Multiple sequence alignment - TraesCS1A01G100000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G100000 chr1A 100.000 2703 0 0 1 2703 96445461 96448163 0.000000e+00 4992
1 TraesCS1A01G100000 chr1A 85.211 1704 214 29 343 2021 96438091 96439781 0.000000e+00 1716
2 TraesCS1A01G100000 chr1A 97.941 340 3 2 1 339 401680408 401680072 1.080000e-163 586
3 TraesCS1A01G100000 chr1A 84.679 483 46 15 2076 2533 96439773 96440252 8.820000e-125 457
4 TraesCS1A01G100000 chr1D 95.253 2212 96 5 340 2545 79078565 79076357 0.000000e+00 3494
5 TraesCS1A01G100000 chr1D 84.615 1703 196 45 344 2021 79088520 79086859 0.000000e+00 1633
6 TraesCS1A01G100000 chr1D 84.898 490 51 9 2076 2545 79086867 79086381 8.760000e-130 473
7 TraesCS1A01G100000 chr1B 94.686 1242 61 2 340 1576 129513633 129512392 0.000000e+00 1923
8 TraesCS1A01G100000 chr1B 85.840 1702 202 31 344 2021 129553336 129551650 0.000000e+00 1772
9 TraesCS1A01G100000 chr1B 90.173 865 64 9 1690 2545 129512395 129511543 0.000000e+00 1107
10 TraesCS1A01G100000 chr1B 88.272 324 35 3 2076 2397 129551658 129551336 4.220000e-103 385
11 TraesCS1A01G100000 chr1B 75.090 835 178 23 698 1517 129177231 129176412 1.980000e-96 363
12 TraesCS1A01G100000 chr2B 99.410 339 2 0 1 339 214003436 214003774 1.380000e-172 616
13 TraesCS1A01G100000 chr5A 98.529 340 2 2 1 339 368097218 368096881 4.980000e-167 597
14 TraesCS1A01G100000 chr5B 97.947 341 4 2 1 340 125796383 125796721 3.000000e-164 588
15 TraesCS1A01G100000 chr5B 97.654 341 6 1 1 341 141575402 141575064 3.880000e-163 584
16 TraesCS1A01G100000 chr4A 97.647 340 3 2 1 339 492348161 492348496 1.800000e-161 579
17 TraesCS1A01G100000 chr4A 96.165 339 8 3 1 338 63748889 63748555 1.410000e-152 549
18 TraesCS1A01G100000 chr4A 85.465 344 38 7 3 341 519197758 519198094 5.540000e-92 348
19 TraesCS1A01G100000 chr3B 97.101 345 5 3 1 340 426996063 426995719 6.490000e-161 577


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G100000 chr1A 96445461 96448163 2702 False 4992.0 4992 100.0000 1 2703 1 chr1A.!!$F1 2702
1 TraesCS1A01G100000 chr1A 96438091 96440252 2161 False 1086.5 1716 84.9450 343 2533 2 chr1A.!!$F2 2190
2 TraesCS1A01G100000 chr1D 79076357 79078565 2208 True 3494.0 3494 95.2530 340 2545 1 chr1D.!!$R1 2205
3 TraesCS1A01G100000 chr1D 79086381 79088520 2139 True 1053.0 1633 84.7565 344 2545 2 chr1D.!!$R2 2201
4 TraesCS1A01G100000 chr1B 129511543 129513633 2090 True 1515.0 1923 92.4295 340 2545 2 chr1B.!!$R2 2205
5 TraesCS1A01G100000 chr1B 129551336 129553336 2000 True 1078.5 1772 87.0560 344 2397 2 chr1B.!!$R3 2053
6 TraesCS1A01G100000 chr1B 129176412 129177231 819 True 363.0 363 75.0900 698 1517 1 chr1B.!!$R1 819

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
165 166 0.036105 CTGTGTAGCCCTGTGATGCA 60.036 55.0 0.0 0.0 0.0 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2114 2147 0.03392 TATCCAGCATTCGCGCATCT 59.966 50.0 8.75 0.0 45.49 2.9 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.793505 ACTACTTCCTCCGTCTCAAAATAT 57.206 37.500 0.00 0.00 0.00 1.28
24 25 7.893124 ACTACTTCCTCCGTCTCAAAATATA 57.107 36.000 0.00 0.00 0.00 0.86
25 26 8.302515 ACTACTTCCTCCGTCTCAAAATATAA 57.697 34.615 0.00 0.00 0.00 0.98
26 27 8.414778 ACTACTTCCTCCGTCTCAAAATATAAG 58.585 37.037 0.00 0.00 0.00 1.73
27 28 7.419711 ACTTCCTCCGTCTCAAAATATAAGA 57.580 36.000 0.00 0.00 0.00 2.10
28 29 7.848128 ACTTCCTCCGTCTCAAAATATAAGAA 58.152 34.615 0.00 0.00 0.00 2.52
29 30 7.764901 ACTTCCTCCGTCTCAAAATATAAGAAC 59.235 37.037 0.00 0.00 0.00 3.01
30 31 7.177832 TCCTCCGTCTCAAAATATAAGAACA 57.822 36.000 0.00 0.00 0.00 3.18
31 32 7.792032 TCCTCCGTCTCAAAATATAAGAACAT 58.208 34.615 0.00 0.00 0.00 2.71
32 33 8.265055 TCCTCCGTCTCAAAATATAAGAACATT 58.735 33.333 0.00 0.00 0.00 2.71
33 34 8.893727 CCTCCGTCTCAAAATATAAGAACATTT 58.106 33.333 0.00 0.00 0.00 2.32
77 78 8.605746 TCAAAAACGTTCTTATATTATGGACGG 58.394 33.333 0.00 0.00 38.66 4.79
78 79 8.605746 CAAAAACGTTCTTATATTATGGACGGA 58.394 33.333 0.00 0.00 38.66 4.69
79 80 7.941795 AAACGTTCTTATATTATGGACGGAG 57.058 36.000 0.00 0.00 38.66 4.63
80 81 6.022163 ACGTTCTTATATTATGGACGGAGG 57.978 41.667 0.00 0.00 38.66 4.30
81 82 5.047519 ACGTTCTTATATTATGGACGGAGGG 60.048 44.000 0.00 0.00 38.66 4.30
82 83 5.184479 CGTTCTTATATTATGGACGGAGGGA 59.816 44.000 0.00 0.00 32.85 4.20
83 84 6.625300 CGTTCTTATATTATGGACGGAGGGAG 60.625 46.154 0.00 0.00 32.85 4.30
84 85 5.900437 TCTTATATTATGGACGGAGGGAGT 58.100 41.667 0.00 0.00 0.00 3.85
85 86 7.036154 TCTTATATTATGGACGGAGGGAGTA 57.964 40.000 0.00 0.00 0.00 2.59
86 87 7.117397 TCTTATATTATGGACGGAGGGAGTAG 58.883 42.308 0.00 0.00 0.00 2.57
87 88 3.614568 ATTATGGACGGAGGGAGTAGT 57.385 47.619 0.00 0.00 0.00 2.73
88 89 3.393426 TTATGGACGGAGGGAGTAGTT 57.607 47.619 0.00 0.00 0.00 2.24
89 90 2.249309 ATGGACGGAGGGAGTAGTTT 57.751 50.000 0.00 0.00 0.00 2.66
90 91 2.019807 TGGACGGAGGGAGTAGTTTT 57.980 50.000 0.00 0.00 0.00 2.43
91 92 2.332117 TGGACGGAGGGAGTAGTTTTT 58.668 47.619 0.00 0.00 0.00 1.94
92 93 3.509442 TGGACGGAGGGAGTAGTTTTTA 58.491 45.455 0.00 0.00 0.00 1.52
93 94 3.512724 TGGACGGAGGGAGTAGTTTTTAG 59.487 47.826 0.00 0.00 0.00 1.85
94 95 3.118847 GGACGGAGGGAGTAGTTTTTAGG 60.119 52.174 0.00 0.00 0.00 2.69
95 96 2.836372 ACGGAGGGAGTAGTTTTTAGGG 59.164 50.000 0.00 0.00 0.00 3.53
96 97 2.419713 CGGAGGGAGTAGTTTTTAGGGC 60.420 54.545 0.00 0.00 0.00 5.19
97 98 2.092538 GGAGGGAGTAGTTTTTAGGGCC 60.093 54.545 0.00 0.00 0.00 5.80
98 99 1.558294 AGGGAGTAGTTTTTAGGGCCG 59.442 52.381 0.00 0.00 0.00 6.13
99 100 1.407851 GGGAGTAGTTTTTAGGGCCGG 60.408 57.143 0.00 0.00 0.00 6.13
100 101 1.407851 GGAGTAGTTTTTAGGGCCGGG 60.408 57.143 2.18 0.00 0.00 5.73
101 102 1.556451 GAGTAGTTTTTAGGGCCGGGA 59.444 52.381 2.18 0.00 0.00 5.14
102 103 1.987368 AGTAGTTTTTAGGGCCGGGAA 59.013 47.619 2.18 0.00 0.00 3.97
103 104 2.376181 AGTAGTTTTTAGGGCCGGGAAA 59.624 45.455 2.18 0.00 0.00 3.13
104 105 2.615986 AGTTTTTAGGGCCGGGAAAT 57.384 45.000 2.18 0.00 0.00 2.17
105 106 3.743092 AGTTTTTAGGGCCGGGAAATA 57.257 42.857 2.18 0.00 0.00 1.40
106 107 4.050315 AGTTTTTAGGGCCGGGAAATAA 57.950 40.909 2.18 0.00 0.00 1.40
107 108 4.616553 AGTTTTTAGGGCCGGGAAATAAT 58.383 39.130 2.18 0.00 0.00 1.28
108 109 5.027460 AGTTTTTAGGGCCGGGAAATAATT 58.973 37.500 2.18 0.00 0.00 1.40
109 110 6.196434 AGTTTTTAGGGCCGGGAAATAATTA 58.804 36.000 2.18 0.00 0.00 1.40
110 111 6.668718 AGTTTTTAGGGCCGGGAAATAATTAA 59.331 34.615 2.18 0.00 0.00 1.40
111 112 7.180587 AGTTTTTAGGGCCGGGAAATAATTAAA 59.819 33.333 2.18 0.00 0.00 1.52
112 113 7.492077 TTTTAGGGCCGGGAAATAATTAAAA 57.508 32.000 2.18 0.00 0.00 1.52
113 114 7.492077 TTTAGGGCCGGGAAATAATTAAAAA 57.508 32.000 2.18 0.00 0.00 1.94
