Multiple sequence alignment - TraesCS1A01G092600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G092600 chr1A 100.000 2240 0 0 1 2240 85028103 85030342 0.000000e+00 4137.0
1 TraesCS1A01G092600 chr1A 82.308 130 12 7 3 121 476869804 476869933 3.940000e-18 102.0
2 TraesCS1A01G092600 chr1B 91.788 1437 70 21 120 1511 142291741 142293174 0.000000e+00 1956.0
3 TraesCS1A01G092600 chr1B 91.630 227 17 2 1740 1965 142293313 142293538 1.670000e-81 313.0
4 TraesCS1A01G092600 chr1B 90.647 139 12 1 1561 1698 142293173 142293311 1.370000e-42 183.0
5 TraesCS1A01G092600 chr1D 92.523 535 30 7 120 646 89116758 89117290 0.000000e+00 758.0
6 TraesCS1A01G092600 chr2D 90.840 262 16 5 1963 2216 558801620 558801359 5.920000e-91 344.0
7 TraesCS1A01G092600 chr4A 90.114 263 22 4 1960 2219 589590887 589590626 2.760000e-89 339.0
8 TraesCS1A01G092600 chr4A 89.272 261 20 3 1964 2216 674617054 674616794 9.980000e-84 320.0
9 TraesCS1A01G092600 chr5D 89.259 270 20 6 1959 2220 279292866 279293134 1.660000e-86 329.0
10 TraesCS1A01G092600 chr3B 89.844 256 22 4 1964 2216 652732869 652732615 2.150000e-85 326.0
11 TraesCS1A01G092600 chr3B 89.272 261 21 4 1963 2216 20790488 20790228 9.980000e-84 320.0
12 TraesCS1A01G092600 chr6B 88.806 268 22 5 1960 2220 365632374 365632640 2.780000e-84 322.0
13 TraesCS1A01G092600 chr6B 82.258 124 17 3 3 121 375723585 375723708 3.940000e-18 102.0
14 TraesCS1A01G092600 chr5A 89.272 261 21 4 1963 2216 294560893 294561153 9.980000e-84 320.0
15 TraesCS1A01G092600 chr5A 97.297 37 1 0 1518 1554 488428688 488428724 1.860000e-06 63.9
16 TraesCS1A01G092600 chr2A 89.015 264 21 3 1961 2216 606519060 606519323 9.980000e-84 320.0
17 TraesCS1A01G092600 chr2A 83.333 126 17 2 3 124 311542053 311541928 1.820000e-21 113.0
18 TraesCS1A01G092600 chr6D 87.805 123 11 3 3 124 115876950 115876831 8.340000e-30 141.0
19 TraesCS1A01G092600 chr2B 86.400 125 11 5 3 121 334937780 334937904 5.020000e-27 132.0
20 TraesCS1A01G092600 chr7B 87.179 117 9 2 3 114 482090592 482090707 6.490000e-26 128.0
21 TraesCS1A01G092600 chr4B 83.594 128 15 4 3 124 375820740 375820613 5.060000e-22 115.0
22 TraesCS1A01G092600 chr4B 97.500 40 1 0 1510 1549 579885694 579885733 3.990000e-08 69.4
23 TraesCS1A01G092600 chr6A 83.721 129 11 6 3 121 61510056 61510184 1.820000e-21 113.0
24 TraesCS1A01G092600 chr3A 82.090 134 16 5 3 128 538103830 538103963 8.460000e-20 108.0
25 TraesCS1A01G092600 chr3D 95.918 49 2 0 1509 1557 409018896 409018944 1.840000e-11 80.5
26 TraesCS1A01G092600 chrUn 100.000 30 0 0 1524 1553 22763130 22763159 3.110000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G092600 chr1A 85028103 85030342 2239 False 4137.000000 4137 100.000 1 2240 1 chr1A.!!$F1 2239
1 TraesCS1A01G092600 chr1B 142291741 142293538 1797 False 817.333333 1956 91.355 120 1965 3 chr1B.!!$F1 1845
2 TraesCS1A01G092600 chr1D 89116758 89117290 532 False 758.000000 758 92.523 120 646 1 chr1D.!!$F1 526

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
936 983 0.323725 CATTGGACTGGGACCTTGGG 60.324 60.0 0.0 0.0 0.0 4.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1742 1791 0.173029 TTGCCTGCCAAATGCGTATG 59.827 50.0 0.0 0.0 45.6 2.39 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.891828 TTTAAGCTTCCACAAATATATAATGCG 57.108 29.630 0.00 0.00 0.00 4.73
27 28 6.500684 AGCTTCCACAAATATATAATGCGG 57.499 37.500 0.00 0.00 0.00 5.69
28 29 5.095490 GCTTCCACAAATATATAATGCGGC 58.905 41.667 0.00 0.00 0.00 6.53
29 30 5.335583 GCTTCCACAAATATATAATGCGGCA 60.336 40.000 4.58 4.58 0.00 5.69
30 31 6.641169 TTCCACAAATATATAATGCGGCAA 57.359 33.333 6.82 0.00 0.00 4.52
31 32 6.641169 TCCACAAATATATAATGCGGCAAA 57.359 33.333 6.82 0.00 0.00 3.68
32 33 7.043961 TCCACAAATATATAATGCGGCAAAA 57.956 32.000 6.82 0.00 0.00 2.44
33 34 7.492524 TCCACAAATATATAATGCGGCAAAAA 58.507 30.769 6.82 0.00 0.00 1.94
34 35 7.651304 TCCACAAATATATAATGCGGCAAAAAG 59.349 33.333 6.82 0.00 0.00 2.27
35 36 7.651304 CCACAAATATATAATGCGGCAAAAAGA 59.349 33.333 6.82 0.00 0.00 2.52
36 37 8.479280 CACAAATATATAATGCGGCAAAAAGAC 58.521 33.333 6.82 0.00 0.00 3.01
37 38 8.194104 ACAAATATATAATGCGGCAAAAAGACA 58.806 29.630 6.82 0.00 0.00 3.41
38 39 8.479280 CAAATATATAATGCGGCAAAAAGACAC 58.521 33.333 6.82 0.00 0.00 3.67
39 40 3.932545 ATAATGCGGCAAAAAGACACA 57.067 38.095 6.82 0.00 0.00 3.72
40 41 2.593346 AATGCGGCAAAAAGACACAA 57.407 40.000 6.82 0.00 0.00 3.33
41 42 2.593346 ATGCGGCAAAAAGACACAAA 57.407 40.000 6.82 0.00 0.00 2.83
42 43 2.370281 TGCGGCAAAAAGACACAAAA 57.630 40.000 0.00 0.00 0.00 2.44
43 44 2.688507 TGCGGCAAAAAGACACAAAAA 58.311 38.095 0.00 0.00 0.00 1.94
77 78 5.659440 AAAAACAGACCACAAACAGATGT 57.341 34.783 0.00 0.00 0.00 3.06
131 132 6.478673 CCTACACAAACCCTTGAACATTTTTC 59.521 38.462 0.00 0.00 36.33 2.29
138 140 4.275936 ACCCTTGAACATTTTTCTCGACAG 59.724 41.667 0.00 0.00 0.00 3.51
280 312 9.741168 CTTTGAGTACGTGTTCTAATTAATGTG 57.259 33.333 0.00 0.00 0.00 3.21
315 347 2.011222 TGGGTGAAAGAAACGTGTGTC 58.989 47.619 0.00 0.00 0.00 3.67
339 371 7.950496 GTCTACAGTTTTATGTTAACTTCTGCG 59.050 37.037 7.22 0.90 33.73 5.18
346 378 4.764679 ATGTTAACTTCTGCGCATTTGA 57.235 36.364 12.24 0.93 0.00 2.69
430 469 2.747855 CGCTGGGTGAAGAAGGCC 60.748 66.667 0.00 0.00 0.00 5.19
502 541 2.125512 GACCTCGTGCTCGCCAAT 60.126 61.111 2.69 0.00 36.96 3.16
577 616 3.056328 GGCAAGTTCCACCGGCTC 61.056 66.667 0.00 0.00 0.00 4.70
606 645 3.470567 CGTCGAGGCAGCGTTCAC 61.471 66.667 0.00 0.00 0.00 3.18
617 656 1.441515 GCGTTCACGTACGAGCTCA 60.442 57.895 24.41 0.00 43.99 4.26
