Multiple sequence alignment - TraesCS1A01G088700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G088700 chr1A 100.000 4124 0 0 1 4124 77077318 77073195 0.000000e+00 7616.0
1 TraesCS1A01G088700 chr1A 96.552 261 9 0 3390 3650 358543293 358543553 2.280000e-117 433.0
2 TraesCS1A01G088700 chr1A 75.884 311 58 13 2761 3064 541772132 541772432 4.300000e-30 143.0
3 TraesCS1A01G088700 chr1A 83.465 127 17 4 1796 1920 541770987 541771111 9.370000e-22 115.0
4 TraesCS1A01G088700 chr1A 79.137 139 27 2 1464 1601 56337699 56337836 1.220000e-15 95.3
5 TraesCS1A01G088700 chr1B 88.595 1850 94 52 404 2152 119775596 119773763 0.000000e+00 2139.0
6 TraesCS1A01G088700 chr1B 91.979 773 47 5 2388 3157 119773402 119772642 0.000000e+00 1070.0
7 TraesCS1A01G088700 chr1B 90.196 255 17 7 2149 2400 119773677 119773428 3.980000e-85 326.0
8 TraesCS1A01G088700 chr1B 91.364 220 19 0 1 220 119775811 119775592 6.700000e-78 302.0
9 TraesCS1A01G088700 chr1B 90.155 193 10 3 3932 4124 119768869 119768686 4.120000e-60 243.0
10 TraesCS1A01G088700 chr1B 93.443 122 8 0 3163 3284 119772585 119772464 9.110000e-42 182.0
11 TraesCS1A01G088700 chr1B 74.675 308 63 12 2763 3063 608951518 608951817 5.600000e-24 122.0
12 TraesCS1A01G088700 chr1B 83.465 127 17 4 1796 1920 608950395 608950519 9.370000e-22 115.0
13 TraesCS1A01G088700 chr1B 80.992 121 21 2 1485 1604 91882015 91881896 1.220000e-15 95.3
14 TraesCS1A01G088700 chr1B 92.308 52 1 1 3861 3909 119768971 119768920 2.060000e-08 71.3
15 TraesCS1A01G088700 chr1D 91.825 685 38 7 738 1411 76459283 76458606 0.000000e+00 939.0
16 TraesCS1A01G088700 chr1D 91.483 634 31 12 1454 2069 76458363 76457735 0.000000e+00 850.0
17 TraesCS1A01G088700 chr1D 90.061 654 38 4 2761 3388 76456614 76455962 0.000000e+00 822.0
18 TraesCS1A01G088700 chr1D 90.649 385 30 2 2384 2768 76457087 76456709 1.320000e-139 507.0
19 TraesCS1A01G088700 chr1D 90.455 220 19 2 1 220 76472584 76472367 5.220000e-74 289.0
20 TraesCS1A01G088700 chr1D 95.783 166 7 0 2150 2315 76457378 76457213 6.800000e-68 268.0
21 TraesCS1A01G088700 chr1D 93.143 175 4 3 3957 4124 76454471 76454298 2.460000e-62 250.0
22 TraesCS1A01G088700 chr1D 86.000 200 23 5 548 742 76460094 76459895 4.180000e-50 209.0
23 TraesCS1A01G088700 chr1D 97.895 95 1 1 2059 2152 76457559 76457465 3.300000e-36 163.0
24 TraesCS1A01G088700 chr1D 75.244 307 63 10 2763 3064 445590198 445590496 2.590000e-27 134.0
25 TraesCS1A01G088700 chr1D 91.398 93 5 1 404 493 76472371 76472279 1.560000e-24 124.0
26 TraesCS1A01G088700 chr1D 84.252 127 16 4 1796 1920 445589090 445589214 2.010000e-23 121.0
27 TraesCS1A01G088700 chr1D 81.818 121 20 2 1485 1604 56429714 56429595 2.620000e-17 100.0
28 TraesCS1A01G088700 chr1D 96.078 51 2 0 3866 3916 76454750 76454700 2.640000e-12 84.2
29 TraesCS1A01G088700 chrUn 97.358 265 7 0 3386 3650 71293722 71293458 6.290000e-123 451.0
30 TraesCS1A01G088700 chr5A 96.552 261 9 0 3390 3650 447522138 447521878 2.280000e-117 433.0
31 TraesCS1A01G088700 chr5A 80.916 131 21 4 1796 1924 365600023 365600151 2.620000e-17 100.0
32 TraesCS1A01G088700 chr2A 96.552 261 9 0 3390 3650 101031588 101031328 2.280000e-117 433.0
33 TraesCS1A01G088700 chr2A 96.552 261 9 0 3390 3650 467248999 467248739 2.280000e-117 433.0
34 TraesCS1A01G088700 chr2A 95.849 265 11 0 3386 3650 725658202 725658466 2.950000e-116 429.0
35 TraesCS1A01G088700 chr3A 95.880 267 10 1 3385 3650 58274808 58275074 8.190000e-117 431.0
36 TraesCS1A01G088700 chr6A 95.506 267 12 0 3386 3652 97632106 97632372 1.060000e-115 427.0
37 TraesCS1A01G088700 chr4A 94.834 271 14 0 3389 3659 13331429 13331159 1.370000e-114 424.0
38 TraesCS1A01G088700 chr5D 93.299 194 9 4 216 408 97475881 97476071 2.430000e-72 283.0
39 TraesCS1A01G088700 chr5D 92.386 197 9 6 210 403 149772588 149772395 4.060000e-70 276.0
40 TraesCS1A01G088700 chr5D 85.714 98 14 0 1471 1568 415679013 415679110 2.030000e-18 104.0
41 TraesCS1A01G088700 chr5D 93.846 65 4 0 516 580 229140823 229140887 9.430000e-17 99.0
42 TraesCS1A01G088700 chr3D 93.651 189 9 3 220 407 3541887 3542073 3.140000e-71 279.0
43 TraesCS1A01G088700 chr3B 94.054 185 8 3 220 403 94280786 94280604 1.130000e-70 278.0
44 TraesCS1A01G088700 chr6D 93.158 190 9 4 219 406 399222108 399222295 4.060000e-70 276.0
45 TraesCS1A01G088700 chr6D 83.333 78 13 0 2119 2196 426336791 426336868 5.720000e-09 73.1
46 TraesCS1A01G088700 chr2B 92.746 193 10 4 219 410 458962474 458962285 4.060000e-70 276.0
47 TraesCS1A01G088700 chr2B 77.564 156 31 3 1778 1931 468552440 468552287 1.580000e-14 91.6
48 TraesCS1A01G088700 chr4B 93.122 189 9 4 221 408 26626756 26626941 1.460000e-69 274.0
49 TraesCS1A01G088700 chr4D 91.837 196 13 2 218 413 508931214 508931022 1.890000e-68 270.0
50 TraesCS1A01G088700 chr2D 90.338 207 14 5 219 422 26038541 26038744 2.440000e-67 267.0
51 TraesCS1A01G088700 chr7A 85.217 115 15 2 1478 1591 96051658 96051545 2.600000e-22 117.0
52 TraesCS1A01G088700 chr7D 84.348 115 16 2 1478 1591 93033667 93033554 1.210000e-20 111.0
53 TraesCS1A01G088700 chr7B 84.348 115 16 2 1478 1591 45641846 45641733 1.210000e-20 111.0
54 TraesCS1A01G088700 chr5B 81.343 134 21 4 1796 1927 314193462 314193331 5.640000e-19 106.0
55 TraesCS1A01G088700 chr5B 80.916 131 21 4 1796 1924 314277201 314277329 2.620000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G088700 chr1A 77073195 77077318 4123 True 7616.000000 7616 100.000000 1 4124 1 chr1A.!!$R1 4123
1 TraesCS1A01G088700 chr1B 119768686 119775811 7125 True 619.042857 2139 91.148571 1 4124 7 chr1B.!!$R2 4123
2 TraesCS1A01G088700 chr1D 76454298 76460094 5796 True 454.688889 939 92.546333 548 4124 9 chr1D.!!$R2 3576

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
402 403 0.249699 CTTTGAAACCAAACGCCCCC 60.250 55.0 0.0 0.0 31.01 5.40 F
1938 2851 0.246635 TAGTGCTCAAGGAAGACGGC 59.753 55.0 0.0 0.0 0.00 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2322 3519 0.107066 TGGAGGCATGCATGAATCGT 60.107 50.0 30.64 13.82 0.00 3.73 R
3593 6341 0.030638 TGCCGAAAGTCAAGCTTTGC 59.969 50.0 0.00 0.00 46.54 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 4.211389 CGAGTGCGCCACATATTTTTATC 58.789 43.478 4.18 0.00 36.74 1.75
59 60 6.320164 TGCGCCACATATTTTTATCTAAACCT 59.680 34.615 4.18 0.00 0.00 3.50
96 97 0.948678 CGGGTATATTTGGCCAACCG 59.051 55.000 23.46 23.46 39.70 4.44
105 106 2.360600 GGCCAACCGTGTGCCATA 60.361 61.111 0.00 0.00 39.55 2.74
119 120 6.035843 CGTGTGCCATAAAAATTTAGCATCT 58.964 36.000 0.00 0.00 30.11 2.90
124 125 7.221452 GTGCCATAAAAATTTAGCATCTCACAG 59.779 37.037 0.00 0.00 30.11 3.66
148 149 4.396790 ACATTTGTATTTATCAACCCGCGT 59.603 37.500 4.92 0.00 0.00 6.01
153 154 2.102070 TTTATCAACCCGCGTGATGT 57.898 45.000 17.96 1.93 36.41 3.06
164 165 3.400995 CCGCGTGATGTAAAGTTTAACG 58.599 45.455 4.92 11.46 0.00 3.18
167 168 3.364167 GCGTGATGTAAAGTTTAACGCCA 60.364 43.478 22.88 8.23 46.63 5.69
170 171 5.615984 CGTGATGTAAAGTTTAACGCCACAT 60.616 40.000 9.85 9.85 0.00 3.21
179 180 4.022762 AGTTTAACGCCACATGCATTTGTA 60.023 37.500 11.72 0.00 41.33 2.41
215 216 3.963676 TGCAAAGTTGGCATCACAC 57.036 47.368 0.00 0.00 36.11 3.82
