Multiple sequence alignment - TraesCS1A01G089600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G089600 chr1A 100.000 2927 0 0 1 2927 79106177 79109103 0.000000e+00 5406.0
1 TraesCS1A01G089600 chr1A 96.763 1143 31 5 986 2123 78964424 78963283 0.000000e+00 1901.0
2 TraesCS1A01G089600 chr1A 84.615 78 9 2 1891 1966 79117024 79117100 1.130000e-09 75.0
3 TraesCS1A01G089600 chr1A 100.000 32 0 0 2760 2791 79108905 79108936 3.150000e-05 60.2
4 TraesCS1A01G089600 chr1A 100.000 32 0 0 2729 2760 79108936 79108967 3.150000e-05 60.2
5 TraesCS1A01G089600 chr1D 94.996 1419 46 15 700 2107 84875146 84876550 0.000000e+00 2204.0
6 TraesCS1A01G089600 chr1D 91.995 1524 83 23 986 2494 84777744 84776245 0.000000e+00 2102.0
7 TraesCS1A01G089600 chr1D 92.435 423 27 2 2127 2544 84876658 84877080 1.500000e-167 599.0
8 TraesCS1A01G089600 chr1D 90.845 284 23 3 2477 2760 84776220 84775940 7.660000e-101 377.0
9 TraesCS1A01G089600 chr1D 96.226 159 6 0 2760 2918 84889702 84889860 8.050000e-66 261.0
10 TraesCS1A01G089600 chr1D 93.452 168 11 0 2760 2927 84775971 84775804 1.740000e-62 250.0
11 TraesCS1A01G089600 chr1D 96.491 57 2 0 617 673 84875088 84875144 8.640000e-16 95.3
12 TraesCS1A01G089600 chr1B 93.295 1402 71 14 617 2010 137555161 137556547 0.000000e+00 2047.0
13 TraesCS1A01G089600 chr1B 96.215 1136 34 8 995 2123 137454083 137452950 0.000000e+00 1851.0
14 TraesCS1A01G089600 chr1B 94.615 130 7 0 2410 2539 137611531 137611660 4.950000e-48 202.0
15 TraesCS1A01G089600 chr1B 85.567 194 24 4 426 618 431015759 431015569 1.780000e-47 200.0
16 TraesCS1A01G089600 chr1B 86.792 159 18 3 2107 2264 137452934 137452778 1.080000e-39 174.0
17 TraesCS1A01G089600 chr1B 95.000 100 4 1 2760 2858 137611821 137611920 3.910000e-34 156.0
18 TraesCS1A01G089600 chr1B 91.379 58 5 0 2361 2418 137570680 137570737 2.420000e-11 80.5
19 TraesCS1A01G089600 chr1B 97.778 45 1 0 385 429 137555134 137555178 8.700000e-11 78.7
20 TraesCS1A01G089600 chr5B 79.866 447 74 13 1474 1909 410722992 410723433 2.190000e-81 313.0
21 TraesCS1A01G089600 chr5A 78.355 462 78 18 1465 1909 450541441 450541897 2.220000e-71 279.0
22 TraesCS1A01G089600 chr5A 88.776 196 21 1 427 621 680734857 680735052 3.770000e-59 239.0
23 TraesCS1A01G089600 chr4D 89.671 213 22 0 171 383 8924739 8924527 3.720000e-69 272.0
24 TraesCS1A01G089600 chr4D 88.571 210 24 0 171 380 39198740 39198949 3.740000e-64 255.0
25 TraesCS1A01G089600 chr4D 90.698 172 15 1 1 172 8925895 8925725 8.160000e-56 228.0
26 TraesCS1A01G089600 chr6D 82.781 302 49 3 1475 1774 414256658 414256358 1.730000e-67 267.0
27 TraesCS1A01G089600 chr6D 88.208 212 23 2 171 382 113467265 113467056 4.840000e-63 252.0
28 TraesCS1A01G089600 chr2D 91.327 196 16 1 426 620 554472143 554472338 1.730000e-67 267.0
29 TraesCS1A01G089600 chr2D 89.202 213 23 0 171 383 595152412 595152200 1.730000e-67 267.0
30 TraesCS1A01G089600 chr2D 88.889 216 23 1 171 385 138690626 138690841 6.220000e-67 265.0
31 TraesCS1A01G089600 chr2D 88.235 221 23 3 171 390 537200379 537200597 8.050000e-66 261.0
32 TraesCS1A01G089600 chr2D 89.048 210 22 1 173 382 118515049 118515257 2.890000e-65 259.0
33 TraesCS1A01G089600 chr2D 91.279 172 14 1 1 172 621137497 621137667 1.750000e-57 233.0
34 TraesCS1A01G089600 chr2D 90.116 172 17 0 1 172 431918805 431918634 1.060000e-54 224.0
35 TraesCS1A01G089600 chr2D 90.116 172 17 0 1 172 642833982 642833811 1.060000e-54 224.0
36 TraesCS1A01G089600 chr2D 90.116 172 16 1 1 172 537193254 537193424 3.800000e-54 222.0
37 TraesCS1A01G089600 chr2D 81.726 197 20 11 429 621 394529986 394529802 1.820000e-32 150.0
38 TraesCS1A01G089600 chr7D 88.732 213 24 0 171 383 539758662 539758450 8.050000e-66 261.0
39 TraesCS1A01G089600 chr7D 90.698 172 15 1 1 172 613058162 613057992 8.160000e-56 228.0
40 TraesCS1A01G089600 chr7D 90.116 172 17 0 1 172 569024089 569024260 1.060000e-54 224.0
41 TraesCS1A01G089600 chr7D 100.000 28 0 0 1090 1117 552325266 552325293 5.000000e-03 52.8
42 TraesCS1A01G089600 chr6A 82.450 302 50 3 1475 1774 559002658 559002358 8.050000e-66 261.0
43 TraesCS1A01G089600 chr6A 90.769 195 18 0 426 620 597704726 597704532 8.050000e-66 261.0
44 TraesCS1A01G089600 chr3B 87.793 213 26 0 171 383 130051109 130050897 1.740000e-62 250.0
45 TraesCS1A01G089600 chr3B 90.058 171 17 0 1 171 67382207 67382377 3.800000e-54 222.0
46 TraesCS1A01G089600 chr4A 87.310 197 23 2 426 621 717000633 717000828 1.060000e-54 224.0
47 TraesCS1A01G089600 chr3D 90.116 172 17 0 1 172 378569415 378569244 1.060000e-54 224.0
48 TraesCS1A01G089600 chr2B 87.000 200 22 4 426 623 682349308 682349111 3.800000e-54 222.0
49 TraesCS1A01G089600 chr2A 84.000 200 25 5 426 619 367636729 367636531 4.980000e-43 185.0
50 TraesCS1A01G089600 chr3A 79.082 196 36 5 426 619 113931254 113931062 2.370000e-26 130.0
51 TraesCS1A01G089600 chr7B 100.000 28 0 0 1090 1117 597453606 597453633 5.000000e-03 52.8
52 TraesCS1A01G089600 chr7A 100.000 28 0 0 1090 1117 637994598 637994625 5.000000e-03 52.8
53 TraesCS1A01G089600 chr7A 100.000 28 0 0 1090 1117 638132398 638132425 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G089600 chr1A 79106177 79109103 2926 False 1842.133333 5406 100.000000 1 2927 3 chr1A.!!$F2 2926
1 TraesCS1A01G089600 chr1A 78963283 78964424 1141 True 1901.000000 1901 96.763000 986 2123 1 chr1A.!!$R1 1137
2 TraesCS1A01G089600 chr1D 84875088 84877080 1992 False 966.100000 2204 94.640667 617 2544 3 chr1D.!!$F2 1927
3 TraesCS1A01G089600 chr1D 84775804 84777744 1940 True 909.666667 2102 92.097333 986 2927 3 chr1D.!!$R1 1941
4 TraesCS1A01G089600 chr1B 137555134 137556547 1413 False 1062.850000 2047 95.536500 385 2010 2 chr1B.!!$F2 1625
5 TraesCS1A01G089600 chr1B 137452778 137454083 1305 True 1012.500000 1851 91.503500 995 2264 2 chr1B.!!$R2 1269
6 TraesCS1A01G089600 chr4D 8924527 8925895 1368 True 250.000000 272 90.184500 1 383 2 chr4D.!!$R1 382

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
347 348 0.036483 TTACCCTAAACGAACGGGGC 60.036 55.0 6.26 0.0 42.44 5.8 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2151 2692 3.034721 TGGTGGAACGATGTTACTGAC 57.965 47.619 0.0 0.0 38.12 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 4.699522 GACGCCTCCCGCTTTGGT 62.700 66.667 0.00 0.00 41.76 3.67
55 56 4.697756 CGCCTCCCGCTTTGGTGA 62.698 66.667 0.00 0.00 35.15 4.02
56 57 3.056328 GCCTCCCGCTTTGGTGAC 61.056 66.667 0.00 0.00 35.15 3.67
57 58 2.359975 CCTCCCGCTTTGGTGACC 60.360 66.667 0.00 0.00 35.15 4.02
58 59 2.742372 CTCCCGCTTTGGTGACCG 60.742 66.667 0.00 0.00 35.15 4.79
88 89 4.643387 GCACCAGTTCACGCCCCT 62.643 66.667 0.00 0.00 0.00 4.79
89 90 2.358737 CACCAGTTCACGCCCCTC 60.359 66.667 0.00 0.00 0.00 4.30
90 91 2.847234 ACCAGTTCACGCCCCTCA 60.847 61.111 0.00 0.00 0.00 3.86
91 92 2.358737 CCAGTTCACGCCCCTCAC 60.359 66.667 0.00 0.00 0.00 3.51
92 93 2.738521 CAGTTCACGCCCCTCACG 60.739 66.667 0.00 0.00 0.00 4.35
93 94 2.915659 AGTTCACGCCCCTCACGA 60.916 61.111 0.00 0.00 0.00 4.35
94 95 2.737376 GTTCACGCCCCTCACGAC 60.737 66.667 0.00 0.00 0.00 4.34
95 96 4.351938 TTCACGCCCCTCACGACG 62.352 66.667 0.00 0.00 0.00 5.12
103 104 4.129737 CCTCACGACGTCGGCCAT 62.130 66.667 37.89 17.63 44.95 4.40
104 105 2.579787 CTCACGACGTCGGCCATC 60.580 66.667 37.89 0.00 44.95 3.51