656 695 0.392461 GCATGGACGGCTTCAAGGTA 60.392 55.000 0.00 0.00 0.00 3.08
668 707 1.276622 TCAAGGTACTCAAGCTCCCC 58.723 55.000 0.00 0.00 38.49 4.81
680 719 4.936081 CTCCCCTACGGCCCGGAT 62.936 72.222 8.57 0.00 0.00 4.18
694 733 1.808411 CCGGATGGGGAATATGAACG 58.192 55.000 0.00 0.00 0.00 3.95
695 734 1.346395 CCGGATGGGGAATATGAACGA 59.654 52.381 0.00 0.00 0.00 3.85
726 773 0.675522 ACAAGATTTACCGTGGCCCG 60.676 55.000 0.00 2.96 0.00 6.13
795 842 1.003118 TCCATGTTTGTCTTCCTCCCG 59.997 52.381 0.00 0.00 0.00 5.14
888 935 1.439679 CCACGGAAACCAAGCTAGTC 58.560 55.000 0.00 0.00 0.00 2.59
897 944 5.335976 GGAAACCAAGCTAGTCCAAATCAAG 60.336 44.000 0.00 0.00 0.00 3.02
936 983 0.323725 CATTGGACTGGGACCTTGGG 60.324 60.000 0.00 0.00 0.00 4.12
939 986 2.671682 GACTGGGACCTTGGGAGC 59.328 66.667 0.00 0.00 0.00 4.70
1009 1056 1.709147 CCTGCGAGGCATGTACAAGC 61.709 60.000 14.57 14.57 38.13 4.01
1042 1089 1.827399 GCCGACCTTCCTGACCAAGA 61.827 60.000 0.00 0.00 0.00 3.02
1147 1194 1.676968 CCGGACCATGTGGAGTTCA 59.323 57.895 5.96 0.00 38.94 3.18
1152 1199 0.615331 ACCATGTGGAGTTCATCGCT 59.385 50.000 5.96 0.00 38.94 4.93
1155 1202 2.349590 CATGTGGAGTTCATCGCTGAA 58.650 47.619 0.00 0.00 39.07 3.02
1188 1235 0.683412 TCATCATCATGGAGGAGCGG 59.317 55.000 0.00 0.00 0.00 5.52
1254 1301 1.751437 AGTGATCACGTCGAGATCCA 58.249 50.000 23.99 12.96 40.87 3.41
1263 1310 0.458543 GTCGAGATCCAAAGCGCAGA 60.459 55.000 11.47 0.14 0.00 4.26
1276 1323 5.117592 CCAAAGCGCAGACTATTTCTTTTTG 59.882 40.000 11.47 6.55 28.96 2.44
1277 1324 3.826466 AGCGCAGACTATTTCTTTTTGC 58.174 40.909 11.47 0.00 28.96 3.68
1278 1325 3.253188 AGCGCAGACTATTTCTTTTTGCA 59.747 39.130 11.47 0.00 28.96 4.08
1279 1326 4.082571 AGCGCAGACTATTTCTTTTTGCAT 60.083 37.500 11.47 0.00 28.96 3.96
1280 1327 5.123820 AGCGCAGACTATTTCTTTTTGCATA 59.876 36.000 11.47 0.00 28.96 3.14
1281 1328 5.228012 GCGCAGACTATTTCTTTTTGCATAC 59.772 40.000 0.30 0.00 28.96 2.39
1282 1329 6.546395 CGCAGACTATTTCTTTTTGCATACT 58.454 36.000 0.00 0.00 28.96 2.12
1283 1330 7.676338 GCGCAGACTATTTCTTTTTGCATACTA 60.676 37.037 0.30 0.00 28.96 1.82
1298 1346 6.578020 TGCATACTAAACTTAAATCGACCG 57.422 37.500 0.00 0.00 0.00 4.79
1299 1347 5.005971 TGCATACTAAACTTAAATCGACCGC 59.994 40.000 0.00 0.00 0.00 5.68
1305 1353 5.866335 AAACTTAAATCGACCGCATTACA 57.134 34.783 0.00 0.00 0.00 2.41
1308 1356 7.542534 AACTTAAATCGACCGCATTACATTA 57.457 32.000 0.00 0.00 0.00 1.90
1364 1412 1.202855 TGCTCTGCTCCTTGCTTTTCT 60.203 47.619 0.00 0.00 43.37 2.52
1365 1413 2.038952 TGCTCTGCTCCTTGCTTTTCTA 59.961 45.455 0.00 0.00 43.37 2.10
1379 1427 7.272084 CCTTGCTTTTCTATTTCTTCGTTGATG 59.728 37.037 0.00 0.00 0.00 3.07
1381 1429 6.072508 TGCTTTTCTATTTCTTCGTTGATGCT 60.073 34.615 0.00 0.00 0.00 3.79
1416 1464 5.049543 GGTTACGTGTTAGGCAACAACATTA 60.050 40.000 0.00 0.00 45.99 1.90
1420 1468 4.212425 CGTGTTAGGCAACAACATTACAGA 59.788 41.667 4.48 0.00 45.99 3.41
1436 1484 1.227853 AGACCCAGCAAACACCGAC 60.228 57.895 0.00 0.00 0.00 4.79
1437 1485 1.227853 GACCCAGCAAACACCGACT 60.228 57.895 0.00 0.00 0.00 4.18
1443 1491 2.605338 CCAGCAAACACCGACTTGAATG 60.605 50.000 0.00 0.00 0.00 2.67
1448 1496 1.354101 ACACCGACTTGAATGGGGTA 58.646 50.000 0.00 0.00 37.72 3.69
1457 1505 3.139397 ACTTGAATGGGGTAAACACAGGA 59.861 43.478 0.00 0.00 0.00 3.86
1464 1512 1.530323 GGTAAACACAGGACGCCATT 58.470 50.000 0.00 0.00 0.00 3.16
1465 1513 1.199097 GGTAAACACAGGACGCCATTG 59.801 52.381 0.00 0.00 0.00 2.82
1510 1558 4.508128 GCGCCGTGGCAGTAGCTA 62.508 66.667 12.06 0.00 42.06 3.32
1517 1565 3.209091 TGGCAGTAGCTACTCCCTC 57.791 57.895 29.80 16.89 35.13 4.30
1518 1566 0.397254 TGGCAGTAGCTACTCCCTCC 60.397 60.000 29.80 22.95 35.13 4.30
1519 1567 1.457009 GGCAGTAGCTACTCCCTCCG 61.457 65.000 24.38 13.37 41.70 4.63
1520 1568 0.752376 GCAGTAGCTACTCCCTCCGT 60.752 60.000 23.68 0.00 37.91 4.69
1521 1569 1.310904 CAGTAGCTACTCCCTCCGTC 58.689 60.000 23.68 0.00 33.46 4.79
1522 1570 1.134037 CAGTAGCTACTCCCTCCGTCT 60.134 57.143 23.68 0.00 33.46 4.18
1523 1571 1.141455 AGTAGCTACTCCCTCCGTCTC 59.859 57.143 20.95 0.00 0.00 3.36
1524 1572 1.134159 GTAGCTACTCCCTCCGTCTCA 60.134 57.143 16.88 0.00 0.00 3.27
1525 1573 0.553819 AGCTACTCCCTCCGTCTCAT 59.446 55.000 0.00 0.00 0.00 2.90
1526 1574 1.775459 AGCTACTCCCTCCGTCTCATA 59.225 52.381 0.00 0.00 0.00 2.15
1527 1575 2.175069 AGCTACTCCCTCCGTCTCATAA 59.825 50.000 0.00 0.00 0.00 1.90
1528 1576 2.293955 GCTACTCCCTCCGTCTCATAAC 59.706 54.545 0.00 0.00 0.00 1.89
1529 1577 2.526888 ACTCCCTCCGTCTCATAACA 57.473 50.000 0.00 0.00 0.00 2.41
1530 1578 3.033659 ACTCCCTCCGTCTCATAACAT 57.966 47.619 0.00 0.00 0.00 2.71
1531 1579 4.180377 ACTCCCTCCGTCTCATAACATA 57.820 45.455 0.00 0.00 0.00 2.29
1532 1580 4.543689 ACTCCCTCCGTCTCATAACATAA 58.456 43.478 0.00 0.00 0.00 1.90
1533 1581 4.585162 ACTCCCTCCGTCTCATAACATAAG 59.415 45.833 0.00 0.00 0.00 1.73
1534 1582 4.800023 TCCCTCCGTCTCATAACATAAGA 58.200 43.478 0.00 0.00 0.00 2.10
1535 1583 4.827835 TCCCTCCGTCTCATAACATAAGAG 59.172 45.833 0.00 0.00 0.00 2.85
1536 1584 4.551388 CCTCCGTCTCATAACATAAGAGC 58.449 47.826 0.00 0.00 0.00 4.09
1537 1585 4.222886 CTCCGTCTCATAACATAAGAGCG 58.777 47.826 0.00 0.00 0.00 5.03
1538 1586 3.630769 TCCGTCTCATAACATAAGAGCGT 59.369 43.478 0.00 0.00 31.69 5.07
1539 1587 4.097437 TCCGTCTCATAACATAAGAGCGTT 59.903 41.667 0.00 0.00 31.69 4.84
1540 1588 4.804139 CCGTCTCATAACATAAGAGCGTTT 59.196 41.667 0.00 0.00 31.69 3.60
1541 1589 5.291128 CCGTCTCATAACATAAGAGCGTTTT 59.709 40.000 0.00 0.00 31.69 2.43
1542 1590 6.183360 CCGTCTCATAACATAAGAGCGTTTTT 60.183 38.462 0.00 0.00 31.69 1.94