216 217 1.109609 TGCAAAGTTGGCATCACACA 58.890 45.000 0.00 0.00 36.11 3.72
217 218 1.687660 TGCAAAGTTGGCATCACACAT 59.312 42.857 0.00 0.00 36.11 3.21
218 219 2.889678 TGCAAAGTTGGCATCACACATA 59.110 40.909 0.00 0.00 36.11 2.29
219 220 3.057386 TGCAAAGTTGGCATCACACATAG 60.057 43.478 0.00 0.00 36.11 2.23
220 221 3.674138 GCAAAGTTGGCATCACACATAGG 60.674 47.826 0.00 0.00 0.00 2.57
221 222 3.439857 AAGTTGGCATCACACATAGGT 57.560 42.857 0.00 0.00 0.00 3.08
229 230 4.424061 CATCACACATAGGTGGTGTTTG 57.576 45.455 12.79 0.56 46.75 2.93
230 231 2.857483 TCACACATAGGTGGTGTTTGG 58.143 47.619 12.79 0.00 46.75 3.28
231 232 2.173782 TCACACATAGGTGGTGTTTGGT 59.826 45.455 12.79 0.00 46.75 3.67
232 233 2.955660 CACACATAGGTGGTGTTTGGTT 59.044 45.455 12.79 0.00 46.75 3.67
233 234 3.004315 CACACATAGGTGGTGTTTGGTTC 59.996 47.826 12.79 0.00 46.75 3.62
234 235 3.117663 ACACATAGGTGGTGTTTGGTTCT 60.118 43.478 12.79 0.00 46.75 3.01
235 236 3.502211 CACATAGGTGGTGTTTGGTTCTC 59.498 47.826 0.00 0.00 41.45 2.87
236 237 3.394606 ACATAGGTGGTGTTTGGTTCTCT 59.605 43.478 0.00 0.00 0.00 3.10
237 238 4.595781 ACATAGGTGGTGTTTGGTTCTCTA 59.404 41.667 0.00 0.00 0.00 2.43
238 239 3.771577 AGGTGGTGTTTGGTTCTCTAG 57.228 47.619 0.00 0.00 0.00 2.43
239 240 3.046374 AGGTGGTGTTTGGTTCTCTAGT 58.954 45.455 0.00 0.00 0.00 2.57
240 241 3.071167 AGGTGGTGTTTGGTTCTCTAGTC 59.929 47.826 0.00 0.00 0.00 2.59
241 242 3.400255 GTGGTGTTTGGTTCTCTAGTCC 58.600 50.000 0.00 0.00 0.00 3.85
242 243 3.071167 GTGGTGTTTGGTTCTCTAGTCCT 59.929 47.826 0.00 0.00 0.00 3.85
243 244 4.282703 GTGGTGTTTGGTTCTCTAGTCCTA 59.717 45.833 0.00 0.00 0.00 2.94
244 245 4.527038 TGGTGTTTGGTTCTCTAGTCCTAG 59.473 45.833 0.00 0.00 34.56 3.02
245 246 4.081586 GGTGTTTGGTTCTCTAGTCCTAGG 60.082 50.000 0.82 0.82 34.06 3.02
246 247 4.771054 GTGTTTGGTTCTCTAGTCCTAGGA 59.229 45.833 7.62 7.62 34.06 2.94
247 248 4.771054 TGTTTGGTTCTCTAGTCCTAGGAC 59.229 45.833 31.29 31.29 44.86 3.85
261 262 5.409211 GTCCTAGGACTTTTTCTAGTTCCG 58.591 45.833 31.12 0.00 41.57 4.30
262 263 4.081807 TCCTAGGACTTTTTCTAGTTCCGC 60.082 45.833 7.62 0.00 33.10 5.54
263 264 4.081586 CCTAGGACTTTTTCTAGTTCCGCT 60.082 45.833 1.05 0.00 33.10 5.52
264 265 5.126707 CCTAGGACTTTTTCTAGTTCCGCTA 59.873 44.000 1.05 0.00 33.10 4.26
265 266 5.074584 AGGACTTTTTCTAGTTCCGCTAG 57.925 43.478 0.00 0.00 46.59 3.42
278 279 6.445357 AGTTCCGCTAGACTTTTTGAAAAA 57.555 33.333 2.83 2.83 0.00 1.94
279 280 6.495706 AGTTCCGCTAGACTTTTTGAAAAAG 58.504 36.000 24.36 24.36 0.00 2.27
280 281 6.317893 AGTTCCGCTAGACTTTTTGAAAAAGA 59.682 34.615 30.55 12.38 0.00 2.52
281 282 6.056428 TCCGCTAGACTTTTTGAAAAAGAC 57.944 37.500 30.55 25.08 0.00 3.01
282 283 5.820947 TCCGCTAGACTTTTTGAAAAAGACT 59.179 36.000 30.55 29.26 36.53 3.24
283 284 6.018180 TCCGCTAGACTTTTTGAAAAAGACTC 60.018 38.462 30.55 20.35 34.90 3.36
284 285 6.017852 CCGCTAGACTTTTTGAAAAAGACTCT 60.018 38.462 30.55 24.81 34.90 3.24
285 286 7.066505 CGCTAGACTTTTTGAAAAAGACTCTC 58.933 38.462 30.55 22.12 34.90 3.20
286 287 7.254455 CGCTAGACTTTTTGAAAAAGACTCTCA 60.254 37.037 30.55 16.65 34.90 3.27
287 288 8.398665 GCTAGACTTTTTGAAAAAGACTCTCAA 58.601 33.333 30.55 16.36 34.90 3.02
288 289 9.928236 CTAGACTTTTTGAAAAAGACTCTCAAG 57.072 33.333 30.55 20.42 34.90 3.02
289 290 8.567285 AGACTTTTTGAAAAAGACTCTCAAGA 57.433 30.769 30.55 0.00 31.11 3.02
290 291 9.014297 AGACTTTTTGAAAAAGACTCTCAAGAA 57.986 29.630 30.55 0.00 31.11 2.52
291 292 9.283420 GACTTTTTGAAAAAGACTCTCAAGAAG 57.717 33.333 30.55 16.01 42.55 2.85
292 293 8.246871 ACTTTTTGAAAAAGACTCTCAAGAAGG 58.753 33.333 30.55 6.26 41.80 3.46
293 294 7.703058 TTTTGAAAAAGACTCTCAAGAAGGT 57.297 32.000 0.00 0.00 31.11 3.50
294 295 6.683974 TTGAAAAAGACTCTCAAGAAGGTG 57.316 37.500 0.00 0.00 0.00 4.00
295 296 4.576463 TGAAAAAGACTCTCAAGAAGGTGC 59.424 41.667 0.00 0.00 0.00 5.01
296 297 4.429854 AAAAGACTCTCAAGAAGGTGCT 57.570 40.909 0.00 0.00 0.00 4.40
297 298 4.429854 AAAGACTCTCAAGAAGGTGCTT 57.570 40.909 0.00 0.00 0.00 3.91
298 299 3.676291 AGACTCTCAAGAAGGTGCTTC 57.324 47.619 0.00 0.00 40.45 3.86
311 312 6.729391 GAAGGTGCTTCTAAGGACTTTTAG 57.271 41.667 11.87 0.00 44.37 1.85
312 313 4.580868 AGGTGCTTCTAAGGACTTTTAGC 58.419 43.478 13.12 0.00 45.42 3.09
313 314 4.041691 AGGTGCTTCTAAGGACTTTTAGCA 59.958 41.667 13.12 9.74 45.42 3.49
314 315 4.760204 GGTGCTTCTAAGGACTTTTAGCAA 59.240 41.667 13.12 1.75 45.42 3.91
315 316 5.240844 GGTGCTTCTAAGGACTTTTAGCAAA 59.759 40.000 13.12 0.00 45.42 3.68
316 317 6.238925 GGTGCTTCTAAGGACTTTTAGCAAAA 60.239 38.462 13.12 0.00 45.42 2.44
317 318 7.200455 GTGCTTCTAAGGACTTTTAGCAAAAA 58.800 34.615 7.07 0.00 43.15 1.94
348 349 6.983474 AAAAATCTCACCTTGTTTGGTTTG 57.017 33.333 0.00 0.00 38.45 2.93
349 350 3.733443 ATCTCACCTTGTTTGGTTTGC 57.267 42.857 0.00 0.00 38.45 3.68
350 351 2.733956 TCTCACCTTGTTTGGTTTGCT 58.266 42.857 0.00 0.00 38.45 3.91
351 352 3.892284 TCTCACCTTGTTTGGTTTGCTA 58.108 40.909 0.00 0.00 38.45 3.49
352 353 3.882888 TCTCACCTTGTTTGGTTTGCTAG 59.117 43.478 0.00 0.00 38.45 3.42
353 354 2.955660 TCACCTTGTTTGGTTTGCTAGG 59.044 45.455 0.00 0.00 38.45 3.02
354 355 2.035832 CACCTTGTTTGGTTTGCTAGGG 59.964 50.000 0.00 0.00 38.45 3.53
355 356 2.091555 ACCTTGTTTGGTTTGCTAGGGA 60.092 45.455 0.00 0.00 36.89 4.20
356 357 2.296190 CCTTGTTTGGTTTGCTAGGGAC 59.704 50.000 0.00 0.00 0.00 4.46
357 358 3.222603 CTTGTTTGGTTTGCTAGGGACT 58.777 45.455 0.00 0.00 46.37 3.85
358 359 3.306472 TGTTTGGTTTGCTAGGGACTT 57.694 42.857 0.00 0.00 41.75 3.01
359 360 3.637769 TGTTTGGTTTGCTAGGGACTTT 58.362 40.909 0.00 0.00 41.75 2.66
360 361 4.027437 TGTTTGGTTTGCTAGGGACTTTT 58.973 39.130 0.00 0.00 41.75 2.27
361 362 4.468153 TGTTTGGTTTGCTAGGGACTTTTT 59.532 37.500 0.00 0.00 41.75 1.94
362 363 4.929819 TTGGTTTGCTAGGGACTTTTTC 57.070 40.909 0.00 0.00 41.75 2.29
363 364 4.178956 TGGTTTGCTAGGGACTTTTTCT 57.821 40.909 0.00 0.00 41.75 2.52
364 365 5.313280 TGGTTTGCTAGGGACTTTTTCTA 57.687 39.130 0.00 0.00 41.75 2.10
365 366 5.313712 TGGTTTGCTAGGGACTTTTTCTAG 58.686 41.667 0.00 0.00 41.75 2.43
366 367 5.163131 TGGTTTGCTAGGGACTTTTTCTAGT 60.163 40.000 0.00 0.00 41.75 2.57
367 368 5.411977 GGTTTGCTAGGGACTTTTTCTAGTC 59.588 44.000 0.00 0.00 43.05 2.59
377 378 6.445357 GACTTTTTCTAGTCCCAACACAAA 57.555 37.500 0.00 0.00 38.88 2.83
378 379 6.844097 ACTTTTTCTAGTCCCAACACAAAA 57.156 33.333 0.00 0.00 0.00 2.44
379 380 7.234661 ACTTTTTCTAGTCCCAACACAAAAA 57.765 32.000 0.00 0.00 0.00 1.94
398 399 5.524511 AAAAAGTCTTTGAAACCAAACGC 57.475 34.783 0.00 0.00 31.01 4.84
399 400 2.863401 AGTCTTTGAAACCAAACGCC 57.137 45.000 0.00 0.00 31.01 5.68
400 401 1.407618 AGTCTTTGAAACCAAACGCCC 59.592 47.619 0.00 0.00 31.01 6.13
401 402 0.747852 TCTTTGAAACCAAACGCCCC 59.252 50.000 0.00 0.00 31.01 5.80
402 403 0.249699 CTTTGAAACCAAACGCCCCC 60.250 55.000 0.00 0.00 31.01 5.40
451 455 2.595463 CCCCAGCACACCACACTG 60.595 66.667 0.00 0.00 0.00 3.66
478 482 3.010420 GTGGAAGTTGGATTGCCTAGTC 58.990 50.000 0.00 0.00 34.31 2.59
480 484 2.093658 GGAAGTTGGATTGCCTAGTCGA 60.094 50.000 0.00 0.00 34.31 4.20
504 535 2.658285 TGAGTTCGACGTCTAACTTGC 58.342 47.619 29.35 20.40 36.10 4.01
510 541 3.386486 TCGACGTCTAACTTGCATTTGT 58.614 40.909 14.70 0.00 0.00 2.83