105 106 3.052620 CTCACGACGTCGGCCATCT 62.053 63.158 37.89 16.47 44.95 2.90
106 107 2.579787 CACGACGTCGGCCATCTC 60.580 66.667 37.89 0.00 44.95 2.75
107 108 3.823330 ACGACGTCGGCCATCTCC 61.823 66.667 37.89 0.00 44.95 3.71
108 109 3.822192 CGACGTCGGCCATCTCCA 61.822 66.667 29.70 0.00 35.37 3.86
109 110 2.577059 GACGTCGGCCATCTCCAA 59.423 61.111 2.24 0.00 0.00 3.53
110 111 1.079405 GACGTCGGCCATCTCCAAA 60.079 57.895 2.24 0.00 0.00 3.28
111 112 1.079127 ACGTCGGCCATCTCCAAAG 60.079 57.895 2.24 0.00 0.00 2.77
112 113 2.464459 CGTCGGCCATCTCCAAAGC 61.464 63.158 2.24 0.00 0.00 3.51
113 114 2.115291 GTCGGCCATCTCCAAAGCC 61.115 63.158 2.24 0.00 42.18 4.35
114 115 2.045045 CGGCCATCTCCAAAGCCA 60.045 61.111 2.24 0.00 46.08 4.75
115 116 1.454479 CGGCCATCTCCAAAGCCAT 60.454 57.895 2.24 0.00 46.08 4.40
116 117 1.731433 CGGCCATCTCCAAAGCCATG 61.731 60.000 2.24 0.00 46.08 3.66
117 118 1.440476 GCCATCTCCAAAGCCATGC 59.560 57.895 0.00 0.00 0.00 4.06
118 119 1.324740 GCCATCTCCAAAGCCATGCA 61.325 55.000 0.00 0.00 0.00 3.96
119 120 0.458669 CCATCTCCAAAGCCATGCAC 59.541 55.000 0.00 0.00 0.00 4.57
120 121 1.179152 CATCTCCAAAGCCATGCACA 58.821 50.000 0.00 0.00 0.00 4.57
121 122 1.546923 CATCTCCAAAGCCATGCACAA 59.453 47.619 0.00 0.00 0.00 3.33
122 123 0.961019 TCTCCAAAGCCATGCACAAC 59.039 50.000 0.00 0.00 0.00 3.32
123 124 0.037975 CTCCAAAGCCATGCACAACC 60.038 55.000 0.00 0.00 0.00 3.77
124 125 0.758310 TCCAAAGCCATGCACAACCA 60.758 50.000 0.00 0.00 0.00 3.67
125 126 0.320073 CCAAAGCCATGCACAACCAG 60.320 55.000 0.00 0.00 0.00 4.00
126 127 0.947180 CAAAGCCATGCACAACCAGC 60.947 55.000 0.00 0.00 0.00 4.85
127 128 1.117142 AAAGCCATGCACAACCAGCT 61.117 50.000 0.00 0.00 0.00 4.24
128 129 1.530013 AAGCCATGCACAACCAGCTC 61.530 55.000 0.00 0.00 0.00 4.09
129 130 2.998279 GCCATGCACAACCAGCTCC 61.998 63.158 0.00 0.00 0.00 4.70
130 131 1.604308 CCATGCACAACCAGCTCCA 60.604 57.895 0.00 0.00 0.00 3.86
131 132 1.582968 CATGCACAACCAGCTCCAC 59.417 57.895 0.00 0.00 0.00 4.02
132 133 0.892358 CATGCACAACCAGCTCCACT 60.892 55.000 0.00 0.00 0.00 4.00
133 134 0.892358 ATGCACAACCAGCTCCACTG 60.892 55.000 0.00 0.00 46.77 3.66
134 135 2.912624 GCACAACCAGCTCCACTGC 61.913 63.158 0.00 0.00 45.78 4.40
135 136 1.228063 CACAACCAGCTCCACTGCT 60.228 57.895 0.00 0.00 45.78 4.24
143 144 4.729918 CTCCACTGCTGGCCCACC 62.730 72.222 0.00 0.00 37.49 4.61
196 197 4.452733 GGCCCCGAAGTGGACGAG 62.453 72.222 0.00 0.00 42.00 4.18
198 199 4.796231 CCCCGAAGTGGACGAGCG 62.796 72.222 0.00 0.00 42.00 5.03
199 200 3.744719 CCCGAAGTGGACGAGCGA 61.745 66.667 0.00 0.00 42.00 4.93
200 201 2.504244 CCGAAGTGGACGAGCGAC 60.504 66.667 0.00 0.00 42.00 5.19
202 203 3.173240 GAAGTGGACGAGCGACGC 61.173 66.667 13.03 13.03 46.94 5.19
217 218 4.072088 CGCGTCCGTTTGCTGTCC 62.072 66.667 0.00 0.00 0.00 4.02
218 219 4.072088 GCGTCCGTTTGCTGTCCG 62.072 66.667 0.00 0.00 0.00 4.79
219 220 4.072088 CGTCCGTTTGCTGTCCGC 62.072 66.667 0.00 0.00 39.77 5.54
220 221 3.723348 GTCCGTTTGCTGTCCGCC 61.723 66.667 0.00 0.00 38.05 6.13
236 237 3.708734 CCGCGACCCAAACACGAC 61.709 66.667 8.23 0.00 0.00 4.34
237 238 4.054455 CGCGACCCAAACACGACG 62.054 66.667 0.00 0.00 0.00 5.12
238 239 4.364409 GCGACCCAAACACGACGC 62.364 66.667 0.00 0.00 39.33 5.19
239 240 2.962786 CGACCCAAACACGACGCA 60.963 61.111 0.00 0.00 0.00 5.24
240 241 2.314647 CGACCCAAACACGACGCAT 61.315 57.895 0.00 0.00 0.00 4.73
241 242 1.206578 GACCCAAACACGACGCATG 59.793 57.895 0.00 0.00 0.00 4.06
242 243 1.503818 GACCCAAACACGACGCATGT 61.504 55.000 0.00 0.00 0.00 3.21
243 244 1.098712 ACCCAAACACGACGCATGTT 61.099 50.000 0.00 0.00 42.07 2.71
246 247 2.866688 AAACACGACGCATGTTTGC 58.133 47.368 13.78 0.00 46.05 3.68
256 257 2.749477 GCATGTTTGCGTTCGAAATG 57.251 45.000 0.00 0.00 39.49 2.32
257 258 2.315011 GCATGTTTGCGTTCGAAATGA 58.685 42.857 0.00 0.00 39.49 2.57
258 259 2.339400 GCATGTTTGCGTTCGAAATGAG 59.661 45.455 0.00 0.00 39.49 2.90
259 260 3.554524 CATGTTTGCGTTCGAAATGAGT 58.445 40.909 0.00 0.00 0.00 3.41
260 261 3.247563 TGTTTGCGTTCGAAATGAGTC 57.752 42.857 0.00 0.00 0.00 3.36
261 262 2.222624 GTTTGCGTTCGAAATGAGTCG 58.777 47.619 0.00 0.00 42.48 4.18
262 263 0.787787 TTGCGTTCGAAATGAGTCGG 59.212 50.000 0.00 0.00 41.43 4.79
263 264 0.319211 TGCGTTCGAAATGAGTCGGT 60.319 50.000 0.00 0.00 41.43 4.69
264 265 0.365859 GCGTTCGAAATGAGTCGGTC 59.634 55.000 0.00 0.00 41.43 4.79
265 266 0.989890 CGTTCGAAATGAGTCGGTCC 59.010 55.000 0.00 0.00 41.43 4.46
266 267 0.989890 GTTCGAAATGAGTCGGTCCG 59.010 55.000 4.39 4.39 41.43 4.79
267 268 0.108992 TTCGAAATGAGTCGGTCCGG 60.109 55.000 12.29 0.00 41.43 5.14
268 269 0.961857 TCGAAATGAGTCGGTCCGGA 60.962 55.000 12.29 0.00 41.43 5.14
269 270 0.801067 CGAAATGAGTCGGTCCGGAC 60.801 60.000 27.04 27.04 37.37 4.79
270 271 0.245539 GAAATGAGTCGGTCCGGACA 59.754 55.000 34.40 14.03 39.42 4.02
271 272 0.037605 AAATGAGTCGGTCCGGACAC 60.038 55.000 34.40 24.63 39.42 3.67
272 273 1.183030 AATGAGTCGGTCCGGACACA 61.183 55.000 34.40 23.57 40.80 3.72
273 274 1.183030 ATGAGTCGGTCCGGACACAA 61.183 55.000 34.40 17.01 40.13 3.33
274 275 1.364901 GAGTCGGTCCGGACACAAA 59.635 57.895 34.40 14.45 39.42 2.83
275 276 0.249573 GAGTCGGTCCGGACACAAAA 60.250 55.000 34.40 12.65 39.42 2.44
276 277 0.531311 AGTCGGTCCGGACACAAAAC 60.531 55.000 34.40 22.30 39.42 2.43
277 278 1.592131 TCGGTCCGGACACAAAACG 60.592 57.895 34.40 25.96 0.00 3.60
282 283 4.128139 CGGACACAAAACGGACCA 57.872 55.556 0.00 0.00 0.00 4.02
283 284 1.938861 CGGACACAAAACGGACCAG 59.061 57.895 0.00 0.00 0.00 4.00
284 285 0.531090 CGGACACAAAACGGACCAGA 60.531 55.000 0.00 0.00 0.00 3.86
285 286 1.876416 CGGACACAAAACGGACCAGAT 60.876 52.381 0.00 0.00 0.00 2.90
286 287 2.610976 CGGACACAAAACGGACCAGATA 60.611 50.000 0.00 0.00 0.00 1.98
287 288 3.000727 GGACACAAAACGGACCAGATAG 58.999 50.000 0.00 0.00 0.00 2.08
288 289 3.000727 GACACAAAACGGACCAGATAGG 58.999 50.000 0.00 0.00 45.67 2.57
297 298 4.399764 CCAGATAGGTCCAGGCCA 57.600 61.111 5.01 0.00 0.00 5.36
298 299 2.859929 CCAGATAGGTCCAGGCCAT 58.140 57.895 5.01 0.00 0.00 4.40
299 300 0.689623 CCAGATAGGTCCAGGCCATC 59.310 60.000 5.01 0.00 0.00 3.51
300 301 0.319728 CAGATAGGTCCAGGCCATCG 59.680 60.000 5.01 0.00 0.00 3.84
301 302 1.004440 GATAGGTCCAGGCCATCGC 60.004 63.158 5.01 0.00 0.00 4.58
302 303 2.771763 GATAGGTCCAGGCCATCGCG 62.772 65.000 5.01 0.00 35.02 5.87
326 327 3.717294 GCCGTGGGGTCTGTCCAT 61.717 66.667 0.00 0.00 36.58 3.41
327 328 3.077907 CCGTGGGGTCTGTCCATT 58.922 61.111 0.00 0.00 36.58 3.16
328 329 1.378762 CCGTGGGGTCTGTCCATTT 59.621 57.895 0.00 0.00 36.58 2.32
329 330 0.251165 CCGTGGGGTCTGTCCATTTT 60.251 55.000 0.00 0.00 36.58 1.82
330 331 1.003812 CCGTGGGGTCTGTCCATTTTA 59.996 52.381 0.00 0.00 36.58 1.52
331 332 2.081462 CGTGGGGTCTGTCCATTTTAC 58.919 52.381 0.00 0.00 36.58 2.01
332 333 2.443416 GTGGGGTCTGTCCATTTTACC 58.557 52.381 0.00 0.00 36.58 2.85
336 337 4.579647 GGGTCTGTCCATTTTACCCTAA 57.420 45.455 0.00 0.00 45.34 2.69
337 338 4.925836 GGGTCTGTCCATTTTACCCTAAA 58.074 43.478 0.00 0.00 45.34 1.85
338 339 4.703575 GGGTCTGTCCATTTTACCCTAAAC 59.296 45.833 0.00 0.00 45.34 2.01
339 340 4.393990 GGTCTGTCCATTTTACCCTAAACG 59.606 45.833 0.00 0.00 35.97 3.60
340 341 5.240121 GTCTGTCCATTTTACCCTAAACGA 58.760 41.667 0.00 0.00 0.00 3.85
341 342 5.702209 GTCTGTCCATTTTACCCTAAACGAA 59.298 40.000 0.00 0.00 0.00 3.85
342 343 5.702209 TCTGTCCATTTTACCCTAAACGAAC 59.298 40.000 0.00 0.00 0.00 3.95
