520938 76520678 1.410000e-103 387.0
31 TraesCS1A01G119600 chr7D 92.884 267 16 3 2857 3121 445784703 445784968 5.070000e-103 385.0
32 TraesCS1A01G119600 chr7D 88.333 60 7 0 553 612 277549075 277549134 4.490000e-09 73.1
33 TraesCS1A01G119600 chr2A 93.156 263 16 2 2857 3118 128506858 128506597 5.070000e-103 385.0
34 TraesCS1A01G119600 chr2A 93.578 109 7 0 1 109 158594123 158594015 2.590000e-36 163.0
35 TraesCS1A01G119600 chr2A 93.519 108 7 0 1 108 123906448 123906555 9.310000e-36 161.0
36 TraesCS1A01G119600 chr2A 87.302 63 8 0 552 614 498848779 498848841 4.490000e-09 73.1
37 TraesCS1A01G119600 chr5A 77.581 339 59 16 1152 1481 619098999 619098669 4.270000e-44 189.0
38 TraesCS1A01G119600 chr5D 93.578 109 7 0 1 109 136939868 136939976 2.590000e-36 163.0
39 TraesCS1A01G119600 chr7B 93.519 108 7 0 1 108 680907458 680907565 9.310000e-36 161.0
40 TraesCS1A01G119600 chr7B 87.097 62 8 0 551 612 33069508 33069569 1.610000e-08 71.3
41 TraesCS1A01G119600 chr2B 93.519 108 7 0 1 108 772709643 772709750 9.310000e-36 161.0
42 TraesCS1A01G119600 chr2B 88.182 110 11 2 315 423 31743431 31743323 2.620000e-26 130.0
43 TraesCS1A01G119600 chr2D 92.188 64 5 0 551 614 635260107 635260044 1.240000e-14 91.6
44 TraesCS1A01G119600 chr2D 90.323 62 5 1 551 612 531234850 531234790 2.680000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G119600 chr1A 131519442 131522683 3241 True 5987.000000 5987 100.000000 1 3242 1 chr1A.!!$R2 3241
1 TraesCS1A01G119600 chr1D 119008904 119011621 2717 True 1423.333333 3757 95.512667 107 3242 3 chr1D.!!$R1 3135
2 TraesCS1A01G119600 chr1B 181216380 181218732 2352 True 1920.000000 3640 95.724500 631 3240 2 chr1B.!!$R1 2609
3 TraesCS1A01G119600 chr3D 75355776 75356813 1037 False 950.000000 950 83.397000 1110 2144 1 chr3D.!!$F1 1034
4 TraesCS1A01G119600 chr3D 291765501 291766358 857 False 555.000000 555 78.596000 1142 1999 1 chr3D.!!$F4 857
5 TraesCS1A01G119600 chr3B 121575918 121576975 1057 False 933.000000 933 82.723000 1089 2144 1 chr3B.!!$F1 1055
6 TraesCS1A01G119600 chr3B 384909908 384910828 920 False 518.000000 518 77.137000 1142 2065 1 chr3B.!!$F2 923
7 TraesCS1A01G119600 chr3A 88854729 88855775 1046 False 909.000000 909 82.609000 1108 2149 1 chr3A.!!$F1 1041
8 TraesCS1A01G119600 chr3A 384319979 384320899 920 False 540.000000 540 77.516000 1142 2065 1 chr3A.!!$F2 923
9 TraesCS1A01G119600 chr6D 60167277 60168256 979 True 612.000000 612 78.386000 1135 2119 1 chr6D.!!$R1 984

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
379 382 0.033796 CCTCAGGCCCACACATCAAT 60.034 55.0 0.0 0.0 0.0 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2266 2292 0.313987 CGGCAAGGGAAAGTGAAACC 59.686 55.0 0.0 0.0 37.8 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 96 9.546428 AGACAAATTTAAGACAAGAATTTTGGG 57.454 29.630 0.00 0.00 33.39 4.12
96 97 9.541143 GACAAATTTAAGACAAGAATTTTGGGA 57.459 29.630 0.00 0.00 33.39 4.37
97 98 9.325198 ACAAATTTAAGACAAGAATTTTGGGAC 57.675 29.630 0.00 0.00 33.39 4.46
98 99 8.487176 CAAATTTAAGACAAGAATTTTGGGACG 58.513 33.333 0.00 0.00 32.35 4.79
99 100 5.699097 TTAAGACAAGAATTTTGGGACGG 57.301 39.130 0.00 0.00 0.00 4.79
100 101 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
101 102 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
102 103 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
103 104 2.107552 ACAAGAATTTTGGGACGGAGGA 59.892 45.455 0.00 0.00 0.00 3.71
104 105 3.153919 CAAGAATTTTGGGACGGAGGAA 58.846 45.455 0.00 0.00 0.00 3.36
105 106 3.073274 AGAATTTTGGGACGGAGGAAG 57.927 47.619 0.00 0.00 0.00 3.46
142 143 9.725019 TGTCTTATGATATATGTTGGACATTCC 57.275 33.333 0.00 0.00 39.88 3.01
175 176 7.872113 ATCCTTTTCTCCATAACTTGATCAC 57.128 36.000 0.00 0.00 0.00 3.06
263 266 7.383156 AATTTTGATATGAAATGCCAGGGAT 57.617 32.000 0.00 0.00 0.00 3.85
267 270 5.319453 TGATATGAAATGCCAGGGATCTTC 58.681 41.667 0.00 1.81 0.00 2.87
268 271 2.442236 TGAAATGCCAGGGATCTTCC 57.558 50.000 0.00 0.00 35.23 3.46
288 291 6.612456 TCTTCCGATCCTTACCCTTATTACAA 59.388 38.462 0.00 0.00 0.00 2.41
291 294 5.306160 CCGATCCTTACCCTTATTACAAGGA 59.694 44.000 4.59 3.99 46.49 3.36
294 297 7.771826 CGATCCTTACCCTTATTACAAGGAAAA 59.228 37.037 5.53 0.00 45.79 2.29
295 298 9.642343 GATCCTTACCCTTATTACAAGGAAAAT 57.358 33.333 5.53 0.00 45.79 1.82
320 323 7.707624 AAAATATTGAATTGCTCTGTGAGGA 57.292 32.000 0.00 0.00 0.00 3.71
321 324 6.690194 AATATTGAATTGCTCTGTGAGGAC 57.310 37.500 0.00 0.00 27.75 3.85
322 325 2.084610 TGAATTGCTCTGTGAGGACG 57.915 50.000 0.00 0.00 27.75 4.79
323 326 0.723981 GAATTGCTCTGTGAGGACGC 59.276 55.000 0.00 0.00 27.75 5.19
324 327 1.016130 AATTGCTCTGTGAGGACGCG 61.016 55.000 3.53 3.53 27.75 6.01
325 328 1.877576 ATTGCTCTGTGAGGACGCGA 61.878 55.000 15.93 0.00 27.75 5.87
326 329 2.505118 GCTCTGTGAGGACGCGAC 60.505 66.667 15.93 6.56 0.00 5.19
327 330 2.983930 GCTCTGTGAGGACGCGACT 61.984 63.158 15.93 11.01 0.00 4.18
328 331 1.135731 CTCTGTGAGGACGCGACTC 59.864 63.158 15.93 20.19 35.55 3.36
329 332 2.179517 CTGTGAGGACGCGACTCC 59.820 66.667 24.70 17.79 34.06 3.85
330 333 3.343788 CTGTGAGGACGCGACTCCC 62.344 68.421 24.70 17.69 34.06 4.30
331 334 3.063084 GTGAGGACGCGACTCCCT 61.063 66.667 24.70 18.90 34.06 4.20
332 335 1.748122 GTGAGGACGCGACTCCCTA 60.748 63.158 24.70 8.70 34.06 3.53
333 336 1.001764 TGAGGACGCGACTCCCTAA 60.002 57.895 24.70 12.03 34.06 2.69