1543 1591 6.678663 CGTCTCATAACATAAGAGCGTTTTTG 59.321 38.462 0.00 0.00 0.00 2.44
1544 1592 7.411480 CGTCTCATAACATAAGAGCGTTTTTGA 60.411 37.037 0.00 0.00 0.00 2.69
1545 1593 7.688578 GTCTCATAACATAAGAGCGTTTTTGAC 59.311 37.037 0.00 0.00 0.00 3.18
1546 1594 7.386573 TCTCATAACATAAGAGCGTTTTTGACA 59.613 33.333 0.00 0.00 0.00 3.58
1547 1595 7.295201 TCATAACATAAGAGCGTTTTTGACAC 58.705 34.615 0.00 0.00 0.00 3.67
1548 1596 5.751243 AACATAAGAGCGTTTTTGACACT 57.249 34.783 1.95 0.00 0.00 3.55
1549 1597 5.095691 ACATAAGAGCGTTTTTGACACTG 57.904 39.130 1.95 0.00 0.00 3.66
1550 1598 2.475200 AAGAGCGTTTTTGACACTGC 57.525 45.000 0.00 0.00 0.00 4.40
1551 1599 1.378531 AGAGCGTTTTTGACACTGCA 58.621 45.000 0.00 0.00 0.00 4.41
1552 1600 1.064060 AGAGCGTTTTTGACACTGCAC 59.936 47.619 0.00 0.00 0.00 4.57
1553 1601 0.248054 AGCGTTTTTGACACTGCACG 60.248 50.000 0.00 0.00 0.00 5.34
1554 1602 0.247894 GCGTTTTTGACACTGCACGA 60.248 50.000 0.00 0.00 0.00 4.35
1555 1603 1.730176 CGTTTTTGACACTGCACGAG 58.270 50.000 0.00 0.00 0.00 4.18
1556 1604 1.594518 CGTTTTTGACACTGCACGAGG 60.595 52.381 0.00 0.00 0.00 4.63
1557 1605 1.021202 TTTTTGACACTGCACGAGGG 58.979 50.000 0.00 0.00 0.00 4.30
1558 1606 0.179234 TTTTGACACTGCACGAGGGA 59.821 50.000 0.00 0.00 0.00 4.20
1559 1607 0.249868 TTTGACACTGCACGAGGGAG 60.250 55.000 0.00 0.00 41.43 4.30
1573 1621 2.737252 CGAGGGAGTAGTTTGCAAGTTC 59.263 50.000 0.00 0.00 0.00 3.01
1574 1622 2.737252 GAGGGAGTAGTTTGCAAGTTCG 59.263 50.000 0.00 0.00 0.00 3.95
1582 1630 7.095355 GGAGTAGTTTGCAAGTTCGAAGAATTA 60.095 37.037 0.00 0.00 45.90 1.40
1608 1656 8.682936 AACAAGATGTTAGTGACAAGAAGAAT 57.317 30.769 0.00 0.00 42.62 2.40
1613 1661 8.105829 AGATGTTAGTGACAAGAAGAATGGAAT 58.894 33.333 0.00 0.00 42.62 3.01
1622 1670 8.733458 TGACAAGAAGAATGGAATTATCAAGTG 58.267 33.333 0.00 0.00 36.07 3.16
1672 1720 3.664930 GCTTGTGCTAAGCGTTCAG 57.335 52.632 9.85 0.00 36.03 3.02
1685 1734 3.135994 AGCGTTCAGTTTTTCATACGGT 58.864 40.909 0.00 0.00 35.27 4.83
1689 1738 4.025563 CGTTCAGTTTTTCATACGGTGTCA 60.026 41.667 0.00 0.00 0.00 3.58
1698 1747 9.321590 GTTTTTCATACGGTGTCAAAATAGTAC 57.678 33.333 0.00 0.00 0.00 2.73
1699 1748 8.836268 TTTTCATACGGTGTCAAAATAGTACT 57.164 30.769 0.00 0.00 0.00 2.73
1700 1749 8.470040 TTTCATACGGTGTCAAAATAGTACTC 57.530 34.615 0.00 0.00 0.00 2.59
1701 1750 6.567050 TCATACGGTGTCAAAATAGTACTCC 58.433 40.000 0.00 0.00 0.00 3.85
1702 1751 4.198028 ACGGTGTCAAAATAGTACTCCC 57.802 45.455 0.00 0.00 0.00 4.30
1703 1752 3.836562 ACGGTGTCAAAATAGTACTCCCT 59.163 43.478 0.00 0.00 0.00 4.20
1704 1753 4.081807 ACGGTGTCAAAATAGTACTCCCTC 60.082 45.833 0.00 0.00 0.00 4.30
1705 1754 4.430908 GGTGTCAAAATAGTACTCCCTCG 58.569 47.826 0.00 0.00 0.00 4.63
1706 1755 4.430908 GTGTCAAAATAGTACTCCCTCGG 58.569 47.826 0.00 0.00 0.00 4.63
1707 1756 4.081807 GTGTCAAAATAGTACTCCCTCGGT 60.082 45.833 0.00 0.00 0.00 4.69
1708 1757 4.159135 TGTCAAAATAGTACTCCCTCGGTC 59.841 45.833 0.00 0.00 0.00 4.79
1709 1758 4.401837 GTCAAAATAGTACTCCCTCGGTCT 59.598 45.833 0.00 0.00 0.00 3.85
1710 1759 4.643784 TCAAAATAGTACTCCCTCGGTCTC 59.356 45.833 0.00 0.00 0.00 3.36
1711 1760 3.947612 AATAGTACTCCCTCGGTCTCA 57.052 47.619 0.00 0.00 0.00 3.27
1712 1761 4.456662 AATAGTACTCCCTCGGTCTCAT 57.543 45.455 0.00 0.00 0.00 2.90
1713 1762 5.579753 AATAGTACTCCCTCGGTCTCATA 57.420 43.478 0.00 0.00 0.00 2.15
1714 1763 3.947612 AGTACTCCCTCGGTCTCATAA 57.052 47.619 0.00 0.00 0.00 1.90
1715 1764 4.456662 AGTACTCCCTCGGTCTCATAAT 57.543 45.455 0.00 0.00 0.00 1.28
1716 1765 4.145807 AGTACTCCCTCGGTCTCATAATG 58.854 47.826 0.00 0.00 0.00 1.90
1717 1766 3.033659 ACTCCCTCGGTCTCATAATGT 57.966 47.619 0.00 0.00 0.00 2.71
1718 1767 4.180377 ACTCCCTCGGTCTCATAATGTA 57.820 45.455 0.00 0.00 0.00 2.29
1719 1768 4.543689 ACTCCCTCGGTCTCATAATGTAA 58.456 43.478 0.00 0.00 0.00 2.41
1720 1769 4.585162 ACTCCCTCGGTCTCATAATGTAAG 59.415 45.833 0.00 0.00 0.00 2.34
1721 1770 4.800023 TCCCTCGGTCTCATAATGTAAGA 58.200 43.478 0.00 0.00 0.00 2.10
1722 1771 5.394738 TCCCTCGGTCTCATAATGTAAGAT 58.605 41.667 0.00 0.00 0.00 2.40
1723 1772 5.477291 TCCCTCGGTCTCATAATGTAAGATC 59.523 44.000 0.00 0.00 0.00 2.75
1724 1773 5.478679 CCCTCGGTCTCATAATGTAAGATCT 59.521 44.000 0.00 0.00 0.00 2.75
1725 1774 6.015010 CCCTCGGTCTCATAATGTAAGATCTT 60.015 42.308 13.56 13.56 0.00 2.40
1726 1775 7.437748 CCTCGGTCTCATAATGTAAGATCTTT 58.562 38.462 14.36 0.00 0.00 2.52
1727 1776 7.928706 CCTCGGTCTCATAATGTAAGATCTTTT 59.071 37.037 14.36 4.67 0.00 2.27
1728 1777 9.319143 CTCGGTCTCATAATGTAAGATCTTTTT 57.681 33.333 14.36 8.07 0.00 1.94
1729 1778 9.314321 TCGGTCTCATAATGTAAGATCTTTTTC 57.686 33.333 14.36 5.74 0.00 2.29
1730 1779 9.319143 CGGTCTCATAATGTAAGATCTTTTTCT 57.681 33.333 14.36 0.00 0.00 2.52
1742 1791 7.665561 AAGATCTTTTTCTTGACTCTACTGC 57.334 36.000 0.88 0.00 34.68 4.40
1787 1837 2.159142 GCATTTGCAAATCCTAGCAGCT 60.159 45.455 21.70 0.00 42.39 4.24
1808 1858 4.082026 GCTTGTTTGGCTACAATGGAGAAT 60.082 41.667 0.00 0.00 37.39 2.40
1844 1894 7.339482 AGTTTAGAGGTGGAATTTATCAGGAC 58.661 38.462 0.00 0.00 0.00 3.85
1858 1908 2.204463 TCAGGACATTAGGCATGGGAA 58.796 47.619 0.00 0.00 37.17 3.97
1866 1916 2.507407 TAGGCATGGGAAGTTGGTTC 57.493 50.000 0.00 0.00 0.00 3.62
1878 1928 5.238868 GGGAAGTTGGTTCTTAGTCTCAAAC 59.761 44.000 0.00 0.00 35.25 2.93
1890 1940 8.335532 TCTTAGTCTCAAACCCATGTTTATTG 57.664 34.615 0.00 0.00 42.73 1.90
1897 1947 8.303156 TCTCAAACCCATGTTTATTGTATGTTG 58.697 33.333 0.00 0.00 42.73 3.33
1916 1966 6.652205 TGTTGGGAATTAGTAGGAGGAATT 57.348 37.500 0.00 0.00 0.00 2.17
1937 1987 8.704668 GGAATTTAACATCCCACCTGAATTAAT 58.295 33.333 0.00 0.00 0.00 1.40