343 344 4.451774 TGTCCATTTTACCCTAAACGAACG 59.548 41.667 0.00 0.00 0.00 3.95
344 345 4.002316 TCCATTTTACCCTAAACGAACGG 58.998 43.478 0.00 0.00 0.00 4.44
345 346 3.127376 CCATTTTACCCTAAACGAACGGG 59.873 47.826 0.00 0.00 43.79 5.28
346 347 2.470983 TTTACCCTAAACGAACGGGG 57.529 50.000 0.00 0.00 42.44 5.73
347 348 0.036483 TTACCCTAAACGAACGGGGC 60.036 55.000 6.26 0.00 42.44 5.80
348 349 1.898330 TACCCTAAACGAACGGGGCC 61.898 60.000 0.00 0.00 42.44 5.80
349 350 2.816520 CCTAAACGAACGGGGCCG 60.817 66.667 0.00 0.00 46.03 6.13
350 351 2.816520 CTAAACGAACGGGGCCGG 60.817 66.667 9.88 9.88 44.69 6.13
351 352 3.299524 CTAAACGAACGGGGCCGGA 62.300 63.158 18.95 0.00 44.69 5.14
352 353 3.588057 TAAACGAACGGGGCCGGAC 62.588 63.158 18.95 0.00 44.69 4.79
363 364 4.176752 GCCGGACAGGATGGGGTC 62.177 72.222 5.05 0.00 45.00 4.46
364 365 2.687200 CCGGACAGGATGGGGTCA 60.687 66.667 0.00 0.00 45.00 4.02
365 366 2.584608 CGGACAGGATGGGGTCAC 59.415 66.667 0.00 0.00 43.62 3.67
366 367 2.584608 GGACAGGATGGGGTCACG 59.415 66.667 0.00 0.00 43.62 4.35
367 368 2.125106 GACAGGATGGGGTCACGC 60.125 66.667 0.00 0.00 43.62 5.34
368 369 4.082523 ACAGGATGGGGTCACGCG 62.083 66.667 3.53 3.53 43.62 6.01
371 372 3.845259 GGATGGGGTCACGCGCTA 61.845 66.667 5.73 0.00 0.00 4.26
372 373 2.279517 GATGGGGTCACGCGCTAG 60.280 66.667 5.73 0.00 0.00 3.42
373 374 2.758327 ATGGGGTCACGCGCTAGA 60.758 61.111 5.73 0.00 0.00 2.43
374 375 2.685387 GATGGGGTCACGCGCTAGAG 62.685 65.000 5.73 0.00 0.00 2.43
375 376 3.450115 GGGGTCACGCGCTAGAGT 61.450 66.667 5.73 0.00 0.00 3.24
376 377 2.572284 GGGTCACGCGCTAGAGTT 59.428 61.111 5.73 0.00 0.00 3.01
377 378 1.805945 GGGTCACGCGCTAGAGTTG 60.806 63.158 5.73 0.00 0.00 3.16
378 379 1.805945 GGTCACGCGCTAGAGTTGG 60.806 63.158 5.73 0.00 0.00 3.77
379 380 2.126071 TCACGCGCTAGAGTTGGC 60.126 61.111 5.73 0.00 0.00 4.52
380 381 3.188786 CACGCGCTAGAGTTGGCC 61.189 66.667 5.73 0.00 0.00 5.36
381 382 3.382832 ACGCGCTAGAGTTGGCCT 61.383 61.111 5.73 0.00 0.00 5.19
382 383 2.050350 ACGCGCTAGAGTTGGCCTA 61.050 57.895 5.73 0.00 0.00 3.93
383 384 1.299468 CGCGCTAGAGTTGGCCTAG 60.299 63.158 5.56 0.00 37.31 3.02
392 393 3.679389 AGAGTTGGCCTAGAAACATGTG 58.321 45.455 3.32 0.00 0.00 3.21
424 425 0.534203 GCGGTGAAGAACAACCCAGA 60.534 55.000 0.00 0.00 31.55 3.86
425 426 1.512926 CGGTGAAGAACAACCCAGAG 58.487 55.000 0.00 0.00 31.55 3.35
426 427 1.878102 CGGTGAAGAACAACCCAGAGG 60.878 57.143 0.00 0.00 40.04 3.69
441 442 4.844349 CCAGAGGGAAGGTCATTTTAGA 57.156 45.455 0.00 0.00 35.59 2.10
442 443 4.775236 CCAGAGGGAAGGTCATTTTAGAG 58.225 47.826 0.00 0.00 35.59 2.43
443 444 4.195416 CAGAGGGAAGGTCATTTTAGAGC 58.805 47.826 0.00 0.00 36.31 4.09
444 445 3.846588 AGAGGGAAGGTCATTTTAGAGCA 59.153 43.478 0.00 0.00 38.44 4.26
445 446 4.476479 AGAGGGAAGGTCATTTTAGAGCAT 59.524 41.667 0.00 0.00 38.44 3.79
446 447 5.044550 AGAGGGAAGGTCATTTTAGAGCATT 60.045 40.000 0.00 0.00 38.44 3.56
447 448 4.952335 AGGGAAGGTCATTTTAGAGCATTG 59.048 41.667 0.00 0.00 38.44 2.82
448 449 4.706962 GGGAAGGTCATTTTAGAGCATTGT 59.293 41.667 0.00 0.00 38.44 2.71
449 450 5.885912 GGGAAGGTCATTTTAGAGCATTGTA 59.114 40.000 0.00 0.00 38.44 2.41
450 451 6.377146 GGGAAGGTCATTTTAGAGCATTGTAA 59.623 38.462 0.00 0.00 38.44 2.41
451 452 7.068716 GGGAAGGTCATTTTAGAGCATTGTAAT 59.931 37.037 0.00 0.00 38.44 1.89
452 453 8.131731 GGAAGGTCATTTTAGAGCATTGTAATC 58.868 37.037 0.00 0.00 38.44 1.75
453 454 7.251704 AGGTCATTTTAGAGCATTGTAATCG 57.748 36.000 0.00 0.00 38.44 3.34
454 455 6.823689 AGGTCATTTTAGAGCATTGTAATCGT 59.176 34.615 0.00 0.00 38.44 3.73
455 456 6.907212 GGTCATTTTAGAGCATTGTAATCGTG 59.093 38.462 0.00 0.00 36.11 4.35
456 457 7.201609 GGTCATTTTAGAGCATTGTAATCGTGA 60.202 37.037 0.00 0.00 36.11 4.35
457 458 8.175069 GTCATTTTAGAGCATTGTAATCGTGAA 58.825 33.333 0.00 0.00 0.00 3.18
458 459 8.892723 TCATTTTAGAGCATTGTAATCGTGAAT 58.107 29.630 0.00 0.00 0.00 2.57
459 460 9.162793 CATTTTAGAGCATTGTAATCGTGAATC 57.837 33.333 0.00 0.00 0.00 2.52
460 461 8.492673 TTTTAGAGCATTGTAATCGTGAATCT 57.507 30.769 0.00 0.00 0.00 2.40
461 462 9.594478 TTTTAGAGCATTGTAATCGTGAATCTA 57.406 29.630 0.00 0.00 0.00 1.98
462 463 9.594478 TTTAGAGCATTGTAATCGTGAATCTAA 57.406 29.630 0.00 0.00 0.00 2.10
463 464 9.764363 TTAGAGCATTGTAATCGTGAATCTAAT 57.236 29.630 0.00 0.00 0.00 1.73
465 466 9.935241 AGAGCATTGTAATCGTGAATCTAATAT 57.065 29.630 0.00 0.00 0.00 1.28
466 467 9.964253 GAGCATTGTAATCGTGAATCTAATATG 57.036 33.333 0.00 0.00 0.00 1.78
467 468 8.939929 AGCATTGTAATCGTGAATCTAATATGG 58.060 33.333 0.00 0.00 0.00 2.74
468 469 8.721478 GCATTGTAATCGTGAATCTAATATGGT 58.279 33.333 0.00 0.00 0.00 3.55
471 472 8.981724 TGTAATCGTGAATCTAATATGGTAGC 57.018 34.615 0.00 0.00 0.00 3.58
472 473 8.803235 TGTAATCGTGAATCTAATATGGTAGCT 58.197 33.333 0.00 0.00 0.00 3.32
473 474 9.291664 GTAATCGTGAATCTAATATGGTAGCTC 57.708 37.037 0.00 0.00 0.00 4.09
474 475 6.894339 TCGTGAATCTAATATGGTAGCTCA 57.106 37.500 0.00 0.00 0.00 4.26
475 476 7.468141 TCGTGAATCTAATATGGTAGCTCAT 57.532 36.000 0.00 0.00 0.00 2.90
476 477 7.315890 TCGTGAATCTAATATGGTAGCTCATG 58.684 38.462 0.00 0.00 0.00 3.07
477 478 7.039714 TCGTGAATCTAATATGGTAGCTCATGT 60.040 37.037 0.00 0.00 0.00 3.21
478 479 7.062722 CGTGAATCTAATATGGTAGCTCATGTG 59.937 40.741 0.00 0.00 0.00 3.21
479 480 6.875726 TGAATCTAATATGGTAGCTCATGTGC 59.124 38.462 11.79 11.79 0.00 4.57
480 481 6.617782 ATCTAATATGGTAGCTCATGTGCT 57.382 37.500 24.28 24.28 46.11 4.40
481 482 7.724490 ATCTAATATGGTAGCTCATGTGCTA 57.276 36.000 22.27 22.27 43.74 3.49
482 483 7.163001 TCTAATATGGTAGCTCATGTGCTAG 57.837 40.000 25.61 15.24 44.93 3.42
483 484 5.815233 AATATGGTAGCTCATGTGCTAGT 57.185 39.130 25.61 17.67 44.93 2.57
484 485 2.967599 TGGTAGCTCATGTGCTAGTG 57.032 50.000 25.61 0.00 44.93 2.74
485 486 1.134699 TGGTAGCTCATGTGCTAGTGC 60.135 52.381 25.61 15.79 44.93 4.40
486 487 1.134699 GGTAGCTCATGTGCTAGTGCA 60.135 52.381 25.61 7.33 44.93 4.57
498 499 3.855689 GCTAGTGCAAAATGGATGTGT 57.144 42.857 0.00 0.00 39.41 3.72
499 500 4.963276 GCTAGTGCAAAATGGATGTGTA 57.037 40.909 0.00 0.00 39.41 2.90
500 501 4.913376 GCTAGTGCAAAATGGATGTGTAG 58.087 43.478 0.00 0.00 39.41 2.74
501 502 4.635765 GCTAGTGCAAAATGGATGTGTAGA 59.364 41.667 0.00 0.00 39.41 2.59
502 503 5.297776 GCTAGTGCAAAATGGATGTGTAGAT 59.702 40.000 0.00 0.00 39.41 1.98
503 504 5.824904 AGTGCAAAATGGATGTGTAGATC 57.175 39.130 0.00 0.00 0.00 2.75
504 505 4.641989 AGTGCAAAATGGATGTGTAGATCC 59.358 41.667 1.30 1.30 42.23 3.36
512 513 5.698741 TGGATGTGTAGATCCATCAAACT 57.301 39.130 6.64 0.00 45.85 2.66
513 514 6.065976 TGGATGTGTAGATCCATCAAACTT 57.934 37.500 6.64 0.00 45.85 2.66
514 515 5.882000 TGGATGTGTAGATCCATCAAACTTG 59.118 40.000 6.64 0.00 45.85 3.16
515 516 5.882557 GGATGTGTAGATCCATCAAACTTGT 59.117 40.000 10.60 0.00 41.59 3.16
516 517 6.183360 GGATGTGTAGATCCATCAAACTTGTG 60.183 42.308 10.60 0.00 41.59 3.33
517 518 5.003160 TGTGTAGATCCATCAAACTTGTGG 58.997 41.667 0.00 5.29 33.50 4.17
518 519 5.003804 GTGTAGATCCATCAAACTTGTGGT 58.996 41.667 9.44 1.36 33.75 4.16
519 520 5.473504 GTGTAGATCCATCAAACTTGTGGTT 59.526 40.000 9.44 3.96 40.28 3.67
520 521 5.473162 TGTAGATCCATCAAACTTGTGGTTG 59.527 40.000 9.44 0.00 38.29 3.77
521 522 4.728772 AGATCCATCAAACTTGTGGTTGA 58.271 39.130 0.00 0.00 38.29 3.18
522 523 5.139727 AGATCCATCAAACTTGTGGTTGAA 58.860 37.500 0.53 0.00 38.29 2.69