334 337 1.310933 TGAGGACGCGACTCCCTAAC 61.311 60.000 24.70 11.06 34.06 2.34
335 338 2.101770 GGACGCGACTCCCTAACG 59.898 66.667 15.93 0.00 0.00 3.18
336 339 2.694760 GGACGCGACTCCCTAACGT 61.695 63.158 15.93 0.00 40.11 3.99
337 340 1.211190 GACGCGACTCCCTAACGTT 59.789 57.895 15.93 5.88 37.05 3.99
338 341 0.796113 GACGCGACTCCCTAACGTTC 60.796 60.000 15.93 0.00 37.05 3.95
339 342 1.515736 CGCGACTCCCTAACGTTCC 60.516 63.158 2.82 0.00 0.00 3.62
340 343 1.515736 GCGACTCCCTAACGTTCCG 60.516 63.158 2.82 0.00 0.00 4.30
341 344 1.878775 CGACTCCCTAACGTTCCGT 59.121 57.895 2.82 0.00 43.97 4.69
350 353 2.188469 ACGTTCCGTTGGCACACT 59.812 55.556 0.00 0.00 39.29 3.55
351 354 2.177580 ACGTTCCGTTGGCACACTG 61.178 57.895 0.00 0.00 39.29 3.66
352 355 1.885388 CGTTCCGTTGGCACACTGA 60.885 57.895 0.00 0.00 39.29 3.41
353 356 1.647084 GTTCCGTTGGCACACTGAC 59.353 57.895 0.00 0.00 39.29 3.51
354 357 1.092921 GTTCCGTTGGCACACTGACA 61.093 55.000 0.00 0.00 39.29 3.58
355 358 0.813610 TTCCGTTGGCACACTGACAG 60.814 55.000 0.00 0.00 36.33 3.51
356 359 2.253758 CCGTTGGCACACTGACAGG 61.254 63.158 7.51 0.00 36.33 4.00
357 360 1.523711 CGTTGGCACACTGACAGGT 60.524 57.895 7.51 0.00 36.33 4.00
358 361 1.775039 CGTTGGCACACTGACAGGTG 61.775 60.000 15.70 15.70 36.33 4.00
359 362 1.152984 TTGGCACACTGACAGGTGG 60.153 57.895 19.37 7.56 36.33 4.61
361 364 2.980233 GCACACTGACAGGTGGCC 60.980 66.667 19.37 0.00 41.09 5.36
362 365 2.831770 CACACTGACAGGTGGCCT 59.168 61.111 3.32 0.00 41.09 5.19
363 366 1.302033 CACACTGACAGGTGGCCTC 60.302 63.158 3.32 0.00 41.09 4.70
364 367 1.766059 ACACTGACAGGTGGCCTCA 60.766 57.895 3.32 0.00 41.09 3.86
365 368 1.004080 CACTGACAGGTGGCCTCAG 60.004 63.158 15.49 15.49 33.39 3.35
366 369 2.219875 ACTGACAGGTGGCCTCAGG 61.220 63.158 19.80 8.32 32.00 3.86
376 379 2.439156 GCCTCAGGCCCACACATC 60.439 66.667 3.37 0.00 44.06 3.06
377 380 3.080641 CCTCAGGCCCACACATCA 58.919 61.111 0.00 0.00 0.00 3.07
378 381 1.379916 CCTCAGGCCCACACATCAA 59.620 57.895 0.00 0.00 0.00 2.57
379 382 0.033796 CCTCAGGCCCACACATCAAT 60.034 55.000 0.00 0.00 0.00 2.57
380 383 1.100510 CTCAGGCCCACACATCAATG 58.899 55.000 0.00 0.00 0.00 2.82
381 384 0.323633 TCAGGCCCACACATCAATGG 60.324 55.000 0.00 0.00 35.59 3.16
382 385 1.683365 AGGCCCACACATCAATGGC 60.683 57.895 0.00 0.00 41.42 4.40
383 386 2.894919 GCCCACACATCAATGGCC 59.105 61.111 0.00 0.00 36.07 5.36
384 387 2.724273 GCCCACACATCAATGGCCC 61.724 63.158 0.00 0.00 36.07 5.80
385 388 2.059786 CCCACACATCAATGGCCCC 61.060 63.158 0.00 0.00 34.37 5.80
386 389 1.305129 CCACACATCAATGGCCCCA 60.305 57.895 0.00 0.00 0.00 4.96
387 390 0.688418 CCACACATCAATGGCCCCAT 60.688 55.000 0.00 0.00 38.46 4.00
388 391 0.462375 CACACATCAATGGCCCCATG 59.538 55.000 0.00 0.00 36.68 3.66
389 392 0.041535 ACACATCAATGGCCCCATGT 59.958 50.000 0.00 0.00 36.68 3.21
390 393 0.748450 CACATCAATGGCCCCATGTC 59.252 55.000 0.00 0.00 36.68 3.06
391 394 0.335705 ACATCAATGGCCCCATGTCA 59.664 50.000 0.00 0.00 36.68 3.58
392 395 1.037493 CATCAATGGCCCCATGTCAG 58.963 55.000 0.00 0.00 36.68 3.51
393 396 0.105862 ATCAATGGCCCCATGTCAGG 60.106 55.000 0.00 0.00 36.68 3.86
400 403 2.044650 CCCATGTCAGGGGTGCAG 60.045 66.667 14.78 0.00 45.60 4.41
401 404 2.759114 CCATGTCAGGGGTGCAGT 59.241 61.111 0.00 0.00 0.00 4.40
402 405 1.561769 CCCATGTCAGGGGTGCAGTA 61.562 60.000 14.78 0.00 45.60 2.74
403 406 0.392998 CCATGTCAGGGGTGCAGTAC 60.393 60.000 0.00 0.00 0.00 2.73
404 407 0.740868 CATGTCAGGGGTGCAGTACG 60.741 60.000 0.00 0.00 0.00 3.67
405 408 1.192146 ATGTCAGGGGTGCAGTACGT 61.192 55.000 0.00 0.00 0.00 3.57
406 409 1.080025 GTCAGGGGTGCAGTACGTC 60.080 63.158 0.00 0.00 0.00 4.34
407 410 1.532078 TCAGGGGTGCAGTACGTCA 60.532 57.895 0.00 0.00 0.00 4.35
408 411 1.079819 CAGGGGTGCAGTACGTCAG 60.080 63.158 0.00 0.00 0.00 3.51
409 412 1.228769 AGGGGTGCAGTACGTCAGA 60.229 57.895 0.00 0.00 0.00 3.27
410 413 1.080025 GGGGTGCAGTACGTCAGAC 60.080 63.158 0.00 0.00 0.00 3.51
412 415 1.577922 GGTGCAGTACGTCAGACGA 59.422 57.895 29.53 10.29 46.05 4.20
413 416 0.170561 GGTGCAGTACGTCAGACGAT 59.829 55.000 29.53 15.41 46.05 3.73
414 417 1.536149 GTGCAGTACGTCAGACGATC 58.464 55.000 29.53 19.33 46.05 3.69
415 418 0.450583 TGCAGTACGTCAGACGATCC 59.549 55.000 29.53 15.17 46.05 3.36
416 419 0.733729 GCAGTACGTCAGACGATCCT 59.266 55.000 29.53 17.06 46.05 3.24
417 420 1.532090 GCAGTACGTCAGACGATCCTG 60.532 57.143 29.53 26.19 46.05 3.86
418 421 2.007608 CAGTACGTCAGACGATCCTGA 58.992 52.381 29.53 4.38 46.05 3.86
419 422 2.614520 CAGTACGTCAGACGATCCTGAT 59.385 50.000 29.53 7.58 46.05 2.90
420 423 2.873472 AGTACGTCAGACGATCCTGATC 59.127 50.000 29.53 9.44 46.05 2.92
421 424 1.025812 ACGTCAGACGATCCTGATCC 58.974 55.000 29.53 0.00 46.05 3.36
422 425 0.040870 CGTCAGACGATCCTGATCCG 60.041 60.000 18.63 2.39 46.05 4.18
423 426 0.318275 GTCAGACGATCCTGATCCGC 60.318 60.000 5.16 0.00 44.09 5.54
424 427 0.466372 TCAGACGATCCTGATCCGCT 60.466 55.000 1.69 0.00 38.18 5.52
425 428 0.039617 CAGACGATCCTGATCCGCTC 60.040 60.000 1.69 0.00 36.29 5.03
426 429 0.179004 AGACGATCCTGATCCGCTCT 60.179 55.000 1.69 0.00 34.40 4.09
427 430 0.039617 GACGATCCTGATCCGCTCTG 60.040 60.000 1.69 0.00 34.40 3.35
428 431 0.753479 ACGATCCTGATCCGCTCTGT 60.753 55.000 1.69 0.00 34.40 3.41
429 432 0.318529 CGATCCTGATCCGCTCTGTG 60.319 60.000 1.69 0.00 34.40 3.66
430 433 1.035923 GATCCTGATCCGCTCTGTGA 58.964 55.000 0.00 0.00 31.76 3.58