512 543 4.271533 TCGACGTCTAACTTGCATTTGTTT 59.728 37.500 14.70 0.00 0.00 2.83
518 549 6.359617 CGTCTAACTTGCATTTGTTTACTTGG 59.640 38.462 5.75 0.00 0.00 3.61
542 573 7.234782 TGGACTTCTATTTGAAACTACTCCTCA 59.765 37.037 0.00 0.00 33.79 3.86
638 669 1.371758 TCTGAGTTCTGTGCGACGC 60.372 57.895 14.19 14.19 0.00 5.19
826 1486 0.957395 GCTAGCACACCACATGCACT 60.957 55.000 10.63 0.00 45.92 4.40
930 1603 6.618811 CATCCATCACAAGAAGGAAAAGAAG 58.381 40.000 0.00 0.00 44.15 2.85
934 1607 6.149142 CCATCACAAGAAGGAAAAGAAGAGAG 59.851 42.308 0.00 0.00 34.53 3.20
935 1608 5.059833 TCACAAGAAGGAAAAGAAGAGAGC 58.940 41.667 0.00 0.00 0.00 4.09
936 1609 4.818546 CACAAGAAGGAAAAGAAGAGAGCA 59.181 41.667 0.00 0.00 0.00 4.26
937 1610 5.049543 CACAAGAAGGAAAAGAAGAGAGCAG 60.050 44.000 0.00 0.00 0.00 4.24
938 1611 5.163258 ACAAGAAGGAAAAGAAGAGAGCAGA 60.163 40.000 0.00 0.00 0.00 4.26
939 1612 4.893608 AGAAGGAAAAGAAGAGAGCAGAC 58.106 43.478 0.00 0.00 0.00 3.51
980 1653 6.899771 CACGCTACACATATACACATTGTTTC 59.100 38.462 0.00 0.00 0.00 2.78
988 1661 8.982685 CACATATACACATTGTTTCCTAGCTAG 58.017 37.037 14.20 14.20 0.00 3.42
999 1672 7.820578 TGTTTCCTAGCTAGAACCTAGATAC 57.179 40.000 22.70 13.79 35.41 2.24
1022 1695 1.303091 GCGACAATGGCGGTTAAGGT 61.303 55.000 11.62 0.00 0.00 3.50
1023 1696 0.446222 CGACAATGGCGGTTAAGGTG 59.554 55.000 0.00 0.00 0.00 4.00
1187 1860 1.608717 CTGCCGGCTAACCAGAGAGT 61.609 60.000 29.70 0.00 34.57 3.24
1191 1864 1.178276 CGGCTAACCAGAGAGTCAGT 58.822 55.000 0.00 0.00 34.57 3.41
1294 1969 2.433239 GCTCCCCTCCTACGTTTGAATA 59.567 50.000 0.00 0.00 0.00 1.75
1298 1973 4.472108 TCCCCTCCTACGTTTGAATATGTT 59.528 41.667 0.00 0.00 0.00 2.71
1342 2022 2.031769 TCTCTTCAGCACATGCAAAACG 60.032 45.455 6.64 0.00 45.16 3.60
1355 2035 1.685302 CAAAACGAAAGCGGACCATG 58.315 50.000 0.00 0.00 43.17 3.66
1375 2055 5.302568 CCATGTTTTGGCACACTATATGGAT 59.697 40.000 8.25 0.00 40.55 3.41
1418 2311 7.124599 ACTTGAGGCAATTAATCAATGGAATCA 59.875 33.333 0.00 0.00 32.82 2.57
1566 2462 2.185350 CTGGAGCGCCATCGAGTT 59.815 61.111 10.50 0.00 44.91 3.01
1570 2466 3.701604 GAGCGCCATCGAGTTCCGT 62.702 63.158 2.29 0.00 39.75 4.69
1648 2544 3.929948 GATTTCCTGCTCCGCGCG 61.930 66.667 25.67 25.67 43.27 6.86
1681 2577 1.062352 ACCACCCTCTATACCCAGGTC 60.062 57.143 0.00 0.00 0.00 3.85
1712 2610 8.248945 TGGTTTTTCTACCAATTTAACGTTCAA 58.751 29.630 2.82 0.00 44.97 2.69
1735 2635 6.849588 AAGAAAAAGCACATCAATGAAACC 57.150 33.333 0.00 0.00 0.00 3.27
1842 2755 3.771160 ATGGACACGCCGAGGACC 61.771 66.667 0.00 0.00 40.66 4.46
1852 2765 1.898154 CCGAGGACCCTGTACAAGG 59.102 63.158 9.07 9.07 46.94 3.61
1938 2851 0.246635 TAGTGCTCAAGGAAGACGGC 59.753 55.000 0.00 0.00 0.00 5.68
2003 2916 2.156446 GCACGAAGCATGCATGTGC 61.156 57.895 31.78 31.78 44.79 4.57
2029 2943 8.428186 TGTTGTTTCTCGTTAGTTAAGTTGAT 57.572 30.769 0.00 0.00 0.00 2.57
2030 2944 8.332464 TGTTGTTTCTCGTTAGTTAAGTTGATG 58.668 33.333 0.00 0.00 0.00 3.07
2031 2945 8.545420 GTTGTTTCTCGTTAGTTAAGTTGATGA 58.455 33.333 0.00 0.00 0.00 2.92
2219 3416 1.404315 GGCAAGTACCTCGACTTCCTG 60.404 57.143 0.00 0.00 37.57 3.86
2315 3512 2.742116 AACACAGGTGGGTCGCACT 61.742 57.895 18.42 3.52 34.19 4.40
2316 3513 2.357517 CACAGGTGGGTCGCACTC 60.358 66.667 18.42 9.58 0.00 3.51
2317 3514 3.991051 ACAGGTGGGTCGCACTCG 61.991 66.667 18.42 12.38 0.00 4.18
2321 3518 4.961511 GTGGGTCGCACTCGCACA 62.962 66.667 12.54 0.00 44.38 4.57
2322 3519 4.228567 TGGGTCGCACTCGCACAA 62.229 61.111 0.00 0.00 38.40 3.33
2323 3520 3.712881 GGGTCGCACTCGCACAAC 61.713 66.667 0.00 0.00 38.40 3.32
2324 3521 4.059459 GGTCGCACTCGCACAACG 62.059 66.667 0.00 0.00 45.62 4.10
2336 3533 0.918619 GCACAACGATTCATGCATGC 59.081 50.000 22.25 11.82 38.00 4.06
2351 3548 0.949397 CATGCCTCCATGGATTCACG 59.051 55.000 16.63 4.96 44.07 4.35
2360 3557 1.811965 CATGGATTCACGCAAAGTCCA 59.188 47.619 0.00 0.00 42.62 4.02
2362 3559 2.513753 TGGATTCACGCAAAGTCCATT 58.486 42.857 0.00 0.00 34.23 3.16
2367 3564 1.001068 TCACGCAAAGTCCATTACCGA 59.999 47.619 0.00 0.00 0.00 4.69
2368 3565 2.006888 CACGCAAAGTCCATTACCGAT 58.993 47.619 0.00 0.00 0.00 4.18
2378 3575 4.281182 AGTCCATTACCGATGTACCATCTC 59.719 45.833 3.03 0.00 33.71 2.75
2380 3577 4.280929 TCCATTACCGATGTACCATCTCTG 59.719 45.833 3.03 0.00 33.71 3.35
2381 3578 4.280929 CCATTACCGATGTACCATCTCTGA 59.719 45.833 3.03 0.00 33.71 3.27
2420 3678 4.323569 TGAAAGGAAGGAGAGAGCTAGA 57.676 45.455 0.00 0.00 0.00 2.43
2421 3679 4.020543 TGAAAGGAAGGAGAGAGCTAGAC 58.979 47.826 0.00 0.00 0.00 2.59
2504 3762 1.916000 GATACGCACAACTCGTGGTAC 59.084 52.381 0.00 0.00 46.45 3.34
2505 3763 0.385849 TACGCACAACTCGTGGTACG 60.386 55.000 0.00 0.00 46.45 3.67
2512 3773 1.971962 CAACTCGTGGTACGTTACGTC 59.028 52.381 15.39 6.24 43.14 4.34
2529 3790 3.086600 CCCTCCCTGCCTCACTCC 61.087 72.222 0.00 0.00 0.00 3.85
2545 3806 3.574396 TCACTCCGAACTCTGAAGAACAT 59.426 43.478 0.00 0.00 0.00 2.71
2546 3807 3.923461 CACTCCGAACTCTGAAGAACATC 59.077 47.826 0.00 0.00 0.00 3.06
2547 3808 3.056465 ACTCCGAACTCTGAAGAACATCC 60.056 47.826 0.00 0.00 0.00 3.51
2548 3809 2.233922 TCCGAACTCTGAAGAACATCCC 59.766 50.000 0.00 0.00 0.00 3.85
2575 3836 3.971245 AACCTCTCATCTTCTCCACAC 57.029 47.619 0.00 0.00 0.00 3.82
2580 3843 0.526211 TCATCTTCTCCACACGACCG 59.474 55.000 0.00 0.00 0.00 4.79
2619 3882 0.601057 TCCTCTTCACACGCGATTCA 59.399 50.000 15.93 0.00 0.00 2.57
2668 3931 0.309302 CCTCGTGCTCTCCATCTACG 59.691 60.000 0.00 0.00 36.20 3.51
2680 3943 1.064296 ATCTACGCCAAGACGCTCG 59.936 57.895 0.00 0.00 36.19 5.03
2877 4242 0.184451 CCATCCCCTCCATCAAGGTG 59.816 60.000 0.00 0.00 39.02 4.00
2882 4247 0.393537 CCCTCCATCAAGGTGCTCAC 60.394 60.000 0.00 0.00 39.02 3.51
3054 4419 1.429148 CCTACATCAACGCCGCCTTC 61.429 60.000 0.00 0.00 0.00 3.46
3111 4476 3.777925 CCTGCGTCGCCGACTTTG 61.778 66.667 16.07 0.66 35.63 2.77
3152 4517 1.926510 CACAAAGATATGCGCACTCGA 59.073 47.619 14.90 0.00 38.10 4.04
3154 4519 3.735746 CACAAAGATATGCGCACTCGATA 59.264 43.478 14.90 0.00 38.10 2.92
3155 4520 3.736252 ACAAAGATATGCGCACTCGATAC 59.264 43.478 14.90 0.00 38.10 2.24
3156 4521 3.643159 AAGATATGCGCACTCGATACA 57.357 42.857 14.90 0.00 38.10 2.29
3188 4607 8.567285 ACTACTATGCTCTGTTGCTAAATTTT 57.433 30.769 0.00 0.00 0.00 1.82
3204 4623 7.799447 TGCTAAATTTTCACGTGTGTAATGTAC 59.201 33.333 16.51 8.37 0.00 2.90
3209 4628 5.644902 TTCACGTGTGTAATGTACTTGTG 57.355 39.130 16.51 0.00 0.00 3.33
3258 4677 0.638746 CTTGTTCGTGATCGCCGTAC 59.361 55.000 0.00 4.25 36.96 3.67
3315 4737 8.589335 AATACAGTACCAAGTTTATATCAGCG 57.411 34.615 0.00 0.00 0.00 5.18
3345 6093 0.593128 CTCCCCAAGTTTGCAACTCG 59.407 55.000 0.00 0.00 41.91 4.18
3357 6105 1.545706 GCAACTCGGTTCCTCTCCCT 61.546 60.000 0.00 0.00 0.00 4.20
3360 6108 1.849977 ACTCGGTTCCTCTCCCTAAC 58.150 55.000 0.00 0.00 0.00 2.34
3366 6114 5.136105 TCGGTTCCTCTCCCTAACTATAAC 58.864 45.833 0.00 0.00 0.00 1.89
3388 6136 3.438078 CCAGACTTAGGCCCTCCACTATA 60.438 52.174 0.00 0.00 33.74 1.31
3389 6137 4.421131 CAGACTTAGGCCCTCCACTATAT 58.579 47.826 0.00 0.00 33.74 0.86
3390 6138 5.518546 CCAGACTTAGGCCCTCCACTATATA 60.519 48.000 0.00 0.00 33.74 0.86
3391 6139 5.419471 CAGACTTAGGCCCTCCACTATATAC 59.581 48.000 0.00 0.00 33.74 1.47