146 147 9.127277 TGTATGGAAATAGTTAATTAGTTGGCC 57.873 33.333 0.00 0.00 0.00 5.36
147 148 9.350951 GTATGGAAATAGTTAATTAGTTGGCCT 57.649 33.333 3.32 0.00 0.00 5.19
148 149 7.639113 TGGAAATAGTTAATTAGTTGGCCTG 57.361 36.000 3.32 0.00 0.00 4.85
149 150 7.179269 TGGAAATAGTTAATTAGTTGGCCTGT 58.821 34.615 3.32 0.00 0.00 4.00
150 151 7.122055 TGGAAATAGTTAATTAGTTGGCCTGTG 59.878 37.037 3.32 0.00 0.00 3.66
151 152 7.122204 GGAAATAGTTAATTAGTTGGCCTGTGT 59.878 37.037 3.32 0.00 0.00 3.72
152 153 9.169592 GAAATAGTTAATTAGTTGGCCTGTGTA 57.830 33.333 3.32 0.00 0.00 2.90
153 154 8.732746 AATAGTTAATTAGTTGGCCTGTGTAG 57.267 34.615 3.32 0.00 0.00 2.74
154 155 4.941873 AGTTAATTAGTTGGCCTGTGTAGC 59.058 41.667 3.32 0.00 0.00 3.58
160 161 2.045926 GGCCTGTGTAGCCCTGTG 60.046 66.667 0.00 0.00 45.16 3.66
161 162 2.592993 GGCCTGTGTAGCCCTGTGA 61.593 63.158 0.00 0.00 45.16 3.58
162 163 1.604378 GCCTGTGTAGCCCTGTGAT 59.396 57.895 0.00 0.00 0.00 3.06
163 164 0.745845 GCCTGTGTAGCCCTGTGATG 60.746 60.000 0.00 0.00 0.00 3.07
164 165 0.745845 CCTGTGTAGCCCTGTGATGC 60.746 60.000 0.00 0.00 0.00 3.91
165 166 0.036105 CTGTGTAGCCCTGTGATGCA 60.036 55.000 0.00 0.00 0.00 3.96
166 167 0.620030 TGTGTAGCCCTGTGATGCAT 59.380 50.000 0.00 0.00 0.00 3.96
167 168 1.303309 GTGTAGCCCTGTGATGCATC 58.697 55.000 20.14 20.14 0.00 3.91
168 169 0.911053 TGTAGCCCTGTGATGCATCA 59.089 50.000 25.42 25.42 0.00 3.07
169 170 1.491754 TGTAGCCCTGTGATGCATCAT 59.508 47.619 30.89 16.93 39.30 2.45
170 171 1.878088 GTAGCCCTGTGATGCATCATG 59.122 52.381 30.89 24.27 39.30 3.07
171 172 0.257905 AGCCCTGTGATGCATCATGT 59.742 50.000 30.89 10.48 39.30 3.21
172 173 1.108776 GCCCTGTGATGCATCATGTT 58.891 50.000 30.89 0.00 39.30 2.71
173 174 1.479323 GCCCTGTGATGCATCATGTTT 59.521 47.619 30.89 0.00 39.30 2.83
174 175 2.093869 GCCCTGTGATGCATCATGTTTT 60.094 45.455 30.89 0.00 39.30 2.43
175 176 3.130869 GCCCTGTGATGCATCATGTTTTA 59.869 43.478 30.89 12.96 39.30 1.52
176 177 4.202182 GCCCTGTGATGCATCATGTTTTAT 60.202 41.667 30.89 0.00 39.30 1.40
177 178 5.682990 GCCCTGTGATGCATCATGTTTTATT 60.683 40.000 30.89 0.00 39.30 1.40
178 179 6.342906 CCCTGTGATGCATCATGTTTTATTT 58.657 36.000 30.89 0.00 39.30 1.40
179 180 6.819649 CCCTGTGATGCATCATGTTTTATTTT 59.180 34.615 30.89 0.00 39.30 1.82
180 181 7.334921 CCCTGTGATGCATCATGTTTTATTTTT 59.665 33.333 30.89 0.00 39.30 1.94
199 200 4.998671 TTTTTGAGGAAACTGTGATGCA 57.001 36.364 0.00 0.00 44.43 3.96
200 201 5.534207 TTTTTGAGGAAACTGTGATGCAT 57.466 34.783 0.00 0.00 44.43 3.96
201 202 4.771590 TTTGAGGAAACTGTGATGCATC 57.228 40.909 20.14 20.14 44.43 3.91
202 203 3.421919 TGAGGAAACTGTGATGCATCA 57.578 42.857 25.42 25.42 44.43 3.07
203 204 3.340928 TGAGGAAACTGTGATGCATCAG 58.659 45.455 29.38 20.40 44.43 2.90
204 205 3.008266 TGAGGAAACTGTGATGCATCAGA 59.992 43.478 29.38 26.32 44.43 3.27
205 206 4.197750 GAGGAAACTGTGATGCATCAGAT 58.802 43.478 29.38 13.72 44.43 2.90
206 207 3.945921 AGGAAACTGTGATGCATCAGATG 59.054 43.478 29.38 22.01 41.13 2.90
207 208 3.943381 GGAAACTGTGATGCATCAGATGA 59.057 43.478 29.38 12.66 37.51 2.92
208 209 4.397103 GGAAACTGTGATGCATCAGATGAA 59.603 41.667 29.38 11.82 37.51 2.57
209 210 4.959596 AACTGTGATGCATCAGATGAAC 57.040 40.909 29.38 16.60 37.51 3.18
210 211 2.934553 ACTGTGATGCATCAGATGAACG 59.065 45.455 29.38 17.43 37.51 3.95
211 212 2.282407 TGTGATGCATCAGATGAACGG 58.718 47.619 29.38 0.00 37.51 4.44
212 213 1.003116 GTGATGCATCAGATGAACGGC 60.003 52.381 29.38 10.76 37.51 5.68
213 214 1.134310 TGATGCATCAGATGAACGGCT 60.134 47.619 25.42 0.00 32.11 5.52
214 215 1.263484 GATGCATCAGATGAACGGCTG 59.737 52.381 21.92 0.00 0.00 4.85
215 216 0.745486 TGCATCAGATGAACGGCTGG 60.745 55.000 15.12 0.00 33.05 4.85
216 217 1.442526 GCATCAGATGAACGGCTGGG 61.443 60.000 15.12 0.00 33.05 4.45
217 218 1.153086 ATCAGATGAACGGCTGGGC 60.153 57.895 0.00 0.00 33.05 5.36
218 219 1.630126 ATCAGATGAACGGCTGGGCT 61.630 55.000 0.00 0.00 33.05 5.19
219 220 2.110967 CAGATGAACGGCTGGGCTG 61.111 63.158 0.00 0.00 41.29 4.85
225 226 3.478780 ACGGCTGGGCTGTTAAGA 58.521 55.556 0.00 0.00 46.97 2.10
226 227 1.991230 ACGGCTGGGCTGTTAAGAT 59.009 52.632 0.00 0.00 46.97 2.40
227 228 0.392998 ACGGCTGGGCTGTTAAGATG 60.393 55.000 0.00 0.00 46.97 2.90
228 229 1.097547 CGGCTGGGCTGTTAAGATGG 61.098 60.000 0.00 0.00 0.00 3.51
229 230 0.255890 GGCTGGGCTGTTAAGATGGA 59.744 55.000 0.00 0.00 0.00 3.41
230 231 1.133668 GGCTGGGCTGTTAAGATGGAT 60.134 52.381 0.00 0.00 0.00 3.41
231 232 2.659428 GCTGGGCTGTTAAGATGGATT 58.341 47.619 0.00 0.00 0.00 3.01
232 233 3.026694 GCTGGGCTGTTAAGATGGATTT 58.973 45.455 0.00 0.00 0.00 2.17
233 234 3.448660 GCTGGGCTGTTAAGATGGATTTT 59.551 43.478 0.00 0.00 0.00 1.82
234 235 4.081476 GCTGGGCTGTTAAGATGGATTTTT 60.081 41.667 0.00 0.00 0.00 1.94
235 236 5.404466 TGGGCTGTTAAGATGGATTTTTG 57.596 39.130 0.00 0.00 0.00 2.44
236 237 4.222588 TGGGCTGTTAAGATGGATTTTTGG 59.777 41.667 0.00 0.00 0.00 3.28
237 238 4.183865 GGCTGTTAAGATGGATTTTTGGC 58.816 43.478 0.00 0.00 0.00 4.52
238 239 4.183865 GCTGTTAAGATGGATTTTTGGCC 58.816 43.478 0.00 0.00 0.00 5.36
239 240 4.322650 GCTGTTAAGATGGATTTTTGGCCA 60.323 41.667 0.00 0.00 38.78 5.36
240 241 5.404466 TGTTAAGATGGATTTTTGGCCAG 57.596 39.130 5.11 0.00 37.64 4.85
241 242 4.222588 TGTTAAGATGGATTTTTGGCCAGG 59.777 41.667 5.11 0.00 37.64 4.45
242 243 2.925966 AGATGGATTTTTGGCCAGGA 57.074 45.000 5.11 0.00 37.64 3.86
243 244 2.743553 AGATGGATTTTTGGCCAGGAG 58.256 47.619 5.11 0.00 37.64 3.69
244 245 2.043526 AGATGGATTTTTGGCCAGGAGT 59.956 45.455 5.11 0.00 37.64 3.85
245 246 1.631405 TGGATTTTTGGCCAGGAGTG 58.369 50.000 5.11 0.00 0.00 3.51
246 247 1.146774 TGGATTTTTGGCCAGGAGTGA 59.853 47.619 5.11 0.00 0.00 3.41
247 248 1.821136 GGATTTTTGGCCAGGAGTGAG 59.179 52.381 5.11 0.00 0.00 3.51
248 249 1.821136 GATTTTTGGCCAGGAGTGAGG 59.179 52.381 5.11 0.00 0.00 3.86
253 254 3.334054 GCCAGGAGTGAGGCCCTT 61.334 66.667 0.00 0.00 45.18 3.95
254 255 2.993853 CCAGGAGTGAGGCCCTTC 59.006 66.667 0.00 0.00 0.00 3.46
255 256 1.614824 CCAGGAGTGAGGCCCTTCT 60.615 63.158 0.00 0.00 0.00 2.85
256 257 1.601171 CAGGAGTGAGGCCCTTCTG 59.399 63.158 0.00 0.00 0.00 3.02
257 258 1.614824 AGGAGTGAGGCCCTTCTGG 60.615 63.158 0.00 0.00 37.09 3.86
268 269 2.986534 CCCTTCTGGCCCATATCAAT 57.013 50.000 0.00 0.00 0.00 2.57
269 270 2.522185 CCCTTCTGGCCCATATCAATG 58.478 52.381 0.00 0.00 0.00 2.82
270 271 1.891150 CCTTCTGGCCCATATCAATGC 59.109 52.381 0.00 0.00 0.00 3.56
271 272 2.589720 CTTCTGGCCCATATCAATGCA 58.410 47.619 0.00 0.00 0.00 3.96
272 273 1.985473 TCTGGCCCATATCAATGCAC 58.015 50.000 0.00 0.00 0.00 4.57
273 274 1.214923 TCTGGCCCATATCAATGCACA 59.785 47.619 0.00 0.00 0.00 4.57
274 275 1.611977 CTGGCCCATATCAATGCACAG 59.388 52.381 0.00 0.00 0.00 3.66
275 276 0.963962 GGCCCATATCAATGCACAGG 59.036 55.000 0.00 0.00 0.00 4.00