431 434 1.617850 GATCCTGATCCGCTCTGTGAT 59.382 52.381 0.00 0.00 31.76 3.06
432 435 0.749049 TCCTGATCCGCTCTGTGATG 59.251 55.000 0.00 0.00 0.00 3.07
437 440 1.620739 ATCCGCTCTGTGATGCCTGT 61.621 55.000 0.00 0.00 0.00 4.00
454 457 3.184986 GCCTGTTGCATGCTTTACAAAAG 59.815 43.478 20.33 8.50 40.77 2.27
456 459 5.049167 CCTGTTGCATGCTTTACAAAAGAA 58.951 37.500 20.33 0.00 31.47 2.52
458 461 6.203338 CCTGTTGCATGCTTTACAAAAGAAAT 59.797 34.615 20.33 0.00 31.47 2.17
459 462 6.946165 TGTTGCATGCTTTACAAAAGAAATG 58.054 32.000 20.33 7.18 0.00 2.32
460 463 5.594724 TGCATGCTTTACAAAAGAAATGC 57.405 34.783 20.33 21.45 38.37 3.56
462 465 6.453943 TGCATGCTTTACAAAAGAAATGCTA 58.546 32.000 24.86 16.21 38.54 3.49
463 466 6.587226 TGCATGCTTTACAAAAGAAATGCTAG 59.413 34.615 24.86 0.00 38.54 3.42
465 468 7.201384 GCATGCTTTACAAAAGAAATGCTAGAC 60.201 37.037 21.20 0.00 36.64 2.59
466 469 6.370593 TGCTTTACAAAAGAAATGCTAGACG 58.629 36.000 3.63 0.00 0.00 4.18
467 470 6.017440 TGCTTTACAAAAGAAATGCTAGACGT 60.017 34.615 3.63 0.00 0.00 4.34
468 471 6.520104 GCTTTACAAAAGAAATGCTAGACGTC 59.480 38.462 7.70 7.70 0.00 4.34
469 472 7.485418 TTTACAAAAGAAATGCTAGACGTCA 57.515 32.000 19.50 2.84 0.00 4.35
472 475 5.050091 ACAAAAGAAATGCTAGACGTCACAG 60.050 40.000 19.50 15.00 0.00 3.66
473 476 3.944055 AGAAATGCTAGACGTCACAGT 57.056 42.857 19.50 9.29 0.00 3.55
474 477 3.579709 AGAAATGCTAGACGTCACAGTG 58.420 45.455 19.50 0.00 0.00 3.66
475 478 3.005897 AGAAATGCTAGACGTCACAGTGT 59.994 43.478 19.50 0.00 0.00 3.55
476 479 2.354109 ATGCTAGACGTCACAGTGTG 57.646 50.000 19.50 17.53 34.45 3.82
477 480 1.314730 TGCTAGACGTCACAGTGTGA 58.685 50.000 22.06 22.06 40.50 3.58
478 481 1.886542 TGCTAGACGTCACAGTGTGAT 59.113 47.619 27.82 14.03 44.63 3.06
487 490 3.859961 CGTCACAGTGTGATGTAGATTCC 59.140 47.826 29.66 14.00 44.63 3.01
488 491 4.618227 CGTCACAGTGTGATGTAGATTCCA 60.618 45.833 29.66 3.36 44.63 3.53
489 492 4.627467 GTCACAGTGTGATGTAGATTCCAC 59.373 45.833 27.82 8.25 44.63 4.02
490 493 4.283212 TCACAGTGTGATGTAGATTCCACA 59.717 41.667 22.06 0.00 37.67 4.17
491 494 4.996758 CACAGTGTGATGTAGATTCCACAA 59.003 41.667 18.83 0.00 40.63 3.33
492 495 5.469760 CACAGTGTGATGTAGATTCCACAAA 59.530 40.000 18.83 0.00 40.63 2.83
493 496 6.017192 CACAGTGTGATGTAGATTCCACAAAA 60.017 38.462 18.83 0.00 40.63 2.44
494 497 6.716628 ACAGTGTGATGTAGATTCCACAAAAT 59.283 34.615 0.00 0.00 40.63 1.82
495 498 7.231317 ACAGTGTGATGTAGATTCCACAAAATT 59.769 33.333 0.00 0.00 40.63 1.82
496 499 7.752239 CAGTGTGATGTAGATTCCACAAAATTC 59.248 37.037 0.00 0.00 40.63 2.17
517 520 0.846015 TATGGATGAAGGTGCCCCAG 59.154 55.000 0.00 0.00 0.00 4.45
537 540 6.431852 CCCCAGCAATTCAAATTTCAGATTTT 59.568 34.615 0.00 0.00 0.00 1.82
563 566 9.624373 TCACTCTTATTATAGTACTTCCTTCGT 57.376 33.333 0.00 0.00 0.00 3.85
564 567 9.881529 CACTCTTATTATAGTACTTCCTTCGTC 57.118 37.037 0.00 0.00 0.00 4.20
565 568 9.624373 ACTCTTATTATAGTACTTCCTTCGTCA 57.376 33.333 0.00 0.00 0.00 4.35
577 580 7.745620 ACTTCCTTCGTCATAAAATTCTTGT 57.254 32.000 0.00 0.00 0.00 3.16
578 581 7.807680 ACTTCCTTCGTCATAAAATTCTTGTC 58.192 34.615 0.00 0.00 0.00 3.18
579 582 7.661847 ACTTCCTTCGTCATAAAATTCTTGTCT 59.338 33.333 0.00 0.00 0.00 3.41
580 583 7.979444 TCCTTCGTCATAAAATTCTTGTCTT 57.021 32.000 0.00 0.00 0.00 3.01
581 584 9.496873 TTCCTTCGTCATAAAATTCTTGTCTTA 57.503 29.630 0.00 0.00 0.00 2.10
582 585 9.496873 TCCTTCGTCATAAAATTCTTGTCTTAA 57.503 29.630 0.00 0.00 0.00 1.85
615 618 9.991388 TTAAATACAAATGTATTAAGTCACGCC 57.009 29.630 16.77 0.00 46.98 5.68
616 619 7.859325 AATACAAATGTATTAAGTCACGCCT 57.141 32.000 15.31 0.00 46.15 5.52
617 620 5.796350 ACAAATGTATTAAGTCACGCCTC 57.204 39.130 0.00 0.00 0.00 4.70
618 621 5.488341 ACAAATGTATTAAGTCACGCCTCT 58.512 37.500 0.00 0.00 0.00 3.69
855 871 1.904990 GCTGTCTTCCTCTCCCCACC 61.905 65.000 0.00 0.00 0.00 4.61
885 902 4.393778 TCCACCCCCTCGTCCTCC 62.394 72.222 0.00 0.00 0.00 4.30
912 929 0.608130 TCCGTCCATCCACAACTCAG 59.392 55.000 0.00 0.00 0.00 3.35
1209 1226 1.077930 GCAGCAGGCCATCTTCTCA 60.078 57.895 5.01 0.00 36.11 3.27
1551 1577 1.153823 CGACCTCCGCTTCAACGAT 60.154 57.895 0.00 0.00 34.06 3.73
1769 1795 1.081892 CTCATCAACAACGGCCTCAG 58.918 55.000 0.00 0.00 0.00 3.35
2103 2129 4.722700 GCTTTCTCTGCCCGCCCA 62.723 66.667 0.00 0.00 0.00 5.36
2266 2292 0.592637 TGACAACAGAAGCATTGCCG 59.407 50.000 4.70 0.00 0.00 5.69
2535 2561 6.351286 GCATGGTGATAGGGAAATTTGAAAGT 60.351 38.462 0.00 0.00 0.00 2.66
2616 2645 3.761752 AGAGAGACAGGTTAAGCTGAGAC 59.238 47.826 34.80 24.43 0.00 3.36
2819 2863 7.832769 AGAATGTTCTCCTAACTGTTACTCTC 58.167 38.462 0.00 0.00 29.94 3.20
2820 2864 7.672239 AGAATGTTCTCCTAACTGTTACTCTCT 59.328 37.037 0.00 0.00 29.94 3.10
2864 2911 9.523168 ACTATGACACTATAAATCTACTCCCTC 57.477 37.037 0.00 0.00 0.00 4.30
2865 2912 9.747898 CTATGACACTATAAATCTACTCCCTCT 57.252 37.037 0.00 0.00 0.00 3.69
2866 2913 7.825331 TGACACTATAAATCTACTCCCTCTG 57.175 40.000 0.00 0.00 0.00 3.35
2867 2914 7.355101 TGACACTATAAATCTACTCCCTCTGT 58.645 38.462 0.00 0.00 0.00 3.41
2868 2915 7.839705 TGACACTATAAATCTACTCCCTCTGTT 59.160 37.037 0.00 0.00 0.00 3.16
2869 2916 8.611051 ACACTATAAATCTACTCCCTCTGTTT 57.389 34.615 0.00 0.00 0.00 2.83
2870 2917 9.047947 ACACTATAAATCTACTCCCTCTGTTTT 57.952 33.333 0.00 0.00 0.00 2.43
2871 2918 9.535878 CACTATAAATCTACTCCCTCTGTTTTC 57.464 37.037 0.00 0.00 0.00 2.29
2872 2919 9.495382 ACTATAAATCTACTCCCTCTGTTTTCT 57.505 33.333 0.00 0.00 0.00 2.52