3392 6140 5.316453 AGACTTAGGCCCTCCACTATATACT 59.684 44.000 0.00 0.00 33.74 2.12
3393 6141 5.581975 ACTTAGGCCCTCCACTATATACTC 58.418 45.833 0.00 0.00 33.74 2.59
3394 6142 3.476485 AGGCCCTCCACTATATACTCC 57.524 52.381 0.00 0.00 33.74 3.85
3395 6143 2.044630 AGGCCCTCCACTATATACTCCC 59.955 54.545 0.00 0.00 33.74 4.30
3396 6144 2.044630 GGCCCTCCACTATATACTCCCT 59.955 54.545 0.00 0.00 0.00 4.20
3397 6145 3.504343 GGCCCTCCACTATATACTCCCTT 60.504 52.174 0.00 0.00 0.00 3.95
3398 6146 3.770388 GCCCTCCACTATATACTCCCTTC 59.230 52.174 0.00 0.00 0.00 3.46
3399 6147 4.017808 CCCTCCACTATATACTCCCTTCG 58.982 52.174 0.00 0.00 0.00 3.79
3400 6148 4.017808 CCTCCACTATATACTCCCTTCGG 58.982 52.174 0.00 0.00 0.00 4.30
3401 6149 4.508763 CCTCCACTATATACTCCCTTCGGT 60.509 50.000 0.00 0.00 0.00 4.69
3402 6150 5.070823 TCCACTATATACTCCCTTCGGTT 57.929 43.478 0.00 0.00 0.00 4.44
3403 6151 5.075493 TCCACTATATACTCCCTTCGGTTC 58.925 45.833 0.00 0.00 0.00 3.62
3404 6152 5.078256 CCACTATATACTCCCTTCGGTTCT 58.922 45.833 0.00 0.00 0.00 3.01
3405 6153 5.539193 CCACTATATACTCCCTTCGGTTCTT 59.461 44.000 0.00 0.00 0.00 2.52
3406 6154 6.041751 CCACTATATACTCCCTTCGGTTCTTT 59.958 42.308 0.00 0.00 0.00 2.52
3407 6155 7.418712 CCACTATATACTCCCTTCGGTTCTTTT 60.419 40.741 0.00 0.00 0.00 2.27
3408 6156 7.985752 CACTATATACTCCCTTCGGTTCTTTTT 59.014 37.037 0.00 0.00 0.00 1.94
3409 6157 9.205513 ACTATATACTCCCTTCGGTTCTTTTTA 57.794 33.333 0.00 0.00 0.00 1.52
3410 6158 9.473640 CTATATACTCCCTTCGGTTCTTTTTAC 57.526 37.037 0.00 0.00 0.00 2.01
3411 6159 4.701651 ACTCCCTTCGGTTCTTTTTACT 57.298 40.909 0.00 0.00 0.00 2.24
3412 6160 4.639334 ACTCCCTTCGGTTCTTTTTACTC 58.361 43.478 0.00 0.00 0.00 2.59
3413 6161 4.347292 ACTCCCTTCGGTTCTTTTTACTCT 59.653 41.667 0.00 0.00 0.00 3.24
3414 6162 4.638304 TCCCTTCGGTTCTTTTTACTCTG 58.362 43.478 0.00 0.00 0.00 3.35
3415 6163 3.188667 CCCTTCGGTTCTTTTTACTCTGC 59.811 47.826 0.00 0.00 0.00 4.26
3416 6164 3.813166 CCTTCGGTTCTTTTTACTCTGCA 59.187 43.478 0.00 0.00 0.00 4.41
3417 6165 4.455877 CCTTCGGTTCTTTTTACTCTGCAT 59.544 41.667 0.00 0.00 0.00 3.96
3418 6166 5.642063 CCTTCGGTTCTTTTTACTCTGCATA 59.358 40.000 0.00 0.00 0.00 3.14
3419 6167 6.316390 CCTTCGGTTCTTTTTACTCTGCATAT 59.684 38.462 0.00 0.00 0.00 1.78
3420 6168 7.148239 CCTTCGGTTCTTTTTACTCTGCATATT 60.148 37.037 0.00 0.00 0.00 1.28
3421 6169 8.780846 TTCGGTTCTTTTTACTCTGCATATTA 57.219 30.769 0.00 0.00 0.00 0.98
3422 6170 8.420374 TCGGTTCTTTTTACTCTGCATATTAG 57.580 34.615 0.00 0.00 0.00 1.73
3423 6171 7.494625 TCGGTTCTTTTTACTCTGCATATTAGG 59.505 37.037 0.00 0.00 0.00 2.69
3424 6172 7.280205 CGGTTCTTTTTACTCTGCATATTAGGT 59.720 37.037 0.00 0.00 0.00 3.08
3425 6173 8.957466 GGTTCTTTTTACTCTGCATATTAGGTT 58.043 33.333 0.00 0.00 0.00 3.50
3428 6176 9.733556 TCTTTTTACTCTGCATATTAGGTTTGA 57.266 29.630 0.00 0.00 0.00 2.69
3429 6177 9.774742 CTTTTTACTCTGCATATTAGGTTTGAC 57.225 33.333 0.00 0.00 0.00 3.18
3430 6178 7.859325 TTTACTCTGCATATTAGGTTTGACC 57.141 36.000 0.00 0.00 38.99 4.02
3431 6179 4.442706 ACTCTGCATATTAGGTTTGACCG 58.557 43.478 0.00 0.00 44.90 4.79
3432 6180 4.161565 ACTCTGCATATTAGGTTTGACCGA 59.838 41.667 0.00 0.00 44.90 4.69
3433 6181 5.092554 TCTGCATATTAGGTTTGACCGAA 57.907 39.130 0.00 0.00 44.90 4.30
3434 6182 5.116180 TCTGCATATTAGGTTTGACCGAAG 58.884 41.667 0.00 0.00 44.90 3.79
3435 6183 4.839121 TGCATATTAGGTTTGACCGAAGT 58.161 39.130 0.00 0.00 44.90 3.01
3436 6184 4.873827 TGCATATTAGGTTTGACCGAAGTC 59.126 41.667 0.00 0.00 44.90 3.01
3449 6197 4.723248 GACCGAAGTCAATTTCATCCAAC 58.277 43.478 0.00 0.00 42.99 3.77
3450 6198 4.398319 ACCGAAGTCAATTTCATCCAACT 58.602 39.130 0.00 0.00 0.00 3.16
3451 6199 4.827284 ACCGAAGTCAATTTCATCCAACTT 59.173 37.500 0.00 0.00 0.00 2.66
3452 6200 5.301805 ACCGAAGTCAATTTCATCCAACTTT 59.698 36.000 0.00 0.00 0.00 2.66
3453 6201 5.630680 CCGAAGTCAATTTCATCCAACTTTG 59.369 40.000 0.00 0.00 0.00 2.77
3454 6202 6.437928 CGAAGTCAATTTCATCCAACTTTGA 58.562 36.000 0.00 0.00 32.33 2.69
3455 6203 6.360681 CGAAGTCAATTTCATCCAACTTTGAC 59.639 38.462 5.67 5.67 41.88 3.18
3456 6204 6.089249 AGTCAATTTCATCCAACTTTGACC 57.911 37.500 9.31 0.00 42.29 4.02
3457 6205 5.598005 AGTCAATTTCATCCAACTTTGACCA 59.402 36.000 9.31 0.00 42.29 4.02
3458 6206 6.098124 AGTCAATTTCATCCAACTTTGACCAA 59.902 34.615 9.31 0.00 42.29 3.67
3459 6207 6.421801 GTCAATTTCATCCAACTTTGACCAAG 59.578 38.462 0.00 0.00 37.86 3.61
3503 6251 9.638239 AAACATTCACATAACAACACCAATATC 57.362 29.630 0.00 0.00 0.00 1.63
3504 6252 8.347004 ACATTCACATAACAACACCAATATCA 57.653 30.769 0.00 0.00 0.00 2.15
3505 6253 8.970020 ACATTCACATAACAACACCAATATCAT 58.030 29.630 0.00 0.00 0.00 2.45
3506 6254 9.806203 CATTCACATAACAACACCAATATCATT 57.194 29.630 0.00 0.00 0.00 2.57
3509 6257 9.898152 TCACATAACAACACCAATATCATTAGA 57.102 29.630 0.00 0.00 0.00 2.10
3510 6258 9.935682 CACATAACAACACCAATATCATTAGAC 57.064 33.333 0.00 0.00 0.00 2.59
3511 6259 9.905713 ACATAACAACACCAATATCATTAGACT 57.094 29.630 0.00 0.00 0.00 3.24
3515 6263 8.668510 ACAACACCAATATCATTAGACTCATC 57.331 34.615 0.00 0.00 0.00 2.92
3516 6264 8.489489 ACAACACCAATATCATTAGACTCATCT 58.511 33.333 0.00 0.00 39.15 2.90
3517 6265 9.334947 CAACACCAATATCATTAGACTCATCTT 57.665 33.333 0.00 0.00 36.29 2.40
3518 6266 8.899427 ACACCAATATCATTAGACTCATCTTG 57.101 34.615 0.00 0.00 36.29 3.02
3519 6267 7.935755 ACACCAATATCATTAGACTCATCTTGG 59.064 37.037 0.00 0.00 36.29 3.61
3520 6268 8.152898 CACCAATATCATTAGACTCATCTTGGA 58.847 37.037 0.00 0.00 36.29 3.53
3521 6269 8.717717 ACCAATATCATTAGACTCATCTTGGAA 58.282 33.333 0.00 0.00 36.29 3.53
3522 6270 9.736414 CCAATATCATTAGACTCATCTTGGAAT 57.264 33.333 0.00 0.00 36.29 3.01
3599 6347 6.603237 AAATTTGGTCAAACTTAGCAAAGC 57.397 33.333 6.60 0.00 44.67 3.51
3600 6348 5.535753 ATTTGGTCAAACTTAGCAAAGCT 57.464 34.783 6.60 0.00 44.67 3.74
3601 6349 5.337578 TTTGGTCAAACTTAGCAAAGCTT 57.662 34.783 0.00 0.00 38.88 3.74
3602 6350 4.305989 TGGTCAAACTTAGCAAAGCTTG 57.694 40.909 0.00 0.00 40.44 4.01
3603 6351 3.951037 TGGTCAAACTTAGCAAAGCTTGA 59.049 39.130 0.00 1.00 42.62 3.02
3606 6354 5.835113 TCAAACTTAGCAAAGCTTGACTT 57.165 34.783 0.00 0.00 40.93 3.01
3608 6356 6.265577 TCAAACTTAGCAAAGCTTGACTTTC 58.734 36.000 0.00 0.00 45.78 2.62
3609 6357 4.474226 ACTTAGCAAAGCTTGACTTTCG 57.526 40.909 0.00 0.00 45.78 3.46
3610 6358 3.251004 ACTTAGCAAAGCTTGACTTTCGG 59.749 43.478 0.00 0.00 45.78 4.30
3611 6359 0.312102 AGCAAAGCTTGACTTTCGGC 59.688 50.000 0.00 0.00 45.78 5.54
3612 6360 0.030638 GCAAAGCTTGACTTTCGGCA 59.969 50.000 0.00 0.00 45.78 5.69
3613 6361 1.535860 GCAAAGCTTGACTTTCGGCAA 60.536 47.619 0.00 0.00 45.78 4.52
3614 6362 2.808244 CAAAGCTTGACTTTCGGCAAA 58.192 42.857 0.00 0.00 45.78 3.68
3615 6363 3.383761 CAAAGCTTGACTTTCGGCAAAT 58.616 40.909 0.00 0.00 45.78 2.32
3616 6364 2.997485 AGCTTGACTTTCGGCAAATC 57.003 45.000 0.00 0.00 0.00 2.17
3617 6365 1.541588 AGCTTGACTTTCGGCAAATCC 59.458 47.619 0.00 0.00 0.00 3.01
3618 6366 1.269448 GCTTGACTTTCGGCAAATCCA 59.731 47.619 0.00 0.00 34.01 3.41
3619 6367 2.288152 GCTTGACTTTCGGCAAATCCAA 60.288 45.455 0.00 0.00 34.01 3.53
3620 6368 3.614870 GCTTGACTTTCGGCAAATCCAAT 60.615 43.478 0.00 0.00 34.01 3.16