1950 2000 4.985409 CCTGAATTAATACGGAGAGAGCAC 59.015 45.833 0.00 0.00 0.00 4.40
1965 2015 6.293955 GGAGAGAGCACAGAAGAGATATGTAC 60.294 46.154 0.00 0.00 30.76 2.90
1966 2016 6.364701 AGAGAGCACAGAAGAGATATGTACT 58.635 40.000 0.00 0.00 30.76 2.73
1967 2017 6.486657 AGAGAGCACAGAAGAGATATGTACTC 59.513 42.308 0.00 0.00 41.83 2.59
1968 2018 5.534654 AGAGCACAGAAGAGATATGTACTCC 59.465 44.000 0.00 0.00 42.27 3.85
1969 2019 4.586841 AGCACAGAAGAGATATGTACTCCC 59.413 45.833 0.00 0.00 30.76 4.30
1970 2020 4.586841 GCACAGAAGAGATATGTACTCCCT 59.413 45.833 0.00 0.00 30.76 4.20
1971 2021 5.278758 GCACAGAAGAGATATGTACTCCCTC 60.279 48.000 0.00 0.00 30.76 4.30
1972 2022 5.242838 CACAGAAGAGATATGTACTCCCTCC 59.757 48.000 0.00 0.00 30.76 4.30
1973 2023 5.103473 ACAGAAGAGATATGTACTCCCTCCA 60.103 44.000 0.00 0.00 29.94 3.86
1974 2024 6.015918 CAGAAGAGATATGTACTCCCTCCAT 58.984 44.000 0.00 0.00 35.27 3.41
1975 2025 6.496565 CAGAAGAGATATGTACTCCCTCCATT 59.503 42.308 0.00 0.00 35.27 3.16
1976 2026 7.016072 CAGAAGAGATATGTACTCCCTCCATTT 59.984 40.741 0.00 0.00 35.27 2.32
1977 2027 7.570607 AGAAGAGATATGTACTCCCTCCATTTT 59.429 37.037 0.00 0.00 35.27 1.82
1978 2028 7.698163 AGAGATATGTACTCCCTCCATTTTT 57.302 36.000 0.00 0.00 35.27 1.94
1979 2029 8.798975 AGAGATATGTACTCCCTCCATTTTTA 57.201 34.615 0.00 0.00 35.27 1.52
1980 2030 9.398921 AGAGATATGTACTCCCTCCATTTTTAT 57.601 33.333 0.00 0.00 35.27 1.40
1986 2036 9.628500 ATGTACTCCCTCCATTTTTATTTAGTC 57.372 33.333 0.00 0.00 0.00 2.59
1987 2037 8.050930 TGTACTCCCTCCATTTTTATTTAGTCC 58.949 37.037 0.00 0.00 0.00 3.85
1988 2038 6.120220 ACTCCCTCCATTTTTATTTAGTCCG 58.880 40.000 0.00 0.00 0.00 4.79
1989 2039 4.885325 TCCCTCCATTTTTATTTAGTCCGC 59.115 41.667 0.00 0.00 0.00 5.54
1990 2040 4.642885 CCCTCCATTTTTATTTAGTCCGCA 59.357 41.667 0.00 0.00 0.00 5.69
1991 2041 5.301805 CCCTCCATTTTTATTTAGTCCGCAT 59.698 40.000 0.00 0.00 0.00 4.73
1992 2042 6.488683 CCCTCCATTTTTATTTAGTCCGCATA 59.511 38.462 0.00 0.00 0.00 3.14
1993 2043 7.176690 CCCTCCATTTTTATTTAGTCCGCATAT 59.823 37.037 0.00 0.00 0.00 1.78
1994 2044 8.576442 CCTCCATTTTTATTTAGTCCGCATATT 58.424 33.333 0.00 0.00 0.00 1.28
1997 2047 9.341899 CCATTTTTATTTAGTCCGCATATTAGC 57.658 33.333 0.00 0.00 0.00 3.09
2001 2051 9.944663 TTTTATTTAGTCCGCATATTAGCTTTG 57.055 29.630 0.00 0.00 0.00 2.77
2002 2052 6.560253 ATTTAGTCCGCATATTAGCTTTGG 57.440 37.500 0.00 0.00 0.00 3.28
2003 2053 3.560636 AGTCCGCATATTAGCTTTGGT 57.439 42.857 0.00 0.00 0.00 3.67
2004 2054 3.467803 AGTCCGCATATTAGCTTTGGTC 58.532 45.455 0.00 0.00 0.00 4.02
2005 2055 3.118408 AGTCCGCATATTAGCTTTGGTCA 60.118 43.478 0.00 0.00 0.00 4.02
2006 2056 3.625764 GTCCGCATATTAGCTTTGGTCAA 59.374 43.478 0.00 0.00 0.00 3.18
2007 2057 4.095782 GTCCGCATATTAGCTTTGGTCAAA 59.904 41.667 0.00 0.00 0.00 2.69
2098 2148 9.733556 ATACCATTAGATTTATTACCGAATGCA 57.266 29.630 0.00 0.00 0.00 3.96
2099 2149 7.871853 ACCATTAGATTTATTACCGAATGCAC 58.128 34.615 0.00 0.00 0.00 4.57
2100 2150 7.719633 ACCATTAGATTTATTACCGAATGCACT 59.280 33.333 0.00 0.00 0.00 4.40
2101 2151 8.567948 CCATTAGATTTATTACCGAATGCACTT 58.432 33.333 0.00 0.00 0.00 3.16
2102 2152 9.950680 CATTAGATTTATTACCGAATGCACTTT 57.049 29.630 0.00 0.00 0.00 2.66
2104 2154 7.624360 AGATTTATTACCGAATGCACTTTCA 57.376 32.000 0.00 0.00 0.00 2.69
2105 2155 7.472543 AGATTTATTACCGAATGCACTTTCAC 58.527 34.615 0.00 0.00 0.00 3.18
2106 2156 6.561737 TTTATTACCGAATGCACTTTCACA 57.438 33.333 0.00 0.00 0.00 3.58
2107 2157 6.751514 TTATTACCGAATGCACTTTCACAT 57.248 33.333 0.00 0.00 0.00 3.21
2108 2158 4.678509 TTACCGAATGCACTTTCACATC 57.321 40.909 0.00 0.00 0.00 3.06
2109 2159 2.503331 ACCGAATGCACTTTCACATCA 58.497 42.857 0.00 0.00 0.00 3.07
2110 2160 3.084039 ACCGAATGCACTTTCACATCAT 58.916 40.909 0.00 0.00 0.00 2.45
2111 2161 4.260985 ACCGAATGCACTTTCACATCATA 58.739 39.130 0.00 0.00 0.00 2.15
2112 2162 4.883585 ACCGAATGCACTTTCACATCATAT 59.116 37.500 0.00 0.00 0.00 1.78
2113 2163 6.054941 ACCGAATGCACTTTCACATCATATA 58.945 36.000 0.00 0.00 0.00 0.86
2114 2164 6.203530 ACCGAATGCACTTTCACATCATATAG 59.796 38.462 0.00 0.00 0.00 1.31
2115 2165 6.424812 CCGAATGCACTTTCACATCATATAGA 59.575 38.462 0.00 0.00 0.00 1.98
2116 2166 7.118825 CCGAATGCACTTTCACATCATATAGAT 59.881 37.037 0.00 0.00 37.48 1.98
2117 2167 8.501580 CGAATGCACTTTCACATCATATAGATT 58.498 33.333 0.00 0.00 33.72 2.40
2190 2240 3.987868 TGACTTCGTCAACTCTAATGTGC 59.012 43.478 0.00 0.00 39.78 4.57
2191 2241 3.987868 GACTTCGTCAACTCTAATGTGCA 59.012 43.478 0.00 0.00 32.09 4.57
2192 2242 4.569943 ACTTCGTCAACTCTAATGTGCAT 58.430 39.130 0.00 0.00 0.00 3.96
2193 2243 5.720202 ACTTCGTCAACTCTAATGTGCATA 58.280 37.500 0.00 0.00 0.00 3.14
2194 2244 5.807520 ACTTCGTCAACTCTAATGTGCATAG 59.192 40.000 0.00 0.00 0.00 2.23
2195 2245 5.324784 TCGTCAACTCTAATGTGCATAGT 57.675 39.130 0.00 0.00 0.00 2.12
2196 2246 6.445357 TCGTCAACTCTAATGTGCATAGTA 57.555 37.500 0.00 0.00 0.00 1.82
2197 2247 6.859017 TCGTCAACTCTAATGTGCATAGTAA 58.141 36.000 0.00 0.00 0.00 2.24
2198 2248 7.317390 TCGTCAACTCTAATGTGCATAGTAAA 58.683 34.615 0.00 0.00 0.00 2.01
2199 2249 7.979537 TCGTCAACTCTAATGTGCATAGTAAAT 59.020 33.333 0.00 0.00 0.00 1.40
2200 2250 9.244799 CGTCAACTCTAATGTGCATAGTAAATA 57.755 33.333 0.00 0.00 0.00 1.40
2211 2261 8.050778 TGTGCATAGTAAATAAAAACAGAGGG 57.949 34.615 0.00 0.00 0.00 4.30
2212 2262 7.885922 TGTGCATAGTAAATAAAAACAGAGGGA 59.114 33.333 0.00 0.00 0.00 4.20
2213 2263 8.398665 GTGCATAGTAAATAAAAACAGAGGGAG 58.601 37.037 0.00 0.00 0.00 4.30
2214 2264 8.107095 TGCATAGTAAATAAAAACAGAGGGAGT 58.893 33.333 0.00 0.00 0.00 3.85