276 277 0.316204 GCCCATATCAATGCACAGGC 59.684 55.000 0.00 0.00 41.68 4.85
277 278 1.991121 CCCATATCAATGCACAGGCT 58.009 50.000 0.00 0.00 41.91 4.58
278 279 1.611977 CCCATATCAATGCACAGGCTG 59.388 52.381 14.16 14.16 41.91 4.85
279 280 1.611977 CCATATCAATGCACAGGCTGG 59.388 52.381 20.34 9.00 41.91 4.85
280 281 1.611977 CATATCAATGCACAGGCTGGG 59.388 52.381 20.34 17.27 41.91 4.45
286 287 3.204827 GCACAGGCTGGGCGTATG 61.205 66.667 27.99 11.17 36.87 2.39
287 288 2.584064 CACAGGCTGGGCGTATGA 59.416 61.111 20.34 0.00 0.00 2.15
288 289 1.522355 CACAGGCTGGGCGTATGAG 60.522 63.158 20.34 0.00 0.00 2.90
289 290 1.685765 ACAGGCTGGGCGTATGAGA 60.686 57.895 20.34 0.00 0.00 3.27
290 291 1.264749 ACAGGCTGGGCGTATGAGAA 61.265 55.000 20.34 0.00 0.00 2.87
291 292 0.531532 CAGGCTGGGCGTATGAGAAG 60.532 60.000 6.61 0.00 0.00 2.85
292 293 1.227674 GGCTGGGCGTATGAGAAGG 60.228 63.158 0.00 0.00 0.00 3.46
293 294 1.889573 GCTGGGCGTATGAGAAGGC 60.890 63.158 0.00 0.00 0.00 4.35
294 295 1.522092 CTGGGCGTATGAGAAGGCA 59.478 57.895 0.00 0.00 33.51 4.75
295 296 0.811616 CTGGGCGTATGAGAAGGCAC 60.812 60.000 0.00 0.00 34.28 5.01
296 297 1.883084 GGGCGTATGAGAAGGCACG 60.883 63.158 0.00 0.00 37.45 5.34
297 298 1.883084 GGCGTATGAGAAGGCACGG 60.883 63.158 0.00 0.00 35.04 4.94
298 299 2.526120 GCGTATGAGAAGGCACGGC 61.526 63.158 0.00 0.00 35.04 5.68
299 300 1.153647 CGTATGAGAAGGCACGGCA 60.154 57.895 0.00 0.00 0.00 5.69
300 301 1.421410 CGTATGAGAAGGCACGGCAC 61.421 60.000 0.00 0.00 0.00 5.01
301 302 0.108138 GTATGAGAAGGCACGGCACT 60.108 55.000 0.00 0.00 0.00 4.40
302 303 0.175760 TATGAGAAGGCACGGCACTC 59.824 55.000 9.59 9.59 0.00 3.51
303 304 1.548357 ATGAGAAGGCACGGCACTCT 61.548 55.000 14.81 7.02 0.00 3.24
304 305 1.739562 GAGAAGGCACGGCACTCTG 60.740 63.158 9.36 0.00 0.00 3.35
305 306 3.426568 GAAGGCACGGCACTCTGC 61.427 66.667 0.00 0.00 44.08 4.26
337 338 2.806237 CGGTAGAGGAGCCGGTTC 59.194 66.667 10.28 10.28 43.85 3.62
338 339 2.783288 CGGTAGAGGAGCCGGTTCC 61.783 68.421 28.69 28.69 43.85 3.62
765 778 2.354072 GCTTCCGGAGATCTCGCG 60.354 66.667 16.46 18.72 0.00 5.87
1042 1058 0.918983 CTGGAAGCTAATGGGTGGGA 59.081 55.000 0.00 0.00 0.00 4.37
1150 1166 1.694169 GAGAAGGGGGAGGATGGCA 60.694 63.158 0.00 0.00 0.00 4.92
1202 1218 5.022122 TGGATTATGCATTGAGGTTTGGAA 58.978 37.500 3.54 0.00 0.00 3.53
1266 1282 5.677319 TGGAAAAGTCGGTGAGATTCTAT 57.323 39.130 0.00 0.00 0.00 1.98
1279 1295 2.039084 AGATTCTATGGGGCGATGGAAC 59.961 50.000 0.00 0.00 0.00 3.62
1323 1339 2.575993 CAGACTCCACAGGGCGAG 59.424 66.667 0.00 0.00 0.00 5.03
1817 1847 1.351153 GCGAACCTGCTCTAGTTGTC 58.649 55.000 0.00 0.00 0.00 3.18
1879 1909 2.942376 TGCAGTCTTAGTTGGTGTGTTG 59.058 45.455 0.00 0.00 0.00 3.33
1967 1997 3.806625 AGCATGCTTTTGTGACTGTTT 57.193 38.095 16.30 0.00 0.00 2.83
1968 1998 3.709987 AGCATGCTTTTGTGACTGTTTC 58.290 40.909 16.30 0.00 0.00 2.78
1972 2002 1.202245 GCTTTTGTGACTGTTTCGCCA 60.202 47.619 0.00 0.00 33.31 5.69
2060 2093 5.049167 TGCTCAATTTTGGTGCTTAACTTG 58.951 37.500 9.36 0.00 0.00 3.16
2114 2147 0.409876 AGTCTGGCTCCTCTGGTACA 59.590 55.000 0.00 0.00 0.00 2.90
2233 2268 9.881529 GTTGTTATTACGGTGAAGTTTGATAAA 57.118 29.630 0.00 0.00 0.00 1.40
2314 2349 2.853235 TGGATGGAGATAGCAGCATG 57.147 50.000 0.00 0.00 40.87 4.06
2327 2362 1.021390 CAGCATGACGGTCCAGGTTC 61.021 60.000 5.55 0.00 39.69 3.62
2336 2371 1.732259 CGGTCCAGGTTCATTTCTTCG 59.268 52.381 0.00 0.00 0.00 3.79
2360 2395 6.581166 CGGTTAATCTTAGTTGAAGGTTTTGC 59.419 38.462 0.00 0.00 39.34 3.68
2374 2409 3.376218 TTTGCAGGCAAAAACGCAT 57.624 42.105 16.39 0.00 42.16 4.73
2393 2428 4.152045 CGCATTGAGATTTCTGAGATAGGC 59.848 45.833 0.00 0.00 0.00 3.93
2453 2503 4.770010 TGAACAGTTCTGGTTCAGGTTTTT 59.230 37.500 14.51 0.00 46.95 1.94
2457 2507 5.949952 ACAGTTCTGGTTCAGGTTTTTAGTT 59.050 36.000 4.82 0.00 31.51 2.24
2513 2571 3.788937 CATCCAAATTCCAAGGTCATGC 58.211 45.455 0.00 0.00 0.00 4.06
2550 2608 2.851798 GCTCTTGCTGAAGTCTGGG 58.148 57.895 0.00 0.00 36.03 4.45
2551 2609 0.036022 GCTCTTGCTGAAGTCTGGGT 59.964 55.000 0.00 0.00 36.03 4.51
2552 2610 1.544314 GCTCTTGCTGAAGTCTGGGTT 60.544 52.381 0.00 0.00 36.03 4.11
2553 2611 2.149578 CTCTTGCTGAAGTCTGGGTTG 58.850 52.381 0.00 0.00 0.00 3.77
2554 2612 1.202806 TCTTGCTGAAGTCTGGGTTGG 60.203 52.381 0.00 0.00 0.00 3.77
2555 2613 0.843309 TTGCTGAAGTCTGGGTTGGA 59.157 50.000 0.00 0.00 0.00 3.53
2556 2614 0.397941 TGCTGAAGTCTGGGTTGGAG 59.602 55.000 0.00 0.00 0.00 3.86
2557 2615 0.322008 GCTGAAGTCTGGGTTGGAGG 60.322 60.000 0.00 0.00 0.00 4.30
2558 2616 1.059913 CTGAAGTCTGGGTTGGAGGT 58.940 55.000 0.00 0.00 0.00 3.85
2559 2617 1.421646 CTGAAGTCTGGGTTGGAGGTT 59.578 52.381 0.00 0.00 0.00 3.50
2560 2618 1.850345 TGAAGTCTGGGTTGGAGGTTT 59.150 47.619 0.00 0.00 0.00 3.27
2561 2619 2.243736 TGAAGTCTGGGTTGGAGGTTTT 59.756 45.455 0.00 0.00 0.00 2.43
2562 2620 2.364972 AGTCTGGGTTGGAGGTTTTG 57.635 50.000 0.00 0.00 0.00 2.44
2563 2621 1.569072 AGTCTGGGTTGGAGGTTTTGT 59.431 47.619 0.00 0.00 0.00 2.83
2564 2622 1.681264 GTCTGGGTTGGAGGTTTTGTG 59.319 52.381 0.00 0.00 0.00 3.33
2565 2623 1.039856 CTGGGTTGGAGGTTTTGTGG 58.960 55.000 0.00 0.00 0.00 4.17
2566 2624 0.631753 TGGGTTGGAGGTTTTGTGGA 59.368 50.000 0.00 0.00 0.00 4.02
2567 2625 1.219213 TGGGTTGGAGGTTTTGTGGAT 59.781 47.619 0.00 0.00 0.00 3.41
2568 2626 2.447429 TGGGTTGGAGGTTTTGTGGATA 59.553 45.455 0.00 0.00 0.00 2.59
2569 2627 3.117093 TGGGTTGGAGGTTTTGTGGATAA 60.117 43.478 0.00 0.00 0.00 1.75
2570 2628 3.898741 GGGTTGGAGGTTTTGTGGATAAA 59.101 43.478 0.00 0.00 0.00 1.40
2571 2629 4.530553 GGGTTGGAGGTTTTGTGGATAAAT 59.469 41.667 0.00 0.00 0.00 1.40
2572 2630 5.717654 GGGTTGGAGGTTTTGTGGATAAATA 59.282 40.000 0.00 0.00 0.00 1.40
2573 2631 6.350696 GGGTTGGAGGTTTTGTGGATAAATAC 60.351 42.308 0.00 0.00 0.00 1.89
2574 2632 6.209788 GGTTGGAGGTTTTGTGGATAAATACA 59.790 38.462 0.00 0.00 0.00 2.29
2575 2633 6.827586 TGGAGGTTTTGTGGATAAATACAC 57.172 37.500 0.00 0.00 42.08 2.90
2576 2634 6.548321 TGGAGGTTTTGTGGATAAATACACT 58.452 36.000 6.85 0.00 42.23 3.55
2577 2635 6.432783 TGGAGGTTTTGTGGATAAATACACTG 59.567 38.462 6.85 0.00 42.23 3.66
2578 2636 6.657541 GGAGGTTTTGTGGATAAATACACTGA 59.342 38.462 6.85 0.00 42.23 3.41
2579 2637 7.339466 GGAGGTTTTGTGGATAAATACACTGAT 59.661 37.037 6.85 0.00 42.23 2.90
2580 2638 8.650143 AGGTTTTGTGGATAAATACACTGATT 57.350 30.769 6.85 0.00 42.23 2.57
2581 2639 9.088987 AGGTTTTGTGGATAAATACACTGATTT 57.911 29.630 6.85 0.00 42.23 2.17
2582 2640 9.353999 GGTTTTGTGGATAAATACACTGATTTC 57.646 33.333 6.85 0.00 42.23 2.17
2583 2641 9.061610 GTTTTGTGGATAAATACACTGATTTCG 57.938 33.333 6.85 0.00 42.23 3.46
2584 2642 6.358118 TGTGGATAAATACACTGATTTCGC 57.642 37.500 6.85 0.00 42.23 4.70