523 524 4.647424 TCCATCAAACTTGTGGTTGAAC 57.353 40.909 0.53 0.00 38.29 3.18
524 525 4.277476 TCCATCAAACTTGTGGTTGAACT 58.723 39.130 0.53 0.00 38.29 3.01
525 526 4.338118 TCCATCAAACTTGTGGTTGAACTC 59.662 41.667 0.53 0.00 38.29 3.01
526 527 4.097741 CCATCAAACTTGTGGTTGAACTCA 59.902 41.667 0.53 0.00 38.29 3.41
527 528 4.695217 TCAAACTTGTGGTTGAACTCAC 57.305 40.909 9.15 9.15 38.29 3.51
528 529 3.442273 TCAAACTTGTGGTTGAACTCACC 59.558 43.478 12.25 0.00 38.29 4.02
529 530 3.366052 AACTTGTGGTTGAACTCACCT 57.634 42.857 12.25 0.00 36.70 4.00
530 531 2.919228 ACTTGTGGTTGAACTCACCTC 58.081 47.619 12.25 0.00 33.29 3.85
531 532 2.222027 CTTGTGGTTGAACTCACCTCC 58.778 52.381 12.25 0.00 33.29 4.30
532 533 0.105964 TGTGGTTGAACTCACCTCCG 59.894 55.000 12.25 0.00 33.29 4.63
533 534 0.602905 GTGGTTGAACTCACCTCCGG 60.603 60.000 0.00 0.00 0.00 5.14
534 535 1.671379 GGTTGAACTCACCTCCGGC 60.671 63.158 0.00 0.00 0.00 6.13
535 536 1.070786 GTTGAACTCACCTCCGGCA 59.929 57.895 0.00 0.00 0.00 5.69
536 537 0.321653 GTTGAACTCACCTCCGGCAT 60.322 55.000 0.00 0.00 0.00 4.40
537 538 0.400213 TTGAACTCACCTCCGGCATT 59.600 50.000 0.00 0.00 0.00 3.56
538 539 0.400213 TGAACTCACCTCCGGCATTT 59.600 50.000 0.00 0.00 0.00 2.32
539 540 1.626321 TGAACTCACCTCCGGCATTTA 59.374 47.619 0.00 0.00 0.00 1.40
540 541 2.238646 TGAACTCACCTCCGGCATTTAT 59.761 45.455 0.00 0.00 0.00 1.40
541 542 3.279434 GAACTCACCTCCGGCATTTATT 58.721 45.455 0.00 0.00 0.00 1.40
542 543 3.366052 ACTCACCTCCGGCATTTATTT 57.634 42.857 0.00 0.00 0.00 1.40
543 544 3.697166 ACTCACCTCCGGCATTTATTTT 58.303 40.909 0.00 0.00 0.00 1.82
544 545 3.443681 ACTCACCTCCGGCATTTATTTTG 59.556 43.478 0.00 0.00 0.00 2.44
545 546 3.691575 TCACCTCCGGCATTTATTTTGA 58.308 40.909 0.00 0.00 0.00 2.69
546 547 4.082845 TCACCTCCGGCATTTATTTTGAA 58.917 39.130 0.00 0.00 0.00 2.69
547 548 4.524714 TCACCTCCGGCATTTATTTTGAAA 59.475 37.500 0.00 0.00 0.00 2.69
548 549 4.625311 CACCTCCGGCATTTATTTTGAAAC 59.375 41.667 0.00 0.00 0.00 2.78
549 550 4.526650 ACCTCCGGCATTTATTTTGAAACT 59.473 37.500 0.00 0.00 0.00 2.66
550 551 5.102313 CCTCCGGCATTTATTTTGAAACTC 58.898 41.667 0.00 0.00 0.00 3.01
551 552 5.105756 CCTCCGGCATTTATTTTGAAACTCT 60.106 40.000 0.00 0.00 0.00 3.24
552 553 6.339587 TCCGGCATTTATTTTGAAACTCTT 57.660 33.333 0.00 0.00 0.00 2.85
553 554 7.362574 CCTCCGGCATTTATTTTGAAACTCTTA 60.363 37.037 0.00 0.00 0.00 2.10
554 555 7.535139 TCCGGCATTTATTTTGAAACTCTTAG 58.465 34.615 0.00 0.00 0.00 2.18
555 556 6.253512 CCGGCATTTATTTTGAAACTCTTAGC 59.746 38.462 0.00 0.00 0.00 3.09
556 557 6.021468 CGGCATTTATTTTGAAACTCTTAGCG 60.021 38.462 0.00 0.00 0.00 4.26
557 558 6.253512 GGCATTTATTTTGAAACTCTTAGCGG 59.746 38.462 0.00 0.00 0.00 5.52
558 559 7.027161 GCATTTATTTTGAAACTCTTAGCGGA 58.973 34.615 0.00 0.00 0.00 5.54
559 560 7.008357 GCATTTATTTTGAAACTCTTAGCGGAC 59.992 37.037 0.00 0.00 0.00 4.79
560 561 7.739498 TTTATTTTGAAACTCTTAGCGGACT 57.261 32.000 0.00 0.00 0.00 3.85
561 562 8.836268 TTTATTTTGAAACTCTTAGCGGACTA 57.164 30.769 0.00 0.00 0.00 2.59
562 563 9.444600 TTTATTTTGAAACTCTTAGCGGACTAT 57.555 29.630 0.00 0.00 0.00 2.12
563 564 6.721571 TTTTGAAACTCTTAGCGGACTATG 57.278 37.500 0.00 0.00 0.00 2.23
564 565 5.401531 TTGAAACTCTTAGCGGACTATGT 57.598 39.130 0.00 0.00 0.00 2.29
565 566 6.519679 TTGAAACTCTTAGCGGACTATGTA 57.480 37.500 0.00 0.00 0.00 2.29
566 567 6.519679 TGAAACTCTTAGCGGACTATGTAA 57.480 37.500 0.00 0.00 0.00 2.41
567 568 6.561614 TGAAACTCTTAGCGGACTATGTAAG 58.438 40.000 0.00 0.00 0.00 2.34
568 569 6.152323 TGAAACTCTTAGCGGACTATGTAAGT 59.848 38.462 0.00 0.00 42.80 2.24
569 570 5.502153 ACTCTTAGCGGACTATGTAAGTG 57.498 43.478 0.00 0.00 39.07 3.16
570 571 4.948621 ACTCTTAGCGGACTATGTAAGTGT 59.051 41.667 0.00 0.00 39.07 3.55
571 572 5.418209 ACTCTTAGCGGACTATGTAAGTGTT 59.582 40.000 0.00 0.00 39.07 3.32
572 573 5.647589 TCTTAGCGGACTATGTAAGTGTTG 58.352 41.667 0.00 0.00 39.07 3.33
573 574 5.416639 TCTTAGCGGACTATGTAAGTGTTGA 59.583 40.000 0.00 0.00 39.07 3.18
574 575 4.737855 AGCGGACTATGTAAGTGTTGAT 57.262 40.909 0.00 0.00 39.07 2.57
575 576 5.086104 AGCGGACTATGTAAGTGTTGATT 57.914 39.130 0.00 0.00 39.07 2.57
576 577 6.216801 AGCGGACTATGTAAGTGTTGATTA 57.783 37.500 0.00 0.00 39.07 1.75
577 578 6.636705 AGCGGACTATGTAAGTGTTGATTAA 58.363 36.000 0.00 0.00 39.07 1.40
578 579 7.101054 AGCGGACTATGTAAGTGTTGATTAAA 58.899 34.615 0.00 0.00 39.07 1.52
579 580 7.769044 AGCGGACTATGTAAGTGTTGATTAAAT 59.231 33.333 0.00 0.00 39.07 1.40
580 581 8.395633 GCGGACTATGTAAGTGTTGATTAAATT 58.604 33.333 0.00 0.00 39.07 1.82
607 608 9.750783 ATAAATAAAGCTAGCCATGATGATCTT 57.249 29.630 12.13 0.00 0.00 2.40
608 609 8.474710 AAATAAAGCTAGCCATGATGATCTTT 57.525 30.769 12.13 3.86 0.00 2.52
609 610 8.474710 AATAAAGCTAGCCATGATGATCTTTT 57.525 30.769 12.13 3.33 0.00 2.27
610 611 6.388435 AAAGCTAGCCATGATGATCTTTTC 57.612 37.500 12.13 0.00 0.00 2.29
611 612 5.307544 AGCTAGCCATGATGATCTTTTCT 57.692 39.130 12.13 0.00 0.00 2.52
612 613 5.692928 AGCTAGCCATGATGATCTTTTCTT 58.307 37.500 12.13 0.00 0.00 2.52
613 614 6.835174 AGCTAGCCATGATGATCTTTTCTTA 58.165 36.000 12.13 0.00 0.00 2.10
614 615 7.285566 AGCTAGCCATGATGATCTTTTCTTAA 58.714 34.615 12.13 0.00 0.00 1.85
615 616 7.776969 AGCTAGCCATGATGATCTTTTCTTAAA 59.223 33.333 12.13 0.00 0.00 1.52
616 617 8.408601 GCTAGCCATGATGATCTTTTCTTAAAA 58.591 33.333 2.29 0.00 0.00 1.52
674 675 2.151502 CCTCAGTCAAGGCTCCTCTA 57.848 55.000 0.00 0.00 0.00 2.43
678 679 2.114616 CAGTCAAGGCTCCTCTACCAT 58.885 52.381 0.00 0.00 0.00 3.55
680 681 3.706594 CAGTCAAGGCTCCTCTACCATTA 59.293 47.826 0.00 0.00 0.00 1.90
683 684 3.648067 TCAAGGCTCCTCTACCATTATGG 59.352 47.826 10.08 10.08 45.02 2.74
706 709 5.527582 GGTGTCAGTTAACAAGTCATTGACT 59.472 40.000 13.61 13.61 45.64 3.41
715 718 4.785301 ACAAGTCATTGACTGGGATATGG 58.215 43.478 22.30 7.83 42.59 2.74
721 724 4.346127 TCATTGACTGGGATATGGACTGAG 59.654 45.833 0.00 0.00 0.00 3.35
794 798 4.082895 GCAGAAGCTTCACATGAACATCTT 60.083 41.667 27.57 0.00 37.91 2.40
836 841 3.991773 CGTCTTGACCGGATTTTTGTCTA 59.008 43.478 9.46 0.00 0.00 2.59
840 845 6.856426 GTCTTGACCGGATTTTTGTCTAAAAG 59.144 38.462 9.46 0.00 39.00 2.27
865 870 2.620251 TTGCTGACCAGATTATCCCG 57.380 50.000 0.47 0.00 0.00 5.14
927 934 1.100510 CATCCCATCACCTGCACTTG 58.899 55.000 0.00 0.00 0.00 3.16
984 991 5.295540 AGTCTGAAACTCTGAAAAAGCTCAC 59.704 40.000 0.00 0.00 30.02 3.51
1036 1043 0.456995 CGACTTCTCCAAGCTCGACC 60.457 60.000 0.00 0.00 36.26 4.79
1040 1047 4.421479 CTCCAAGCTCGACCGCGT 62.421 66.667 4.92 0.00 38.98 6.01
2047 2495 2.669781 AGCAAATATGATGTGTGGGGG 58.330 47.619 0.00 0.00 0.00 5.40
2151 2692 4.935352 TTGATTGTGGTTTTTCCTCTGG 57.065 40.909 0.00 0.00 37.07 3.86
2166 2707 3.192844 TCCTCTGGTCAGTAACATCGTTC 59.807 47.826 0.00 0.00 0.00 3.95
2173 2714 3.810941 GTCAGTAACATCGTTCCACCAAA 59.189 43.478 0.00 0.00 0.00 3.28
2184 2725 3.119849 CGTTCCACCAAATCAGATCAACC 60.120 47.826 0.00 0.00 0.00 3.77
2341 2898 0.108186 TCATACAAGGCTGCAGGACG 60.108 55.000 17.12 0.00 0.00 4.79
2362 2919 5.043903 ACGGTCTCGATGTGAATGATTAAG 58.956 41.667 0.00 0.00 40.11 1.85
2369 2928 9.684448 TCTCGATGTGAATGATTAAGAATACTC 57.316 33.333 0.00 0.00 0.00 2.59
2428 2991 6.348786 GCATGAAGGATATACAACGCATCATT 60.349 38.462 0.00 0.00 0.00 2.57
2441 3004 4.388485 ACGCATCATTAGCATACATCCAA 58.612 39.130 0.00 0.00 0.00 3.53