2876 2923 7.800300 AATCTACTCCCTCTGTTTTCTTAGT 57.200 36.000 0.00 0.00 0.00 2.24
2877 2924 6.837471 TCTACTCCCTCTGTTTTCTTAGTC 57.163 41.667 0.00 0.00 0.00 2.59
2878 2925 4.893829 ACTCCCTCTGTTTTCTTAGTCC 57.106 45.455 0.00 0.00 0.00 3.85
2879 2926 3.258622 ACTCCCTCTGTTTTCTTAGTCCG 59.741 47.826 0.00 0.00 0.00 4.79
2880 2927 2.028385 TCCCTCTGTTTTCTTAGTCCGC 60.028 50.000 0.00 0.00 0.00 5.54
2881 2928 2.289444 CCCTCTGTTTTCTTAGTCCGCA 60.289 50.000 0.00 0.00 0.00 5.69
2882 2929 3.600388 CCTCTGTTTTCTTAGTCCGCAT 58.400 45.455 0.00 0.00 0.00 4.73
2883 2930 4.382685 CCCTCTGTTTTCTTAGTCCGCATA 60.383 45.833 0.00 0.00 0.00 3.14
2884 2931 5.360591 CCTCTGTTTTCTTAGTCCGCATAT 58.639 41.667 0.00 0.00 0.00 1.78
2885 2932 6.462487 CCCTCTGTTTTCTTAGTCCGCATATA 60.462 42.308 0.00 0.00 0.00 0.86
2886 2933 6.984474 CCTCTGTTTTCTTAGTCCGCATATAA 59.016 38.462 0.00 0.00 0.00 0.98
2887 2934 7.494625 CCTCTGTTTTCTTAGTCCGCATATAAA 59.505 37.037 0.00 0.00 0.00 1.40
2888 2935 8.780846 TCTGTTTTCTTAGTCCGCATATAAAA 57.219 30.769 0.00 0.00 0.00 1.52
2889 2936 9.391006 TCTGTTTTCTTAGTCCGCATATAAAAT 57.609 29.630 0.00 0.00 0.00 1.82
2900 2947 9.174166 AGTCCGCATATAAAATTTAGTCAAAGT 57.826 29.630 0.00 0.00 0.00 2.66
2901 2948 9.434559 GTCCGCATATAAAATTTAGTCAAAGTC 57.565 33.333 0.00 0.00 0.00 3.01
2902 2949 9.168451 TCCGCATATAAAATTTAGTCAAAGTCA 57.832 29.630 0.00 0.00 0.00 3.41
2903 2950 9.781834 CCGCATATAAAATTTAGTCAAAGTCAA 57.218 29.630 0.00 0.00 0.00 3.18
2915 2962 9.998106 TTTAGTCAAAGTCAAGCTTTATAGAGT 57.002 29.630 0.00 0.00 44.95 3.24
2916 2963 9.998106 TTAGTCAAAGTCAAGCTTTATAGAGTT 57.002 29.630 0.00 0.00 44.95 3.01
2917 2964 8.910351 AGTCAAAGTCAAGCTTTATAGAGTTT 57.090 30.769 10.15 10.15 44.95 2.66
2918 2965 8.778358 AGTCAAAGTCAAGCTTTATAGAGTTTG 58.222 33.333 24.99 24.99 44.95 2.93
2926 2973 9.998106 TCAAGCTTTATAGAGTTTGACTAACTT 57.002 29.630 15.67 0.00 47.00 2.66
2981 3028 8.694581 TGAAATCAATATTATCAGATGCACCA 57.305 30.769 0.00 0.00 0.00 4.17
2982 3029 9.304335 TGAAATCAATATTATCAGATGCACCAT 57.696 29.630 0.00 0.00 0.00 3.55
2983 3030 9.569167 GAAATCAATATTATCAGATGCACCATG 57.431 33.333 0.00 0.00 0.00 3.66
2984 3031 8.873186 AATCAATATTATCAGATGCACCATGA 57.127 30.769 0.00 0.00 0.00 3.07
2985 3032 8.873186 ATCAATATTATCAGATGCACCATGAA 57.127 30.769 0.00 0.00 0.00 2.57
2986 3033 8.694581 TCAATATTATCAGATGCACCATGAAA 57.305 30.769 0.00 0.00 0.00 2.69
2987 3034 8.570488 TCAATATTATCAGATGCACCATGAAAC 58.430 33.333 0.00 0.00 0.00 2.78
2988 3035 4.880886 TTATCAGATGCACCATGAAACG 57.119 40.909 0.00 0.00 0.00 3.60
2989 3036 2.183478 TCAGATGCACCATGAAACGT 57.817 45.000 0.00 0.00 0.00 3.99
2990 3037 3.326836 TCAGATGCACCATGAAACGTA 57.673 42.857 0.00 0.00 0.00 3.57
2991 3038 3.872696 TCAGATGCACCATGAAACGTAT 58.127 40.909 0.00 0.00 0.00 3.06
2992 3039 4.260985 TCAGATGCACCATGAAACGTATT 58.739 39.130 0.00 0.00 0.00 1.89
2993 3040 4.699735 TCAGATGCACCATGAAACGTATTT 59.300 37.500 0.00 0.00 0.00 1.40
2994 3041 5.182950 TCAGATGCACCATGAAACGTATTTT 59.817 36.000 0.00 0.00 0.00 1.82
2995 3042 5.512788 CAGATGCACCATGAAACGTATTTTC 59.487 40.000 0.00 0.00 43.63 2.29
3064 3111 8.891671 ATAAATTTGATCAAAGTTTGTGCAGT 57.108 26.923 31.53 13.16 39.07 4.40
3065 3112 7.614124 AAATTTGATCAAAGTTTGTGCAGTT 57.386 28.000 24.10 8.83 35.39 3.16
3066 3113 7.614124 AATTTGATCAAAGTTTGTGCAGTTT 57.386 28.000 24.17 7.98 33.32 2.66
3067 3114 6.406093 TTTGATCAAAGTTTGTGCAGTTTG 57.594 33.333 16.91 0.00 38.11 2.93
3068 3115 5.321959 TGATCAAAGTTTGTGCAGTTTGA 57.678 34.783 15.08 7.10 45.73 2.69
3069 3116 5.101628 TGATCAAAGTTTGTGCAGTTTGAC 58.898 37.500 15.08 3.67 44.91 3.18
3070 3117 4.782019 TCAAAGTTTGTGCAGTTTGACT 57.218 36.364 15.08 0.00 39.93 3.41
3071 3118 5.132897 TCAAAGTTTGTGCAGTTTGACTT 57.867 34.783 15.08 0.00 39.93 3.01
3072 3119 5.537188 TCAAAGTTTGTGCAGTTTGACTTT 58.463 33.333 15.08 0.00 39.93 2.66
3073 3120 5.610975 CAAAGTTTGTGCAGTTTGACTTTG 58.389 37.500 18.43 18.43 43.93 2.77
3074 3121 4.519540 AGTTTGTGCAGTTTGACTTTGT 57.480 36.364 0.00 0.00 0.00 2.83
3075 3122 4.485163 AGTTTGTGCAGTTTGACTTTGTC 58.515 39.130 0.00 0.00 0.00 3.18
3076 3123 4.218417 AGTTTGTGCAGTTTGACTTTGTCT 59.782 37.500 0.00 0.00 33.15 3.41
3077 3124 5.414454 AGTTTGTGCAGTTTGACTTTGTCTA 59.586 36.000 0.00 0.00 33.15 2.59
3078 3125 5.888691 TTGTGCAGTTTGACTTTGTCTAA 57.111 34.783 0.00 0.00 33.15 2.10
3079 3126 5.888691 TGTGCAGTTTGACTTTGTCTAAA 57.111 34.783 0.00 0.00 30.38 1.85
3080 3127 6.449635 TGTGCAGTTTGACTTTGTCTAAAT 57.550 33.333 0.00 0.00 30.38 1.40
3081 3128 6.494842 TGTGCAGTTTGACTTTGTCTAAATC 58.505 36.000 0.00 0.00 30.38 2.17
3082 3129 6.318648 TGTGCAGTTTGACTTTGTCTAAATCT 59.681 34.615 0.00 0.00 30.38 2.40
3083 3130 7.148086 TGTGCAGTTTGACTTTGTCTAAATCTT 60.148 33.333 0.00 0.00 30.38 2.40
3084 3131 8.342634 GTGCAGTTTGACTTTGTCTAAATCTTA 58.657 33.333 0.00 0.00 30.38 2.10
3085 3132 9.066892 TGCAGTTTGACTTTGTCTAAATCTTAT 57.933 29.630 0.00 0.00 30.38 1.73
3091 3138 8.365399 TGACTTTGTCTAAATCTTATATGCGG 57.635 34.615 0.00 0.00 33.15 5.69
3092 3139 8.201464 TGACTTTGTCTAAATCTTATATGCGGA 58.799 33.333 0.00 0.00 33.15 5.54
3093 3140 8.594881 ACTTTGTCTAAATCTTATATGCGGAG 57.405 34.615 0.00 0.00 0.00 4.63
3094 3141 8.204836 ACTTTGTCTAAATCTTATATGCGGAGT 58.795 33.333 0.00 0.00 0.00 3.85
3095 3142 9.692749 CTTTGTCTAAATCTTATATGCGGAGTA 57.307 33.333 0.00 0.00 0.00 2.59
3106 3153 8.836413 TCTTATATGCGGAGTAAAAAGAAATGG 58.164 33.333 0.00 0.00 0.00 3.16