2215 2265 9.609346 GCATAGTAAATAAAAACAGAGGGAGTA 57.391 33.333 0.00 0.00 0.00 2.59
2219 2269 9.856162 AGTAAATAAAAACAGAGGGAGTAACAA 57.144 29.630 0.00 0.00 0.00 2.83
2222 2272 8.934023 AATAAAAACAGAGGGAGTAACAATCA 57.066 30.769 0.00 0.00 0.00 2.57
2223 2273 6.884280 AAAAACAGAGGGAGTAACAATCAG 57.116 37.500 0.00 0.00 0.00 2.90
2224 2274 3.618690 ACAGAGGGAGTAACAATCAGC 57.381 47.619 0.00 0.00 0.00 4.26
2225 2275 2.237392 ACAGAGGGAGTAACAATCAGCC 59.763 50.000 0.00 0.00 0.00 4.85
2226 2276 2.503356 CAGAGGGAGTAACAATCAGCCT 59.497 50.000 0.00 0.00 0.00 4.58
2227 2277 3.054802 CAGAGGGAGTAACAATCAGCCTT 60.055 47.826 0.00 0.00 0.00 4.35
2228 2278 3.198853 AGAGGGAGTAACAATCAGCCTTC 59.801 47.826 0.00 0.00 0.00 3.46
2229 2279 3.185455 AGGGAGTAACAATCAGCCTTCT 58.815 45.455 0.00 0.00 0.00 2.85
2230 2280 3.198853 AGGGAGTAACAATCAGCCTTCTC 59.801 47.826 0.00 0.00 0.00 2.87
2231 2281 3.055094 GGGAGTAACAATCAGCCTTCTCA 60.055 47.826 0.00 0.00 0.00 3.27
2232 2282 4.565652 GGGAGTAACAATCAGCCTTCTCAA 60.566 45.833 0.00 0.00 0.00 3.02
2233 2283 4.393371 GGAGTAACAATCAGCCTTCTCAAC 59.607 45.833 0.00 0.00 0.00 3.18
2234 2284 5.234466 AGTAACAATCAGCCTTCTCAACT 57.766 39.130 0.00 0.00 0.00 3.16
2235 2285 5.241662 AGTAACAATCAGCCTTCTCAACTC 58.758 41.667 0.00 0.00 0.00 3.01
2236 2286 3.064900 ACAATCAGCCTTCTCAACTCC 57.935 47.619 0.00 0.00 0.00 3.85
2237 2287 2.290577 ACAATCAGCCTTCTCAACTCCC 60.291 50.000 0.00 0.00 0.00 4.30
2238 2288 0.915364 ATCAGCCTTCTCAACTCCCC 59.085 55.000 0.00 0.00 0.00 4.81
2239 2289 0.473694 TCAGCCTTCTCAACTCCCCA 60.474 55.000 0.00 0.00 0.00 4.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 7.361713 GCCGCATTATATATTTGTGGAAGCTTA 60.362 37.037 22.60 0.00 42.37 3.09
4 5 5.106157 GCCGCATTATATATTTGTGGAAGCT 60.106 40.000 22.60 0.00 42.37 3.74
5 6 5.095490 GCCGCATTATATATTTGTGGAAGC 58.905 41.667 22.60 10.33 42.37 3.86
6 7 6.252967 TGCCGCATTATATATTTGTGGAAG 57.747 37.500 22.60 6.02 42.37 3.46
7 8 6.641169 TTGCCGCATTATATATTTGTGGAA 57.359 33.333 22.60 14.60 42.37 3.53
8 9 6.641169 TTTGCCGCATTATATATTTGTGGA 57.359 33.333 22.60 11.14 42.37 4.02
9 10 7.651304 TCTTTTTGCCGCATTATATATTTGTGG 59.349 33.333 17.47 17.47 42.59 4.17
10 11 8.479280 GTCTTTTTGCCGCATTATATATTTGTG 58.521 33.333 0.00 0.00 0.00 3.33
11 12 8.194104 TGTCTTTTTGCCGCATTATATATTTGT 58.806 29.630 0.00 0.00 0.00 2.83
12 13 8.479280 GTGTCTTTTTGCCGCATTATATATTTG 58.521 33.333 0.00 0.00 0.00 2.32
13 14 8.194104 TGTGTCTTTTTGCCGCATTATATATTT 58.806 29.630 0.00 0.00 0.00 1.40
14 15 7.711846 TGTGTCTTTTTGCCGCATTATATATT 58.288 30.769 0.00 0.00 0.00 1.28
15 16 7.270757 TGTGTCTTTTTGCCGCATTATATAT 57.729 32.000 0.00 0.00 0.00 0.86
16 17 6.685527 TGTGTCTTTTTGCCGCATTATATA 57.314 33.333 0.00 0.00 0.00 0.86
17 18 5.574891 TGTGTCTTTTTGCCGCATTATAT 57.425 34.783 0.00 0.00 0.00 0.86
18 19 5.378292 TTGTGTCTTTTTGCCGCATTATA 57.622 34.783 0.00 0.00 0.00 0.98
19 20 3.932545 TGTGTCTTTTTGCCGCATTAT 57.067 38.095 0.00 0.00 0.00 1.28
20 21 3.717400 TTGTGTCTTTTTGCCGCATTA 57.283 38.095 0.00 0.00 0.00 1.90
21 22 2.593346 TTGTGTCTTTTTGCCGCATT 57.407 40.000 0.00 0.00 0.00 3.56
22 23 2.593346 TTTGTGTCTTTTTGCCGCAT 57.407 40.000 0.00 0.00 0.00 4.73
23 24 2.370281 TTTTGTGTCTTTTTGCCGCA 57.630 40.000 0.00 0.00 0.00 5.69
55 56 5.184864 TCACATCTGTTTGTGGTCTGTTTTT 59.815 36.000 11.54 0.00 45.63 1.94
56 57 4.704540 TCACATCTGTTTGTGGTCTGTTTT 59.295 37.500 11.54 0.00 45.63 2.43
57 58 4.096382 GTCACATCTGTTTGTGGTCTGTTT 59.904 41.667 11.54 0.00 45.63 2.83
58 59 3.627577 GTCACATCTGTTTGTGGTCTGTT 59.372 43.478 11.54 0.00 45.63 3.16
59 60 3.206150 GTCACATCTGTTTGTGGTCTGT 58.794 45.455 11.54 0.00 45.63 3.41
60 61 3.205338 TGTCACATCTGTTTGTGGTCTG 58.795 45.455 11.54 0.00 45.63 3.51
61 62 3.558931 TGTCACATCTGTTTGTGGTCT 57.441 42.857 11.54 0.00 45.63 3.85
62 63 5.470098 AGTTATGTCACATCTGTTTGTGGTC 59.530 40.000 0.00 7.57 45.63 4.02
63 64 5.376625 AGTTATGTCACATCTGTTTGTGGT 58.623 37.500 0.00 4.24 45.63 4.16
64 65 5.947228 AGTTATGTCACATCTGTTTGTGG 57.053 39.130 0.00 0.00 45.63 4.17
65 66 8.032952 ACATAGTTATGTCACATCTGTTTGTG 57.967 34.615 0.00 7.02 42.96 3.33
103 104 3.054287 TGTTCAAGGGTTTGTGTAGGACA 60.054 43.478 0.00 0.00 35.73 4.02
104 105 3.547746 TGTTCAAGGGTTTGTGTAGGAC 58.452 45.455 0.00 0.00 35.73 3.85
105 106 3.935818 TGTTCAAGGGTTTGTGTAGGA 57.064 42.857 0.00 0.00 35.73 2.94
106 107 5.529581 AAATGTTCAAGGGTTTGTGTAGG 57.470 39.130 0.00 0.00 35.73 3.18
107 108 7.264947 AGAAAAATGTTCAAGGGTTTGTGTAG 58.735 34.615 0.00 0.00 35.73 2.74
108 109 7.176589 AGAAAAATGTTCAAGGGTTTGTGTA 57.823 32.000 0.00 0.00 35.73 2.90
109 110 6.048732 AGAAAAATGTTCAAGGGTTTGTGT 57.951 33.333 0.00 0.00 35.73 3.72
110 111 5.231991 CGAGAAAAATGTTCAAGGGTTTGTG 59.768 40.000 0.00 0.00 35.73 3.33
111 112 5.126384 TCGAGAAAAATGTTCAAGGGTTTGT 59.874 36.000 0.00 0.00 35.73 2.83
112 113 5.458779 GTCGAGAAAAATGTTCAAGGGTTTG 59.541 40.000 0.00 0.00 35.57 2.93
113 114 5.126384 TGTCGAGAAAAATGTTCAAGGGTTT 59.874 36.000 0.00 0.00 0.00 3.27
114 115 4.642885 TGTCGAGAAAAATGTTCAAGGGTT 59.357 37.500 0.00 0.00 0.00 4.11
115 116 4.204012 TGTCGAGAAAAATGTTCAAGGGT 58.796 39.130 0.00 0.00 0.00 4.34
116 117 4.320494 CCTGTCGAGAAAAATGTTCAAGGG 60.320 45.833 0.00 0.00 0.00 3.95
117 118 4.515191 TCCTGTCGAGAAAAATGTTCAAGG 59.485 41.667 0.00 0.00 0.00 3.61
118 119 5.007626 TGTCCTGTCGAGAAAAATGTTCAAG 59.992 40.000 0.00 0.00 0.00 3.02
131 132 4.188247 TGTTAGGATTTGTCCTGTCGAG 57.812 45.455 7.23 0.00 40.93 4.04
138 140 4.038642 TGCCTTGTTTGTTAGGATTTGTCC 59.961 41.667 0.00 0.00 33.13 4.02
186 190 9.495754 GATTAATTCGAAGATGTTCTCAAAAGG 57.504 33.333 3.35 0.00 35.04 3.11
