>input_sequence_86175
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------ATGTACAAGCAGGACGACGGGCCGCCGACCTTCCTGACCAAGATTGCGCACAAGGCGATCATCAAGGTGAATGA
GGAAGGGACCGAGGCGGCTGCGGTCATGACGGCCTTGCGTGGCGGCGGACCAATGCCGGACCATGTGGAGTTCATCGCTG
AACATCCGTTCACGTTCATCATCATGGAGGAGCGGTCAGGGGTGATCGTGTTCGCCGGCCACGTCCTCGTCCCTACCTGC
AAGTGA--------------------------------------------------------------------------
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>chr1A_1_TraesCS1A01G092600
TTTAAGCTTCCACAAATATATAATGCGGCAAAAAGACACAAAAAAATTAGGACAAAAAAACAGACCACAAACAGATGTGA
CATAACTATGTCACATCTAGATGTGTCCTACACAAACCCTTGAACATTTTTC-TCGACAGGACAAATCCTAACAAACAAG
GCAACAATCTTCT-ATC-TTATTTATTTTCCTTTTGAGAACATCTTCGAATTAATCTTAATCAAATCATTAG--------
--------------------AAACAGTCTTCTAAACTTAATTTTTCTTTGAGTACGTGTTCTAATTAATGTGAATCAGCT
GGCCATTGGGTGAAAGAAACGTGTGTCTACAGTTTTATGTTAACTTCTGCGCATTTGATATAA-------ACTGAAATCA
TATCGTTGGTTATTGTATGTTCAGCCGGAGGAAGCAGTGGAGACGATCAACCGCTGGGTGAAGAAGGCCACCAACAACCT
CATCGACTCCATGATCTCACGCAGCGACATCACCGCCGACACCGACCTCGTGCTCGCCAATGCGGTCTACTTCAAGGGCA
GCTGGCTCAATCCCTTCAACGTTTGCCACACGTCATTGGGCAAGTTCCACCGGCTCGACGGCAGCCACGTCGAGGCAGCG
TTCACGTACGAGCTCAAAGACCATGTCCATCTCGTGCATGGACGGCTTCAAGGTACTCAAGCTCCCCTACGGCCCGGATG
GGGAATATGAACGA--------GGGGCTTCCCTACAAGATTTACCGTGGCCCGCGGGCCACCTCTGTCAAGACGCCTCTG
GGCGAGGACGCCACCCAGTTCTCCATGTTTGTCTTCCTCCCGGACGAGCGCGACGGCATGGCCACCATGGTGGACGTGAT
CACCGCGGCACCTGGGTACCTCTACAGCGTCCTGCCCACGGAAACCAAGCTAGTCCAAATCAAGCTCCCCAAGTTCGAGG
TGTCATTGGACTGGGACCTTGGGAGCGACCTCCGTCGGCTGGGCCTCACGCTGCCCTTCTCGCGGAAGGTGGGCGACCTG
CGAGGCATGTACAAGCAGGACGACGGGCCGCCGACCTTCCTGACCAAGATTGCGCACAAGGCGATCATCAAGGTGAATGA
GGAAGGGACCGAGGCGGCTGCGGTCATGACGGCCTTGCGTGGCGGCGGACCAATGCCGGACCATGTGGAGTTCATCGCTG
AACATCCGTTCACGTTCATCATCATGGAGGAGCGGTCAGGGGTGATCGTGTTCGCCGGCCACGTCCTCGTCCCTACCTGC
AAGTGATCACGTCGAGATCCAAAGCGCAGACTATTTCTTTTTGCATACTA-AACTTAAATCGACCGCATTACATTATTTC
TGAAATCTGAATTGATGGTGATGGGTCCTTTTGCTCTGCTCCTTGCTTTTCTATTTCTTCGTTGATGCTAGTAACTGGGG
GTTACGTGTTAGGCAACAACATTACAGACCCAGCAAACACCGACTTGAATGGGGTAAACACAGGACGCCATTGGTACCCT
TGCTTCACTACCTACTGACGGCGCCGTGGCAGTAGCTACTCCCTCCGTCTCATAACATAAGAGCGTTTTTGACACTGCAC
GAGGGAGTAGTTTGCAAGTTCGAAGAATTAAACAAGATGTTAGTGACAAGAAGAATGGAATTATCAAGTGCTGTATGTTA
TAATGTTACTGATCTGGTTCAGCTTGTGCTAAGCGTTCAGTTT-TTCATACGGTGTCAAAATAGTACTCCCTCGGTCTCA
TAATGTAAGATCTTTTTCTTGACTCTACTGCATACGCATTTGGCAGGCAACACTGCATTTGCAAAT-CCTAGCAGCTTGT
TTGGCTACAATGGAGAATAGGGAATGGAAGTTTAGAGGTGGAATTTATCAGGACATTAGGCATGGGAAGTTGGTTCTTAG
TCTCAAACCCATGTTTATTGTATGTTGGGAATTAGTAGGAGGAATTTAACATCCCACCTGAATTAATACGGAGAGAGCAC
AGAAGAGATATGTACTCCCTCCATTTTTATTTAGTCCGCATATTAGCTTTGGTCAAAGTCAACTTTGTAAACTTTAACAA
AGTTTAGAAACAAAAATATTAACATATACAATAACAAATCAATACCATTAGATTTATTACCGAATGCACTTTCACATCAT
ATAGATTTTTTATGATAAATATTTTTTTCTATAAACTTGATCAAATTTTATAAAGTTTGACTTCGTCAACTCTAATGTGC