3107 3154 8.740123 TTATATGCGGAGTAAAAAGAAATGGA 57.260 30.769 0.00 0.00 0.00 3.41
3108 3155 5.567138 ATGCGGAGTAAAAAGAAATGGAG 57.433 39.130 0.00 0.00 0.00 3.86
3109 3156 3.756434 TGCGGAGTAAAAAGAAATGGAGG 59.244 43.478 0.00 0.00 0.00 4.30
3110 3157 3.128764 GCGGAGTAAAAAGAAATGGAGGG 59.871 47.826 0.00 0.00 0.00 4.30
3111 3158 4.585879 CGGAGTAAAAAGAAATGGAGGGA 58.414 43.478 0.00 0.00 0.00 4.20
3112 3159 4.636206 CGGAGTAAAAAGAAATGGAGGGAG 59.364 45.833 0.00 0.00 0.00 4.30
3134 3181 9.729281 GGGAGTATCTATACTATCCTATACTGC 57.271 40.741 2.65 0.00 43.27 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 9.546428 CCCAAAATTCTTGTCTTAAATTTGTCT 57.454 29.630 0.00 0.00 33.95 3.41
70 71 9.541143 TCCCAAAATTCTTGTCTTAAATTTGTC 57.459 29.630 0.00 0.00 33.95 3.18
71 72 9.325198 GTCCCAAAATTCTTGTCTTAAATTTGT 57.675 29.630 0.00 0.00 33.95 2.83
72 73 8.487176 CGTCCCAAAATTCTTGTCTTAAATTTG 58.513 33.333 0.00 0.00 33.95 2.32
73 74 7.655732 CCGTCCCAAAATTCTTGTCTTAAATTT 59.344 33.333 0.00 0.00 34.86 1.82
74 75 7.014808 TCCGTCCCAAAATTCTTGTCTTAAATT 59.985 33.333 0.00 0.00 0.00 1.82
75 76 6.492087 TCCGTCCCAAAATTCTTGTCTTAAAT 59.508 34.615 0.00 0.00 0.00 1.40
76 77 5.828859 TCCGTCCCAAAATTCTTGTCTTAAA 59.171 36.000 0.00 0.00 0.00 1.52
77 78 5.378332 TCCGTCCCAAAATTCTTGTCTTAA 58.622 37.500 0.00 0.00 0.00 1.85
78 79 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
79 80 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
80 81 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
81 82 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
82 83 2.107552 TCCTCCGTCCCAAAATTCTTGT 59.892 45.455 0.00 0.00 0.00 3.16
83 84 2.790433 TCCTCCGTCCCAAAATTCTTG 58.210 47.619 0.00 0.00 0.00 3.02
84 85 3.181433 ACTTCCTCCGTCCCAAAATTCTT 60.181 43.478 0.00 0.00 0.00 2.52
85 86 2.375509 ACTTCCTCCGTCCCAAAATTCT 59.624 45.455 0.00 0.00 0.00 2.40
86 87 2.791655 ACTTCCTCCGTCCCAAAATTC 58.208 47.619 0.00 0.00 0.00 2.17
87 88 2.971901 ACTTCCTCCGTCCCAAAATT 57.028 45.000 0.00 0.00 0.00 1.82
88 89 3.521937 TCATACTTCCTCCGTCCCAAAAT 59.478 43.478 0.00 0.00 0.00 1.82
89 90 2.907696 TCATACTTCCTCCGTCCCAAAA 59.092 45.455 0.00 0.00 0.00 2.44
90 91 2.542550 TCATACTTCCTCCGTCCCAAA 58.457 47.619 0.00 0.00 0.00 3.28
91 92 2.241281 TCATACTTCCTCCGTCCCAA 57.759 50.000 0.00 0.00 0.00 4.12
92 93 2.235402 GTTTCATACTTCCTCCGTCCCA 59.765 50.000 0.00 0.00 0.00 4.37
93 94 2.500504 AGTTTCATACTTCCTCCGTCCC 59.499 50.000 0.00 0.00 31.29 4.46
94 95 3.889520 AGTTTCATACTTCCTCCGTCC 57.110 47.619 0.00 0.00 31.29 4.79
95 96 5.903810 ACATAGTTTCATACTTCCTCCGTC 58.096 41.667 0.00 0.00 38.33 4.79
96 97 5.657302 AGACATAGTTTCATACTTCCTCCGT 59.343 40.000 0.00 0.00 38.33 4.69
97 98 6.150396 AGACATAGTTTCATACTTCCTCCG 57.850 41.667 0.00 0.00 38.33 4.63
98 99 9.482627 CATAAGACATAGTTTCATACTTCCTCC 57.517 37.037 0.00 0.00 38.33 4.30
142 143 9.401058 AGTTATGGAGAAAAGGATTTACATCTG 57.599 33.333 0.00 0.00 37.28 2.90
154 155 7.678947 ACTGTGATCAAGTTATGGAGAAAAG 57.321 36.000 0.00 0.00 0.00 2.27
210 211 7.989826 ACTCTTTCTATTCCATAATGTTGTGC 58.010 34.615 0.00 0.00 0.00 4.57
267 270 5.306160 TCCTTGTAATAAGGGTAAGGATCGG 59.694 44.000 5.91 0.00 41.30 4.18
268 271 6.415206 TCCTTGTAATAAGGGTAAGGATCG 57.585 41.667 5.91 0.00 41.30 3.69
294 297 9.412460 TCCTCACAGAGCAATTCAATATTTTAT 57.588 29.630 0.00 0.00 0.00 1.40
295 298 8.677300 GTCCTCACAGAGCAATTCAATATTTTA 58.323 33.333 0.00 0.00 0.00 1.52
301 304 3.005554 CGTCCTCACAGAGCAATTCAAT 58.994 45.455 0.00 0.00 0.00 2.57
305 308 1.016130 CGCGTCCTCACAGAGCAATT 61.016 55.000 0.00 0.00 0.00 2.32
314 317 1.310933 TTAGGGAGTCGCGTCCTCAC 61.311 60.000 23.05 21.01 36.75 3.51
315 318 1.001764 TTAGGGAGTCGCGTCCTCA 60.002 57.895 23.05 9.53 36.75 3.86
316 319 1.432657 GTTAGGGAGTCGCGTCCTC 59.567 63.158 14.64 15.72 36.75 3.71
317 320 2.404995 CGTTAGGGAGTCGCGTCCT 61.405 63.158 14.64 14.68 36.75 3.85
318 321 2.101770 CGTTAGGGAGTCGCGTCC 59.898 66.667 5.77 6.61 35.64 4.79
319 322 0.796113 GAACGTTAGGGAGTCGCGTC 60.796 60.000 5.77 0.00 34.56 5.19
320 323 1.211190 GAACGTTAGGGAGTCGCGT 59.789 57.895 5.77 0.00 37.38 6.01
321 324 1.515736 GGAACGTTAGGGAGTCGCG 60.516 63.158 0.00 0.00 0.00 5.87
322 325 4.491101 GGAACGTTAGGGAGTCGC 57.509 61.111 0.00 0.00 0.00 5.19
335 338 1.092921 TGTCAGTGTGCCAACGGAAC 61.093 55.000 0.00 0.00 0.00 3.62
336 339 0.813610 CTGTCAGTGTGCCAACGGAA 60.814 55.000 0.00 0.00 0.00 4.30
337 340 1.227527 CTGTCAGTGTGCCAACGGA 60.228 57.895 0.00 0.00 0.00 4.69
338 341 2.253758 CCTGTCAGTGTGCCAACGG 61.254 63.158 0.00 0.00 0.00 4.44
339 342 1.523711 ACCTGTCAGTGTGCCAACG 60.524 57.895 0.00 0.00 0.00 4.10
340 343 1.447317 CCACCTGTCAGTGTGCCAAC 61.447 60.000 13.19 0.00 35.93 3.77
341 344 1.152984 CCACCTGTCAGTGTGCCAA 60.153 57.895 13.19 0.00 35.93 4.52
342 345 2.510411 CCACCTGTCAGTGTGCCA 59.490 61.111 13.19 0.00 35.93 4.92
343 346 2.980233 GCCACCTGTCAGTGTGCC 60.980 66.667 13.19 2.50 35.93 5.01
344 347 2.980233 GGCCACCTGTCAGTGTGC 60.980 66.667 13.19 6.19 35.93 4.57
345 348 1.302033 GAGGCCACCTGTCAGTGTG 60.302 63.158 5.01 12.17 35.93 3.82
346 349 1.762522 CTGAGGCCACCTGTCAGTGT 61.763 60.000 5.01 0.00 35.93 3.55
347 350 1.004080 CTGAGGCCACCTGTCAGTG 60.004 63.158 5.01 0.00 31.76 3.66
348 351 2.219875 CCTGAGGCCACCTGTCAGT 61.220 63.158 15.60 0.00 31.76 3.41
349 352 2.667418 CCTGAGGCCACCTGTCAG 59.333 66.667 5.01 8.90 31.76 3.51
350 353 3.640407 GCCTGAGGCCACCTGTCA 61.640 66.667 13.77 0.00 44.06 3.58