3621 6369 3.574284 TGACTTTCGGCAAATCCAATG 57.426 42.857 0.00 0.00 34.01 2.82
3622 6370 2.890311 TGACTTTCGGCAAATCCAATGT 59.110 40.909 0.00 0.00 34.01 2.71
3623 6371 3.244976 GACTTTCGGCAAATCCAATGTG 58.755 45.455 0.00 0.00 34.01 3.21
3624 6372 1.994779 CTTTCGGCAAATCCAATGTGC 59.005 47.619 0.00 0.00 37.55 4.57
3625 6373 0.964700 TTCGGCAAATCCAATGTGCA 59.035 45.000 4.59 0.00 40.12 4.57
3626 6374 0.527113 TCGGCAAATCCAATGTGCAG 59.473 50.000 4.59 0.65 40.12 4.41
3627 6375 0.527113 CGGCAAATCCAATGTGCAGA 59.473 50.000 4.59 0.00 40.12 4.26
3628 6376 1.468565 CGGCAAATCCAATGTGCAGAG 60.469 52.381 4.59 0.00 40.12 3.35
3629 6377 1.547372 GGCAAATCCAATGTGCAGAGT 59.453 47.619 4.59 0.00 40.12 3.24
3630 6378 2.754552 GGCAAATCCAATGTGCAGAGTA 59.245 45.455 4.59 0.00 40.12 2.59
3631 6379 3.193267 GGCAAATCCAATGTGCAGAGTAA 59.807 43.478 4.59 0.00 40.12 2.24
3632 6380 4.321899 GGCAAATCCAATGTGCAGAGTAAA 60.322 41.667 4.59 0.00 40.12 2.01
3633 6381 5.229423 GCAAATCCAATGTGCAGAGTAAAA 58.771 37.500 0.00 0.00 38.19 1.52
3634 6382 5.695816 GCAAATCCAATGTGCAGAGTAAAAA 59.304 36.000 0.00 0.00 38.19 1.94
3635 6383 6.128742 GCAAATCCAATGTGCAGAGTAAAAAG 60.129 38.462 0.00 0.00 38.19 2.27
3636 6384 5.649782 ATCCAATGTGCAGAGTAAAAAGG 57.350 39.130 0.00 0.00 0.00 3.11
3637 6385 4.724399 TCCAATGTGCAGAGTAAAAAGGA 58.276 39.130 0.00 0.00 0.00 3.36
3638 6386 4.518970 TCCAATGTGCAGAGTAAAAAGGAC 59.481 41.667 0.00 0.00 0.00 3.85
3639 6387 4.321230 CCAATGTGCAGAGTAAAAAGGACC 60.321 45.833 0.00 0.00 0.00 4.46
3640 6388 2.489971 TGTGCAGAGTAAAAAGGACCG 58.510 47.619 0.00 0.00 0.00 4.79
3641 6389 1.804748 GTGCAGAGTAAAAAGGACCGG 59.195 52.381 0.00 0.00 0.00 5.28
3642 6390 1.695242 TGCAGAGTAAAAAGGACCGGA 59.305 47.619 9.46 0.00 0.00 5.14
3643 6391 2.289444 TGCAGAGTAAAAAGGACCGGAG 60.289 50.000 9.46 0.00 0.00 4.63
3658 6406 2.381725 CGGAGGGAGTAGACCAAAAC 57.618 55.000 0.00 0.00 0.00 2.43
3664 6412 3.397955 AGGGAGTAGACCAAAACCAATGT 59.602 43.478 0.00 0.00 0.00 2.71
3691 6440 4.640771 TCATTTCTAGTCTTTGGGCACT 57.359 40.909 0.00 0.00 0.00 4.40
3705 6454 3.248043 GCACTGATGCCCTACACAA 57.752 52.632 0.00 0.00 46.97 3.33
3707 6456 1.078709 CACTGATGCCCTACACAACG 58.921 55.000 0.00 0.00 0.00 4.10
3724 6474 1.371635 CGCAACCGGAGCCAAAAAG 60.372 57.895 9.46 0.00 0.00 2.27
3734 6484 3.614870 CGGAGCCAAAAAGAATTTCTGGG 60.615 47.826 0.00 1.60 37.28 4.45
3735 6485 3.329386 GAGCCAAAAAGAATTTCTGGGC 58.671 45.455 17.30 17.30 44.03 5.36
3762 6667 2.671070 GAAGGGCACTGGCAGCTA 59.329 61.111 15.89 0.00 43.71 3.32
3770 6675 1.410517 GCACTGGCAGCTAGATCAGTA 59.589 52.381 15.89 0.00 38.27 2.74
3780 6685 5.290643 GCAGCTAGATCAGTAGACTTGTTTG 59.709 44.000 0.00 0.00 0.00 2.93
3796 6701 8.504005 AGACTTGTTTGTCAATTCCTTTATACG 58.496 33.333 0.00 0.00 39.27 3.06
3813 6727 2.046507 GGAGTGGCTGTGGAGCTG 60.047 66.667 0.00 0.00 45.44 4.24
3817 6731 3.170672 TGGCTGTGGAGCTGGTGT 61.171 61.111 0.00 0.00 45.44 4.16
3909 9090 2.757508 CTCCTCGGAGCCTGCAGA 60.758 66.667 17.39 0.00 35.31 4.26
3918 9115 1.908340 GAGCCTGCAGACCATCCACT 61.908 60.000 17.39 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.959357 GCACTCGTTGACTGCAGGC 61.959 63.158 19.93 17.40 0.00 4.85
28 29 1.448985 AAATATGTGGCGCACTCGTT 58.551 45.000 10.83 0.00 38.14 3.85
72 73 4.139038 GTTGGCCAAATATACCCGTATGT 58.861 43.478 22.47 0.00 0.00 2.29
75 76 2.485124 CGGTTGGCCAAATATACCCGTA 60.485 50.000 26.54 0.00 34.09 4.02
77 78 0.948678 CGGTTGGCCAAATATACCCG 59.051 55.000 22.47 23.07 34.09 5.28
105 106 9.199982 CAAATGTCTGTGAGATGCTAAATTTTT 57.800 29.630 0.00 0.00 0.00 1.94
119 120 7.148323 CGGGTTGATAAATACAAATGTCTGTGA 60.148 37.037 0.00 0.00 0.00 3.58
124 125 4.967575 CGCGGGTTGATAAATACAAATGTC 59.032 41.667 0.00 0.00 0.00 3.06
148 149 5.694816 CATGTGGCGTTAAACTTTACATCA 58.305 37.500 0.00 0.00 0.00 3.07
164 165 7.042119 GGGTTAATAAATACAAATGCATGTGGC 60.042 37.037 20.95 0.00 45.13 5.01
167 168 7.704472 CACGGGTTAATAAATACAAATGCATGT 59.296 33.333 0.00 0.00 37.32 3.21
170 171 7.030165 CACACGGGTTAATAAATACAAATGCA 58.970 34.615 0.00 0.00 0.00 3.96
179 180 5.906113 TTGCATCACACGGGTTAATAAAT 57.094 34.783 0.00 0.00 0.00 1.40
215 216 4.021102 AGAGAACCAAACACCACCTATG 57.979 45.455 0.00 0.00 0.00 2.23
216 217 4.844655 ACTAGAGAACCAAACACCACCTAT 59.155 41.667 0.00 0.00 0.00 2.57
217 218 4.228824 ACTAGAGAACCAAACACCACCTA 58.771 43.478 0.00 0.00 0.00 3.08
218 219 3.046374 ACTAGAGAACCAAACACCACCT 58.954 45.455 0.00 0.00 0.00 4.00
219 220 3.400255 GACTAGAGAACCAAACACCACC 58.600 50.000 0.00 0.00 0.00 4.61
220 221 3.071167 AGGACTAGAGAACCAAACACCAC 59.929 47.826 0.00 0.00 0.00 4.16
221 222 3.314693 AGGACTAGAGAACCAAACACCA 58.685 45.455 0.00 0.00 0.00 4.17
222 223 4.081586 CCTAGGACTAGAGAACCAAACACC 60.082 50.000 1.05 0.00 35.21 4.16
223 224 4.771054 TCCTAGGACTAGAGAACCAAACAC 59.229 45.833 7.62 0.00 35.21 3.32
224 225 4.771054 GTCCTAGGACTAGAGAACCAAACA 59.229 45.833 31.12 0.00 41.57 2.83
225 226 5.327616 GTCCTAGGACTAGAGAACCAAAC 57.672 47.826 31.12 3.26 41.57 2.93
238 239 5.409211 CGGAACTAGAAAAAGTCCTAGGAC 58.591 45.833 31.29 31.29 44.86 3.85
239 240 4.081807 GCGGAACTAGAAAAAGTCCTAGGA 60.082 45.833 7.62 7.62 37.32 2.94
240 241 4.081586 AGCGGAACTAGAAAAAGTCCTAGG 60.082 45.833 0.82 0.82 37.32 3.02
241 242 5.074584 AGCGGAACTAGAAAAAGTCCTAG 57.925 43.478 0.00 0.00 38.57 3.02
254 255 7.496591 TCTTTTTCAAAAAGTCTAGCGGAACTA 59.503 33.333 19.82 0.00 0.00 2.24
255 256 6.317893 TCTTTTTCAAAAAGTCTAGCGGAACT 59.682 34.615 19.82 0.00 0.00 3.01
256 257 6.414109 GTCTTTTTCAAAAAGTCTAGCGGAAC 59.586 38.462 19.82 6.14 0.00 3.62
257 258 6.317893 AGTCTTTTTCAAAAAGTCTAGCGGAA 59.682 34.615 19.82 0.00 0.00 4.30
258 259 5.820947 AGTCTTTTTCAAAAAGTCTAGCGGA 59.179 36.000 19.82 0.00 0.00 5.54
259 260 6.017852 AGAGTCTTTTTCAAAAAGTCTAGCGG 60.018 38.462 18.61 0.00 0.00 5.52
260 261 6.949449 AGAGTCTTTTTCAAAAAGTCTAGCG 58.051 36.000 18.61 0.00 0.00 4.26
261 262 7.920738 TGAGAGTCTTTTTCAAAAAGTCTAGC 58.079 34.615 18.61 14.49 0.00 3.42
262 263 9.928236 CTTGAGAGTCTTTTTCAAAAAGTCTAG 57.072 33.333 18.61 12.57 31.11 2.43
263 264 9.667107 TCTTGAGAGTCTTTTTCAAAAAGTCTA 57.333 29.630 18.61 8.09 31.11 2.59
264 265 8.567285 TCTTGAGAGTCTTTTTCAAAAAGTCT 57.433 30.769 18.64 18.64 31.11 3.24
265 266 9.283420 CTTCTTGAGAGTCTTTTTCAAAAAGTC 57.717 33.333 19.82 15.25 28.93 3.01
266 267 8.246871 CCTTCTTGAGAGTCTTTTTCAAAAAGT 58.753 33.333 19.82 4.20 30.60 2.66
267 268 8.246871 ACCTTCTTGAGAGTCTTTTTCAAAAAG 58.753 33.333 15.46 15.46 31.76 2.27
268 269 8.028938 CACCTTCTTGAGAGTCTTTTTCAAAAA 58.971 33.333 0.00 0.00 31.11 1.94
269 270 7.538575 CACCTTCTTGAGAGTCTTTTTCAAAA 58.461 34.615 0.00 0.00 31.11 2.44
270 271 6.404734 GCACCTTCTTGAGAGTCTTTTTCAAA 60.405 38.462 0.00 0.00 31.11 2.69
271 272 5.066505 GCACCTTCTTGAGAGTCTTTTTCAA 59.933 40.000 0.00 0.00 0.00 2.69
272 273 4.576463 GCACCTTCTTGAGAGTCTTTTTCA 59.424 41.667 0.00 0.00 0.00 2.69
273 274 4.819088 AGCACCTTCTTGAGAGTCTTTTTC 59.181 41.667 0.00 0.00 0.00 2.29
274 275 4.786425 AGCACCTTCTTGAGAGTCTTTTT 58.214 39.130 0.00 0.00 0.00 1.94
275 276 4.429854 AGCACCTTCTTGAGAGTCTTTT 57.570 40.909 0.00 0.00 0.00 2.27
276 277 4.384940 GAAGCACCTTCTTGAGAGTCTTT 58.615 43.478 0.00 0.00 37.49 2.52