261 293 8.600625 GCTGATTCACATTAATTAGAACACGTA 58.399 33.333 0.00 0.00 0.00 3.57
264 296 7.912250 CCAGCTGATTCACATTAATTAGAACAC 59.088 37.037 17.39 2.09 0.00 3.32
280 312 0.685458 ACCCAATGGCCAGCTGATTC 60.685 55.000 17.39 4.59 33.59 2.52
315 347 6.736853 GCGCAGAAGTTAACATAAAACTGTAG 59.263 38.462 8.61 7.35 37.26 2.74
367 406 3.692101 CCGGCTGAACATACAATAACCAA 59.308 43.478 0.00 0.00 0.00 3.67
430 469 2.069273 GAGTCGATGAGGTTGTTGGTG 58.931 52.381 0.00 0.00 0.00 4.17
502 541 1.295423 GCCCTTGAAGTAGACCGCA 59.705 57.895 0.00 0.00 0.00 5.69
558 597 4.966787 GCCGGTGGAACTTGCCCA 62.967 66.667 1.90 0.00 36.74 5.36
606 645 1.920574 CATGGTCTTTGAGCTCGTACG 59.079 52.381 9.53 9.53 0.00 3.67
617 656 2.936993 GCACGAGATGGACATGGTCTTT 60.937 50.000 0.00 0.00 32.47 2.52
680 719 1.136828 CCCCTCGTTCATATTCCCCA 58.863 55.000 0.00 0.00 0.00 4.96
726 773 4.329545 TTGACAGAGGTGGCCCGC 62.330 66.667 0.00 0.00 35.12 6.13
738 785 3.059982 CCCAGAGGCGTCTTGACA 58.940 61.111 6.10 0.00 0.00 3.58
762 809 1.746615 CATGGAGAACTGGGTGGCG 60.747 63.158 0.00 0.00 0.00 5.69
888 935 1.928868 ACTTGGGGAGCTTGATTTGG 58.071 50.000 0.00 0.00 0.00 3.28
897 944 1.376037 CACCTCGAACTTGGGGAGC 60.376 63.158 0.00 0.00 0.00 4.70
957 1004 2.125350 GAGAAGGGCAGCGTGAGG 60.125 66.667 0.00 0.00 0.00 3.86
1022 1069 3.234630 TTGGTCAGGAAGGTCGGCG 62.235 63.158 0.00 0.00 0.00 6.46
1155 1202 2.448926 TGATGAACGTGAACGGATGT 57.551 45.000 7.86 0.00 44.95 3.06
1188 1235 0.736325 CGAACACGATCACCCCTGAC 60.736 60.000 0.00 0.00 0.00 3.51
1223 1270 1.555075 GTGATCACTTGCAGGTAGGGA 59.445 52.381 18.83 0.00 0.00 4.20
1254 1301 4.681483 GCAAAAAGAAATAGTCTGCGCTTT 59.319 37.500 9.73 0.00 36.40 3.51
1276 1323 5.005971 TGCGGTCGATTTAAGTTTAGTATGC 59.994 40.000 0.00 0.00 0.00 3.14
1277 1324 6.578020 TGCGGTCGATTTAAGTTTAGTATG 57.422 37.500 0.00 0.00 0.00 2.39
1278 1325 7.781548 AATGCGGTCGATTTAAGTTTAGTAT 57.218 32.000 0.00 0.00 0.00 2.12
1279 1326 7.758980 TGTAATGCGGTCGATTTAAGTTTAGTA 59.241 33.333 0.00 0.00 0.00 1.82
1280 1327 6.591062 TGTAATGCGGTCGATTTAAGTTTAGT 59.409 34.615 0.00 0.00 0.00 2.24
1281 1328 6.996106 TGTAATGCGGTCGATTTAAGTTTAG 58.004 36.000 0.00 0.00 0.00 1.85
1282 1329 6.964741 TGTAATGCGGTCGATTTAAGTTTA 57.035 33.333 0.00 0.00 0.00 2.01
1283 1330 5.866335 TGTAATGCGGTCGATTTAAGTTT 57.134 34.783 0.00 0.00 0.00 2.66
1308 1356 8.357290 TCACCATCAATTCAGATTTCAGAAAT 57.643 30.769 8.20 8.20 0.00 2.17
1364 1412 7.491372 CCAGTTACTAGCATCAACGAAGAAATA 59.509 37.037 0.00 0.00 0.00 1.40
1365 1413 6.313905 CCAGTTACTAGCATCAACGAAGAAAT 59.686 38.462 0.00 0.00 0.00 2.17
1398 1446 5.449304 GTCTGTAATGTTGTTGCCTAACAC 58.551 41.667 0.00 0.00 45.91 3.32
1416 1464 1.525995 CGGTGTTTGCTGGGTCTGT 60.526 57.895 0.00 0.00 0.00 3.41
1420 1468 1.101049 CAAGTCGGTGTTTGCTGGGT 61.101 55.000 0.00 0.00 0.00 4.51
1436 1484 3.506067 GTCCTGTGTTTACCCCATTCAAG 59.494 47.826 0.00 0.00 0.00 3.02
1437 1485 3.492337 GTCCTGTGTTTACCCCATTCAA 58.508 45.455 0.00 0.00 0.00 2.69
1443 1491 1.673337 GGCGTCCTGTGTTTACCCC 60.673 63.158 0.00 0.00 0.00 4.95
1448 1496 0.467290 ACCAATGGCGTCCTGTGTTT 60.467 50.000 0.00 0.00 0.00 2.83
1509 1557 3.657398 TGTTATGAGACGGAGGGAGTA 57.343 47.619 0.00 0.00 0.00 2.59
1510 1558 2.526888 TGTTATGAGACGGAGGGAGT 57.473 50.000 0.00 0.00 0.00 3.85
1511 1559 4.827835 TCTTATGTTATGAGACGGAGGGAG 59.172 45.833 0.00 0.00 0.00 4.30
1512 1560 4.800023 TCTTATGTTATGAGACGGAGGGA 58.200 43.478 0.00 0.00 0.00 4.20
1513 1561 4.559704 GCTCTTATGTTATGAGACGGAGGG 60.560 50.000 0.00 0.00 33.20 4.30
1514 1562 4.551388 GCTCTTATGTTATGAGACGGAGG 58.449 47.826 0.00 0.00 33.20 4.30
1515 1563 4.222886 CGCTCTTATGTTATGAGACGGAG 58.777 47.826 0.00 0.00 33.20 4.63
1516 1564 3.630769 ACGCTCTTATGTTATGAGACGGA 59.369 43.478 0.00 0.00 35.72 4.69
1517 1565 3.966154 ACGCTCTTATGTTATGAGACGG 58.034 45.455 0.00 0.00 35.72 4.79
1518 1566 5.950965 AAACGCTCTTATGTTATGAGACG 57.049 39.130 0.00 0.00 36.53 4.18
1519 1567 7.688578 GTCAAAAACGCTCTTATGTTATGAGAC 59.311 37.037 0.00 0.00 33.20 3.36
1520 1568 7.386573 TGTCAAAAACGCTCTTATGTTATGAGA 59.613 33.333 0.00 0.00 33.20 3.27
1521 1569 7.478667 GTGTCAAAAACGCTCTTATGTTATGAG 59.521 37.037 0.00 0.00 35.42 2.90
1522 1570 7.172532 AGTGTCAAAAACGCTCTTATGTTATGA 59.827 33.333 0.00 0.00 45.69 2.15
1523 1571 7.269084 CAGTGTCAAAAACGCTCTTATGTTATG 59.731 37.037 0.00 0.00 45.69 1.90
1524 1572 7.298122 CAGTGTCAAAAACGCTCTTATGTTAT 58.702 34.615 0.00 0.00 45.69 1.89
1525 1573 6.655062 CAGTGTCAAAAACGCTCTTATGTTA 58.345 36.000 0.00 0.00 45.69 2.41
1526 1574 5.510671 CAGTGTCAAAAACGCTCTTATGTT 58.489 37.500 0.00 0.00 45.69 2.71
1527 1575 4.554723 GCAGTGTCAAAAACGCTCTTATGT 60.555 41.667 0.00 0.00 45.69 2.29
1528 1576 3.908382 GCAGTGTCAAAAACGCTCTTATG 59.092 43.478 0.00 0.00 45.69 1.90
1529 1577 3.563808 TGCAGTGTCAAAAACGCTCTTAT 59.436 39.130 0.00 0.00 45.69 1.73
1530 1578 2.939756 TGCAGTGTCAAAAACGCTCTTA 59.060 40.909 0.00 0.00 45.69 2.10
1531 1579 1.742831 TGCAGTGTCAAAAACGCTCTT 59.257 42.857 0.00 0.00 45.69 2.85
1532 1580 1.064060 GTGCAGTGTCAAAAACGCTCT 59.936 47.619 0.00 0.00 45.69 4.09
1533 1581 1.466855 GTGCAGTGTCAAAAACGCTC 58.533 50.000 0.00 0.00 45.69 5.03
1535 1583 0.247894 TCGTGCAGTGTCAAAAACGC 60.248 50.000 0.00 0.00 38.74 4.84
1536 1584 1.594518 CCTCGTGCAGTGTCAAAAACG 60.595 52.381 0.00 0.00 0.00 3.60
1537 1585 1.268539 CCCTCGTGCAGTGTCAAAAAC 60.269 52.381 0.00 0.00 0.00 2.43
1538 1586 1.021202 CCCTCGTGCAGTGTCAAAAA 58.979 50.000 0.00 0.00 0.00 1.94
1539 1587 0.179234 TCCCTCGTGCAGTGTCAAAA 59.821 50.000 0.00 0.00 0.00 2.44
1540 1588 0.249868 CTCCCTCGTGCAGTGTCAAA 60.250 55.000 0.00 0.00 0.00 2.69