2585 2643 6.112734 TGTGGATAAATACACTGATTTCGCT 58.887 36.000 6.85 0.00 42.23 4.93
2586 2644 7.269316 TGTGGATAAATACACTGATTTCGCTA 58.731 34.615 6.85 0.00 42.23 4.26
2587 2645 7.931407 TGTGGATAAATACACTGATTTCGCTAT 59.069 33.333 6.85 0.00 42.23 2.97
2588 2646 8.436200 GTGGATAAATACACTGATTTCGCTATC 58.564 37.037 0.00 0.00 38.61 2.08
2589 2647 7.602644 TGGATAAATACACTGATTTCGCTATCC 59.397 37.037 0.00 0.00 34.02 2.59
2590 2648 7.819900 GGATAAATACACTGATTTCGCTATCCT 59.180 37.037 0.00 0.00 32.33 3.24
2591 2649 9.209175 GATAAATACACTGATTTCGCTATCCTT 57.791 33.333 0.00 0.00 31.51 3.36
2594 2652 9.561069 AAATACACTGATTTCGCTATCCTTATT 57.439 29.630 0.00 0.00 0.00 1.40
2595 2653 9.561069 AATACACTGATTTCGCTATCCTTATTT 57.439 29.630 0.00 0.00 0.00 1.40
2596 2654 7.251704 ACACTGATTTCGCTATCCTTATTTG 57.748 36.000 0.00 0.00 0.00 2.32
2597 2655 6.823689 ACACTGATTTCGCTATCCTTATTTGT 59.176 34.615 0.00 0.00 0.00 2.83
2598 2656 7.128331 CACTGATTTCGCTATCCTTATTTGTG 58.872 38.462 0.00 0.00 0.00 3.33
2599 2657 6.823689 ACTGATTTCGCTATCCTTATTTGTGT 59.176 34.615 0.00 0.00 0.00 3.72
2600 2658 7.985184 ACTGATTTCGCTATCCTTATTTGTGTA 59.015 33.333 0.00 0.00 0.00 2.90
2601 2659 8.138365 TGATTTCGCTATCCTTATTTGTGTAC 57.862 34.615 0.00 0.00 0.00 2.90
2602 2660 6.578020 TTTCGCTATCCTTATTTGTGTACG 57.422 37.500 0.00 0.00 0.00 3.67
2603 2661 4.046462 TCGCTATCCTTATTTGTGTACGC 58.954 43.478 0.00 0.00 0.00 4.42
2604 2662 3.799963 CGCTATCCTTATTTGTGTACGCA 59.200 43.478 4.65 4.65 0.00 5.24
2605 2663 4.447724 CGCTATCCTTATTTGTGTACGCAT 59.552 41.667 10.45 0.00 0.00 4.73
2606 2664 5.388475 CGCTATCCTTATTTGTGTACGCATC 60.388 44.000 10.45 0.00 0.00 3.91
2607 2665 5.107065 GCTATCCTTATTTGTGTACGCATCC 60.107 44.000 10.45 0.00 0.00 3.51
2608 2666 3.191669 TCCTTATTTGTGTACGCATCCG 58.808 45.455 10.45 0.00 41.14 4.18
2609 2667 2.286184 CCTTATTTGTGTACGCATCCGC 60.286 50.000 10.45 0.00 38.22 5.54
2610 2668 2.303163 TATTTGTGTACGCATCCGCT 57.697 45.000 10.45 0.00 38.22 5.52
2611 2669 0.726827 ATTTGTGTACGCATCCGCTG 59.273 50.000 10.45 0.00 38.22 5.18
2612 2670 0.319986 TTTGTGTACGCATCCGCTGA 60.320 50.000 10.45 0.00 38.22 4.26
2613 2671 0.319986 TTGTGTACGCATCCGCTGAA 60.320 50.000 10.45 0.00 38.22 3.02
2614 2672 0.319986 TGTGTACGCATCCGCTGAAA 60.320 50.000 4.65 0.00 38.22 2.69
2615 2673 1.006832 GTGTACGCATCCGCTGAAAT 58.993 50.000 0.39 0.00 38.22 2.17
2616 2674 1.006086 TGTACGCATCCGCTGAAATG 58.994 50.000 0.00 0.00 38.22 2.32
2617 2675 1.286501 GTACGCATCCGCTGAAATGA 58.713 50.000 0.00 0.00 38.22 2.57
2618 2676 1.867233 GTACGCATCCGCTGAAATGAT 59.133 47.619 0.00 0.00 38.22 2.45
2619 2677 0.659427 ACGCATCCGCTGAAATGATG 59.341 50.000 0.00 0.00 39.07 3.07
2620 2678 0.040692 CGCATCCGCTGAAATGATGG 60.041 55.000 0.00 0.00 37.07 3.51
2621 2679 0.318445 GCATCCGCTGAAATGATGGC 60.318 55.000 0.00 0.00 37.07 4.40
2622 2680 1.315690 CATCCGCTGAAATGATGGCT 58.684 50.000 0.00 0.00 33.79 4.75
2623 2681 1.001706 CATCCGCTGAAATGATGGCTG 60.002 52.381 0.00 0.00 33.79 4.85
2624 2682 0.035152 TCCGCTGAAATGATGGCTGT 60.035 50.000 0.00 0.00 0.00 4.40
2625 2683 0.099968 CCGCTGAAATGATGGCTGTG 59.900 55.000 0.00 0.00 0.00 3.66
2626 2684 0.524816 CGCTGAAATGATGGCTGTGC 60.525 55.000 0.00 0.00 0.00 4.57
2627 2685 0.528924 GCTGAAATGATGGCTGTGCA 59.471 50.000 0.00 0.00 0.00 4.57
2628 2686 1.734707 GCTGAAATGATGGCTGTGCAC 60.735 52.381 10.75 10.75 0.00 4.57
2629 2687 1.542472 CTGAAATGATGGCTGTGCACA 59.458 47.619 20.37 20.37 0.00 4.57
2630 2688 2.165641 CTGAAATGATGGCTGTGCACAT 59.834 45.455 22.00 4.91 0.00 3.21
2631 2689 2.164827 TGAAATGATGGCTGTGCACATC 59.835 45.455 22.00 16.83 42.86 3.06
2632 2690 2.139323 AATGATGGCTGTGCACATCT 57.861 45.000 22.00 5.11 42.96 2.90
2633 2691 1.389555 ATGATGGCTGTGCACATCTG 58.610 50.000 22.00 10.29 42.96 2.90
2634 2692 0.325602 TGATGGCTGTGCACATCTGA 59.674 50.000 22.00 7.68 42.96 3.27
2635 2693 1.064979 TGATGGCTGTGCACATCTGAT 60.065 47.619 22.00 12.23 42.96 2.90
2636 2694 1.333931 GATGGCTGTGCACATCTGATG 59.666 52.381 22.00 15.83 40.17 3.07
2637 2695 1.310216 TGGCTGTGCACATCTGATGC 61.310 55.000 22.00 18.43 43.68 3.91
2638 2696 1.030488 GGCTGTGCACATCTGATGCT 61.030 55.000 22.00 2.56 43.77 3.79
2639 2697 0.377554 GCTGTGCACATCTGATGCTC 59.622 55.000 22.00 9.70 43.77 4.26
2640 2698 1.734163 CTGTGCACATCTGATGCTCA 58.266 50.000 22.00 12.04 43.77 4.26
2641 2699 2.289565 CTGTGCACATCTGATGCTCAT 58.710 47.619 22.00 0.00 43.42 2.90
2642 2700 2.285977 TGTGCACATCTGATGCTCATC 58.714 47.619 17.42 3.03 43.77 2.92
2643 2701 2.285977 GTGCACATCTGATGCTCATCA 58.714 47.619 17.24 11.57 44.83 3.07
2644 2702 2.681344 GTGCACATCTGATGCTCATCAA 59.319 45.455 17.24 5.84 46.10 2.57
2645 2703 2.943033 TGCACATCTGATGCTCATCAAG 59.057 45.455 17.24 8.80 46.10 3.02
2646 2704 2.290916 GCACATCTGATGCTCATCAAGG 59.709 50.000 17.24 8.75 46.10 3.61
2647 2705 2.290916 CACATCTGATGCTCATCAAGGC 59.709 50.000 17.24 0.00 46.10 4.35
2648 2706 1.531578 CATCTGATGCTCATCAAGGCG 59.468 52.381 12.92 3.00 46.10 5.52
2649 2707 0.812811 TCTGATGCTCATCAAGGCGC 60.813 55.000 12.92 0.00 46.10 6.53
2650 2708 1.078285 TGATGCTCATCAAGGCGCA 60.078 52.632 10.83 0.00 44.14 6.09
2651 2709 0.677414 TGATGCTCATCAAGGCGCAA 60.677 50.000 10.83 0.00 44.14 4.85
2652 2710 0.666913 GATGCTCATCAAGGCGCAAT 59.333 50.000 10.83 0.00 37.74 3.56
2653 2711 1.875514 GATGCTCATCAAGGCGCAATA 59.124 47.619 10.83 0.00 37.74 1.90
2654 2712 1.971481 TGCTCATCAAGGCGCAATAT 58.029 45.000 10.83 0.00 0.00 1.28
2655 2713 2.300433 TGCTCATCAAGGCGCAATATT 58.700 42.857 10.83 0.00 0.00 1.28
2656 2714 2.689471 TGCTCATCAAGGCGCAATATTT 59.311 40.909 10.83 0.00 0.00 1.40
2657 2715 3.047796 GCTCATCAAGGCGCAATATTTG 58.952 45.455 10.83 5.63 0.00 2.32
2658 2716 3.489738 GCTCATCAAGGCGCAATATTTGT 60.490 43.478 10.83 0.00 0.00 2.83
2659 2717 4.675510 CTCATCAAGGCGCAATATTTGTT 58.324 39.130 10.83 0.00 0.00 2.83
2660 2718 5.733091 GCTCATCAAGGCGCAATATTTGTTA 60.733 40.000 10.83 0.00 0.00 2.41
2661 2719 6.201226 TCATCAAGGCGCAATATTTGTTAA 57.799 33.333 10.83 0.00 0.00 2.01
2662 2720 6.625362 TCATCAAGGCGCAATATTTGTTAAA 58.375 32.000 10.83 0.00 0.00 1.52
2663 2721 7.093354 TCATCAAGGCGCAATATTTGTTAAAA 58.907 30.769 10.83 0.00 0.00 1.52
2664 2722 7.763528 TCATCAAGGCGCAATATTTGTTAAAAT 59.236 29.630 10.83 0.00 39.38 1.82
2665 2723 7.897575 TCAAGGCGCAATATTTGTTAAAATT 57.102 28.000 10.83 0.00 37.23 1.82
2666 2724 8.316640 TCAAGGCGCAATATTTGTTAAAATTT 57.683 26.923 10.83 0.00 37.23 1.82
2667 2725 8.439286 TCAAGGCGCAATATTTGTTAAAATTTC 58.561 29.630 10.83 0.00 37.23 2.17
2668 2726 8.442384 CAAGGCGCAATATTTGTTAAAATTTCT 58.558 29.630 10.83 0.00 37.23 2.52
2669 2727 7.962917 AGGCGCAATATTTGTTAAAATTTCTG 58.037 30.769 10.83 0.00 37.23 3.02
2670 2728 6.682441 GGCGCAATATTTGTTAAAATTTCTGC 59.318 34.615 10.83 0.00 37.23 4.26