277 278 4.001618 GAAGCACCTTCTTGAGAGTCTT 57.998 45.455 0.00 0.00 37.49 3.01
278 279 3.676291 GAAGCACCTTCTTGAGAGTCT 57.324 47.619 0.00 0.00 37.49 3.24
288 289 5.122554 GCTAAAAGTCCTTAGAAGCACCTTC 59.877 44.000 0.00 0.00 40.45 3.46
289 290 5.004448 GCTAAAAGTCCTTAGAAGCACCTT 58.996 41.667 0.00 0.00 31.59 3.50
290 291 4.041691 TGCTAAAAGTCCTTAGAAGCACCT 59.958 41.667 6.73 0.00 31.59 4.00
291 292 4.324267 TGCTAAAAGTCCTTAGAAGCACC 58.676 43.478 6.73 0.00 31.59 5.01
292 293 5.941948 TTGCTAAAAGTCCTTAGAAGCAC 57.058 39.130 9.21 0.00 31.59 4.40
293 294 6.952773 TTTTGCTAAAAGTCCTTAGAAGCA 57.047 33.333 6.73 6.73 31.59 3.91
294 295 7.859613 CTTTTTGCTAAAAGTCCTTAGAAGC 57.140 36.000 20.79 0.00 43.34 3.86
325 326 5.353956 GCAAACCAAACAAGGTGAGATTTTT 59.646 36.000 0.00 0.00 42.25 1.94
326 327 4.875536 GCAAACCAAACAAGGTGAGATTTT 59.124 37.500 0.00 0.00 42.25 1.82
327 328 4.162131 AGCAAACCAAACAAGGTGAGATTT 59.838 37.500 0.00 0.00 42.25 2.17
328 329 3.706086 AGCAAACCAAACAAGGTGAGATT 59.294 39.130 0.00 0.00 42.25 2.40
329 330 3.299503 AGCAAACCAAACAAGGTGAGAT 58.700 40.909 0.00 0.00 42.25 2.75
330 331 2.733956 AGCAAACCAAACAAGGTGAGA 58.266 42.857 0.00 0.00 42.25 3.27
331 332 3.004734 CCTAGCAAACCAAACAAGGTGAG 59.995 47.826 0.00 0.00 42.25 3.51
332 333 2.955660 CCTAGCAAACCAAACAAGGTGA 59.044 45.455 0.00 0.00 42.25 4.02
333 334 2.035832 CCCTAGCAAACCAAACAAGGTG 59.964 50.000 0.00 0.00 42.25 4.00
334 335 2.091555 TCCCTAGCAAACCAAACAAGGT 60.092 45.455 0.00 0.00 45.91 3.50
335 336 2.296190 GTCCCTAGCAAACCAAACAAGG 59.704 50.000 0.00 0.00 0.00 3.61
336 337 3.222603 AGTCCCTAGCAAACCAAACAAG 58.777 45.455 0.00 0.00 0.00 3.16
337 338 3.306472 AGTCCCTAGCAAACCAAACAA 57.694 42.857 0.00 0.00 0.00 2.83
338 339 3.306472 AAGTCCCTAGCAAACCAAACA 57.694 42.857 0.00 0.00 0.00 2.83
339 340 4.665833 AAAAGTCCCTAGCAAACCAAAC 57.334 40.909 0.00 0.00 0.00 2.93
340 341 4.959839 AGAAAAAGTCCCTAGCAAACCAAA 59.040 37.500 0.00 0.00 0.00 3.28
341 342 4.542697 AGAAAAAGTCCCTAGCAAACCAA 58.457 39.130 0.00 0.00 0.00 3.67
342 343 4.178956 AGAAAAAGTCCCTAGCAAACCA 57.821 40.909 0.00 0.00 0.00 3.67
343 344 5.314529 ACTAGAAAAAGTCCCTAGCAAACC 58.685 41.667 0.00 0.00 34.70 3.27
344 345 6.483385 GACTAGAAAAAGTCCCTAGCAAAC 57.517 41.667 0.00 0.00 40.06 2.93
354 355 6.445357 TTTGTGTTGGGACTAGAAAAAGTC 57.555 37.500 0.00 0.00 44.31 3.01
355 356 6.844097 TTTTGTGTTGGGACTAGAAAAAGT 57.156 33.333 0.00 0.00 0.00 2.66
376 377 4.390603 GGCGTTTGGTTTCAAAGACTTTTT 59.609 37.500 0.00 0.00 42.78 1.94
377 378 3.930229 GGCGTTTGGTTTCAAAGACTTTT 59.070 39.130 0.00 0.00 42.78 2.27
378 379 3.517602 GGCGTTTGGTTTCAAAGACTTT 58.482 40.909 0.00 0.00 42.78 2.66
379 380 2.159156 GGGCGTTTGGTTTCAAAGACTT 60.159 45.455 0.00 0.00 42.78 3.01
380 381 1.407618 GGGCGTTTGGTTTCAAAGACT 59.592 47.619 0.00 0.00 42.78 3.24
381 382 1.537348 GGGGCGTTTGGTTTCAAAGAC 60.537 52.381 0.00 0.00 42.78 3.01
382 383 0.747852 GGGGCGTTTGGTTTCAAAGA 59.252 50.000 0.00 0.00 42.78 2.52
383 384 0.249699 GGGGGCGTTTGGTTTCAAAG 60.250 55.000 0.00 0.00 42.78 2.77
384 385 1.823976 GGGGGCGTTTGGTTTCAAA 59.176 52.632 0.00 0.00 40.23 2.69
385 386 3.539842 GGGGGCGTTTGGTTTCAA 58.460 55.556 0.00 0.00 0.00 2.69
399 400 3.558418 CACGACGAAAATAACTATGGGGG 59.442 47.826 0.00 0.00 0.00 5.40
400 401 4.033587 CACACGACGAAAATAACTATGGGG 59.966 45.833 0.00 0.00 0.00 4.96
401 402 4.628333 ACACACGACGAAAATAACTATGGG 59.372 41.667 0.00 0.00 0.00 4.00
402 403 5.773239 ACACACGACGAAAATAACTATGG 57.227 39.130 0.00 0.00 0.00 2.74
419 420 1.040339 TGGGGTGCCTCAAAACACAC 61.040 55.000 0.00 0.00 39.55 3.82
478 482 4.615961 AGTTAGACGTCGAACTCAAAATCG 59.384 41.667 30.75 0.00 37.24 3.34
480 484 5.333111 GCAAGTTAGACGTCGAACTCAAAAT 60.333 40.000 34.29 20.97 40.16 1.82
493 497 6.359617 CCAAGTAAACAAATGCAAGTTAGACG 59.640 38.462 0.00 0.00 0.00 4.18
494 498 7.378728 GTCCAAGTAAACAAATGCAAGTTAGAC 59.621 37.037 0.00 0.00 0.00 2.59
512 543 9.924650 GAGTAGTTTCAAATAGAAGTCCAAGTA 57.075 33.333 0.00 0.00 37.57 2.24
518 549 9.308318 GATGAGGAGTAGTTTCAAATAGAAGTC 57.692 37.037 0.00 0.00 37.57 3.01
542 573 4.207165 CACCAAATAATTCCACCTCGGAT 58.793 43.478 0.00 0.00 45.80 4.18
556 587 7.271511 AGCATTTCTTTGAACAACACCAAATA 58.728 30.769 0.00 0.00 32.60 1.40
614 645 2.096013 TCGCACAGAACTCAGACTATCG 59.904 50.000 0.00 0.00 0.00 2.92
615 646 3.430931 GTCGCACAGAACTCAGACTATC 58.569 50.000 0.00 0.00 0.00 2.08
616 647 2.159503 CGTCGCACAGAACTCAGACTAT 60.160 50.000 0.00 0.00 0.00 2.12
617 648 1.197036 CGTCGCACAGAACTCAGACTA 59.803 52.381 0.00 0.00 0.00 2.59
620 651 1.371758 GCGTCGCACAGAACTCAGA 60.372 57.895 13.44 0.00 0.00 3.27
670 714 1.159285 TTTCTGCATCGCACAAGGAG 58.841 50.000 0.00 0.00 33.79 3.69
671 715 1.739466 GATTTCTGCATCGCACAAGGA 59.261 47.619 0.00 0.00 33.79 3.36
674 718 2.905959 CAGATTTCTGCATCGCACAA 57.094 45.000 0.00 0.00 37.15 3.33
725 769 2.561858 GACCTCCTAATAGTAAGGCCCG 59.438 54.545 0.00 0.00 33.84 6.13
826 1486 0.396556 ATCCATGGAGCTGCATGCAA 60.397 50.000 35.28 26.66 45.94 4.08
964 1637 9.764363 TTCTAGCTAGGAAACAATGTGTATATG 57.236 33.333 20.58 0.00 0.00 1.78
966 1639 8.202137 GGTTCTAGCTAGGAAACAATGTGTATA 58.798 37.037 20.58 0.00 31.40 1.47
968 1641 6.212791 AGGTTCTAGCTAGGAAACAATGTGTA 59.787 38.462 20.58 0.00 33.28 2.90
980 1653 5.126384 GCCATGTATCTAGGTTCTAGCTAGG 59.874 48.000 20.58 3.59 44.22 3.02
988 1661 3.728076 TGTCGCCATGTATCTAGGTTC 57.272 47.619 0.00 0.00 0.00 3.62
999 1672 1.372838 TAACCGCCATTGTCGCCATG 61.373 55.000 0.00 0.00 0.00 3.66
1022 1695 0.899253 CATCATTGCCACCACCCACA 60.899 55.000 0.00 0.00 0.00 4.17
1023 1696 1.892338 CATCATTGCCACCACCCAC 59.108 57.895 0.00 0.00 0.00 4.61
1278 1951 6.737254 ACAAACATATTCAAACGTAGGAGG 57.263 37.500 0.00 0.00 0.00 4.30
1342 2022 2.064573 CCAAAACATGGTCCGCTTTC 57.935 50.000 0.00 0.00 44.85 2.62
1355 2035 4.887071 TGGATCCATATAGTGTGCCAAAAC 59.113 41.667 11.44 0.00 0.00 2.43
1375 2055 7.147567 TGCCTCAAGTATATATTTCACACTGGA 60.148 37.037 0.00 0.00 0.00 3.86
1444 2337 3.470709 CTGTGATCGCCATTCCACTATT 58.529 45.455 3.31 0.00 0.00 1.73
1450 2346 2.325583 TAACCTGTGATCGCCATTCC 57.674 50.000 3.31 0.00 0.00 3.01
1648 2544 1.675641 GGTGGTGGGAGATGTGTGC 60.676 63.158 0.00 0.00 0.00 4.57
1687 2583 8.631676 TTGAACGTTAAATTGGTAGAAAAACC 57.368 30.769 0.00 0.00 40.19 3.27
1703 2601 6.556212 TGATGTGCTTTTTCTTTGAACGTTA 58.444 32.000 0.00 0.00 0.00 3.18
1710 2608 7.127686 GGTTTCATTGATGTGCTTTTTCTTTG 58.872 34.615 0.00 0.00 0.00 2.77
1712 2610 6.347696 TGGTTTCATTGATGTGCTTTTTCTT 58.652 32.000 0.00 0.00 0.00 2.52
1714 2612 6.424509 TCATGGTTTCATTGATGTGCTTTTTC 59.575 34.615 0.00 0.00 0.00 2.29
1716 2614 5.856156 TCATGGTTTCATTGATGTGCTTTT 58.144 33.333 0.00 0.00 0.00 2.27
1735 2635 9.775854 ACAAAGATAAATCTAGTCCATCTCATG 57.224 33.333 0.00 0.00 35.76 3.07
1756 2656 4.566360 CACCTTAAGGCAACAACAACAAAG 59.434 41.667 21.92 0.00 39.32 2.77
1759 2659 2.428890 CCACCTTAAGGCAACAACAACA 59.571 45.455 21.92 0.00 39.32 3.33
1760 2660 2.223947 CCCACCTTAAGGCAACAACAAC 60.224 50.000 21.92 0.00 39.32 3.32
1762 2662 1.698506 CCCACCTTAAGGCAACAACA 58.301 50.000 21.92 0.00 39.32 3.33
1908 2821 3.153270 GAGCACTAGGTAGGCCGCC 62.153 68.421 10.92 10.92 40.50 6.13