2445 3008 6.097356 GCATCATTAGCATACATCCAATTGG 58.903 40.000 19.08 19.08 0.00 3.16
2539 3144 6.915843 ACAACAAAGCCATAGTAAAACGAAAG 59.084 34.615 0.00 0.00 0.00 2.62
2561 3166 0.389948 GGCGAAGGTGAGTAGTGTGG 60.390 60.000 0.00 0.00 0.00 4.17
2563 3168 1.000506 GCGAAGGTGAGTAGTGTGGAA 59.999 52.381 0.00 0.00 0.00 3.53
2571 3176 3.031736 TGAGTAGTGTGGAAGGCCTATC 58.968 50.000 5.16 6.00 34.31 2.08
2587 3192 2.029290 CCTATCCGTACACTATGCCACC 60.029 54.545 0.00 0.00 0.00 4.61
2590 3195 0.535335 CCGTACACTATGCCACCACT 59.465 55.000 0.00 0.00 0.00 4.00
2609 3214 6.451064 CCACTCATAAGGGGTAAAAACATC 57.549 41.667 0.00 0.00 41.66 3.06
2619 3224 4.093743 GGGTAAAAACATCCCTGACCATT 58.906 43.478 0.00 0.00 38.29 3.16
2643 3248 3.016736 CTCCAAACCCATACACATGACC 58.983 50.000 0.00 0.00 33.67 4.02
2646 3251 1.281419 AACCCATACACATGACCGGA 58.719 50.000 9.46 0.00 33.67 5.14
2647 3252 1.281419 ACCCATACACATGACCGGAA 58.719 50.000 9.46 0.00 33.67 4.30
2648 3253 1.631388 ACCCATACACATGACCGGAAA 59.369 47.619 9.46 0.00 33.67 3.13
2649 3254 2.014128 CCCATACACATGACCGGAAAC 58.986 52.381 9.46 0.00 33.67 2.78
2674 3279 4.442375 TGGTTGTTGTTTCAATCGTTGT 57.558 36.364 0.00 0.00 31.79 3.32
2690 3295 7.330946 TCAATCGTTGTAAAGAAGATCACGAAT 59.669 33.333 3.69 0.00 0.00 3.34
2701 3306 0.615331 ATCACGAATGGAGCCAGTGT 59.385 50.000 0.00 0.00 34.71 3.55
2717 3322 5.303078 AGCCAGTGTATAGACCAGTTGATAG 59.697 44.000 0.00 0.00 0.00 2.08
2731 3336 5.472478 CCAGTTGATAGCATGCATAAGTGAT 59.528 40.000 21.98 0.00 0.00 3.06
2732 3337 6.371389 CAGTTGATAGCATGCATAAGTGATG 58.629 40.000 21.98 5.73 38.73 3.07
2733 3338 6.204108 CAGTTGATAGCATGCATAAGTGATGA 59.796 38.462 21.98 0.00 37.82 2.92
2734 3339 6.769341 AGTTGATAGCATGCATAAGTGATGAA 59.231 34.615 21.98 0.00 37.82 2.57
2735 3340 6.796705 TGATAGCATGCATAAGTGATGAAG 57.203 37.500 21.98 0.00 37.82 3.02
2736 3341 6.293698 TGATAGCATGCATAAGTGATGAAGT 58.706 36.000 21.98 0.00 37.82 3.01
2737 3342 6.769341 TGATAGCATGCATAAGTGATGAAGTT 59.231 34.615 21.98 0.00 37.82 2.66
2738 3343 5.909621 AGCATGCATAAGTGATGAAGTTT 57.090 34.783 21.98 0.00 37.82 2.66
2739 3344 6.276832 AGCATGCATAAGTGATGAAGTTTT 57.723 33.333 21.98 0.00 37.82 2.43
2740 3345 7.395190 AGCATGCATAAGTGATGAAGTTTTA 57.605 32.000 21.98 0.00 37.82 1.52
2741 3346 7.478322 AGCATGCATAAGTGATGAAGTTTTAG 58.522 34.615 21.98 0.00 37.82 1.85
2742 3347 7.337689 AGCATGCATAAGTGATGAAGTTTTAGA 59.662 33.333 21.98 0.00 37.82 2.10
2743 3348 7.642978 GCATGCATAAGTGATGAAGTTTTAGAG 59.357 37.037 14.21 0.00 37.82 2.43
2744 3349 8.671921 CATGCATAAGTGATGAAGTTTTAGAGT 58.328 33.333 0.00 0.00 37.82 3.24
2745 3350 8.621532 TGCATAAGTGATGAAGTTTTAGAGTT 57.378 30.769 0.00 0.00 37.82 3.01
2746 3351 9.719355 TGCATAAGTGATGAAGTTTTAGAGTTA 57.281 29.630 0.00 0.00 37.82 2.24
2766 3371 8.944029 AGAGTTAAAGAACATGTCATGATGAAG 58.056 33.333 19.77 0.00 38.10 3.02
2814 3419 7.936496 TTTCTATGTAGCCACATCAATCAAA 57.064 32.000 0.00 0.00 44.42 2.69
2818 3423 6.778834 ATGTAGCCACATCAATCAAATCAA 57.221 33.333 0.00 0.00 41.75 2.57
2841 3446 3.370527 GGCAGCTCTCACCCTTATAAACA 60.371 47.826 0.00 0.00 0.00 2.83
2876 3481 9.987726 ACTATGAGATGGATATAAGTCAGATCA 57.012 33.333 0.00 0.00 0.00 2.92
2881 3486 8.183104 AGATGGATATAAGTCAGATCAACGAA 57.817 34.615 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 3.995506 AACTGGTGCCCTATGCCGC 62.996 63.158 0.00 0.00 40.16 6.53
62 63 1.819632 GAACTGGTGCCCTATGCCG 60.820 63.158 0.00 0.00 40.16 5.69
63 64 1.032114 GTGAACTGGTGCCCTATGCC 61.032 60.000 0.00 0.00 40.16 4.40
64 65 1.369091 CGTGAACTGGTGCCCTATGC 61.369 60.000 0.00 0.00 41.77 3.14
65 66 1.369091 GCGTGAACTGGTGCCCTATG 61.369 60.000 0.00 0.00 0.00 2.23
66 67 1.078426 GCGTGAACTGGTGCCCTAT 60.078 57.895 0.00 0.00 0.00 2.57
67 68 2.345991 GCGTGAACTGGTGCCCTA 59.654 61.111 0.00 0.00 0.00 3.53
68 69 4.643387 GGCGTGAACTGGTGCCCT 62.643 66.667 0.00 0.00 41.70 5.19
71 72 4.643387 AGGGGCGTGAACTGGTGC 62.643 66.667 0.00 0.00 0.00 5.01
72 73 2.358737 GAGGGGCGTGAACTGGTG 60.359 66.667 0.00 0.00 0.00 4.17
73 74 2.847234 TGAGGGGCGTGAACTGGT 60.847 61.111 0.00 0.00 0.00 4.00
74 75 2.358737 GTGAGGGGCGTGAACTGG 60.359 66.667 0.00 0.00 0.00 4.00
75 76 2.738521 CGTGAGGGGCGTGAACTG 60.739 66.667 0.00 0.00 0.00 3.16
76 77 2.915659 TCGTGAGGGGCGTGAACT 60.916 61.111 0.00 0.00 0.00 3.01
77 78 2.737376 GTCGTGAGGGGCGTGAAC 60.737 66.667 0.00 0.00 0.00 3.18
78 79 4.351938 CGTCGTGAGGGGCGTGAA 62.352 66.667 0.00 0.00 0.00 3.18
86 87 4.129737 ATGGCCGACGTCGTGAGG 62.130 66.667 33.49 20.51 37.74 3.86
87 88 2.579787 GATGGCCGACGTCGTGAG 60.580 66.667 33.49 20.86 37.74 3.51
88 89 3.047718 GAGATGGCCGACGTCGTGA 62.048 63.158 33.49 18.58 40.15 4.35
89 90 2.579787 GAGATGGCCGACGTCGTG 60.580 66.667 33.49 25.32 40.15 4.35
90 91 3.823330 GGAGATGGCCGACGTCGT 61.823 66.667 33.49 17.59 40.15 4.34
91 92 2.829043 TTTGGAGATGGCCGACGTCG 62.829 60.000 30.33 30.33 40.15 5.12
92 93 1.079405 TTTGGAGATGGCCGACGTC 60.079 57.895 5.18 5.18 35.24 4.34
93 94 1.079127 CTTTGGAGATGGCCGACGT 60.079 57.895 0.00 0.00 0.00 4.34
94 95 2.464459 GCTTTGGAGATGGCCGACG 61.464 63.158 0.00 0.00 0.00 5.12
95 96 2.115291 GGCTTTGGAGATGGCCGAC 61.115 63.158 0.00 0.00 35.08 4.79
96 97 1.925285 ATGGCTTTGGAGATGGCCGA 61.925 55.000 0.00 0.00 46.72 5.54
97 98 1.454479 ATGGCTTTGGAGATGGCCG 60.454 57.895 0.00 0.00 46.72 6.13
98 99 2.024590 GCATGGCTTTGGAGATGGCC 62.025 60.000 0.00 0.00 44.31 5.36
99 100 1.324740 TGCATGGCTTTGGAGATGGC 61.325 55.000 0.00 0.00 0.00 4.40
100 101 0.458669 GTGCATGGCTTTGGAGATGG 59.541 55.000 0.00 0.00 0.00 3.51
101 102 1.179152 TGTGCATGGCTTTGGAGATG 58.821 50.000 0.00 0.00 0.00 2.90
102 103 1.547372 GTTGTGCATGGCTTTGGAGAT 59.453 47.619 0.00 0.00 0.00 2.75
103 104 0.961019 GTTGTGCATGGCTTTGGAGA 59.039 50.000 0.00 0.00 0.00 3.71
104 105 0.037975 GGTTGTGCATGGCTTTGGAG 60.038 55.000 0.00 0.00 0.00 3.86
105 106 0.758310 TGGTTGTGCATGGCTTTGGA 60.758 50.000 0.00 0.00 0.00 3.53
106 107 0.320073 CTGGTTGTGCATGGCTTTGG 60.320 55.000 0.00 0.00 0.00 3.28
107 108 0.947180 GCTGGTTGTGCATGGCTTTG 60.947 55.000 0.00 0.00 0.00 2.77
108 109 1.117142 AGCTGGTTGTGCATGGCTTT 61.117 50.000 0.00 0.00 0.00 3.51
109 110 1.530013 GAGCTGGTTGTGCATGGCTT 61.530 55.000 0.00 0.00 0.00 4.35
110 111 1.975407 GAGCTGGTTGTGCATGGCT 60.975 57.895 0.00 0.00 0.00 4.75
111 112 2.570181 GAGCTGGTTGTGCATGGC 59.430 61.111 0.00 0.00 0.00 4.40
112 113 1.604308 TGGAGCTGGTTGTGCATGG 60.604 57.895 0.00 0.00 0.00 3.66
113 114 0.892358 AGTGGAGCTGGTTGTGCATG 60.892 55.000 0.00 0.00 0.00 4.06
114 115 0.892358 CAGTGGAGCTGGTTGTGCAT 60.892 55.000 0.00 0.00 41.42 3.96
115 116 1.526686 CAGTGGAGCTGGTTGTGCA 60.527 57.895 0.00 0.00 41.42 4.57
116 117 2.912624 GCAGTGGAGCTGGTTGTGC 61.913 63.158 0.00 0.00 45.14 4.57
117 118 3.348236 GCAGTGGAGCTGGTTGTG 58.652 61.111 0.00 0.00 45.14 3.33
179 180 4.452733 CTCGTCCACTTCGGGGCC 62.453 72.222 0.00 0.00 34.36 5.80
181 182 4.796231 CGCTCGTCCACTTCGGGG 62.796 72.222 0.00 0.00 34.36 5.73
182 183 3.744719 TCGCTCGTCCACTTCGGG 61.745 66.667 0.00 0.00 34.36 5.14
183 184 2.504244 GTCGCTCGTCCACTTCGG 60.504 66.667 0.00 0.00 0.00 4.30
184 185 2.870161 CGTCGCTCGTCCACTTCG 60.870 66.667 0.00 0.00 34.52 3.79
185 186 3.173240 GCGTCGCTCGTCCACTTC 61.173 66.667 10.68 0.00 42.13 3.01
194 195 4.117372 CAAACGGACGCGTCGCTC 62.117 66.667 30.99 17.51 0.00 5.03