2671 2729 7.412891 GGCGCAATATTTGTTAAAATTTCTGCT 60.413 33.333 10.83 0.00 37.23 4.24
2672 2730 7.423314 GCGCAATATTTGTTAAAATTTCTGCTG 59.577 33.333 0.30 0.00 37.23 4.41
2673 2731 8.646356 CGCAATATTTGTTAAAATTTCTGCTGA 58.354 29.630 0.00 0.00 37.23 4.26
2680 2738 7.636259 TGTTAAAATTTCTGCTGATTTTCCG 57.364 32.000 7.84 0.00 36.92 4.30
2681 2739 7.429633 TGTTAAAATTTCTGCTGATTTTCCGA 58.570 30.769 7.84 0.00 36.92 4.55
2682 2740 8.087750 TGTTAAAATTTCTGCTGATTTTCCGAT 58.912 29.630 7.84 0.00 36.92 4.18
2683 2741 6.956299 AAAATTTCTGCTGATTTTCCGATG 57.044 33.333 0.00 0.00 31.69 3.84
2684 2742 5.902613 AATTTCTGCTGATTTTCCGATGA 57.097 34.783 0.00 0.00 0.00 2.92
2685 2743 4.685169 TTTCTGCTGATTTTCCGATGAC 57.315 40.909 0.00 0.00 0.00 3.06
2686 2744 3.333029 TCTGCTGATTTTCCGATGACA 57.667 42.857 0.00 0.00 0.00 3.58
2687 2745 3.264947 TCTGCTGATTTTCCGATGACAG 58.735 45.455 0.00 0.00 0.00 3.51
2688 2746 2.353889 CTGCTGATTTTCCGATGACAGG 59.646 50.000 0.00 0.00 0.00 4.00
2689 2747 2.290260 TGCTGATTTTCCGATGACAGGT 60.290 45.455 0.00 0.00 0.00 4.00
2690 2748 2.096496 GCTGATTTTCCGATGACAGGTG 59.904 50.000 0.00 0.00 0.00 4.00
2691 2749 2.083774 TGATTTTCCGATGACAGGTGC 58.916 47.619 0.00 0.00 0.00 5.01
2692 2750 1.401905 GATTTTCCGATGACAGGTGCC 59.598 52.381 0.00 0.00 0.00 5.01
2693 2751 0.109532 TTTTCCGATGACAGGTGCCA 59.890 50.000 0.00 0.00 0.00 4.92
2694 2752 0.327924 TTTCCGATGACAGGTGCCAT 59.672 50.000 0.00 0.00 0.00 4.40
2695 2753 0.327924 TTCCGATGACAGGTGCCATT 59.672 50.000 0.00 0.00 0.00 3.16
2696 2754 0.327924 TCCGATGACAGGTGCCATTT 59.672 50.000 0.00 0.00 0.00 2.32
2697 2755 0.734889 CCGATGACAGGTGCCATTTC 59.265 55.000 0.00 0.00 0.00 2.17
2698 2756 1.679944 CCGATGACAGGTGCCATTTCT 60.680 52.381 0.00 0.00 0.00 2.52
2699 2757 1.667724 CGATGACAGGTGCCATTTCTC 59.332 52.381 0.00 0.00 0.00 2.87
2700 2758 2.019984 GATGACAGGTGCCATTTCTCC 58.980 52.381 0.00 0.00 0.00 3.71
2701 2759 0.038166 TGACAGGTGCCATTTCTCCC 59.962 55.000 0.00 0.00 0.00 4.30
2702 2760 0.329596 GACAGGTGCCATTTCTCCCT 59.670 55.000 0.00 0.00 0.00 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.793505 ATATTTTGAGACGGAGGAAGTAGT 57.206 37.500 0.00 0.00 0.00 2.73
1 2 8.630917 TCTTATATTTTGAGACGGAGGAAGTAG 58.369 37.037 0.00 0.00 0.00 2.57
2 3 8.529424 TCTTATATTTTGAGACGGAGGAAGTA 57.471 34.615 0.00 0.00 0.00 2.24
3 4 7.419711 TCTTATATTTTGAGACGGAGGAAGT 57.580 36.000 0.00 0.00 0.00 3.01
4 5 7.764443 TGTTCTTATATTTTGAGACGGAGGAAG 59.236 37.037 0.00 0.00 0.00 3.46
5 6 7.617225 TGTTCTTATATTTTGAGACGGAGGAA 58.383 34.615 0.00 0.00 0.00 3.36
6 7 7.177832 TGTTCTTATATTTTGAGACGGAGGA 57.822 36.000 0.00 0.00 0.00 3.71
7 8 8.438676 AATGTTCTTATATTTTGAGACGGAGG 57.561 34.615 0.00 0.00 0.00 4.30
51 52 8.605746 CCGTCCATAATATAAGAACGTTTTTGA 58.394 33.333 13.87 2.81 0.00 2.69
52 53 8.605746 TCCGTCCATAATATAAGAACGTTTTTG 58.394 33.333 13.87 0.00 0.00 2.44
53 54 8.721019 TCCGTCCATAATATAAGAACGTTTTT 57.279 30.769 9.22 9.22 0.00 1.94
54 55 7.440255 CCTCCGTCCATAATATAAGAACGTTTT 59.560 37.037 0.46 0.00 0.00 2.43
55 56 6.927381 CCTCCGTCCATAATATAAGAACGTTT 59.073 38.462 0.46 0.00 0.00 3.60
56 57 6.453092 CCTCCGTCCATAATATAAGAACGTT 58.547 40.000 0.00 0.00 0.00 3.99
57 58 5.047519 CCCTCCGTCCATAATATAAGAACGT 60.048 44.000 0.00 0.00 0.00 3.99
58 59 5.184479 TCCCTCCGTCCATAATATAAGAACG 59.816 44.000 0.00 0.00 0.00 3.95
59 60 6.210984 ACTCCCTCCGTCCATAATATAAGAAC 59.789 42.308 0.00 0.00 0.00 3.01
60 61 6.320518 ACTCCCTCCGTCCATAATATAAGAA 58.679 40.000 0.00 0.00 0.00 2.52
61 62 5.900437 ACTCCCTCCGTCCATAATATAAGA 58.100 41.667 0.00 0.00 0.00 2.10
62 63 6.890814 ACTACTCCCTCCGTCCATAATATAAG 59.109 42.308 0.00 0.00 0.00 1.73
63 64 6.797707 ACTACTCCCTCCGTCCATAATATAA 58.202 40.000 0.00 0.00 0.00 0.98
64 65 6.398655 ACTACTCCCTCCGTCCATAATATA 57.601 41.667 0.00 0.00 0.00 0.86
65 66 5.272405 ACTACTCCCTCCGTCCATAATAT 57.728 43.478 0.00 0.00 0.00 1.28
66 67 4.736611 ACTACTCCCTCCGTCCATAATA 57.263 45.455 0.00 0.00 0.00 0.98
67 68 3.614568 ACTACTCCCTCCGTCCATAAT 57.385 47.619 0.00 0.00 0.00 1.28
68 69 3.393426 AACTACTCCCTCCGTCCATAA 57.607 47.619 0.00 0.00 0.00 1.90
69 70 3.393426 AAACTACTCCCTCCGTCCATA 57.607 47.619 0.00 0.00 0.00 2.74
70 71 2.249309 AAACTACTCCCTCCGTCCAT 57.751 50.000 0.00 0.00 0.00 3.41
71 72 2.019807 AAAACTACTCCCTCCGTCCA 57.980 50.000 0.00 0.00 0.00 4.02
72 73 3.118847 CCTAAAAACTACTCCCTCCGTCC 60.119 52.174 0.00 0.00 0.00 4.79
73 74 3.118847 CCCTAAAAACTACTCCCTCCGTC 60.119 52.174 0.00 0.00 0.00 4.79
74 75 2.836372 CCCTAAAAACTACTCCCTCCGT 59.164 50.000 0.00 0.00 0.00 4.69
75 76 2.419713 GCCCTAAAAACTACTCCCTCCG 60.420 54.545 0.00 0.00 0.00 4.63
76 77 2.092538 GGCCCTAAAAACTACTCCCTCC 60.093 54.545 0.00 0.00 0.00 4.30
77 78 2.419713 CGGCCCTAAAAACTACTCCCTC 60.420 54.545 0.00 0.00 0.00 4.30
78 79 1.558294 CGGCCCTAAAAACTACTCCCT 59.442 52.381 0.00 0.00 0.00 4.20
79 80 1.407851 CCGGCCCTAAAAACTACTCCC 60.408 57.143 0.00 0.00 0.00 4.30
80 81 1.407851 CCCGGCCCTAAAAACTACTCC 60.408 57.143 0.00 0.00 0.00 3.85
81 82 1.556451 TCCCGGCCCTAAAAACTACTC 59.444 52.381 0.00 0.00 0.00 2.59
82 83 1.660242 TCCCGGCCCTAAAAACTACT 58.340 50.000 0.00 0.00 0.00 2.57
83 84 2.495155 TTCCCGGCCCTAAAAACTAC 57.505 50.000 0.00 0.00 0.00 2.73
84 85 3.743092 ATTTCCCGGCCCTAAAAACTA 57.257 42.857 0.00 0.00 0.00 2.24
85 86 2.615986 ATTTCCCGGCCCTAAAAACT 57.384 45.000 0.00 0.00 0.00 2.66
86 87 5.347620 AATTATTTCCCGGCCCTAAAAAC 57.652 39.130 0.00 0.00 0.00 2.43
87 88 7.492077 TTTAATTATTTCCCGGCCCTAAAAA 57.508 32.000 0.00 0.00 0.00 1.94
88 89 7.492077 TTTTAATTATTTCCCGGCCCTAAAA 57.508 32.000 0.00 0.00 0.00 1.52
89 90 7.492077 TTTTTAATTATTTCCCGGCCCTAAA 57.508 32.000 0.00 0.00 0.00 1.85
120 121 9.127277 GGCCAACTAATTAACTATTTCCATACA 57.873 33.333 0.00 0.00 0.00 2.29
121 122 9.350951 AGGCCAACTAATTAACTATTTCCATAC 57.649 33.333 5.01 0.00 0.00 2.39
122 123 9.349713 CAGGCCAACTAATTAACTATTTCCATA 57.650 33.333 5.01 0.00 0.00 2.74
123 124 7.839200 ACAGGCCAACTAATTAACTATTTCCAT 59.161 33.333 5.01 0.00 0.00 3.41
124 125 7.122055 CACAGGCCAACTAATTAACTATTTCCA 59.878 37.037 5.01 0.00 0.00 3.53
125 126 7.122204 ACACAGGCCAACTAATTAACTATTTCC 59.878 37.037 5.01 0.00 0.00 3.13
126 127 8.051901 ACACAGGCCAACTAATTAACTATTTC 57.948 34.615 5.01 0.00 0.00 2.17
127 128 9.174166 CTACACAGGCCAACTAATTAACTATTT 57.826 33.333 5.01 0.00 0.00 1.40
128 129 7.282450 GCTACACAGGCCAACTAATTAACTATT 59.718 37.037 5.01 0.00 0.00 1.73
129 130 6.766467 GCTACACAGGCCAACTAATTAACTAT 59.234 38.462 5.01 0.00 0.00 2.12
130 131 6.110707 GCTACACAGGCCAACTAATTAACTA 58.889 40.000 5.01 0.00 0.00 2.24
131 132 4.941873 GCTACACAGGCCAACTAATTAACT 59.058 41.667 5.01 0.00 0.00 2.24
132 133 5.231265 GCTACACAGGCCAACTAATTAAC 57.769 43.478 5.01 0.00 0.00 2.01