1541 1589 1.367471 CTCCCTCGTGCAGTGTCAA 59.633 57.895 0.00 0.00 0.00 3.18
1542 1590 0.538746 TACTCCCTCGTGCAGTGTCA 60.539 55.000 0.00 0.00 0.00 3.58
1543 1591 0.171455 CTACTCCCTCGTGCAGTGTC 59.829 60.000 0.00 0.00 0.00 3.67
1544 1592 0.539901 ACTACTCCCTCGTGCAGTGT 60.540 55.000 0.00 0.00 0.00 3.55
1545 1593 0.603569 AACTACTCCCTCGTGCAGTG 59.396 55.000 0.00 0.00 0.00 3.66
1546 1594 1.000955 CAAACTACTCCCTCGTGCAGT 59.999 52.381 0.00 0.00 0.00 4.40
1547 1595 1.714794 CAAACTACTCCCTCGTGCAG 58.285 55.000 0.00 0.00 0.00 4.41
1548 1596 0.320421 GCAAACTACTCCCTCGTGCA 60.320 55.000 0.00 0.00 0.00 4.57
1549 1597 0.320421 TGCAAACTACTCCCTCGTGC 60.320 55.000 0.00 0.00 0.00 5.34
1550 1598 2.069273 CTTGCAAACTACTCCCTCGTG 58.931 52.381 0.00 0.00 0.00 4.35
1551 1599 1.692519 ACTTGCAAACTACTCCCTCGT 59.307 47.619 0.00 0.00 0.00 4.18
1552 1600 2.457366 ACTTGCAAACTACTCCCTCG 57.543 50.000 0.00 0.00 0.00 4.63
1553 1601 2.737252 CGAACTTGCAAACTACTCCCTC 59.263 50.000 0.00 0.00 0.00 4.30
1554 1602 2.367567 TCGAACTTGCAAACTACTCCCT 59.632 45.455 0.00 0.00 0.00 4.20
1555 1603 2.762745 TCGAACTTGCAAACTACTCCC 58.237 47.619 0.00 0.00 0.00 4.30
1556 1604 4.056050 TCTTCGAACTTGCAAACTACTCC 58.944 43.478 0.00 0.00 0.00 3.85
1557 1605 5.652744 TTCTTCGAACTTGCAAACTACTC 57.347 39.130 0.00 0.00 0.00 2.59
1558 1606 6.619801 AATTCTTCGAACTTGCAAACTACT 57.380 33.333 0.00 0.00 0.00 2.57
1559 1607 8.679385 GTTTAATTCTTCGAACTTGCAAACTAC 58.321 33.333 0.00 0.00 0.00 2.73
1565 1613 7.022055 TCTTGTTTAATTCTTCGAACTTGCA 57.978 32.000 0.00 0.00 0.00 4.08
1573 1621 9.530129 GTCACTAACATCTTGTTTAATTCTTCG 57.470 33.333 0.00 0.00 41.45 3.79
1582 1630 8.506168 TTCTTCTTGTCACTAACATCTTGTTT 57.494 30.769 0.00 0.00 41.45 2.83
1604 1652 7.776969 ACATACAGCACTTGATAATTCCATTCT 59.223 33.333 0.00 0.00 0.00 2.40
1608 1656 8.978874 ATAACATACAGCACTTGATAATTCCA 57.021 30.769 0.00 0.00 0.00 3.53
1663 1711 3.562557 ACCGTATGAAAAACTGAACGCTT 59.437 39.130 0.00 0.00 0.00 4.68
1672 1720 9.321590 GTACTATTTTGACACCGTATGAAAAAC 57.678 33.333 0.00 0.00 33.37 2.43
1685 1734 4.091549 ACCGAGGGAGTACTATTTTGACA 58.908 43.478 0.00 0.00 0.00 3.58
1689 1738 4.607239 TGAGACCGAGGGAGTACTATTTT 58.393 43.478 0.00 0.00 0.00 1.82
1698 1747 4.827835 TCTTACATTATGAGACCGAGGGAG 59.172 45.833 0.00 0.00 0.00 4.30
1699 1748 4.800023 TCTTACATTATGAGACCGAGGGA 58.200 43.478 0.00 0.00 0.00 4.20
1700 1749 5.478679 AGATCTTACATTATGAGACCGAGGG 59.521 44.000 0.00 0.00 0.00 4.30
1701 1750 6.582677 AGATCTTACATTATGAGACCGAGG 57.417 41.667 0.00 0.00 0.00 4.63
1702 1751 8.879342 AAAAGATCTTACATTATGAGACCGAG 57.121 34.615 8.75 0.00 0.00 4.63
1703 1752 9.314321 GAAAAAGATCTTACATTATGAGACCGA 57.686 33.333 8.75 0.00 0.00 4.69
1704 1753 9.319143 AGAAAAAGATCTTACATTATGAGACCG 57.681 33.333 8.75 0.00 0.00 4.79
1715 1764 9.698309 CAGTAGAGTCAAGAAAAAGATCTTACA 57.302 33.333 8.75 0.00 37.56 2.41
1716 1765 8.652463 GCAGTAGAGTCAAGAAAAAGATCTTAC 58.348 37.037 8.75 1.12 37.56 2.34
1717 1766 8.367911 TGCAGTAGAGTCAAGAAAAAGATCTTA 58.632 33.333 8.75 0.00 37.56 2.10
1718 1767 7.220030 TGCAGTAGAGTCAAGAAAAAGATCTT 58.780 34.615 0.88 0.88 40.23 2.40
1719 1768 6.763355 TGCAGTAGAGTCAAGAAAAAGATCT 58.237 36.000 0.00 0.00 0.00 2.75
1720 1769 7.608308 ATGCAGTAGAGTCAAGAAAAAGATC 57.392 36.000 0.00 0.00 0.00 2.75
1721 1770 7.276658 CGTATGCAGTAGAGTCAAGAAAAAGAT 59.723 37.037 0.00 0.00 0.00 2.40
1722 1771 6.586463 CGTATGCAGTAGAGTCAAGAAAAAGA 59.414 38.462 0.00 0.00 0.00 2.52
1723 1772 6.670927 GCGTATGCAGTAGAGTCAAGAAAAAG 60.671 42.308 0.89 0.00 42.15 2.27
1724 1773 5.120208 GCGTATGCAGTAGAGTCAAGAAAAA 59.880 40.000 0.89 0.00 42.15 1.94
1725 1774 4.625742 GCGTATGCAGTAGAGTCAAGAAAA 59.374 41.667 0.89 0.00 42.15 2.29
1726 1775 4.174009 GCGTATGCAGTAGAGTCAAGAAA 58.826 43.478 0.89 0.00 42.15 2.52
1727 1776 3.770666 GCGTATGCAGTAGAGTCAAGAA 58.229 45.455 0.89 0.00 42.15 2.52
1728 1777 3.422417 GCGTATGCAGTAGAGTCAAGA 57.578 47.619 0.89 0.00 42.15 3.02
1742 1791 0.173029 TTGCCTGCCAAATGCGTATG 59.827 50.000 0.00 0.00 45.60 2.39
1769 1818 2.892852 ACAAGCTGCTAGGATTTGCAAA 59.107 40.909 15.44 15.44 38.81 3.68
1770 1819 2.517959 ACAAGCTGCTAGGATTTGCAA 58.482 42.857 0.90 0.00 38.81 4.08
1781 1831 1.691196 TTGTAGCCAAACAAGCTGCT 58.309 45.000 0.00 0.00 42.68 4.24
1787 1837 5.652014 CCTATTCTCCATTGTAGCCAAACAA 59.348 40.000 0.01 0.01 43.16 2.83
1808 1858 4.473559 CCACCTCTAAACTTCCATTCCCTA 59.526 45.833 0.00 0.00 0.00 3.53
1844 1894 2.738743 ACCAACTTCCCATGCCTAATG 58.261 47.619 0.00 0.00 35.89 1.90
1858 1908 4.165372 TGGGTTTGAGACTAAGAACCAACT 59.835 41.667 13.22 0.00 42.55 3.16
1866 1916 8.110860 ACAATAAACATGGGTTTGAGACTAAG 57.889 34.615 0.00 0.00 46.33 2.18
1878 1928 6.537453 TTCCCAACATACAATAAACATGGG 57.463 37.500 0.00 0.00 46.13 4.00
1890 1940 6.742559 TCCTCCTACTAATTCCCAACATAC 57.257 41.667 0.00 0.00 0.00 2.39
1897 1947 9.286170 GATGTTAAATTCCTCCTACTAATTCCC 57.714 37.037 0.00 0.00 0.00 3.97
1916 1966 6.768861 CCGTATTAATTCAGGTGGGATGTTAA 59.231 38.462 0.00 0.00 0.00 2.01
1937 1987 2.027100 TCTCTTCTGTGCTCTCTCCGTA 60.027 50.000 0.00 0.00 0.00 4.02
1939 1989 1.458398 TCTCTTCTGTGCTCTCTCCG 58.542 55.000 0.00 0.00 0.00 4.63
1950 2000 5.389520 TGGAGGGAGTACATATCTCTTCTG 58.610 45.833 0.00 0.00 33.06 3.02
1965 2015 5.008712 GCGGACTAAATAAAAATGGAGGGAG 59.991 44.000 0.00 0.00 0.00 4.30
1966 2016 4.885325 GCGGACTAAATAAAAATGGAGGGA 59.115 41.667 0.00 0.00 0.00 4.20
1967 2017 4.642885 TGCGGACTAAATAAAAATGGAGGG 59.357 41.667 0.00 0.00 0.00 4.30
1968 2018 5.828299 TGCGGACTAAATAAAAATGGAGG 57.172 39.130 0.00 0.00 0.00 4.30
1971 2021 9.341899 GCTAATATGCGGACTAAATAAAAATGG 57.658 33.333 0.00 0.00 0.00 3.16