197 198 4.409588 CAGCAAACGGACGCGTCG 62.410 66.667 30.99 26.50 0.00 5.12
198 199 3.277742 GACAGCAAACGGACGCGTC 62.278 63.158 30.67 30.67 0.00 5.19
199 200 3.335534 GACAGCAAACGGACGCGT 61.336 61.111 13.85 13.85 0.00 6.01
200 201 4.072088 GGACAGCAAACGGACGCG 62.072 66.667 3.53 3.53 0.00 6.01
201 202 4.072088 CGGACAGCAAACGGACGC 62.072 66.667 0.00 0.00 0.00 5.19
219 220 3.708734 GTCGTGTTTGGGTCGCGG 61.709 66.667 6.13 0.00 38.95 6.46
220 221 4.054455 CGTCGTGTTTGGGTCGCG 62.054 66.667 0.00 0.00 39.65 5.87
221 222 4.364409 GCGTCGTGTTTGGGTCGC 62.364 66.667 0.00 0.00 37.17 5.19
222 223 2.314647 ATGCGTCGTGTTTGGGTCG 61.315 57.895 0.00 0.00 0.00 4.79
223 224 1.206578 CATGCGTCGTGTTTGGGTC 59.793 57.895 0.00 0.00 0.00 4.46
224 225 1.098712 AACATGCGTCGTGTTTGGGT 61.099 50.000 10.40 0.00 40.16 4.51
225 226 1.652012 AACATGCGTCGTGTTTGGG 59.348 52.632 10.40 0.00 40.16 4.12
229 230 4.607024 GCAAACATGCGTCGTGTT 57.393 50.000 10.40 10.40 44.22 3.32
237 238 2.315011 TCATTTCGAACGCAAACATGC 58.685 42.857 0.00 0.00 0.00 4.06
238 239 3.554524 ACTCATTTCGAACGCAAACATG 58.445 40.909 0.00 0.00 0.00 3.21
239 240 3.664276 CGACTCATTTCGAACGCAAACAT 60.664 43.478 0.00 0.00 41.78 2.71
240 241 2.348125 CGACTCATTTCGAACGCAAACA 60.348 45.455 0.00 0.00 41.78 2.83
241 242 2.222624 CGACTCATTTCGAACGCAAAC 58.777 47.619 0.00 0.00 41.78 2.93
242 243 1.193650 CCGACTCATTTCGAACGCAAA 59.806 47.619 0.00 0.00 41.78 3.68
243 244 0.787787 CCGACTCATTTCGAACGCAA 59.212 50.000 0.00 0.00 41.78 4.85
244 245 0.319211 ACCGACTCATTTCGAACGCA 60.319 50.000 0.00 0.00 41.78 5.24
245 246 0.365859 GACCGACTCATTTCGAACGC 59.634 55.000 0.00 0.00 41.78 4.84
246 247 0.989890 GGACCGACTCATTTCGAACG 59.010 55.000 0.00 0.00 41.78 3.95
247 248 0.989890 CGGACCGACTCATTTCGAAC 59.010 55.000 8.64 0.00 41.78 3.95
248 249 0.108992 CCGGACCGACTCATTTCGAA 60.109 55.000 17.49 0.00 41.78 3.71
249 250 0.961857 TCCGGACCGACTCATTTCGA 60.962 55.000 17.49 0.00 41.78 3.71
250 251 0.801067 GTCCGGACCGACTCATTTCG 60.801 60.000 24.75 0.00 38.80 3.46
251 252 0.245539 TGTCCGGACCGACTCATTTC 59.754 55.000 31.19 2.51 33.70 2.17
252 253 0.037605 GTGTCCGGACCGACTCATTT 60.038 55.000 31.19 0.00 33.70 2.32
253 254 1.183030 TGTGTCCGGACCGACTCATT 61.183 55.000 31.19 0.00 32.78 2.57
254 255 1.183030 TTGTGTCCGGACCGACTCAT 61.183 55.000 31.19 0.00 36.46 2.90
255 256 1.393487 TTTGTGTCCGGACCGACTCA 61.393 55.000 31.19 18.21 35.17 3.41
256 257 0.249573 TTTTGTGTCCGGACCGACTC 60.250 55.000 31.19 16.03 33.70 3.36
257 258 0.531311 GTTTTGTGTCCGGACCGACT 60.531 55.000 31.19 0.00 33.70 4.18
258 259 1.824272 CGTTTTGTGTCCGGACCGAC 61.824 60.000 31.19 23.17 0.00 4.79
259 260 1.592131 CGTTTTGTGTCCGGACCGA 60.592 57.895 31.19 18.86 0.00 4.69
260 261 2.600475 CCGTTTTGTGTCCGGACCG 61.600 63.158 31.19 23.96 44.41 4.79
261 262 1.227615 TCCGTTTTGTGTCCGGACC 60.228 57.895 31.19 21.86 45.20 4.46
262 263 4.442018 TCCGTTTTGTGTCCGGAC 57.558 55.556 28.17 28.17 45.20 4.79
264 265 1.503818 CTGGTCCGTTTTGTGTCCGG 61.504 60.000 0.00 0.00 43.03 5.14
265 266 0.531090 TCTGGTCCGTTTTGTGTCCG 60.531 55.000 0.00 0.00 0.00 4.79
266 267 1.892209 ATCTGGTCCGTTTTGTGTCC 58.108 50.000 0.00 0.00 0.00 4.02
267 268 3.000727 CCTATCTGGTCCGTTTTGTGTC 58.999 50.000 0.00 0.00 0.00 3.67
268 269 3.053831 CCTATCTGGTCCGTTTTGTGT 57.946 47.619 0.00 0.00 0.00 3.72
280 281 0.689623 GATGGCCTGGACCTATCTGG 59.310 60.000 3.32 0.00 42.93 3.86
281 282 0.319728 CGATGGCCTGGACCTATCTG 59.680 60.000 3.32 0.00 0.00 2.90
282 283 1.476007 GCGATGGCCTGGACCTATCT 61.476 60.000 3.32 0.00 0.00 1.98
283 284 1.004440 GCGATGGCCTGGACCTATC 60.004 63.158 3.32 0.00 0.00 2.08
284 285 2.872388 CGCGATGGCCTGGACCTAT 61.872 63.158 0.00 0.00 35.02 2.57
285 286 3.536917 CGCGATGGCCTGGACCTA 61.537 66.667 0.00 0.00 35.02 3.08
309 310 2.764637 AAATGGACAGACCCCACGGC 62.765 60.000 0.00 0.00 36.36 5.68
310 311 0.251165 AAAATGGACAGACCCCACGG 60.251 55.000 0.00 0.00 36.36 4.94
311 312 2.081462 GTAAAATGGACAGACCCCACG 58.919 52.381 0.00 0.00 36.36 4.94
312 313 2.443416 GGTAAAATGGACAGACCCCAC 58.557 52.381 0.00 0.00 36.36 4.61
313 314 1.356398 GGGTAAAATGGACAGACCCCA 59.644 52.381 0.00 0.00 43.49 4.96
314 315 2.139323 GGGTAAAATGGACAGACCCC 57.861 55.000 0.00 0.00 43.49 4.95
316 317 4.393990 CGTTTAGGGTAAAATGGACAGACC 59.606 45.833 0.00 0.00 39.54 3.85
317 318 5.240121 TCGTTTAGGGTAAAATGGACAGAC 58.760 41.667 0.00 0.00 0.00 3.51
318 319 5.486735 TCGTTTAGGGTAAAATGGACAGA 57.513 39.130 0.00 0.00 0.00 3.41
319 320 5.390145 CGTTCGTTTAGGGTAAAATGGACAG 60.390 44.000 0.00 0.00 34.70 3.51
320 321 4.451774 CGTTCGTTTAGGGTAAAATGGACA 59.548 41.667 0.00 0.00 34.70 4.02
321 322 4.142838 CCGTTCGTTTAGGGTAAAATGGAC 60.143 45.833 0.00 0.00 32.60 4.02
322 323 4.002316 CCGTTCGTTTAGGGTAAAATGGA 58.998 43.478 0.00 0.00 0.00 3.41
323 324 3.127376 CCCGTTCGTTTAGGGTAAAATGG 59.873 47.826 0.00 0.00 40.27 3.16
324 325 3.127376 CCCCGTTCGTTTAGGGTAAAATG 59.873 47.826 0.00 0.00 43.58 2.32
325 326 3.346315 CCCCGTTCGTTTAGGGTAAAAT 58.654 45.455 0.00 0.00 43.58 1.82
326 327 2.777094 CCCCGTTCGTTTAGGGTAAAA 58.223 47.619 0.00 0.00 43.58 1.52
327 328 1.610363 GCCCCGTTCGTTTAGGGTAAA 60.610 52.381 0.00 0.00 43.58 2.01
328 329 0.036483 GCCCCGTTCGTTTAGGGTAA 60.036 55.000 0.00 0.00 43.58 2.85
329 330 1.596408 GCCCCGTTCGTTTAGGGTA 59.404 57.895 0.00 0.00 43.58 3.69
330 331 2.348620 GCCCCGTTCGTTTAGGGT 59.651 61.111 0.00 0.00 43.58 4.34
331 332 2.437180 GGCCCCGTTCGTTTAGGG 60.437 66.667 0.00 0.00 44.67 3.53
332 333 2.816520 CGGCCCCGTTCGTTTAGG 60.817 66.667 0.00 0.00 34.35 2.69
333 334 2.816520 CCGGCCCCGTTCGTTTAG 60.817 66.667 5.93 0.00 37.81 1.85
334 335 3.309506 TCCGGCCCCGTTCGTTTA 61.310 61.111 5.93 0.00 37.81 2.01
335 336 4.994471 GTCCGGCCCCGTTCGTTT 62.994 66.667 5.93 0.00 37.81 3.60
346 347 4.176752 GACCCCATCCTGTCCGGC 62.177 72.222 0.00 0.00 0.00 6.13
347 348 2.687200 TGACCCCATCCTGTCCGG 60.687 66.667 0.00 0.00 0.00 5.14
348 349 2.584608 GTGACCCCATCCTGTCCG 59.415 66.667 0.00 0.00 0.00 4.79
349 350 2.584608 CGTGACCCCATCCTGTCC 59.415 66.667 0.00 0.00 0.00 4.02
350 351 2.125106 GCGTGACCCCATCCTGTC 60.125 66.667 0.00 0.00 0.00 3.51
351 352 4.082523 CGCGTGACCCCATCCTGT 62.083 66.667 0.00 0.00 0.00 4.00
354 355 3.792053 CTAGCGCGTGACCCCATCC 62.792 68.421 8.43 0.00 0.00 3.51
355 356 2.279517 CTAGCGCGTGACCCCATC 60.280 66.667 8.43 0.00 0.00 3.51
356 357 2.758327 TCTAGCGCGTGACCCCAT 60.758 61.111 8.43 0.00 0.00 4.00
357 358 3.449227 CTCTAGCGCGTGACCCCA 61.449 66.667 8.43 0.00 0.00 4.96
358 359 3.003113 AACTCTAGCGCGTGACCCC 62.003 63.158 8.43 0.00 0.00 4.95
359 360 1.805945 CAACTCTAGCGCGTGACCC 60.806 63.158 8.43 0.00 0.00 4.46
360 361 1.805945 CCAACTCTAGCGCGTGACC 60.806 63.158 8.43 0.00 0.00 4.02
361 362 2.445438 GCCAACTCTAGCGCGTGAC 61.445 63.158 8.43 0.00 0.00 3.67
362 363 2.126071 GCCAACTCTAGCGCGTGA 60.126 61.111 8.43 3.16 0.00 4.35
363 364 2.279502 TAGGCCAACTCTAGCGCGTG 62.280 60.000 8.43 0.00 0.00 5.34
364 365 2.005960 CTAGGCCAACTCTAGCGCGT 62.006 60.000 8.43 0.00 0.00 6.01
365 366 1.299468 CTAGGCCAACTCTAGCGCG 60.299 63.158 5.01 0.00 0.00 6.86
366 367 0.460311 TTCTAGGCCAACTCTAGCGC 59.540 55.000 5.01 0.00 35.43 5.92
367 368 2.094182 TGTTTCTAGGCCAACTCTAGCG 60.094 50.000 5.01 0.00 35.43 4.26
368 369 3.611766 TGTTTCTAGGCCAACTCTAGC 57.388 47.619 5.01 0.00 35.43 3.42
369 370 4.872691 CACATGTTTCTAGGCCAACTCTAG 59.127 45.833 5.01 0.00 36.46 2.43