144 145 0.745845 CATCACAGGGCTACACAGGC 60.746 60.000 0.00 0.00 46.47 4.85
145 146 0.745845 GCATCACAGGGCTACACAGG 60.746 60.000 0.00 0.00 0.00 4.00
146 147 0.036105 TGCATCACAGGGCTACACAG 60.036 55.000 0.00 0.00 0.00 3.66
147 148 0.620030 ATGCATCACAGGGCTACACA 59.380 50.000 0.00 0.00 0.00 3.72
148 149 1.303309 GATGCATCACAGGGCTACAC 58.697 55.000 21.92 0.00 0.00 2.90
149 150 0.911053 TGATGCATCACAGGGCTACA 59.089 50.000 25.42 0.00 0.00 2.74
150 151 1.878088 CATGATGCATCACAGGGCTAC 59.122 52.381 30.92 0.00 40.03 3.58
151 152 1.491754 ACATGATGCATCACAGGGCTA 59.508 47.619 30.92 6.54 40.03 3.93
152 153 0.257905 ACATGATGCATCACAGGGCT 59.742 50.000 30.92 11.96 40.03 5.19
153 154 1.108776 AACATGATGCATCACAGGGC 58.891 50.000 30.92 1.57 40.03 5.19
154 155 3.880047 AAAACATGATGCATCACAGGG 57.120 42.857 30.92 21.26 40.03 4.45
155 156 7.837202 AAAATAAAACATGATGCATCACAGG 57.163 32.000 30.92 23.55 40.03 4.00
178 179 4.998671 TGCATCACAGTTTCCTCAAAAA 57.001 36.364 0.00 0.00 0.00 1.94
179 180 4.583907 TGATGCATCACAGTTTCCTCAAAA 59.416 37.500 25.42 0.00 0.00 2.44
180 181 4.143543 TGATGCATCACAGTTTCCTCAAA 58.856 39.130 25.42 0.00 0.00 2.69
181 182 3.753815 TGATGCATCACAGTTTCCTCAA 58.246 40.909 25.42 0.00 0.00 3.02
182 183 3.008266 TCTGATGCATCACAGTTTCCTCA 59.992 43.478 25.42 1.49 35.84 3.86
183 184 3.603532 TCTGATGCATCACAGTTTCCTC 58.396 45.455 25.42 0.00 35.84 3.71
184 185 3.708403 TCTGATGCATCACAGTTTCCT 57.292 42.857 25.42 0.00 35.84 3.36
185 186 3.943381 TCATCTGATGCATCACAGTTTCC 59.057 43.478 25.42 0.00 35.84 3.13
186 187 5.330295 GTTCATCTGATGCATCACAGTTTC 58.670 41.667 25.42 11.01 35.84 2.78
187 188 4.142752 CGTTCATCTGATGCATCACAGTTT 60.143 41.667 25.42 5.86 35.84 2.66
188 189 3.373130 CGTTCATCTGATGCATCACAGTT 59.627 43.478 25.42 9.25 35.84 3.16
189 190 2.934553 CGTTCATCTGATGCATCACAGT 59.065 45.455 25.42 11.16 35.84 3.55
190 191 2.287103 CCGTTCATCTGATGCATCACAG 59.713 50.000 25.42 16.63 35.72 3.66
191 192 2.282407 CCGTTCATCTGATGCATCACA 58.718 47.619 25.42 16.42 32.50 3.58
192 193 1.003116 GCCGTTCATCTGATGCATCAC 60.003 52.381 25.42 13.34 32.50 3.06
193 194 1.134310 AGCCGTTCATCTGATGCATCA 60.134 47.619 27.10 27.10 35.16 3.07
194 195 1.263484 CAGCCGTTCATCTGATGCATC 59.737 52.381 20.14 20.14 32.26 3.91
195 196 1.306148 CAGCCGTTCATCTGATGCAT 58.694 50.000 12.78 0.00 32.26 3.96
196 197 0.745486 CCAGCCGTTCATCTGATGCA 60.745 55.000 12.78 0.00 32.26 3.96
197 198 1.442526 CCCAGCCGTTCATCTGATGC 61.443 60.000 12.78 0.84 32.26 3.91
198 199 1.442526 GCCCAGCCGTTCATCTGATG 61.443 60.000 11.42 11.42 32.26 3.07
199 200 1.153086 GCCCAGCCGTTCATCTGAT 60.153 57.895 0.00 0.00 32.26 2.90
200 201 2.268920 GCCCAGCCGTTCATCTGA 59.731 61.111 0.00 0.00 32.26 3.27
201 202 2.110967 CAGCCCAGCCGTTCATCTG 61.111 63.158 0.00 0.00 0.00 2.90
202 203 2.129555 AACAGCCCAGCCGTTCATCT 62.130 55.000 0.00 0.00 0.00 2.90
203 204 0.392461 TAACAGCCCAGCCGTTCATC 60.392 55.000 0.00 0.00 0.00 2.92
204 205 0.037590 TTAACAGCCCAGCCGTTCAT 59.962 50.000 0.00 0.00 0.00 2.57
205 206 0.605319 CTTAACAGCCCAGCCGTTCA 60.605 55.000 0.00 0.00 0.00 3.18
206 207 0.321298 TCTTAACAGCCCAGCCGTTC 60.321 55.000 0.00 0.00 0.00 3.95
207 208 0.328258 ATCTTAACAGCCCAGCCGTT 59.672 50.000 0.00 0.00 0.00 4.44
208 209 0.392998 CATCTTAACAGCCCAGCCGT 60.393 55.000 0.00 0.00 0.00 5.68
209 210 1.097547 CCATCTTAACAGCCCAGCCG 61.098 60.000 0.00 0.00 0.00 5.52
210 211 0.255890 TCCATCTTAACAGCCCAGCC 59.744 55.000 0.00 0.00 0.00 4.85
211 212 2.355010 ATCCATCTTAACAGCCCAGC 57.645 50.000 0.00 0.00 0.00 4.85
212 213 5.413499 CAAAAATCCATCTTAACAGCCCAG 58.587 41.667 0.00 0.00 0.00 4.45
213 214 4.222588 CCAAAAATCCATCTTAACAGCCCA 59.777 41.667 0.00 0.00 0.00 5.36
214 215 4.758688 CCAAAAATCCATCTTAACAGCCC 58.241 43.478 0.00 0.00 0.00 5.19
215 216 4.183865 GCCAAAAATCCATCTTAACAGCC 58.816 43.478 0.00 0.00 0.00 4.85
216 217 4.183865 GGCCAAAAATCCATCTTAACAGC 58.816 43.478 0.00 0.00 0.00 4.40
217 218 5.404466 TGGCCAAAAATCCATCTTAACAG 57.596 39.130 0.61 0.00 0.00 3.16
218 219 4.222588 CCTGGCCAAAAATCCATCTTAACA 59.777 41.667 7.01 0.00 0.00 2.41
219 220 4.466015 TCCTGGCCAAAAATCCATCTTAAC 59.534 41.667 7.01 0.00 0.00 2.01
220 221 4.682563 TCCTGGCCAAAAATCCATCTTAA 58.317 39.130 7.01 0.00 0.00 1.85
221 222 4.264352 ACTCCTGGCCAAAAATCCATCTTA 60.264 41.667 7.01 0.00 0.00 2.10
222 223 3.102204 CTCCTGGCCAAAAATCCATCTT 58.898 45.455 7.01 0.00 0.00 2.40
223 224 2.043526 ACTCCTGGCCAAAAATCCATCT 59.956 45.455 7.01 0.00 0.00 2.90
224 225 2.167075 CACTCCTGGCCAAAAATCCATC 59.833 50.000 7.01 0.00 0.00 3.51
225 226 2.181975 CACTCCTGGCCAAAAATCCAT 58.818 47.619 7.01 0.00 0.00 3.41
226 227 1.146774 TCACTCCTGGCCAAAAATCCA 59.853 47.619 7.01 0.00 0.00 3.41
227 228 1.821136 CTCACTCCTGGCCAAAAATCC 59.179 52.381 7.01 0.00 0.00 3.01
228 229 1.821136 CCTCACTCCTGGCCAAAAATC 59.179 52.381 7.01 0.00 0.00 2.17
229 230 1.928868 CCTCACTCCTGGCCAAAAAT 58.071 50.000 7.01 0.00 0.00 1.82
230 231 0.827507 GCCTCACTCCTGGCCAAAAA 60.828 55.000 7.01 0.00 43.11 1.94
231 232 1.228552 GCCTCACTCCTGGCCAAAA 60.229 57.895 7.01 0.00 43.11 2.44
232 233 2.436109 GCCTCACTCCTGGCCAAA 59.564 61.111 7.01 0.00 43.11 3.28
237 238 1.614824 AGAAGGGCCTCACTCCTGG 60.615 63.158 6.46 0.00 32.95 4.45
238 239 1.601171 CAGAAGGGCCTCACTCCTG 59.399 63.158 6.46 6.00 32.95 3.86
239 240 1.614824 CCAGAAGGGCCTCACTCCT 60.615 63.158 6.46 0.00 34.29 3.69
240 241 2.993853 CCAGAAGGGCCTCACTCC 59.006 66.667 6.46 0.00 0.00 3.85
249 250 2.522185 CATTGATATGGGCCAGAAGGG 58.478 52.381 13.78 0.00 40.85 3.95
250 251 1.891150 GCATTGATATGGGCCAGAAGG 59.109 52.381 13.78 5.06 33.16 3.46
251 252 2.295349 GTGCATTGATATGGGCCAGAAG 59.705 50.000 13.78 0.00 32.15 2.85
252 253 2.309613 GTGCATTGATATGGGCCAGAA 58.690 47.619 13.78 2.48 32.15 3.02
253 254 1.214923 TGTGCATTGATATGGGCCAGA 59.785 47.619 13.78 8.24 32.15 3.86
254 255 1.611977 CTGTGCATTGATATGGGCCAG 59.388 52.381 13.78 0.00 32.15 4.85
255 256 1.694844 CTGTGCATTGATATGGGCCA 58.305 50.000 9.61 9.61 32.15 5.36
256 257 0.963962 CCTGTGCATTGATATGGGCC 59.036 55.000 0.00 0.00 32.15 5.80
257 258 0.316204 GCCTGTGCATTGATATGGGC 59.684 55.000 0.00 0.00 37.47 5.36
258 259 1.611977 CAGCCTGTGCATTGATATGGG 59.388 52.381 0.00 0.00 41.13 4.00
259 260 1.611977 CCAGCCTGTGCATTGATATGG 59.388 52.381 0.00 0.00 41.13 2.74
260 261 1.611977 CCCAGCCTGTGCATTGATATG 59.388 52.381 0.00 0.00 41.13 1.78
261 262 1.991121 CCCAGCCTGTGCATTGATAT 58.009 50.000 0.00 0.00 41.13 1.63
262 263 0.752743 GCCCAGCCTGTGCATTGATA 60.753 55.000 0.00 0.00 41.13 2.15
263 264 2.056223 GCCCAGCCTGTGCATTGAT 61.056 57.895 0.00 0.00 41.13 2.57
264 265 2.677524 GCCCAGCCTGTGCATTGA 60.678 61.111 0.00 0.00 41.13 2.57
265 266 4.124351 CGCCCAGCCTGTGCATTG 62.124 66.667 0.00 0.00 41.13 2.82