1975 2025 9.944663 CAAAGCTAATATGCGGACTAAATAAAA 57.055 29.630 0.00 0.00 38.13 1.52
1976 2026 8.564574 CCAAAGCTAATATGCGGACTAAATAAA 58.435 33.333 0.00 0.00 38.13 1.40
1977 2027 7.717875 ACCAAAGCTAATATGCGGACTAAATAA 59.282 33.333 0.00 0.00 38.13 1.40
1978 2028 7.221450 ACCAAAGCTAATATGCGGACTAAATA 58.779 34.615 0.00 0.00 38.13 1.40
1979 2029 6.062095 ACCAAAGCTAATATGCGGACTAAAT 58.938 36.000 0.00 0.00 38.13 1.40
1980 2030 5.433526 ACCAAAGCTAATATGCGGACTAAA 58.566 37.500 0.00 0.00 38.13 1.85
1981 2031 5.031066 ACCAAAGCTAATATGCGGACTAA 57.969 39.130 0.00 0.00 38.13 2.24
1982 2032 4.100344 TGACCAAAGCTAATATGCGGACTA 59.900 41.667 0.00 0.00 38.13 2.59
1983 2033 3.118408 TGACCAAAGCTAATATGCGGACT 60.118 43.478 0.00 0.00 38.13 3.85
1984 2034 3.202906 TGACCAAAGCTAATATGCGGAC 58.797 45.455 0.00 0.00 38.13 4.79
1985 2035 3.552132 TGACCAAAGCTAATATGCGGA 57.448 42.857 0.00 0.00 38.13 5.54
1986 2036 4.601019 CTTTGACCAAAGCTAATATGCGG 58.399 43.478 9.25 0.00 40.94 5.69
2072 2122 9.733556 TGCATTCGGTAATAAATCTAATGGTAT 57.266 29.630 0.00 0.00 0.00 2.73
2073 2123 8.995220 GTGCATTCGGTAATAAATCTAATGGTA 58.005 33.333 0.00 0.00 0.00 3.25
2074 2124 7.719633 AGTGCATTCGGTAATAAATCTAATGGT 59.280 33.333 0.00 0.00 0.00 3.55
2075 2125 8.099364 AGTGCATTCGGTAATAAATCTAATGG 57.901 34.615 0.00 0.00 0.00 3.16
2076 2126 9.950680 AAAGTGCATTCGGTAATAAATCTAATG 57.049 29.630 0.00 0.00 0.00 1.90
2078 2128 9.168451 TGAAAGTGCATTCGGTAATAAATCTAA 57.832 29.630 0.00 0.00 31.80 2.10
2079 2129 8.609176 GTGAAAGTGCATTCGGTAATAAATCTA 58.391 33.333 0.00 0.00 31.80 1.98
2080 2130 7.120579 TGTGAAAGTGCATTCGGTAATAAATCT 59.879 33.333 0.00 0.00 31.80 2.40
2081 2131 7.247728 TGTGAAAGTGCATTCGGTAATAAATC 58.752 34.615 0.00 0.00 31.80 2.17
2082 2132 7.151999 TGTGAAAGTGCATTCGGTAATAAAT 57.848 32.000 0.00 0.00 31.80 1.40
2083 2133 6.561737 TGTGAAAGTGCATTCGGTAATAAA 57.438 33.333 0.00 0.00 31.80 1.40
2084 2134 6.372937 TGATGTGAAAGTGCATTCGGTAATAA 59.627 34.615 0.00 0.00 31.80 1.40
2085 2135 5.877564 TGATGTGAAAGTGCATTCGGTAATA 59.122 36.000 0.00 0.00 31.80 0.98
2086 2136 4.699735 TGATGTGAAAGTGCATTCGGTAAT 59.300 37.500 0.00 0.00 31.80 1.89
2087 2137 4.068599 TGATGTGAAAGTGCATTCGGTAA 58.931 39.130 0.00 0.00 31.80 2.85
2088 2138 3.669536 TGATGTGAAAGTGCATTCGGTA 58.330 40.909 0.00 0.00 31.80 4.02
2089 2139 2.503331 TGATGTGAAAGTGCATTCGGT 58.497 42.857 0.00 0.00 31.80 4.69
2090 2140 3.770263 ATGATGTGAAAGTGCATTCGG 57.230 42.857 0.00 0.00 31.80 4.30
2091 2141 7.412137 TCTATATGATGTGAAAGTGCATTCG 57.588 36.000 0.00 0.00 31.80 3.34
2171 2221 5.807520 ACTATGCACATTAGAGTTGACGAAG 59.192 40.000 0.00 0.00 0.00 3.79
2172 2222 5.720202 ACTATGCACATTAGAGTTGACGAA 58.280 37.500 0.00 0.00 0.00 3.85
2173 2223 5.324784 ACTATGCACATTAGAGTTGACGA 57.675 39.130 0.00 0.00 0.00 4.20
2174 2224 7.520119 TTTACTATGCACATTAGAGTTGACG 57.480 36.000 0.00 0.00 0.00 4.35
2185 2235 8.686334 CCCTCTGTTTTTATTTACTATGCACAT 58.314 33.333 0.00 0.00 0.00 3.21
2186 2236 7.885922 TCCCTCTGTTTTTATTTACTATGCACA 59.114 33.333 0.00 0.00 0.00 4.57
2187 2237 8.276252 TCCCTCTGTTTTTATTTACTATGCAC 57.724 34.615 0.00 0.00 0.00 4.57
2188 2238 8.107095 ACTCCCTCTGTTTTTATTTACTATGCA 58.893 33.333 0.00 0.00 0.00 3.96
2189 2239 8.507524 ACTCCCTCTGTTTTTATTTACTATGC 57.492 34.615 0.00 0.00 0.00 3.14
2193 2243 9.856162 TTGTTACTCCCTCTGTTTTTATTTACT 57.144 29.630 0.00 0.00 0.00 2.24
2196 2246 9.362151 TGATTGTTACTCCCTCTGTTTTTATTT 57.638 29.630 0.00 0.00 0.00 1.40
2197 2247 8.934023 TGATTGTTACTCCCTCTGTTTTTATT 57.066 30.769 0.00 0.00 0.00 1.40
2198 2248 7.121315 GCTGATTGTTACTCCCTCTGTTTTTAT 59.879 37.037 0.00 0.00 0.00 1.40
2199 2249 6.430000 GCTGATTGTTACTCCCTCTGTTTTTA 59.570 38.462 0.00 0.00 0.00 1.52
2200 2250 5.241728 GCTGATTGTTACTCCCTCTGTTTTT 59.758 40.000 0.00 0.00 0.00 1.94
2201 2251 4.762251 GCTGATTGTTACTCCCTCTGTTTT 59.238 41.667 0.00 0.00 0.00 2.43
2202 2252 4.327680 GCTGATTGTTACTCCCTCTGTTT 58.672 43.478 0.00 0.00 0.00 2.83
2203 2253 3.307762 GGCTGATTGTTACTCCCTCTGTT 60.308 47.826 0.00 0.00 0.00 3.16
2204 2254 2.237392 GGCTGATTGTTACTCCCTCTGT 59.763 50.000 0.00 0.00 0.00 3.41
2205 2255 2.503356 AGGCTGATTGTTACTCCCTCTG 59.497 50.000 0.00 0.00 0.00 3.35
2206 2256 2.839228 AGGCTGATTGTTACTCCCTCT 58.161 47.619 0.00 0.00 0.00 3.69
2207 2257 3.198853 AGAAGGCTGATTGTTACTCCCTC 59.801 47.826 0.00 0.00 0.00 4.30
2208 2258 3.185455 AGAAGGCTGATTGTTACTCCCT 58.815 45.455 0.00 0.00 0.00 4.20
2209 2259 3.055094 TGAGAAGGCTGATTGTTACTCCC 60.055 47.826 0.00 0.00 0.00 4.30
2210 2260 4.207891 TGAGAAGGCTGATTGTTACTCC 57.792 45.455 0.00 0.00 0.00 3.85
2211 2261 5.241662 AGTTGAGAAGGCTGATTGTTACTC 58.758 41.667 0.00 0.00 0.00 2.59
2212 2262 5.234466 AGTTGAGAAGGCTGATTGTTACT 57.766 39.130 0.00 0.00 0.00 2.24
2213 2263 4.393371 GGAGTTGAGAAGGCTGATTGTTAC 59.607 45.833 0.00 0.00 0.00 2.50
2214 2264 4.565652 GGGAGTTGAGAAGGCTGATTGTTA 60.566 45.833 0.00 0.00 0.00 2.41
2215 2265 3.416156 GGAGTTGAGAAGGCTGATTGTT 58.584 45.455 0.00 0.00 0.00 2.83
2216 2266 2.290577 GGGAGTTGAGAAGGCTGATTGT 60.291 50.000 0.00 0.00 0.00 2.71
2217 2267 2.363683 GGGAGTTGAGAAGGCTGATTG 58.636 52.381 0.00 0.00 0.00 2.67
2218 2268 1.283321 GGGGAGTTGAGAAGGCTGATT 59.717 52.381 0.00 0.00 0.00 2.57
2219 2269 0.915364 GGGGAGTTGAGAAGGCTGAT 59.085 55.000 0.00 0.00 0.00 2.90
2220 2270 0.473694 TGGGGAGTTGAGAAGGCTGA 60.474 55.000 0.00 0.00 0.00 4.26
2221 2271 2.069776 TGGGGAGTTGAGAAGGCTG 58.930 57.895 0.00 0.00 0.00 4.85
2222 2272 4.668925 TGGGGAGTTGAGAAGGCT 57.331 55.556 0.00 0.00 0.00 4.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.