2003 2916 7.902032 TCAACTTAACTAACGAGAAACAACAG 58.098 34.615 0.00 0.00 0.00 3.16
2029 2943 3.880047 ACCGTTATCGTGATTCCTTCA 57.120 42.857 0.00 0.00 35.01 3.02
2030 2944 5.321516 CAAAACCGTTATCGTGATTCCTTC 58.678 41.667 0.00 0.00 35.01 3.46
2031 2945 4.155280 CCAAAACCGTTATCGTGATTCCTT 59.845 41.667 0.00 0.00 35.01 3.36
2064 2978 2.551459 CCAACTCAAAGAGCTGACCAAG 59.449 50.000 0.00 0.00 32.04 3.61
2246 3443 0.951040 CCCAGCTGAACTCGTTGACC 60.951 60.000 17.39 0.00 0.00 4.02
2316 3513 1.185189 CATGCATGAATCGTTGTGCG 58.815 50.000 22.59 0.00 40.34 5.34
2317 3514 0.918619 GCATGCATGAATCGTTGTGC 59.081 50.000 30.64 8.44 38.05 4.57
2318 3515 1.133598 AGGCATGCATGAATCGTTGTG 59.866 47.619 30.64 1.04 0.00 3.33
2320 3517 1.268896 GGAGGCATGCATGAATCGTTG 60.269 52.381 30.64 2.71 0.00 4.10
2321 3518 1.027357 GGAGGCATGCATGAATCGTT 58.973 50.000 30.64 7.72 0.00 3.85
2322 3519 0.107066 TGGAGGCATGCATGAATCGT 60.107 50.000 30.64 13.82 0.00 3.73
2323 3520 1.244816 ATGGAGGCATGCATGAATCG 58.755 50.000 30.64 3.47 35.94 3.34
2329 3526 1.133294 TGAATCCATGGAGGCATGCAT 60.133 47.619 21.33 13.78 38.12 3.96
2331 3528 0.672342 GTGAATCCATGGAGGCATGC 59.328 55.000 21.33 9.90 37.29 4.06
2336 3533 1.402968 CTTTGCGTGAATCCATGGAGG 59.597 52.381 21.33 7.77 39.47 4.30
2350 3547 2.006888 ACATCGGTAATGGACTTTGCG 58.993 47.619 0.00 0.00 39.90 4.85
2351 3548 3.311596 GGTACATCGGTAATGGACTTTGC 59.688 47.826 0.00 0.00 46.92 3.68
2378 3575 9.784680 CTTTCAAATACTCCTGAAATCAATCAG 57.215 33.333 0.00 0.00 45.19 2.90
2380 3577 8.960591 TCCTTTCAAATACTCCTGAAATCAATC 58.039 33.333 0.00 0.00 39.97 2.67
2381 3578 8.884124 TCCTTTCAAATACTCCTGAAATCAAT 57.116 30.769 0.00 0.00 39.97 2.57
2420 3678 2.551996 AGGTTGGCCTTGTACCTGT 58.448 52.632 15.57 0.00 44.18 4.00
2504 3762 2.183555 GCAGGGAGGGACGTAACG 59.816 66.667 0.00 0.00 0.00 3.18
2505 3763 1.957765 GAGGCAGGGAGGGACGTAAC 61.958 65.000 0.00 0.00 0.00 2.50
2512 3773 3.086600 GGAGTGAGGCAGGGAGGG 61.087 72.222 0.00 0.00 0.00 4.30
2529 3790 2.263077 CGGGATGTTCTTCAGAGTTCG 58.737 52.381 0.00 0.00 0.00 3.95
2545 3806 1.497309 ATGAGAGGTTTTGGGCGGGA 61.497 55.000 0.00 0.00 0.00 5.14
2546 3807 1.000896 ATGAGAGGTTTTGGGCGGG 60.001 57.895 0.00 0.00 0.00 6.13
2547 3808 0.035056 AGATGAGAGGTTTTGGGCGG 60.035 55.000 0.00 0.00 0.00 6.13
2548 3809 1.740025 GAAGATGAGAGGTTTTGGGCG 59.260 52.381 0.00 0.00 0.00 6.13
2601 3864 0.994995 CTGAATCGCGTGTGAAGAGG 59.005 55.000 5.77 0.00 0.00 3.69
2610 3873 0.443869 GCATGTTCACTGAATCGCGT 59.556 50.000 5.77 0.00 0.00 6.01
2619 3882 2.494059 GTGGTGTACTGCATGTTCACT 58.506 47.619 18.21 0.00 43.55 3.41
2668 3931 2.507324 GGACTCGAGCGTCTTGGC 60.507 66.667 13.61 0.00 34.38 4.52
2680 3943 3.462678 GGAGACGCCCCAGGACTC 61.463 72.222 0.00 0.00 0.00 3.36
2721 3984 2.683933 TGGTCCGGGGAGAAGCTC 60.684 66.667 0.00 0.00 0.00 4.09
2856 4221 0.769873 CCTTGATGGAGGGGATGGAG 59.230 60.000 0.00 0.00 38.35 3.86
2928 4293 4.323477 TTCGGGTTGGGGTCGCTG 62.323 66.667 0.00 0.00 0.00 5.18
3111 4476 5.884792 TGTGGTCTACTACTAGTAAGAAGCC 59.115 44.000 3.76 4.58 29.00 4.35
3114 4479 9.750783 ATCTTTGTGGTCTACTACTAGTAAGAA 57.249 33.333 3.76 0.00 29.00 2.52
3152 4517 6.834451 ACAGAGCATAGTAGTACCAGTTGTAT 59.166 38.462 0.00 0.00 0.00 2.29
3154 4519 5.017490 ACAGAGCATAGTAGTACCAGTTGT 58.983 41.667 0.00 0.00 0.00 3.32
3155 4520 5.584253 ACAGAGCATAGTAGTACCAGTTG 57.416 43.478 0.00 0.00 0.00 3.16
3156 4521 5.624738 GCAACAGAGCATAGTAGTACCAGTT 60.625 44.000 0.00 0.00 0.00 3.16
3188 4607 4.741185 GTCACAAGTACATTACACACGTGA 59.259 41.667 25.01 0.00 0.00 4.35
3204 4623 3.957671 AGCGAATGCATATGTCACAAG 57.042 42.857 0.00 0.31 46.23 3.16
3209 4628 3.393800 ACTGGTAGCGAATGCATATGTC 58.606 45.455 0.00 0.00 46.23 3.06
3315 4737 1.283321 ACTTGGGGAGAAGAATCCTGC 59.717 52.381 0.00 0.00 39.50 4.85
3345 6093 5.214293 TGGTTATAGTTAGGGAGAGGAACC 58.786 45.833 0.00 0.00 35.45 3.62
3357 6105 5.785123 AGGGCCTAAGTCTGGTTATAGTTA 58.215 41.667 2.82 0.00 0.00 2.24
3360 6108 3.579151 GGAGGGCCTAAGTCTGGTTATAG 59.421 52.174 5.73 0.00 0.00 1.31
3366 6114 0.618968 AGTGGAGGGCCTAAGTCTGG 60.619 60.000 5.73 0.00 34.31 3.86
3395 6143 5.613358 ATGCAGAGTAAAAAGAACCGAAG 57.387 39.130 0.00 0.00 0.00 3.79
3396 6144 7.681939 AATATGCAGAGTAAAAAGAACCGAA 57.318 32.000 0.00 0.00 0.00 4.30
3397 6145 7.494625 CCTAATATGCAGAGTAAAAAGAACCGA 59.505 37.037 0.00 0.00 0.00 4.69
3398 6146 7.280205 ACCTAATATGCAGAGTAAAAAGAACCG 59.720 37.037 0.00 0.00 0.00 4.44
3399 6147 8.507524 ACCTAATATGCAGAGTAAAAAGAACC 57.492 34.615 0.00 0.00 0.00 3.62
3402 6150 9.733556 TCAAACCTAATATGCAGAGTAAAAAGA 57.266 29.630 0.00 0.00 0.00 2.52
3403 6151 9.774742 GTCAAACCTAATATGCAGAGTAAAAAG 57.225 33.333 0.00 0.00 0.00 2.27
3404 6152 8.736244 GGTCAAACCTAATATGCAGAGTAAAAA 58.264 33.333 0.00 0.00 34.73 1.94
3405 6153 7.065324 CGGTCAAACCTAATATGCAGAGTAAAA 59.935 37.037 0.00 0.00 35.66 1.52
3406 6154 6.537301 CGGTCAAACCTAATATGCAGAGTAAA 59.463 38.462 0.00 0.00 35.66 2.01
3407 6155 6.046593 CGGTCAAACCTAATATGCAGAGTAA 58.953 40.000 0.00 0.00 35.66 2.24
3408 6156 5.361571 TCGGTCAAACCTAATATGCAGAGTA 59.638 40.000 0.00 0.00 35.66 2.59
3409 6157 4.161565 TCGGTCAAACCTAATATGCAGAGT 59.838 41.667 0.00 0.00 35.66 3.24
3410 6158 4.693283 TCGGTCAAACCTAATATGCAGAG 58.307 43.478 0.00 0.00 35.66 3.35
3411 6159 4.746535 TCGGTCAAACCTAATATGCAGA 57.253 40.909 0.00 0.00 35.66 4.26
3412 6160 4.876107 ACTTCGGTCAAACCTAATATGCAG 59.124 41.667 0.00 0.00 35.66 4.41
3413 6161 4.839121 ACTTCGGTCAAACCTAATATGCA 58.161 39.130 0.00 0.00 35.66 3.96
3414 6162 5.405331 GACTTCGGTCAAACCTAATATGC 57.595 43.478 0.00 0.00 43.91 3.14
3427 6175 4.455877 AGTTGGATGAAATTGACTTCGGTC 59.544 41.667 0.00 0.00 44.66 4.79
3428 6176 4.398319 AGTTGGATGAAATTGACTTCGGT 58.602 39.130 0.00 0.00 0.00 4.69
3429 6177 5.376854 AAGTTGGATGAAATTGACTTCGG 57.623 39.130 0.00 0.00 0.00 4.30
3430 6178 6.360681 GTCAAAGTTGGATGAAATTGACTTCG 59.639 38.462 8.70 0.00 38.47 3.79
3431 6179 6.642540 GGTCAAAGTTGGATGAAATTGACTTC 59.357 38.462 13.97 0.00 39.91 3.01
3432 6180 6.098124 TGGTCAAAGTTGGATGAAATTGACTT 59.902 34.615 13.97 0.00 39.91 3.01
3433 6181 5.598005 TGGTCAAAGTTGGATGAAATTGACT 59.402 36.000 13.97 0.00 39.91 3.41
3434 6182 5.841810 TGGTCAAAGTTGGATGAAATTGAC 58.158 37.500 7.68 7.68 39.61 3.18
3435 6183 6.477053 TTGGTCAAAGTTGGATGAAATTGA 57.523 33.333 0.00 0.00 0.00 2.57
3436 6184 6.774354 CTTGGTCAAAGTTGGATGAAATTG 57.226 37.500 0.00 0.00 0.00 2.32
3477 6225 9.638239 GATATTGGTGTTGTTATGTGAATGTTT 57.362 29.630 0.00 0.00 0.00 2.83
3478 6226 8.801299 TGATATTGGTGTTGTTATGTGAATGTT 58.199 29.630 0.00 0.00 0.00 2.71
3479 6227 8.347004 TGATATTGGTGTTGTTATGTGAATGT 57.653 30.769 0.00 0.00 0.00 2.71
3480 6228 9.806203 AATGATATTGGTGTTGTTATGTGAATG 57.194 29.630 0.00 0.00 0.00 2.67
3483 6231 9.898152 TCTAATGATATTGGTGTTGTTATGTGA 57.102 29.630 0.00 0.00 0.00 3.58
3484 6232 9.935682 GTCTAATGATATTGGTGTTGTTATGTG 57.064 33.333 0.00 0.00 0.00 3.21
3485 6233 9.905713 AGTCTAATGATATTGGTGTTGTTATGT 57.094 29.630 0.00 0.00 0.00 2.29
3489 6237 9.113838 GATGAGTCTAATGATATTGGTGTTGTT 57.886 33.333 0.00 0.00 0.00 2.83
3490 6238 8.489489 AGATGAGTCTAATGATATTGGTGTTGT 58.511 33.333 0.00 0.00 31.36 3.32