266 267 2.556840 ATACGCCCAGCCTGTGCATT 62.557 55.000 0.00 0.00 41.13 3.56
267 268 3.047807 ATACGCCCAGCCTGTGCAT 62.048 57.895 0.00 0.00 41.13 3.96
268 269 3.716195 ATACGCCCAGCCTGTGCA 61.716 61.111 0.00 0.00 41.13 4.57
269 270 3.204827 CATACGCCCAGCCTGTGC 61.205 66.667 0.00 0.00 37.95 4.57
270 271 1.522355 CTCATACGCCCAGCCTGTG 60.522 63.158 0.00 0.00 0.00 3.66
271 272 1.264749 TTCTCATACGCCCAGCCTGT 61.265 55.000 0.00 0.00 0.00 4.00
272 273 0.531532 CTTCTCATACGCCCAGCCTG 60.532 60.000 0.00 0.00 0.00 4.85
273 274 1.690219 CCTTCTCATACGCCCAGCCT 61.690 60.000 0.00 0.00 0.00 4.58
274 275 1.227674 CCTTCTCATACGCCCAGCC 60.228 63.158 0.00 0.00 0.00 4.85
275 276 1.889573 GCCTTCTCATACGCCCAGC 60.890 63.158 0.00 0.00 0.00 4.85
276 277 0.811616 GTGCCTTCTCATACGCCCAG 60.812 60.000 0.00 0.00 0.00 4.45
277 278 1.220749 GTGCCTTCTCATACGCCCA 59.779 57.895 0.00 0.00 0.00 5.36
278 279 1.883084 CGTGCCTTCTCATACGCCC 60.883 63.158 0.00 0.00 0.00 6.13
279 280 1.883084 CCGTGCCTTCTCATACGCC 60.883 63.158 0.00 0.00 35.39 5.68
280 281 2.526120 GCCGTGCCTTCTCATACGC 61.526 63.158 0.00 0.00 35.39 4.42
281 282 1.153647 TGCCGTGCCTTCTCATACG 60.154 57.895 0.00 0.00 36.39 3.06
282 283 0.108138 AGTGCCGTGCCTTCTCATAC 60.108 55.000 0.00 0.00 0.00 2.39
283 284 0.175760 GAGTGCCGTGCCTTCTCATA 59.824 55.000 0.00 0.00 0.00 2.15
284 285 1.078848 GAGTGCCGTGCCTTCTCAT 60.079 57.895 0.00 0.00 0.00 2.90
285 286 2.210013 AGAGTGCCGTGCCTTCTCA 61.210 57.895 11.72 0.00 0.00 3.27
286 287 1.739562 CAGAGTGCCGTGCCTTCTC 60.740 63.158 0.00 0.00 0.00 2.87
287 288 2.345244 CAGAGTGCCGTGCCTTCT 59.655 61.111 0.00 0.00 0.00 2.85
288 289 3.426568 GCAGAGTGCCGTGCCTTC 61.427 66.667 0.00 0.00 37.42 3.46
310 311 4.514577 CTCTACCGTGCCGCTGGG 62.515 72.222 7.09 3.42 0.00 4.45
311 312 4.514577 CCTCTACCGTGCCGCTGG 62.515 72.222 1.19 1.19 0.00 4.85
312 313 3.417275 CTCCTCTACCGTGCCGCTG 62.417 68.421 0.00 0.00 0.00 5.18
313 314 3.141488 CTCCTCTACCGTGCCGCT 61.141 66.667 0.00 0.00 0.00 5.52
314 315 4.874977 GCTCCTCTACCGTGCCGC 62.875 72.222 0.00 0.00 0.00 6.53
315 316 4.208686 GGCTCCTCTACCGTGCCG 62.209 72.222 0.00 0.00 33.96 5.69
316 317 4.208686 CGGCTCCTCTACCGTGCC 62.209 72.222 0.00 0.00 44.46 5.01
321 322 2.433146 GGGAACCGGCTCCTCTACC 61.433 68.421 22.93 2.57 40.86 3.18
322 323 3.218227 GGGAACCGGCTCCTCTAC 58.782 66.667 22.93 2.96 40.86 2.59
334 335 3.443045 CATGTGGCGCAGGGGAAC 61.443 66.667 10.83 0.00 0.00 3.62
335 336 4.738998 CCATGTGGCGCAGGGGAA 62.739 66.667 23.26 0.00 44.74 3.97
378 385 1.450848 TAGGATGTCGTCGCCGAGT 60.451 57.895 0.00 0.00 45.26 4.18
447 454 4.729918 AAAGGCTGGCAGGCGAGG 62.730 66.667 31.83 0.00 46.58 4.63
634 641 1.990614 GGGCGAAGTCTCCTCCCTT 60.991 63.158 0.00 0.00 34.19 3.95
868 881 1.334869 GGAAATGCATACCGCCTTGAG 59.665 52.381 0.00 0.00 41.33 3.02
1150 1166 1.004918 GCACACAGAGCTTACCGGT 60.005 57.895 13.98 13.98 0.00 5.28
1202 1218 4.129737 CGCCGTCATCCTCACCGT 62.130 66.667 0.00 0.00 0.00 4.83
1266 1282 3.087253 ATCGGTTCCATCGCCCCA 61.087 61.111 0.00 0.00 0.00 4.96
1817 1847 8.873830 CATGATACGAGGCTAAAACATATAAGG 58.126 37.037 0.00 0.00 0.00 2.69
1879 1909 2.819608 ACACATAATGGTGGCAGAACAC 59.180 45.455 0.00 0.00 43.08 3.32
1967 1997 3.808728 AGCAATATAAAAGCTCTGGCGA 58.191 40.909 0.00 0.00 44.37 5.54
1968 1998 4.201950 ACAAGCAATATAAAAGCTCTGGCG 60.202 41.667 0.00 0.00 44.37 5.69
2012 2045 5.277538 GCCGGATGAACTGATACAGAAATTC 60.278 44.000 5.05 0.71 35.18 2.17
2060 2093 3.871594 CAGAATTGTATCCCGACAACCTC 59.128 47.826 0.00 0.00 41.93 3.85
2114 2147 0.033920 TATCCAGCATTCGCGCATCT 59.966 50.000 8.75 0.00 45.49 2.90
2205 2240 6.717413 TCAAACTTCACCGTAATAACAACAC 58.283 36.000 0.00 0.00 0.00 3.32
2233 2268 7.279758 CACACCAACACCAAAAGATAAAACAAT 59.720 33.333 0.00 0.00 0.00 2.71
2314 2349 2.474410 AGAAATGAACCTGGACCGTC 57.526 50.000 0.00 0.00 0.00 4.79
2327 2362 9.760660 CTTCAACTAAGATTAACCGAAGAAATG 57.239 33.333 0.00 0.00 37.38 2.32
2336 2371 7.430441 TGCAAAACCTTCAACTAAGATTAACC 58.570 34.615 0.00 0.00 37.38 2.85
2360 2395 2.420628 TCTCAATGCGTTTTTGCCTG 57.579 45.000 0.00 0.00 0.00 4.85
2374 2409 6.269538 AGCATAGCCTATCTCAGAAATCTCAA 59.730 38.462 0.00 0.00 0.00 3.02
2393 2428 7.436376 TCGAACATGATAGAAAGACAAGCATAG 59.564 37.037 0.00 0.00 0.00 2.23
2430 2478 3.644966 AACCTGAACCAGAACTGTTCA 57.355 42.857 21.50 5.79 35.99 3.18
2453 2503 7.035004 GCATTTGCATCAGATAAACCAAACTA 58.965 34.615 0.00 0.00 41.59 2.24
2457 2507 4.222366 TGGCATTTGCATCAGATAAACCAA 59.778 37.500 4.74 0.00 44.36 3.67
2513 2571 1.818642 CTTCAGCTTCTTCCCTGTGG 58.181 55.000 0.00 0.00 0.00 4.17
2545 2603 1.410932 CCACAAAACCTCCAACCCAGA 60.411 52.381 0.00 0.00 0.00 3.86
2546 2604 1.039856 CCACAAAACCTCCAACCCAG 58.960 55.000 0.00 0.00 0.00 4.45
2547 2605 0.631753 TCCACAAAACCTCCAACCCA 59.368 50.000 0.00 0.00 0.00 4.51
2548 2606 2.009681 ATCCACAAAACCTCCAACCC 57.990 50.000 0.00 0.00 0.00 4.11
2549 2607 5.738619 ATTTATCCACAAAACCTCCAACC 57.261 39.130 0.00 0.00 0.00 3.77
2550 2608 7.039993 AGTGTATTTATCCACAAAACCTCCAAC 60.040 37.037 0.00 0.00 33.99 3.77
2551 2609 7.007723 AGTGTATTTATCCACAAAACCTCCAA 58.992 34.615 0.00 0.00 33.99 3.53
2552 2610 6.432783 CAGTGTATTTATCCACAAAACCTCCA 59.567 38.462 0.00 0.00 33.99 3.86
2553 2611 6.657541 TCAGTGTATTTATCCACAAAACCTCC 59.342 38.462 0.00 0.00 33.99 4.30
2554 2612 7.681939 TCAGTGTATTTATCCACAAAACCTC 57.318 36.000 0.00 0.00 33.99 3.85
2555 2613 8.650143 AATCAGTGTATTTATCCACAAAACCT 57.350 30.769 0.00 0.00 33.99 3.50
2556 2614 9.353999 GAAATCAGTGTATTTATCCACAAAACC 57.646 33.333 0.00 0.00 33.99 3.27
2557 2615 9.061610 CGAAATCAGTGTATTTATCCACAAAAC 57.938 33.333 0.00 0.00 33.99 2.43
2558 2616 7.753132 GCGAAATCAGTGTATTTATCCACAAAA 59.247 33.333 0.00 0.00 33.99 2.44
2559 2617 7.120579 AGCGAAATCAGTGTATTTATCCACAAA 59.879 33.333 0.00 0.00 33.99 2.83
2560 2618 6.597672 AGCGAAATCAGTGTATTTATCCACAA 59.402 34.615 0.00 0.00 33.99 3.33
2561 2619 6.112734 AGCGAAATCAGTGTATTTATCCACA 58.887 36.000 0.00 0.00 33.99 4.17
2562 2620 6.604735 AGCGAAATCAGTGTATTTATCCAC 57.395 37.500 0.00 0.00 0.00 4.02
2563 2621 7.602644 GGATAGCGAAATCAGTGTATTTATCCA 59.397 37.037 14.69 0.00 33.87 3.41
2564 2622 7.819900 AGGATAGCGAAATCAGTGTATTTATCC 59.180 37.037 13.25 13.25 33.87 2.59
2565 2623 8.764524 AGGATAGCGAAATCAGTGTATTTATC 57.235 34.615 0.00 0.00 0.00 1.75
2568 2626 9.561069 AATAAGGATAGCGAAATCAGTGTATTT 57.439 29.630 0.00 0.00 0.00 1.40
2569 2627 9.561069 AAATAAGGATAGCGAAATCAGTGTATT 57.439 29.630 0.00 0.00 0.00 1.89
2570 2628 8.993121 CAAATAAGGATAGCGAAATCAGTGTAT 58.007 33.333 0.00 0.00 0.00 2.29
2571 2629 7.985184 ACAAATAAGGATAGCGAAATCAGTGTA 59.015 33.333 0.00 0.00 0.00 2.90
2572 2630 6.823689 ACAAATAAGGATAGCGAAATCAGTGT 59.176 34.615 0.00 0.00 0.00 3.55