360 363 0.033796 ATTGATGTGTGGGCCTGAGG 60.034 55.000 4.53 0.00 0.00 3.86
361 364 1.100510 CATTGATGTGTGGGCCTGAG 58.899 55.000 4.53 0.00 0.00 3.35
362 365 0.323633 CCATTGATGTGTGGGCCTGA 60.324 55.000 4.53 0.00 0.00 3.86
363 366 1.952102 GCCATTGATGTGTGGGCCTG 61.952 60.000 4.53 0.00 38.70 4.85
364 367 1.683365 GCCATTGATGTGTGGGCCT 60.683 57.895 4.53 0.00 38.70 5.19
365 368 2.894919 GCCATTGATGTGTGGGCC 59.105 61.111 0.00 0.00 38.70 5.80
367 370 2.059786 GGGGCCATTGATGTGTGGG 61.060 63.158 4.39 0.00 36.00 4.61
368 371 0.688418 ATGGGGCCATTGATGTGTGG 60.688 55.000 4.39 0.00 38.55 4.17
369 372 0.462375 CATGGGGCCATTGATGTGTG 59.538 55.000 4.39 0.00 33.90 3.82
370 373 0.041535 ACATGGGGCCATTGATGTGT 59.958 50.000 4.39 0.00 33.90 3.72
371 374 0.748450 GACATGGGGCCATTGATGTG 59.252 55.000 4.39 0.00 33.90 3.21
372 375 0.335705 TGACATGGGGCCATTGATGT 59.664 50.000 4.39 7.66 33.90 3.06
373 376 1.037493 CTGACATGGGGCCATTGATG 58.963 55.000 4.39 4.17 33.90 3.07
374 377 0.105862 CCTGACATGGGGCCATTGAT 60.106 55.000 4.39 0.00 33.90 2.57
375 378 1.307309 CCTGACATGGGGCCATTGA 59.693 57.895 4.39 0.00 33.90 2.57
376 379 1.759299 CCCTGACATGGGGCCATTG 60.759 63.158 4.39 4.40 43.45 2.82
377 380 2.691732 CCCTGACATGGGGCCATT 59.308 61.111 4.39 0.00 43.45 3.16
384 387 0.392998 GTACTGCACCCCTGACATGG 60.393 60.000 0.00 0.00 0.00 3.66
385 388 0.740868 CGTACTGCACCCCTGACATG 60.741 60.000 0.00 0.00 0.00 3.21
386 389 1.192146 ACGTACTGCACCCCTGACAT 61.192 55.000 0.00 0.00 0.00 3.06
387 390 1.812686 GACGTACTGCACCCCTGACA 61.813 60.000 0.00 0.00 0.00 3.58
388 391 1.080025 GACGTACTGCACCCCTGAC 60.080 63.158 0.00 0.00 0.00 3.51
389 392 1.532078 TGACGTACTGCACCCCTGA 60.532 57.895 0.00 0.00 0.00 3.86
390 393 1.079819 CTGACGTACTGCACCCCTG 60.080 63.158 0.00 0.00 0.00 4.45
391 394 1.228769 TCTGACGTACTGCACCCCT 60.229 57.895 0.00 0.00 0.00 4.79
392 395 1.080025 GTCTGACGTACTGCACCCC 60.080 63.158 0.00 0.00 0.00 4.95
393 396 1.443872 CGTCTGACGTACTGCACCC 60.444 63.158 21.30 0.00 36.74 4.61
394 397 0.170561 ATCGTCTGACGTACTGCACC 59.829 55.000 27.16 0.00 43.14 5.01
395 398 1.536149 GATCGTCTGACGTACTGCAC 58.464 55.000 27.16 10.07 43.14 4.57
396 399 0.450583 GGATCGTCTGACGTACTGCA 59.549 55.000 27.16 9.59 43.14 4.41
397 400 0.733729 AGGATCGTCTGACGTACTGC 59.266 55.000 27.16 18.19 43.14 4.40
398 401 2.007608 TCAGGATCGTCTGACGTACTG 58.992 52.381 27.90 27.90 43.14 2.74
399 402 2.398252 TCAGGATCGTCTGACGTACT 57.602 50.000 27.16 20.08 43.14 2.73
400 403 2.031857 GGATCAGGATCGTCTGACGTAC 60.032 54.545 27.16 20.85 45.27 3.67
401 404 2.219458 GGATCAGGATCGTCTGACGTA 58.781 52.381 27.16 15.68 45.27 3.57
402 405 1.025812 GGATCAGGATCGTCTGACGT 58.974 55.000 27.16 15.95 45.27 4.34
403 406 0.040870 CGGATCAGGATCGTCTGACG 60.041 60.000 23.33 23.33 45.27 4.35
404 407 0.318275 GCGGATCAGGATCGTCTGAC 60.318 60.000 4.06 0.00 45.27 3.51
405 408 0.466372 AGCGGATCAGGATCGTCTGA 60.466 55.000 4.41 4.41 46.32 3.27
406 409 0.039617 GAGCGGATCAGGATCGTCTG 60.040 60.000 3.38 0.00 38.69 3.51
407 410 0.179004 AGAGCGGATCAGGATCGTCT 60.179 55.000 0.00 3.07 38.69 4.18
408 411 0.039617 CAGAGCGGATCAGGATCGTC 60.040 60.000 0.00 1.17 38.69 4.20
409 412 0.753479 ACAGAGCGGATCAGGATCGT 60.753 55.000 0.00 0.00 38.69 3.73
410 413 0.318529 CACAGAGCGGATCAGGATCG 60.319 60.000 0.00 1.08 38.69 3.69
411 414 1.035923 TCACAGAGCGGATCAGGATC 58.964 55.000 0.55 0.55 37.11 3.36
412 415 1.343789 CATCACAGAGCGGATCAGGAT 59.656 52.381 0.00 0.00 0.00 3.24
413 416 0.749049 CATCACAGAGCGGATCAGGA 59.251 55.000 0.00 0.00 0.00 3.86
414 417 0.879400 GCATCACAGAGCGGATCAGG 60.879 60.000 0.00 0.00 0.00 3.86
415 418 0.879400 GGCATCACAGAGCGGATCAG 60.879 60.000 0.00 0.00 0.00 2.90
416 419 1.144716 GGCATCACAGAGCGGATCA 59.855 57.895 0.00 0.00 0.00 2.92
417 420 0.879400 CAGGCATCACAGAGCGGATC 60.879 60.000 0.00 0.00 0.00 3.36
418 421 1.145598 CAGGCATCACAGAGCGGAT 59.854 57.895 0.00 0.00 0.00 4.18
419 422 1.830587 AACAGGCATCACAGAGCGGA 61.831 55.000 0.00 0.00 0.00 5.54
420 423 1.376424 AACAGGCATCACAGAGCGG 60.376 57.895 0.00 0.00 0.00 5.52
421 424 1.792301 CAACAGGCATCACAGAGCG 59.208 57.895 0.00 0.00 0.00 5.03
422 425 1.505353 GCAACAGGCATCACAGAGC 59.495 57.895 0.00 0.00 43.97 4.09
432 435 2.437200 TTGTAAAGCATGCAACAGGC 57.563 45.000 21.98 5.31 41.74 4.85
437 440 5.759273 AGCATTTCTTTTGTAAAGCATGCAA 59.241 32.000 21.98 1.21 36.73 4.08
454 457 3.121944 CACACTGTGACGTCTAGCATTTC 59.878 47.826 17.92 0.00 35.23 2.17
456 459 2.296190 TCACACTGTGACGTCTAGCATT 59.704 45.455 17.92 4.92 37.67 3.56
458 461 1.314730 TCACACTGTGACGTCTAGCA 58.685 50.000 17.92 11.81 37.67 3.49
459 462 2.254459 CATCACACTGTGACGTCTAGC 58.746 52.381 17.92 7.69 45.65 3.42
460 463 3.560902 ACATCACACTGTGACGTCTAG 57.439 47.619 17.92 16.61 45.65 2.43
462 465 3.146847 TCTACATCACACTGTGACGTCT 58.853 45.455 13.92 0.00 45.65 4.18
463 466 3.554259 TCTACATCACACTGTGACGTC 57.446 47.619 13.92 9.11 45.65 4.34
465 468 3.859961 GGAATCTACATCACACTGTGACG 59.140 47.826 15.86 8.89 45.65 4.35
466 469 4.627467 GTGGAATCTACATCACACTGTGAC 59.373 45.833 15.86 0.00 45.65 3.67
467 470 4.283212 TGTGGAATCTACATCACACTGTGA 59.717 41.667 15.86 14.26 46.90 3.58
468 471 4.568956 TGTGGAATCTACATCACACTGTG 58.431 43.478 6.19 6.19 35.52 3.66
469 472 4.890158 TGTGGAATCTACATCACACTGT 57.110 40.909 0.00 0.00 35.52 3.55
472 475 7.592938 TGAATTTTGTGGAATCTACATCACAC 58.407 34.615 0.00 0.00 39.46 3.82