3491 6239 8.899427 AGATGAGTCTAATGATATTGGTGTTG 57.101 34.615 0.00 0.00 31.36 3.33
3492 6240 9.334947 CAAGATGAGTCTAATGATATTGGTGTT 57.665 33.333 0.00 0.00 33.30 3.32
3493 6241 7.935755 CCAAGATGAGTCTAATGATATTGGTGT 59.064 37.037 5.90 0.00 33.30 4.16
3494 6242 8.152898 TCCAAGATGAGTCTAATGATATTGGTG 58.847 37.037 11.46 0.00 33.30 4.17
3495 6243 8.267620 TCCAAGATGAGTCTAATGATATTGGT 57.732 34.615 11.46 0.00 33.30 3.67
3496 6244 9.736414 ATTCCAAGATGAGTCTAATGATATTGG 57.264 33.333 7.24 7.24 33.30 3.16
3573 6321 9.418045 GCTTTGCTAAGTTTGACCAAATTTATA 57.582 29.630 9.64 2.68 33.85 0.98
3574 6322 8.150296 AGCTTTGCTAAGTTTGACCAAATTTAT 58.850 29.630 9.64 0.00 36.99 1.40
3575 6323 7.496747 AGCTTTGCTAAGTTTGACCAAATTTA 58.503 30.769 9.64 9.17 36.99 1.40
3576 6324 6.348498 AGCTTTGCTAAGTTTGACCAAATTT 58.652 32.000 9.64 8.03 36.99 1.82
3577 6325 5.917462 AGCTTTGCTAAGTTTGACCAAATT 58.083 33.333 9.64 0.00 36.99 1.82
3578 6326 5.535753 AGCTTTGCTAAGTTTGACCAAAT 57.464 34.783 9.64 0.00 36.99 2.32
3579 6327 5.337578 AAGCTTTGCTAAGTTTGACCAAA 57.662 34.783 9.00 0.00 38.25 3.28
3585 6333 5.172053 CGAAAGTCAAGCTTTGCTAAGTTTG 59.828 40.000 24.14 24.14 46.54 2.93
3586 6334 5.273944 CGAAAGTCAAGCTTTGCTAAGTTT 58.726 37.500 9.64 6.95 46.54 2.66
3587 6335 4.261197 CCGAAAGTCAAGCTTTGCTAAGTT 60.261 41.667 9.64 0.28 46.54 2.66
3588 6336 3.251004 CCGAAAGTCAAGCTTTGCTAAGT 59.749 43.478 9.64 0.00 46.54 2.24
3589 6337 3.814945 CCGAAAGTCAAGCTTTGCTAAG 58.185 45.455 0.00 3.31 46.54 2.18
3590 6338 2.031157 GCCGAAAGTCAAGCTTTGCTAA 60.031 45.455 0.00 0.00 46.54 3.09
3591 6339 1.535462 GCCGAAAGTCAAGCTTTGCTA 59.465 47.619 0.00 0.00 46.54 3.49
3592 6340 0.312102 GCCGAAAGTCAAGCTTTGCT 59.688 50.000 0.00 0.00 46.54 3.91
3593 6341 0.030638 TGCCGAAAGTCAAGCTTTGC 59.969 50.000 0.00 0.00 46.54 3.68
3594 6342 2.490328 TTGCCGAAAGTCAAGCTTTG 57.510 45.000 0.00 0.00 46.54 2.77
3595 6343 6.004075 TGGATTTGCCGAAAGTCAAGCTTT 62.004 41.667 0.00 0.00 41.46 3.51
3596 6344 2.029918 GGATTTGCCGAAAGTCAAGCTT 60.030 45.455 0.00 0.00 39.52 3.74
3597 6345 1.541588 GGATTTGCCGAAAGTCAAGCT 59.458 47.619 0.00 0.00 0.00 3.74
3598 6346 1.269448 TGGATTTGCCGAAAGTCAAGC 59.731 47.619 0.00 0.00 40.66 4.01
3599 6347 3.641437 TTGGATTTGCCGAAAGTCAAG 57.359 42.857 0.00 0.00 40.66 3.02
3600 6348 3.320541 ACATTGGATTTGCCGAAAGTCAA 59.679 39.130 0.00 0.00 40.66 3.18
3601 6349 2.890311 ACATTGGATTTGCCGAAAGTCA 59.110 40.909 0.00 0.00 40.66 3.41
3602 6350 3.244976 CACATTGGATTTGCCGAAAGTC 58.755 45.455 0.00 0.00 40.66 3.01
3603 6351 2.610232 GCACATTGGATTTGCCGAAAGT 60.610 45.455 0.00 0.00 40.66 2.66
3604 6352 1.994779 GCACATTGGATTTGCCGAAAG 59.005 47.619 0.00 0.00 40.66 2.62
3605 6353 1.342496 TGCACATTGGATTTGCCGAAA 59.658 42.857 0.00 0.00 40.66 3.46
3606 6354 0.964700 TGCACATTGGATTTGCCGAA 59.035 45.000 0.00 0.00 40.66 4.30
3607 6355 0.527113 CTGCACATTGGATTTGCCGA 59.473 50.000 0.00 0.00 40.66 5.54
3608 6356 0.527113 TCTGCACATTGGATTTGCCG 59.473 50.000 0.00 0.00 40.66 5.69
3609 6357 1.547372 ACTCTGCACATTGGATTTGCC 59.453 47.619 0.00 0.00 35.26 4.52
3610 6358 4.439305 TTACTCTGCACATTGGATTTGC 57.561 40.909 0.00 0.00 36.76 3.68
3611 6359 6.366877 CCTTTTTACTCTGCACATTGGATTTG 59.633 38.462 0.00 0.00 0.00 2.32
3612 6360 6.267471 TCCTTTTTACTCTGCACATTGGATTT 59.733 34.615 0.00 0.00 0.00 2.17
3613 6361 5.774690 TCCTTTTTACTCTGCACATTGGATT 59.225 36.000 0.00 0.00 0.00 3.01
3614 6362 5.183904 GTCCTTTTTACTCTGCACATTGGAT 59.816 40.000 0.00 0.00 0.00 3.41
3615 6363 4.518970 GTCCTTTTTACTCTGCACATTGGA 59.481 41.667 0.00 0.00 0.00 3.53
3616 6364 4.321230 GGTCCTTTTTACTCTGCACATTGG 60.321 45.833 0.00 0.00 0.00 3.16
3617 6365 4.613622 CGGTCCTTTTTACTCTGCACATTG 60.614 45.833 0.00 0.00 0.00 2.82
3618 6366 3.502211 CGGTCCTTTTTACTCTGCACATT 59.498 43.478 0.00 0.00 0.00 2.71
3619 6367 3.074412 CGGTCCTTTTTACTCTGCACAT 58.926 45.455 0.00 0.00 0.00 3.21
3620 6368 2.489971 CGGTCCTTTTTACTCTGCACA 58.510 47.619 0.00 0.00 0.00 4.57
3621 6369 1.804748 CCGGTCCTTTTTACTCTGCAC 59.195 52.381 0.00 0.00 0.00 4.57
3622 6370 1.695242 TCCGGTCCTTTTTACTCTGCA 59.305 47.619 0.00 0.00 0.00 4.41
3623 6371 2.347731 CTCCGGTCCTTTTTACTCTGC 58.652 52.381 0.00 0.00 0.00 4.26
3624 6372 2.354805 CCCTCCGGTCCTTTTTACTCTG 60.355 54.545 0.00 0.00 0.00 3.35
3625 6373 1.907255 CCCTCCGGTCCTTTTTACTCT 59.093 52.381 0.00 0.00 0.00 3.24
3626 6374 1.904537 TCCCTCCGGTCCTTTTTACTC 59.095 52.381 0.00 0.00 0.00 2.59
3627 6375 1.907255 CTCCCTCCGGTCCTTTTTACT 59.093 52.381 0.00 0.00 0.00 2.24
3628 6376 1.627329 ACTCCCTCCGGTCCTTTTTAC 59.373 52.381 0.00 0.00 0.00 2.01
3629 6377 2.034436 ACTCCCTCCGGTCCTTTTTA 57.966 50.000 0.00 0.00 0.00 1.52
3630 6378 1.907255 CTACTCCCTCCGGTCCTTTTT 59.093 52.381 0.00 0.00 0.00 1.94
3631 6379 1.078324 TCTACTCCCTCCGGTCCTTTT 59.922 52.381 0.00 0.00 0.00 2.27
3632 6380 0.708802 TCTACTCCCTCCGGTCCTTT 59.291 55.000 0.00 0.00 0.00 3.11
3633 6381 0.033306 GTCTACTCCCTCCGGTCCTT 60.033 60.000 0.00 0.00 0.00 3.36
3634 6382 1.614160 GTCTACTCCCTCCGGTCCT 59.386 63.158 0.00 0.00 0.00 3.85
3635 6383 1.455402 GGTCTACTCCCTCCGGTCC 60.455 68.421 0.00 0.00 0.00 4.46
3636 6384 0.324091 TTGGTCTACTCCCTCCGGTC 60.324 60.000 0.00 0.00 0.00 4.79
3637 6385 0.115745 TTTGGTCTACTCCCTCCGGT 59.884 55.000 0.00 0.00 0.00 5.28
3638 6386 1.066358 GTTTTGGTCTACTCCCTCCGG 60.066 57.143 0.00 0.00 0.00 5.14
3639 6387 1.066358 GGTTTTGGTCTACTCCCTCCG 60.066 57.143 0.00 0.00 0.00 4.63
3640 6388 1.982958 TGGTTTTGGTCTACTCCCTCC 59.017 52.381 0.00 0.00 0.00 4.30
3641 6389 3.782656 TTGGTTTTGGTCTACTCCCTC 57.217 47.619 0.00 0.00 0.00 4.30
3642 6390 3.397955 ACATTGGTTTTGGTCTACTCCCT 59.602 43.478 0.00 0.00 0.00 4.20
3643 6391 3.756963 GACATTGGTTTTGGTCTACTCCC 59.243 47.826 0.00 0.00 0.00 4.30
3644 6392 4.394729 TGACATTGGTTTTGGTCTACTCC 58.605 43.478 0.00 0.00 0.00 3.85
3645 6393 6.385649 TTTGACATTGGTTTTGGTCTACTC 57.614 37.500 0.00 0.00 0.00 2.59
3646 6394 6.976934 ATTTGACATTGGTTTTGGTCTACT 57.023 33.333 0.00 0.00 0.00 2.57
3658 6406 9.918630 AAAGACTAGAAATGAATTTGACATTGG 57.081 29.630 0.00 0.00 37.89 3.16
3664 6412 6.493115 TGCCCAAAGACTAGAAATGAATTTGA 59.507 34.615 0.00 0.00 0.00 2.69
3691 6440 0.250510 TTGCGTTGTGTAGGGCATCA 60.251 50.000 0.00 0.00 35.03 3.07
3703 6452 2.343163 TTTTGGCTCCGGTTGCGTTG 62.343 55.000 0.00 0.00 0.00 4.10
3705 6454 2.070654 CTTTTTGGCTCCGGTTGCGT 62.071 55.000 0.00 0.00 0.00 5.24
3707 6456 0.387565 TTCTTTTTGGCTCCGGTTGC 59.612 50.000 0.00 7.56 0.00 4.17
3724 6474 1.946081 GAGCTAGCTGCCCAGAAATTC 59.054 52.381 24.99 0.00 44.23 2.17
3734 6484 2.587473 GCCCTTCGAGCTAGCTGC 60.587 66.667 24.99 14.58 43.29 5.25
3735 6485 1.520342 GTGCCCTTCGAGCTAGCTG 60.520 63.158 24.99 14.56 0.00 4.24
3762 6667 8.316640 GAATTGACAAACAAGTCTACTGATCT 57.683 34.615 0.00 0.00 46.03 2.75
3780 6685 4.272748 GCCACTCCGTATAAAGGAATTGAC 59.727 45.833 0.57 0.00 37.32 3.18
3838 8181 2.592102 AAAGGTGCCACATCATCACT 57.408 45.000 0.00 0.00 0.00 3.41
3909 9090 3.661648 GGGTGGGCAGTGGATGGT 61.662 66.667 0.00 0.00 0.00 3.55
3934 9151 3.777925 CAAGACGTGCTTCCGCCG 61.778 66.667 0.00 0.00 33.60 6.46
3948 9165 7.424803 TGACACAAAATGAAATACAGGACAAG 58.575 34.615 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.