370 371 4.530553 TCACATGTTTCTAGGCCAACTCTA 59.469 41.667 5.01 0.00 0.00 2.43
371 372 3.327757 TCACATGTTTCTAGGCCAACTCT 59.672 43.478 5.01 0.00 0.00 3.24
372 373 3.674997 TCACATGTTTCTAGGCCAACTC 58.325 45.455 5.01 0.00 0.00 3.01
373 374 3.788227 TCACATGTTTCTAGGCCAACT 57.212 42.857 5.01 0.00 0.00 3.16
374 375 5.183904 AGAATTCACATGTTTCTAGGCCAAC 59.816 40.000 5.01 0.08 0.00 3.77
375 376 5.183713 CAGAATTCACATGTTTCTAGGCCAA 59.816 40.000 5.01 0.00 0.00 4.52
376 377 4.701651 CAGAATTCACATGTTTCTAGGCCA 59.298 41.667 5.01 0.00 0.00 5.36
377 378 4.943705 TCAGAATTCACATGTTTCTAGGCC 59.056 41.667 10.24 0.00 0.00 5.19
378 379 6.500684 TTCAGAATTCACATGTTTCTAGGC 57.499 37.500 10.24 0.00 0.00 3.93
379 380 7.966753 CACATTCAGAATTCACATGTTTCTAGG 59.033 37.037 10.24 2.46 0.00 3.02
380 381 7.484007 GCACATTCAGAATTCACATGTTTCTAG 59.516 37.037 10.24 6.47 0.00 2.43
381 382 7.307694 GCACATTCAGAATTCACATGTTTCTA 58.692 34.615 10.24 0.00 0.00 2.10
382 383 6.154445 GCACATTCAGAATTCACATGTTTCT 58.846 36.000 8.44 5.60 0.00 2.52
383 384 5.060077 CGCACATTCAGAATTCACATGTTTC 59.940 40.000 8.44 0.00 0.00 2.78
392 393 3.436704 TCTTCACCGCACATTCAGAATTC 59.563 43.478 0.00 0.00 0.00 2.17
424 425 4.870021 ATGCTCTAAAATGACCTTCCCT 57.130 40.909 0.00 0.00 0.00 4.20
425 426 4.706962 ACAATGCTCTAAAATGACCTTCCC 59.293 41.667 0.00 0.00 0.00 3.97
426 427 5.904362 ACAATGCTCTAAAATGACCTTCC 57.096 39.130 0.00 0.00 0.00 3.46
427 428 7.852945 CGATTACAATGCTCTAAAATGACCTTC 59.147 37.037 0.00 0.00 0.00 3.46
428 429 7.336931 ACGATTACAATGCTCTAAAATGACCTT 59.663 33.333 0.00 0.00 0.00 3.50
429 430 6.823689 ACGATTACAATGCTCTAAAATGACCT 59.176 34.615 0.00 0.00 0.00 3.85
430 431 6.907212 CACGATTACAATGCTCTAAAATGACC 59.093 38.462 0.00 0.00 0.00 4.02
431 432 7.684670 TCACGATTACAATGCTCTAAAATGAC 58.315 34.615 0.00 0.00 0.00 3.06
432 433 7.841915 TCACGATTACAATGCTCTAAAATGA 57.158 32.000 0.00 0.00 0.00 2.57
433 434 9.162793 GATTCACGATTACAATGCTCTAAAATG 57.837 33.333 0.00 0.00 0.00 2.32
434 435 9.113838 AGATTCACGATTACAATGCTCTAAAAT 57.886 29.630 0.00 0.00 0.00 1.82
435 436 8.492673 AGATTCACGATTACAATGCTCTAAAA 57.507 30.769 0.00 0.00 0.00 1.52
436 437 9.594478 TTAGATTCACGATTACAATGCTCTAAA 57.406 29.630 0.00 0.00 0.00 1.85
437 438 9.764363 ATTAGATTCACGATTACAATGCTCTAA 57.236 29.630 0.00 0.00 0.00 2.10
439 440 9.935241 ATATTAGATTCACGATTACAATGCTCT 57.065 29.630 0.00 0.00 0.00 4.09
440 441 9.964253 CATATTAGATTCACGATTACAATGCTC 57.036 33.333 0.00 0.00 0.00 4.26
441 442 8.939929 CCATATTAGATTCACGATTACAATGCT 58.060 33.333 0.00 0.00 0.00 3.79
442 443 8.721478 ACCATATTAGATTCACGATTACAATGC 58.279 33.333 0.00 0.00 0.00 3.56
445 446 9.419297 GCTACCATATTAGATTCACGATTACAA 57.581 33.333 0.00 0.00 0.00 2.41
446 447 8.803235 AGCTACCATATTAGATTCACGATTACA 58.197 33.333 0.00 0.00 0.00 2.41
447 448 9.291664 GAGCTACCATATTAGATTCACGATTAC 57.708 37.037 0.00 0.00 0.00 1.89
448 449 9.020731 TGAGCTACCATATTAGATTCACGATTA 57.979 33.333 0.00 0.00 0.00 1.75
449 450 7.896811 TGAGCTACCATATTAGATTCACGATT 58.103 34.615 0.00 0.00 0.00 3.34
450 451 7.468141 TGAGCTACCATATTAGATTCACGAT 57.532 36.000 0.00 0.00 0.00 3.73
451 452 6.894339 TGAGCTACCATATTAGATTCACGA 57.106 37.500 0.00 0.00 0.00 4.35
452 453 7.062722 CACATGAGCTACCATATTAGATTCACG 59.937 40.741 0.00 0.00 0.00 4.35
453 454 7.148507 GCACATGAGCTACCATATTAGATTCAC 60.149 40.741 7.97 0.00 0.00 3.18
454 455 6.875726 GCACATGAGCTACCATATTAGATTCA 59.124 38.462 7.97 0.00 0.00 2.57
455 456 7.102346 AGCACATGAGCTACCATATTAGATTC 58.898 38.462 16.52 0.00 44.50 2.52
456 457 7.013823 AGCACATGAGCTACCATATTAGATT 57.986 36.000 16.52 0.00 44.50 2.40
457 458 6.617782 AGCACATGAGCTACCATATTAGAT 57.382 37.500 16.52 0.00 44.50 1.98
458 459 6.721668 ACTAGCACATGAGCTACCATATTAGA 59.278 38.462 19.33 0.00 44.50 2.10
459 460 6.810676 CACTAGCACATGAGCTACCATATTAG 59.189 42.308 19.33 12.09 44.50 1.73
460 461 6.691508 CACTAGCACATGAGCTACCATATTA 58.308 40.000 19.33 0.70 44.50 0.98
461 462 5.545588 CACTAGCACATGAGCTACCATATT 58.454 41.667 19.33 0.00 44.50 1.28
462 463 4.562347 GCACTAGCACATGAGCTACCATAT 60.562 45.833 19.33 0.00 44.50 1.78
463 464 3.243873 GCACTAGCACATGAGCTACCATA 60.244 47.826 19.33 2.81 44.50 2.74
464 465 2.484417 GCACTAGCACATGAGCTACCAT 60.484 50.000 19.33 6.84 44.50 3.55
465 466 1.134699 GCACTAGCACATGAGCTACCA 60.135 52.381 19.33 3.53 44.50 3.25
466 467 1.576356 GCACTAGCACATGAGCTACC 58.424 55.000 19.33 8.41 44.50 3.18
478 479 3.855689 ACACATCCATTTTGCACTAGC 57.144 42.857 0.00 0.00 42.57 3.42
479 480 6.017605 GGATCTACACATCCATTTTGCACTAG 60.018 42.308 0.00 0.00 42.02 2.57
480 481 5.822519 GGATCTACACATCCATTTTGCACTA 59.177 40.000 0.00 0.00 42.02 2.74
481 482 4.641989 GGATCTACACATCCATTTTGCACT 59.358 41.667 0.00 0.00 42.02 4.40
482 483 4.398988 TGGATCTACACATCCATTTTGCAC 59.601 41.667 0.00 0.00 46.34 4.57
483 484 4.598022 TGGATCTACACATCCATTTTGCA 58.402 39.130 0.00 0.00 46.34 4.08
491 492 5.882557 ACAAGTTTGATGGATCTACACATCC 59.117 40.000 7.08 0.00 42.09 3.51
492 493 6.183360 CCACAAGTTTGATGGATCTACACATC 60.183 42.308 0.00 0.00 42.86 3.06
493 494 5.649395 CCACAAGTTTGATGGATCTACACAT 59.351 40.000 0.00 0.00 33.82 3.21
494 495 5.003160 CCACAAGTTTGATGGATCTACACA 58.997 41.667 0.00 0.00 33.82 3.72
495 496 5.003804 ACCACAAGTTTGATGGATCTACAC 58.996 41.667 15.56 0.00 35.09 2.90
496 497 5.241403 ACCACAAGTTTGATGGATCTACA 57.759 39.130 15.56 0.00 35.09 2.74
497 498 5.705441 TCAACCACAAGTTTGATGGATCTAC 59.295 40.000 15.56 0.00 36.18 2.59
498 499 5.875224 TCAACCACAAGTTTGATGGATCTA 58.125 37.500 15.56 0.00 36.18 1.98
499 500 4.728772 TCAACCACAAGTTTGATGGATCT 58.271 39.130 15.56 3.16 36.18 2.75
500 501 5.010012 AGTTCAACCACAAGTTTGATGGATC 59.990 40.000 15.56 0.00 36.18 3.36
501 502 4.895297 AGTTCAACCACAAGTTTGATGGAT 59.105 37.500 15.56 5.82 36.18 3.41
502 503 4.277476 AGTTCAACCACAAGTTTGATGGA 58.723 39.130 15.56 0.00 36.18 3.41
503 504 4.097741 TGAGTTCAACCACAAGTTTGATGG 59.902 41.667 0.00 5.60 36.18 3.51
504 505 5.036737 GTGAGTTCAACCACAAGTTTGATG 58.963 41.667 0.00 0.00 36.18 3.07
505 506 4.097892 GGTGAGTTCAACCACAAGTTTGAT 59.902 41.667 10.25 0.00 36.18 2.57
506 507 3.442273 GGTGAGTTCAACCACAAGTTTGA 59.558 43.478 10.25 0.00 36.18 2.69
507 508 3.443681 AGGTGAGTTCAACCACAAGTTTG 59.556 43.478 10.25 0.00 36.18 2.93
508 509 3.694566 GAGGTGAGTTCAACCACAAGTTT 59.305 43.478 10.25 0.00 36.18 2.66
509 510 3.279434 GAGGTGAGTTCAACCACAAGTT 58.721 45.455 10.25 0.00 40.16 2.66
510 511 2.421529 GGAGGTGAGTTCAACCACAAGT 60.422 50.000 10.25 0.00 32.98 3.16
511 512 2.222027 GGAGGTGAGTTCAACCACAAG 58.778 52.381 10.25 0.00 32.98 3.16
512 513 1.474320 CGGAGGTGAGTTCAACCACAA 60.474 52.381 10.25 0.00 32.98 3.33
513 514 0.105964 CGGAGGTGAGTTCAACCACA 59.894 55.000 10.25 0.00 32.98 4.17
514 515 2.914379 CGGAGGTGAGTTCAACCAC 58.086 57.895 0.00 1.60 32.98 4.16
528 529 5.954335 AGAGTTTCAAAATAAATGCCGGAG 58.046 37.500 5.05 0.00 0.00 4.63
529 530 5.975693 AGAGTTTCAAAATAAATGCCGGA 57.024 34.783 5.05 0.00 0.00 5.14
530 531 6.253512 GCTAAGAGTTTCAAAATAAATGCCGG 59.746 38.462 0.00 0.00 0.00 6.13
531 532 6.021468 CGCTAAGAGTTTCAAAATAAATGCCG 60.021 38.462 0.00 0.00 0.00 5.69
532 533 6.253512 CCGCTAAGAGTTTCAAAATAAATGCC 59.746 38.462 0.00 0.00 0.00 4.40
533 534 7.008357 GTCCGCTAAGAGTTTCAAAATAAATGC 59.992 37.037 0.00 0.00 0.00 3.56
534 535 8.237267 AGTCCGCTAAGAGTTTCAAAATAAATG 58.763 33.333 0.00 0.00 0.00 2.32