2573 2631 7.128331 CACAAATAAGGATAGCGAAATCAGTG 58.872 38.462 0.00 0.00 0.00 3.66
2574 2632 6.823689 ACACAAATAAGGATAGCGAAATCAGT 59.176 34.615 0.00 0.00 0.00 3.41
2575 2633 7.251704 ACACAAATAAGGATAGCGAAATCAG 57.748 36.000 0.00 0.00 0.00 2.90
2576 2634 7.042992 CGTACACAAATAAGGATAGCGAAATCA 60.043 37.037 0.00 0.00 0.00 2.57
2577 2635 7.281484 CGTACACAAATAAGGATAGCGAAATC 58.719 38.462 0.00 0.00 0.00 2.17
2578 2636 6.292703 GCGTACACAAATAAGGATAGCGAAAT 60.293 38.462 0.00 0.00 0.00 2.17
2579 2637 5.005971 GCGTACACAAATAAGGATAGCGAAA 59.994 40.000 0.00 0.00 0.00 3.46
2580 2638 4.505191 GCGTACACAAATAAGGATAGCGAA 59.495 41.667 0.00 0.00 0.00 4.70
2581 2639 4.046462 GCGTACACAAATAAGGATAGCGA 58.954 43.478 0.00 0.00 0.00 4.93
2582 2640 3.799963 TGCGTACACAAATAAGGATAGCG 59.200 43.478 0.00 0.00 0.00 4.26
2583 2641 5.107065 GGATGCGTACACAAATAAGGATAGC 60.107 44.000 0.00 0.00 0.00 2.97
2584 2642 5.118664 CGGATGCGTACACAAATAAGGATAG 59.881 44.000 0.00 0.00 0.00 2.08
2585 2643 4.986034 CGGATGCGTACACAAATAAGGATA 59.014 41.667 0.00 0.00 0.00 2.59
2586 2644 3.807622 CGGATGCGTACACAAATAAGGAT 59.192 43.478 0.00 0.00 0.00 3.24
2587 2645 3.191669 CGGATGCGTACACAAATAAGGA 58.808 45.455 0.00 0.00 0.00 3.36
2588 2646 2.286184 GCGGATGCGTACACAAATAAGG 60.286 50.000 8.84 0.00 0.00 2.69
2589 2647 2.969055 GCGGATGCGTACACAAATAAG 58.031 47.619 8.84 0.00 0.00 1.73
2602 2660 0.318445 GCCATCATTTCAGCGGATGC 60.318 55.000 0.00 0.00 37.64 3.91
2603 2661 1.001706 CAGCCATCATTTCAGCGGATG 60.002 52.381 0.00 0.00 38.47 3.51
2604 2662 1.315690 CAGCCATCATTTCAGCGGAT 58.684 50.000 0.00 0.00 0.00 4.18
2605 2663 0.035152 ACAGCCATCATTTCAGCGGA 60.035 50.000 0.00 0.00 0.00 5.54
2606 2664 0.099968 CACAGCCATCATTTCAGCGG 59.900 55.000 0.00 0.00 0.00 5.52
2607 2665 0.524816 GCACAGCCATCATTTCAGCG 60.525 55.000 0.00 0.00 0.00 5.18
2608 2666 0.528924 TGCACAGCCATCATTTCAGC 59.471 50.000 0.00 0.00 0.00 4.26
2609 2667 1.542472 TGTGCACAGCCATCATTTCAG 59.458 47.619 17.42 0.00 0.00 3.02
2610 2668 1.618487 TGTGCACAGCCATCATTTCA 58.382 45.000 17.42 0.00 0.00 2.69
2611 2669 2.426024 AGATGTGCACAGCCATCATTTC 59.574 45.455 30.16 16.31 38.08 2.17
2612 2670 2.165641 CAGATGTGCACAGCCATCATTT 59.834 45.455 30.16 8.24 38.08 2.32
2613 2671 1.749063 CAGATGTGCACAGCCATCATT 59.251 47.619 30.16 9.03 38.08 2.57
2614 2672 1.064979 TCAGATGTGCACAGCCATCAT 60.065 47.619 30.16 9.81 38.08 2.45
2615 2673 0.325602 TCAGATGTGCACAGCCATCA 59.674 50.000 30.16 9.94 38.08 3.07
2616 2674 1.333931 CATCAGATGTGCACAGCCATC 59.666 52.381 30.16 19.57 36.89 3.51
2617 2675 1.389555 CATCAGATGTGCACAGCCAT 58.610 50.000 30.16 19.77 31.57 4.40
2618 2676 1.310216 GCATCAGATGTGCACAGCCA 61.310 55.000 30.16 18.36 42.08 4.75
2619 2677 1.030488 AGCATCAGATGTGCACAGCC 61.030 55.000 30.16 20.69 44.87 4.85
2620 2678 0.377554 GAGCATCAGATGTGCACAGC 59.622 55.000 27.12 27.12 44.87 4.40
2621 2679 1.734163 TGAGCATCAGATGTGCACAG 58.266 50.000 25.84 11.98 42.56 3.66
2622 2680 3.940229 TGAGCATCAGATGTGCACA 57.060 47.368 24.08 24.08 42.56 4.57
2633 2691 0.666913 ATTGCGCCTTGATGAGCATC 59.333 50.000 4.18 3.55 39.50 3.91
2634 2692 1.971481 TATTGCGCCTTGATGAGCAT 58.029 45.000 4.18 0.00 39.50 3.79
2635 2693 1.971481 ATATTGCGCCTTGATGAGCA 58.029 45.000 4.18 0.00 37.89 4.26
2636 2694 3.047796 CAAATATTGCGCCTTGATGAGC 58.952 45.455 4.18 0.00 0.00 4.26
2637 2695 4.297299 ACAAATATTGCGCCTTGATGAG 57.703 40.909 4.18 0.00 0.00 2.90
2638 2696 4.717233 AACAAATATTGCGCCTTGATGA 57.283 36.364 4.18 0.00 0.00 2.92
2639 2697 6.884096 TTTAACAAATATTGCGCCTTGATG 57.116 33.333 4.18 0.00 0.00 3.07
2640 2698 8.491331 AATTTTAACAAATATTGCGCCTTGAT 57.509 26.923 4.18 0.00 31.89 2.57
2641 2699 7.897575 AATTTTAACAAATATTGCGCCTTGA 57.102 28.000 4.18 0.00 31.89 3.02
2642 2700 8.442384 AGAAATTTTAACAAATATTGCGCCTTG 58.558 29.630 4.18 3.32 31.89 3.61
2643 2701 8.442384 CAGAAATTTTAACAAATATTGCGCCTT 58.558 29.630 4.18 0.00 31.89 4.35
2644 2702 7.412891 GCAGAAATTTTAACAAATATTGCGCCT 60.413 33.333 4.18 0.00 31.89 5.52
2645 2703 6.682441 GCAGAAATTTTAACAAATATTGCGCC 59.318 34.615 4.18 0.00 31.89 6.53
2646 2704 7.423314 CAGCAGAAATTTTAACAAATATTGCGC 59.577 33.333 0.00 0.00 37.74 6.09
2647 2705 8.646356 TCAGCAGAAATTTTAACAAATATTGCG 58.354 29.630 0.00 0.00 37.74 4.85
2654 2712 8.547069 CGGAAAATCAGCAGAAATTTTAACAAA 58.453 29.630 0.00 0.00 35.72 2.83
2655 2713 7.923344 TCGGAAAATCAGCAGAAATTTTAACAA 59.077 29.630 0.00 0.00 35.72 2.83
2656 2714 7.429633 TCGGAAAATCAGCAGAAATTTTAACA 58.570 30.769 0.00 0.00 35.72 2.41
2657 2715 7.867445 TCGGAAAATCAGCAGAAATTTTAAC 57.133 32.000 0.00 0.00 35.72 2.01
2658 2716 8.303156 TCATCGGAAAATCAGCAGAAATTTTAA 58.697 29.630 0.00 0.00 35.72 1.52
2659 2717 7.754924 GTCATCGGAAAATCAGCAGAAATTTTA 59.245 33.333 0.00 0.00 35.72 1.52
2660 2718 6.587608 GTCATCGGAAAATCAGCAGAAATTTT 59.412 34.615 0.00 0.00 37.69 1.82
2661 2719 6.095377 GTCATCGGAAAATCAGCAGAAATTT 58.905 36.000 0.00 0.00 0.00 1.82
2662 2720 5.183713 TGTCATCGGAAAATCAGCAGAAATT 59.816 36.000 0.00 0.00 0.00 1.82
2663 2721 4.701651 TGTCATCGGAAAATCAGCAGAAAT 59.298 37.500 0.00 0.00 0.00 2.17
2664 2722 4.071423 TGTCATCGGAAAATCAGCAGAAA 58.929 39.130 0.00 0.00 0.00 2.52
2665 2723 3.673902 TGTCATCGGAAAATCAGCAGAA 58.326 40.909 0.00 0.00 0.00 3.02
2666 2724 3.264947 CTGTCATCGGAAAATCAGCAGA 58.735 45.455 0.00 0.00 0.00 4.26
2667 2725 2.353889 CCTGTCATCGGAAAATCAGCAG 59.646 50.000 0.00 0.00 0.00 4.24
2668 2726 2.290260 ACCTGTCATCGGAAAATCAGCA 60.290 45.455 0.00 0.00 0.00 4.41
2669 2727 2.096496 CACCTGTCATCGGAAAATCAGC 59.904 50.000 0.00 0.00 0.00 4.26
2670 2728 2.096496 GCACCTGTCATCGGAAAATCAG 59.904 50.000 0.00 0.00 0.00 2.90
2671 2729 2.083774 GCACCTGTCATCGGAAAATCA 58.916 47.619 0.00 0.00 0.00 2.57
2672 2730 1.401905 GGCACCTGTCATCGGAAAATC 59.598 52.381 0.00 0.00 0.00 2.17
2673 2731 1.271871 TGGCACCTGTCATCGGAAAAT 60.272 47.619 0.00 0.00 0.00 1.82
2674 2732 0.109532 TGGCACCTGTCATCGGAAAA 59.890 50.000 0.00 0.00 0.00 2.29
2675 2733 0.327924 ATGGCACCTGTCATCGGAAA 59.672 50.000 0.00 0.00 34.97 3.13
2676 2734 0.327924 AATGGCACCTGTCATCGGAA 59.672 50.000 0.00 0.00 39.84 4.30
2677 2735 0.327924 AAATGGCACCTGTCATCGGA 59.672 50.000 0.00 0.00 39.84 4.55
2678 2736 0.734889 GAAATGGCACCTGTCATCGG 59.265 55.000 0.00 0.00 39.84 4.18
2679 2737 1.667724 GAGAAATGGCACCTGTCATCG 59.332 52.381 0.00 0.00 39.84 3.84
2680 2738 2.019984 GGAGAAATGGCACCTGTCATC 58.980 52.381 0.00 0.00 39.84 2.92
2681 2739 1.341383 GGGAGAAATGGCACCTGTCAT 60.341 52.381 0.00 0.00 43.07 3.06
2682 2740 0.038166 GGGAGAAATGGCACCTGTCA 59.962 55.000 0.00 0.00 0.00 3.58
2683 2741 0.329596 AGGGAGAAATGGCACCTGTC 59.670 55.000 0.00 0.00 0.00 3.51
2684 2742 2.479562 AGGGAGAAATGGCACCTGT 58.520 52.632 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.