473 476 7.757941 TGAATTTTGTGGAATCTACATCACA 57.242 32.000 0.00 0.00 38.21 3.58
476 479 9.903682 CCATATGAATTTTGTGGAATCTACATC 57.096 33.333 3.65 0.00 31.59 3.06
477 480 9.645128 TCCATATGAATTTTGTGGAATCTACAT 57.355 29.630 3.65 0.00 36.12 2.29
478 481 9.645128 ATCCATATGAATTTTGTGGAATCTACA 57.355 29.630 3.65 0.00 41.83 2.74
479 482 9.903682 CATCCATATGAATTTTGTGGAATCTAC 57.096 33.333 3.65 0.00 41.83 2.59
480 483 9.865152 TCATCCATATGAATTTTGTGGAATCTA 57.135 29.630 3.65 0.00 41.83 1.98
481 484 8.771521 TCATCCATATGAATTTTGTGGAATCT 57.228 30.769 3.65 0.00 41.83 2.40
517 520 8.985805 AGAGTGAAAATCTGAAATTTGAATTGC 58.014 29.630 0.00 0.00 41.33 3.56
537 540 9.624373 ACGAAGGAAGTACTATAATAAGAGTGA 57.376 33.333 0.00 0.00 0.00 3.41
550 553 8.936864 CAAGAATTTTATGACGAAGGAAGTACT 58.063 33.333 0.00 0.00 0.00 2.73
551 554 8.718734 ACAAGAATTTTATGACGAAGGAAGTAC 58.281 33.333 0.00 0.00 0.00 2.73
552 555 8.842358 ACAAGAATTTTATGACGAAGGAAGTA 57.158 30.769 0.00 0.00 0.00 2.24
553 556 7.661847 AGACAAGAATTTTATGACGAAGGAAGT 59.338 33.333 0.00 0.00 0.00 3.01
554 557 8.034058 AGACAAGAATTTTATGACGAAGGAAG 57.966 34.615 0.00 0.00 0.00 3.46
555 558 7.979444 AGACAAGAATTTTATGACGAAGGAA 57.021 32.000 0.00 0.00 0.00 3.36
589 592 9.991388 GGCGTGACTTAATACATTTGTATTTAA 57.009 29.630 18.25 10.96 45.90 1.52
590 593 9.386010 AGGCGTGACTTAATACATTTGTATTTA 57.614 29.630 18.25 10.50 45.90 1.40
591 594 8.276252 AGGCGTGACTTAATACATTTGTATTT 57.724 30.769 18.25 4.08 45.90 1.40
593 596 7.272978 AGAGGCGTGACTTAATACATTTGTAT 58.727 34.615 0.00 0.00 42.60 2.29
594 597 6.636705 AGAGGCGTGACTTAATACATTTGTA 58.363 36.000 0.00 0.00 34.67 2.41
595 598 5.488341 AGAGGCGTGACTTAATACATTTGT 58.512 37.500 0.00 0.00 0.00 2.83
596 599 5.580691 TGAGAGGCGTGACTTAATACATTTG 59.419 40.000 0.00 0.00 0.00 2.32
597 600 5.730550 TGAGAGGCGTGACTTAATACATTT 58.269 37.500 0.00 0.00 0.00 2.32
598 601 5.339008 TGAGAGGCGTGACTTAATACATT 57.661 39.130 0.00 0.00 0.00 2.71
599 602 4.737946 GCTGAGAGGCGTGACTTAATACAT 60.738 45.833 0.00 0.00 0.00 2.29
600 603 3.428999 GCTGAGAGGCGTGACTTAATACA 60.429 47.826 0.00 0.00 0.00 2.29
601 604 3.117046 GCTGAGAGGCGTGACTTAATAC 58.883 50.000 0.00 0.00 0.00 1.89
602 605 2.100916 GGCTGAGAGGCGTGACTTAATA 59.899 50.000 0.00 0.00 0.00 0.98
603 606 1.134670 GGCTGAGAGGCGTGACTTAAT 60.135 52.381 0.00 0.00 0.00 1.40
604 607 0.246635 GGCTGAGAGGCGTGACTTAA 59.753 55.000 0.00 0.00 0.00 1.85
605 608 1.605058 GGGCTGAGAGGCGTGACTTA 61.605 60.000 0.00 0.00 42.43 2.24
606 609 2.659610 GGCTGAGAGGCGTGACTT 59.340 61.111 0.00 0.00 0.00 3.01
607 610 3.386237 GGGCTGAGAGGCGTGACT 61.386 66.667 0.00 0.00 42.43 3.41
608 611 3.363844 GAGGGCTGAGAGGCGTGAC 62.364 68.421 0.00 0.00 42.43 3.67
609 612 3.071206 GAGGGCTGAGAGGCGTGA 61.071 66.667 0.00 0.00 42.43 4.35
610 613 3.073735 AGAGGGCTGAGAGGCGTG 61.074 66.667 0.00 0.00 42.43 5.34
611 614 3.073735 CAGAGGGCTGAGAGGCGT 61.074 66.667 0.00 0.00 45.17 5.68
612 615 3.847602 CCAGAGGGCTGAGAGGCG 61.848 72.222 0.00 0.00 45.17 5.52
855 871 2.294078 GGTGGAGGTGGAGGTGGAG 61.294 68.421 0.00 0.00 0.00 3.86
885 902 1.834822 GGATGGACGGAGGAGGAGG 60.835 68.421 0.00 0.00 0.00 4.30
912 929 1.900237 CGCTAAGATTTGGCAGCAAC 58.100 50.000 0.00 0.00 36.91 4.17
1209 1226 1.481056 CGGTGAGGTTCTTGGGGTCT 61.481 60.000 0.00 0.00 0.00 3.85
1312 1332 2.338984 GTGGTTGAGGTCGACGCT 59.661 61.111 9.92 7.88 0.00 5.07
2187 2213 1.833187 ATGGCATGGGGTATACTGGT 58.167 50.000 0.00 0.00 0.00 4.00
2193 2219 1.003839 CGCGTATGGCATGGGGTAT 60.004 57.895 10.98 0.00 43.84 2.73
2266 2292 0.313987 CGGCAAGGGAAAGTGAAACC 59.686 55.000 0.00 0.00 37.80 3.27
2535 2561 1.419387 CCAAGCCCAATTTGTTCCCAA 59.581 47.619 0.00 0.00 0.00 4.12
2616 2645 6.016024 TCACAACTTTTCCATGGATTTCTCAG 60.016 38.462 17.06 7.89 0.00 3.35
2782 2824 1.740025 GAACATTCTCCAAGAAGCCCG 59.260 52.381 0.00 0.00 37.69 6.13
2819 2863 9.760660 GTCATAGTACAAAATTTGTAAGAGCAG 57.239 33.333 18.79 8.48 46.72 4.24
2820 2864 9.278978 TGTCATAGTACAAAATTTGTAAGAGCA 57.721 29.630 18.79 11.01 46.72 4.26
2856 2903 4.461781 CGGACTAAGAAAACAGAGGGAGTA 59.538 45.833 0.00 0.00 0.00 2.59
2857 2904 3.258622 CGGACTAAGAAAACAGAGGGAGT 59.741 47.826 0.00 0.00 0.00 3.85
2858 2905 3.851098 CGGACTAAGAAAACAGAGGGAG 58.149 50.000 0.00 0.00 0.00 4.30
2859 2906 2.028385 GCGGACTAAGAAAACAGAGGGA 60.028 50.000 0.00 0.00 0.00 4.20
2860 2907 2.289444 TGCGGACTAAGAAAACAGAGGG 60.289 50.000 0.00 0.00 0.00 4.30
2861 2908 3.040147 TGCGGACTAAGAAAACAGAGG 57.960 47.619 0.00 0.00 0.00 3.69
2862 2909 8.420374 TTTATATGCGGACTAAGAAAACAGAG 57.580 34.615 0.00 0.00 0.00 3.35
2863 2910 8.780846 TTTTATATGCGGACTAAGAAAACAGA 57.219 30.769 0.00 0.00 0.00 3.41
2874 2921 9.174166 ACTTTGACTAAATTTTATATGCGGACT 57.826 29.630 0.00 0.00 0.00 3.85
2875 2922 9.434559 GACTTTGACTAAATTTTATATGCGGAC 57.565 33.333 0.00 0.00 0.00 4.79
2876 2923 9.168451 TGACTTTGACTAAATTTTATATGCGGA 57.832 29.630 0.00 0.00 0.00 5.54
2877 2924 9.781834 TTGACTTTGACTAAATTTTATATGCGG 57.218 29.630 0.00 0.00 0.00 5.69
2897 2944 9.998106 TTAGTCAAACTCTATAAAGCTTGACTT 57.002 29.630 23.23 12.05 41.70 3.01
2898 2945 9.425577 GTTAGTCAAACTCTATAAAGCTTGACT 57.574 33.333 22.20 22.20 36.89 3.41
2899 2946 9.425577 AGTTAGTCAAACTCTATAAAGCTTGAC 57.574 33.333 12.49 12.49 45.64 3.18
2955 3002 9.304335 TGGTGCATCTGATAATATTGATTTCAT 57.696 29.630 0.00 0.00 0.00 2.57
2956 3003 8.694581 TGGTGCATCTGATAATATTGATTTCA 57.305 30.769 0.00 0.00 0.00 2.69