535 536 8.336801 AGTCCGCTAAGAGTTTCAAAATAAAT 57.663 30.769 0.00 0.00 0.00 1.40
536 537 7.739498 AGTCCGCTAAGAGTTTCAAAATAAA 57.261 32.000 0.00 0.00 0.00 1.40
537 538 8.879759 CATAGTCCGCTAAGAGTTTCAAAATAA 58.120 33.333 0.00 0.00 0.00 1.40
538 539 8.038944 ACATAGTCCGCTAAGAGTTTCAAAATA 58.961 33.333 0.00 0.00 0.00 1.40
539 540 6.879458 ACATAGTCCGCTAAGAGTTTCAAAAT 59.121 34.615 0.00 0.00 0.00 1.82
540 541 6.228258 ACATAGTCCGCTAAGAGTTTCAAAA 58.772 36.000 0.00 0.00 0.00 2.44
541 542 5.790593 ACATAGTCCGCTAAGAGTTTCAAA 58.209 37.500 0.00 0.00 0.00 2.69
542 543 5.401531 ACATAGTCCGCTAAGAGTTTCAA 57.598 39.130 0.00 0.00 0.00 2.69
543 544 6.152323 ACTTACATAGTCCGCTAAGAGTTTCA 59.848 38.462 0.00 0.00 28.23 2.69
544 545 6.472808 CACTTACATAGTCCGCTAAGAGTTTC 59.527 42.308 0.00 0.00 33.85 2.78
545 546 6.071503 ACACTTACATAGTCCGCTAAGAGTTT 60.072 38.462 0.00 0.00 33.85 2.66
546 547 5.418209 ACACTTACATAGTCCGCTAAGAGTT 59.582 40.000 0.00 0.00 33.85 3.01
547 548 4.948621 ACACTTACATAGTCCGCTAAGAGT 59.051 41.667 0.00 0.00 33.85 3.24
548 549 5.502153 ACACTTACATAGTCCGCTAAGAG 57.498 43.478 0.00 0.00 33.85 2.85
549 550 5.416639 TCAACACTTACATAGTCCGCTAAGA 59.583 40.000 0.00 0.00 33.85 2.10
550 551 5.647589 TCAACACTTACATAGTCCGCTAAG 58.352 41.667 0.00 0.00 33.85 2.18
551 552 5.648178 TCAACACTTACATAGTCCGCTAA 57.352 39.130 0.00 0.00 33.85 3.09
552 553 5.847111 ATCAACACTTACATAGTCCGCTA 57.153 39.130 0.00 0.00 33.85 4.26
553 554 4.737855 ATCAACACTTACATAGTCCGCT 57.262 40.909 0.00 0.00 33.85 5.52
554 555 6.897259 TTAATCAACACTTACATAGTCCGC 57.103 37.500 0.00 0.00 33.85 5.54
581 582 9.750783 AAGATCATCATGGCTAGCTTTATTTAT 57.249 29.630 15.72 1.61 0.00 1.40
582 583 9.578576 AAAGATCATCATGGCTAGCTTTATTTA 57.421 29.630 15.72 0.00 0.00 1.40
583 584 8.474710 AAAGATCATCATGGCTAGCTTTATTT 57.525 30.769 15.72 0.42 0.00 1.40
584 585 8.474710 AAAAGATCATCATGGCTAGCTTTATT 57.525 30.769 15.72 0.00 0.00 1.40
585 586 7.943447 AGAAAAGATCATCATGGCTAGCTTTAT 59.057 33.333 15.72 4.31 0.00 1.40
586 587 7.285566 AGAAAAGATCATCATGGCTAGCTTTA 58.714 34.615 15.72 1.83 0.00 1.85
587 588 6.127793 AGAAAAGATCATCATGGCTAGCTTT 58.872 36.000 15.72 2.20 0.00 3.51
588 589 5.692928 AGAAAAGATCATCATGGCTAGCTT 58.307 37.500 15.72 0.00 0.00 3.74
589 590 5.307544 AGAAAAGATCATCATGGCTAGCT 57.692 39.130 15.72 0.00 0.00 3.32
590 591 7.502120 TTAAGAAAAGATCATCATGGCTAGC 57.498 36.000 6.04 6.04 0.00 3.42
616 617 4.263949 CCTCTATCCCTCTGGGTTGTTTTT 60.264 45.833 2.25 0.00 44.74 1.94
617 618 3.267031 CCTCTATCCCTCTGGGTTGTTTT 59.733 47.826 2.25 0.00 44.74 2.43
618 619 2.846827 CCTCTATCCCTCTGGGTTGTTT 59.153 50.000 2.25 0.00 44.74 2.83
678 679 7.717436 TCAATGACTTGTTAACTGACACCATAA 59.283 33.333 7.22 0.00 33.87 1.90
680 681 6.017109 GTCAATGACTTGTTAACTGACACCAT 60.017 38.462 6.07 5.46 33.54 3.55
683 684 6.422223 CAGTCAATGACTTGTTAACTGACAC 58.578 40.000 13.99 4.77 41.37 3.67
706 709 2.247372 TCTCCACTCAGTCCATATCCCA 59.753 50.000 0.00 0.00 0.00 4.37
715 718 1.142748 CCGGCATCTCCACTCAGTC 59.857 63.158 0.00 0.00 34.01 3.51
721 724 0.180406 ATTGGTACCGGCATCTCCAC 59.820 55.000 7.57 0.00 34.01 4.02
794 798 3.005539 GACTGGAGCTGGCCTGGA 61.006 66.667 12.06 0.00 0.00 3.86
840 845 6.313905 CGGGATAATCTGGTCAGCAAATATAC 59.686 42.308 0.00 0.00 0.00 1.47
849 854 1.051812 AGGCGGGATAATCTGGTCAG 58.948 55.000 0.00 0.00 0.00 3.51
865 870 2.169769 TGGTACTTATAGTGCACCAGGC 59.830 50.000 14.63 2.82 33.23 4.85
927 934 0.239347 GTGTGCAGTCTTGTGGATGC 59.761 55.000 0.00 0.00 39.14 3.91
978 985 0.396435 TGAATTGGTGACGGTGAGCT 59.604 50.000 0.00 0.00 0.00 4.09
984 991 0.810648 CCATGGTGAATTGGTGACGG 59.189 55.000 2.57 0.00 0.00 4.79
1040 1047 3.360423 ATGGTCTCCGCCCTCTCGA 62.360 63.158 0.00 0.00 0.00 4.04
2047 2495 4.214545 TGACACCGAACCAATCACAATTAC 59.785 41.667 0.00 0.00 0.00 1.89
2151 2692 3.034721 TGGTGGAACGATGTTACTGAC 57.965 47.619 0.00 0.00 38.12 3.51
2166 2707 3.194116 CCTTGGTTGATCTGATTTGGTGG 59.806 47.826 0.00 0.00 0.00 4.61
2173 2714 3.401385 AGGGATCCTTGGTTGATCTGAT 58.599 45.455 12.58 0.00 38.89 2.90
2184 2725 9.822185 CAAAATTTCCTTTTATAGGGATCCTTG 57.178 33.333 12.58 0.00 44.86 3.61
2218 2773 3.254892 GGAGATGTTCTGTTTCTCGTCC 58.745 50.000 0.00 0.00 37.38 4.79
2341 2898 7.721286 ATTCTTAATCATTCACATCGAGACC 57.279 36.000 0.00 0.00 0.00 3.85
2362 2919 6.155475 AGCACCTTGTATCAGAGAGTATTC 57.845 41.667 0.00 0.00 0.00 1.75
2428 2991 3.895998 TGCACCAATTGGATGTATGCTA 58.104 40.909 31.22 15.79 38.94 3.49
2441 3004 8.065473 TGTATGTTTCTTAATCATGCACCAAT 57.935 30.769 0.00 0.00 31.53 3.16
2445 3008 7.028962 TGCTTGTATGTTTCTTAATCATGCAC 58.971 34.615 0.00 0.00 34.92 4.57
2539 3144 1.817447 ACACTACTCACCTTCGCCTAC 59.183 52.381 0.00 0.00 0.00 3.18
2550 3155 2.615986 TAGGCCTTCCACACTACTCA 57.384 50.000 12.58 0.00 33.74 3.41
2561 3166 3.614390 GCATAGTGTACGGATAGGCCTTC 60.614 52.174 12.58 8.59 0.00 3.46
2563 3168 1.893801 GCATAGTGTACGGATAGGCCT 59.106 52.381 11.78 11.78 0.00 5.19
2571 3176 0.535335 AGTGGTGGCATAGTGTACGG 59.465 55.000 0.00 0.00 0.00 4.02
2587 3192 5.359860 GGGATGTTTTTACCCCTTATGAGTG 59.640 44.000 0.00 0.00 37.85 3.51
2590 3195 5.254267 TCAGGGATGTTTTTACCCCTTATGA 59.746 40.000 0.00 0.00 46.57 2.15
2609 3214 0.322456 TTTGGAGCGAATGGTCAGGG 60.322 55.000 0.00 0.00 44.47 4.45
2614 3219 0.039618 ATGGGTTTGGAGCGAATGGT 59.960 50.000 0.00 0.00 0.00 3.55
2619 3224 0.687920 TGTGTATGGGTTTGGAGCGA 59.312 50.000 0.00 0.00 0.00 4.93
2649 3254 5.964887 ACGATTGAAACAACAACCATTTG 57.035 34.783 0.00 0.00 38.83 2.32
2659 3264 8.616942 TGATCTTCTTTACAACGATTGAAACAA 58.383 29.630 0.00 0.00 0.00 2.83
2674 3279 4.081142 TGGCTCCATTCGTGATCTTCTTTA 60.081 41.667 0.00 0.00 0.00 1.85
2690 3295 2.292257 ACTGGTCTATACACTGGCTCCA 60.292 50.000 0.00 0.00 0.00 3.86
2701 3306 5.806654 TGCATGCTATCAACTGGTCTATA 57.193 39.130 20.33 0.00 0.00 1.31
2717 3322 7.475015 TCTAAAACTTCATCACTTATGCATGC 58.525 34.615 11.82 11.82 35.38 4.06
2738 3343 9.942850 TCATCATGACATGTTCTTTAACTCTAA 57.057 29.630 14.98 0.00 36.51 2.10
2739 3344 9.942850 TTCATCATGACATGTTCTTTAACTCTA 57.057 29.630 14.98 0.00 36.51 2.43
2740 3345 8.853077 TTCATCATGACATGTTCTTTAACTCT 57.147 30.769 14.98 0.00 36.51 3.24
2741 3346 8.725148 ACTTCATCATGACATGTTCTTTAACTC 58.275 33.333 14.98 0.00 36.51 3.01
2742 3347 8.627208 ACTTCATCATGACATGTTCTTTAACT 57.373 30.769 14.98 0.00 36.51 2.24
2743 3348 9.683069 AAACTTCATCATGACATGTTCTTTAAC 57.317 29.630 14.98 0.00 36.07 2.01
2746 3351 9.903682 CTAAAACTTCATCATGACATGTTCTTT 57.096 29.630 14.98 8.68 0.00 2.52
2747 3352 9.288576 TCTAAAACTTCATCATGACATGTTCTT 57.711 29.630 14.98 3.70 0.00 2.52
2748 3353 8.853077 TCTAAAACTTCATCATGACATGTTCT 57.147 30.769 14.98 0.00 0.00 3.01
2749 3354 8.725148 ACTCTAAAACTTCATCATGACATGTTC 58.275 33.333 14.98 0.00 0.00 3.18
2750 3355 8.627208 ACTCTAAAACTTCATCATGACATGTT 57.373 30.769 14.98 4.24 0.00 2.71
2751 3356 8.627208 AACTCTAAAACTTCATCATGACATGT 57.373 30.769 14.98 0.00 0.00 3.21
2780 3385 6.316140 TGTGGCTACATAGAAATGACATGTTC 59.684 38.462 0.00 0.00 36.54 3.18
2814 3419 0.913451 AGGGTGAGAGCTGCCTTGAT 60.913 55.000 0.00 0.00 0.00 2.57
2818 3423 2.478872 TATAAGGGTGAGAGCTGCCT 57.521 50.000 0.00 0.00 0.00 4.75
2854 3459 7.448469 TCGTTGATCTGACTTATATCCATCTCA 59.552 37.037 0.00 0.00 0.00 3.27
2872 3477 8.889717 TCTTTTATAGGGAAACATTCGTTGATC 58.110 33.333 0.00 0.00 34.86 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.