ATAGTAAATAAAAACAGAGGGAGTAACAATCAGCCTTCTCAACTCCCCA
>chr1B_120
TTGAGCA-------------------------------------------------------------------------
-----------------------------------------------TTTTTTTCAACATGACAAATCCTAACAAACAAG
GCAACAATTTTCTAATC-TTATTTATTTTTC-TTTGAGAACATCTTCGAATTAATCTTAATCAAATCATTAGAAACAATT
CCCTCAAAAAAAATCATTAGAAACAATCTTCCAAACTTATTTTTTCTTTGAGAACATGTTCTAATTAATGTTAATCAGCT
GGCCATTGGGTGAAAGAAACATATGTTTACAGTTTTATGTTAACTTCTGCACATTTGGTATAAACTATAAACTGAGATCA
TATCGATGGTCATTGTATGTTCAGCCGGAGGAAGCAGTGGAAACGATCAACCGCTGGGTGAAGAAGGCGACCAACAACCT
CATCGACTCCATGATCTCACGCAGCGACATCACCGCCGACACCGACCTCGTGCTCGCCAACGCGGTCTACTTCAAGGGCA
GCTGGCTCAATCCCTTCAACGTTTGCCACACGTCATCGGGCGAGTTCCACCGGCTTGACGGCAGCCACGTA-AGGCAGCG
TTCATGTACGAGCTC-AAGACCATGTCCATCTCGTGCATGGACGGCTTCAAGGTCCTCAAGCTCCCGTACGGCCCGGACG
GGGAATATGAACCCGCCCCAGGGGGGCTTCCCTACAAGATCCACCGTGGCCCACGGGCCACCTCCGTCAAGACGCCTCTG
GGCGAGGATGCCACCCAGTTCTCCATGTTTGTCTTCCTCCCAGACGAGCGCGACGGCATGGCCACCATGGTGGACGTGAT
CACCGCGGCACCTGGGTACCTCTACAGCGTCCTGCCCACGGAAACCAAGCTAGTGCAAATCAACCTCCCCAAGTTCGAGG
TGTCATTGGACTGGGACCTTGGTAGTGACCTCCGTCGGCTGGGACTCACGCTGCCCTTCTCGCGGAAGGCGGGCGACCTG
CGAGGCATGTACAAGAAGGACGACGGGCGGCCGACCTTCCTGACCAAGGTTGCGCACAAGGCGATCATCAAGGTGAATGA
GGAAGGGACCGAGGCGGCTGCGGTCATGACGGCCTTGCGTGGCGGCGGACCAATGCCGGACCATGTGGAGTTCGTCGCCG
ACCATCCGTTCACGTTCATCATCATGGAGGAGCGCTCAGGGGTGATCGTGTTCGCCGGCCACGTCCTCGACCCTACCTGC
AAGTGATCACGTCGAGATCCCAAGCGCAGGCTATTTCTTTTTTGCGTACTGAACTTAAATCGACCATATTACGTTGTTTC
TGAAATCTGAATTGATGGTGATGGGTCCTTTTGCTCTGCTCCTTGCTTTTCGTTTTCTTCGTTGATACCAGTAACTGGGG
GTTACATGTTAGGCAACAACATTGCAGGCCCAGCAAACACCGAGGTGAATAGGGTTAACACAGGCCGCCATACGTACCCT
TGCTTCACTACCTACTGACGGCGCCGTGGCAGTAGC--------------------------------------------
-------TAGTTCGCAAGTTAAAAGAATTGAACAAGATGTTAGTGACAAGAGGAAGGGAACTATCAAGTACTGTATGTTA
TAATGTTACTGATCTGGTTCAGCTTGTGCTGAGCGTTCAATTTCTTCATACGGCGTCCAAATAGTAT-------------
---------------------------CTGTATACGCATTAGGTAGGCAACACTGCACATGCAAATCCCTGGCAGCGTGT
TTGGCTACAATGGAGAAAAGGGAATGGAAGTTTAGAGGTGGAATTTATCAGGAGATTAGGCATGGGAGGTTGGTTTTTAG
TCTCAAAACCATGTTTATTCTATGTT-GGAATTAGTAGGAGGAATCTAACATCCCACCTGAATTAACAGGGAGAGAGCAG
AGAAGAGATATGTA------------------------------------------------------------------
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>chr1D_120
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---------------------------------------TTGAACATTTTTTTTCGACATGACAAATCCTAACAAACAAG
GCAACAATCTTCTAGTTTTTATTTATTTTTC-TTTGAGAACGTCTTCGAATTAATCTTAATCAAATCATTAGAAACAAT-
---------------------------CTTCTAAACTTATTTTTTCTTTGAGAACATGTTCTAATTAATGTTAATCAGCT
GGCCATTGGGTGAAAGAAACGTGTGTTTACAGTTTCACGTAAACTTCTGCACATTTGGTATAAACTG--AACTGAAATCA
TATTGATGGTTACTGTATGTTCAGCCGGAGGAAGCAGTGGAGACGATCAACCGCTGGGTGAAGAAGGCGACCAACAACCT