2957 3004 9.569167 CATGGTGCATCTGATAATATTGATTTC 57.431 33.333 0.00 0.00 0.00 2.17
2958 3005 9.304335 TCATGGTGCATCTGATAATATTGATTT 57.696 29.630 0.00 0.00 0.00 2.17
2959 3006 8.873186 TCATGGTGCATCTGATAATATTGATT 57.127 30.769 0.00 0.00 0.00 2.57
2960 3007 8.873186 TTCATGGTGCATCTGATAATATTGAT 57.127 30.769 0.00 0.00 0.00 2.57
2961 3008 8.570488 GTTTCATGGTGCATCTGATAATATTGA 58.430 33.333 0.00 0.00 0.00 2.57
2962 3009 7.536281 CGTTTCATGGTGCATCTGATAATATTG 59.464 37.037 0.00 0.00 0.00 1.90
2963 3010 7.229306 ACGTTTCATGGTGCATCTGATAATATT 59.771 33.333 0.00 0.00 0.00 1.28
2964 3011 6.712095 ACGTTTCATGGTGCATCTGATAATAT 59.288 34.615 0.00 0.00 0.00 1.28
2965 3012 6.054941 ACGTTTCATGGTGCATCTGATAATA 58.945 36.000 0.00 0.00 0.00 0.98
2966 3013 4.883585 ACGTTTCATGGTGCATCTGATAAT 59.116 37.500 0.00 0.00 0.00 1.28
2967 3014 4.260985 ACGTTTCATGGTGCATCTGATAA 58.739 39.130 0.00 0.00 0.00 1.75
2968 3015 3.872696 ACGTTTCATGGTGCATCTGATA 58.127 40.909 0.00 0.00 0.00 2.15
2969 3016 2.715046 ACGTTTCATGGTGCATCTGAT 58.285 42.857 0.00 0.00 0.00 2.90
2970 3017 2.183478 ACGTTTCATGGTGCATCTGA 57.817 45.000 0.00 0.00 0.00 3.27
2971 3018 4.621068 AATACGTTTCATGGTGCATCTG 57.379 40.909 0.00 0.00 0.00 2.90
2972 3019 5.640732 GAAAATACGTTTCATGGTGCATCT 58.359 37.500 0.00 0.00 44.42 2.90
2973 3020 5.932021 GAAAATACGTTTCATGGTGCATC 57.068 39.130 0.00 0.00 44.42 3.91
3038 3085 9.979578 ACTGCACAAACTTTGATCAAATTTATA 57.020 25.926 20.76 0.00 0.00 0.98
3039 3086 8.891671 ACTGCACAAACTTTGATCAAATTTAT 57.108 26.923 20.76 10.77 0.00 1.40
3040 3087 8.715191 AACTGCACAAACTTTGATCAAATTTA 57.285 26.923 20.76 6.03 0.00 1.40
3041 3088 7.614124 AACTGCACAAACTTTGATCAAATTT 57.386 28.000 20.76 18.05 0.00 1.82
3042 3089 7.333921 TCAAACTGCACAAACTTTGATCAAATT 59.666 29.630 20.76 13.01 29.66 1.82
3043 3090 6.817641 TCAAACTGCACAAACTTTGATCAAAT 59.182 30.769 20.76 4.90 29.66 2.32
3044 3091 6.090628 GTCAAACTGCACAAACTTTGATCAAA 59.909 34.615 19.45 19.45 35.61 2.69
3045 3092 5.576384 GTCAAACTGCACAAACTTTGATCAA 59.424 36.000 3.38 3.38 35.61 2.57
3046 3093 5.101628 GTCAAACTGCACAAACTTTGATCA 58.898 37.500 8.55 0.00 35.61 2.92
3047 3094 5.343249 AGTCAAACTGCACAAACTTTGATC 58.657 37.500 8.55 0.60 35.61 2.92
3048 3095 5.329035 AGTCAAACTGCACAAACTTTGAT 57.671 34.783 8.55 0.00 35.61 2.57
3049 3096 4.782019 AGTCAAACTGCACAAACTTTGA 57.218 36.364 8.55 0.00 31.68 2.69
3050 3097 5.610975 CAAAGTCAAACTGCACAAACTTTG 58.389 37.500 15.29 15.29 43.84 2.77
3051 3098 5.296748 ACAAAGTCAAACTGCACAAACTTT 58.703 33.333 0.00 0.00 37.41 2.66
3052 3099 4.881920 ACAAAGTCAAACTGCACAAACTT 58.118 34.783 0.00 0.00 0.00 2.66
3053 3100 4.218417 AGACAAAGTCAAACTGCACAAACT 59.782 37.500 0.00 0.00 34.60 2.66
3054 3101 4.485163 AGACAAAGTCAAACTGCACAAAC 58.515 39.130 0.00 0.00 34.60 2.93
3055 3102 4.782019 AGACAAAGTCAAACTGCACAAA 57.218 36.364 0.00 0.00 34.60 2.83
3056 3103 5.888691 TTAGACAAAGTCAAACTGCACAA 57.111 34.783 0.00 0.00 34.60 3.33
3057 3104 5.888691 TTTAGACAAAGTCAAACTGCACA 57.111 34.783 0.00 0.00 34.60 4.57
3058 3105 6.729187 AGATTTAGACAAAGTCAAACTGCAC 58.271 36.000 0.00 0.00 34.60 4.57
3059 3106 6.942532 AGATTTAGACAAAGTCAAACTGCA 57.057 33.333 0.00 0.00 34.60 4.41
3065 3112 8.826710 CCGCATATAAGATTTAGACAAAGTCAA 58.173 33.333 0.00 0.00 34.60 3.18
3066 3113 8.201464 TCCGCATATAAGATTTAGACAAAGTCA 58.799 33.333 0.00 0.00 34.60 3.41
3067 3114 8.589335 TCCGCATATAAGATTTAGACAAAGTC 57.411 34.615 0.00 0.00 0.00 3.01
3068 3115 8.204836 ACTCCGCATATAAGATTTAGACAAAGT 58.795 33.333 0.00 0.00 0.00 2.66
3069 3116 8.594881 ACTCCGCATATAAGATTTAGACAAAG 57.405 34.615 0.00 0.00 0.00 2.77
3080 3127 8.836413 CCATTTCTTTTTACTCCGCATATAAGA 58.164 33.333 0.00 0.00 0.00 2.10
3081 3128 8.836413 TCCATTTCTTTTTACTCCGCATATAAG 58.164 33.333 0.00 0.00 0.00 1.73
3082 3129 8.740123 TCCATTTCTTTTTACTCCGCATATAA 57.260 30.769 0.00 0.00 0.00 0.98
3083 3130 7.444183 CCTCCATTTCTTTTTACTCCGCATATA 59.556 37.037 0.00 0.00 0.00 0.86
3084 3131 6.263168 CCTCCATTTCTTTTTACTCCGCATAT 59.737 38.462 0.00 0.00 0.00 1.78
3085 3132 5.588648 CCTCCATTTCTTTTTACTCCGCATA 59.411 40.000 0.00 0.00 0.00 3.14
3086 3133 4.399303 CCTCCATTTCTTTTTACTCCGCAT 59.601 41.667 0.00 0.00 0.00 4.73
3087 3134 3.756434 CCTCCATTTCTTTTTACTCCGCA 59.244 43.478 0.00 0.00 0.00 5.69
3088 3135 3.128764 CCCTCCATTTCTTTTTACTCCGC 59.871 47.826 0.00 0.00 0.00 5.54
3089 3136 4.585879 TCCCTCCATTTCTTTTTACTCCG 58.414 43.478 0.00 0.00 0.00 4.63
3090 3137 5.571285 ACTCCCTCCATTTCTTTTTACTCC 58.429 41.667 0.00 0.00 0.00 3.85
3091 3138 8.268605 AGATACTCCCTCCATTTCTTTTTACTC 58.731 37.037 0.00 0.00 0.00 2.59
3092 3139 8.164057 AGATACTCCCTCCATTTCTTTTTACT 57.836 34.615 0.00 0.00 0.00 2.24
3096 3143 9.453830 AGTATAGATACTCCCTCCATTTCTTTT 57.546 33.333 0.00 0.00 39.27 2.27
3099 3146 9.930158 GATAGTATAGATACTCCCTCCATTTCT 57.070 37.037 5.46 0.00 42.31 2.52
3100 3147 9.138596 GGATAGTATAGATACTCCCTCCATTTC 57.861 40.741 5.46 0.00 42.31 2.17
3101 3148 8.862097 AGGATAGTATAGATACTCCCTCCATTT 58.138 37.037 18.63 5.35 42.31 2.32
3102 3149 8.427605 AGGATAGTATAGATACTCCCTCCATT 57.572 38.462 18.63 5.79 42.31 3.16
3103 3150 9.712193 ATAGGATAGTATAGATACTCCCTCCAT 57.288 37.037 19.04 10.81 42.31 3.41
3108 3155 9.729281 GCAGTATAGGATAGTATAGATACTCCC 57.271 40.741 5.46 8.65 42.31 4.30
3134 3181 6.013898 ACACCATGGGATACATCAAGAGATAG 60.014 42.308 18.09 0.00 37.84 2.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.