CATCGACTCCATGATCTCACGCAGCGACATCACCGCCGACGCCAACCTCGTGCTCGCCAACGCGGTCTACTTCAAGGGCA
GCTGGCTCAATCCCTTCAACGTTTGCCACACGTCATCGGGCAAATTCCACCGGCTTGATGGGAGCCACGTCGAGGCAGCG
TTCATGTACGAGCTC-AAGACCATGTCCATCTCGTGCATAGACG------------------------------------
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>SNPs
--S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------S-------S--------------------
-----------------------------S-S------------------------------------------------
-------------------------S-------------S------------S--S---------------S--------
--------------------------S-----------------------S------S----------------------
-----S--------------------------------------------------------------S-----------
------------------------------------------------------------S-------------------
------------------------------------S------------------S------------------------
----S----------S--------------------------------------S-----------S-----------S-
------------SS--------------------------SS----------S-----------S---------------
--------S--------------------------------S--------------------------------------
------------------------------------------------------S--------S----------------
----------------------S--S-----------------S-------------------------S----------
---------------S------------S-------------------S-------------------------------
-------------------------------------------------------------------------S----S-
-S--------------------------------S----------------------------------S----------
--------------------S--------S------------SSSSSSSS---------------SS-----S--S----
---------------------------------------------------SS-------------S-S-----------
-----S-----------------S---S---------------SS-----S----S--------S------SS-------
------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS-----S-------SS-------S---------------------S---S----S--------S----------
------------------------------S--------S-------------S---S--------SSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSS---S---------S--S-------------SS-----------S-----S---
-----------------S-----------------------------------S-------------S-------S----
-------S-----------S------S------------------S--------------------S-S----------S
--------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_983
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---CATTGGACTGGGACCTTGGG---------------------------------------------------------
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>reverse_1791
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------------------------------CATACGCATTTGGCAGGCAA------------------------------
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