>input_sequence_37496
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------------------------------------------------------------------------ATGGCGAC
AATGGCGGTTAAGGTGTGGGTGGTGGCAATGATGCTGGTTGTGCACTGCTTCGACGTAGGGCTTGGAGCTGGAGGCGACG
GCCTGTGCCTGGGCTCGCCCGACTACGGCGACGCGCTAGCCAAGGCCATCCTCTTCTTCGAGGGGCAGCGGTCGGGGCGG
CTGCCGGCTAACCAGAGAGTCAGTTGGCGCGGCAACTCCGCGCTCGCCGACGGCCGACCTGAAAACGTATGGTCTCTTAT
AGTTAACTTATGATCATGAGCCACTGCTCCCCTCCTA--CGTTTGAATATGTTTGTTTA--ATCTAGATA---TGAGTTT
TCTCTTCAGCACATGCAAAACGAAAGCGGACCATGTTTTGGCACACTATATGGATCCAGTGTGAAATATATACTTGAGGC
AATTAATCAATGGAA-----------------------------------------------------------------
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--------------------------------------------------------------------TCAATGAAATTT
GAAATAGTGATATATTA---ATAGTGGAATGGCGATCACAGGTTAACCTGACGGGTGGGTACTACGACGCCGGCGACAAC
GTCAAGTTCGGGTTCCCGATGGCCTTCACGGTGACCCTGCTGAGCTGGAGCGCCATCGAGTTCCGTGGCGACGTCGCGGC
GGCGGGGCAGCTGGGCAACCTCGGGGCCGCCATCCATTGGGGCGCTGATTTCCTGCTCCGCGCGCACACATCTCCCACCA
CCCTCTATACCCAGGTCTGGTTGGT--TTTTCTACCAATTTAACGTTCAAAGAAA--AAGCACATCAATGAAACCATGAG
ATGGACTAGATTTATCTTTGTT----------GTTGTTGCCTT---AAGGTGGGGGACGGGAACGCCGACCACGGGTGCT
GGGAGCGGCCGGAGGACATGGACACGCCGAGGACCCTGTACAAGGTCACCGCGGACTCGCCCGGGTCGGAGGCCGCCGGC
GAGGCGGCTGCGGCGCTCGCGGCGGCCTACCTAGTGCTCAAGGAAGACGGCGACAAGGCGTTCGCCTCGCGGCTCCTGGC
CGCGTCCAAATCGGTACGCACGAAGCATGCATGTGCTGTTGTTTCTCGTTAGTTAAGTTG-ATGAAGGAATCACGATAAC
GGTTTTGGTTTTTTTGGC--------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------TTGGTCAGCTCTTTGAGTTGGCCAACAATTACAGGGG
ATCCTTCCAGTCGTCCTGCCCCTTCTACTGCTCCTACTCCGGCTTT----------------------------------
----------------------------------------------------------------CAGGATGAGCTGCTCT
GGGCCTCGGCGTGGCTCTACCGGGCGACCAAGGACGGCAAGTACCTCGACTTCCTGCGCCAGAACCAGGGCTCCAGCAAC
CCGGTCAACGAGTTCAGCTGGGACAACAAGCAGGTTGGAGCCCAGATGCTCGCAACACAGGTGGGTCGCACTCGCACAAC
GATTCATGCATGCCTCCATGGATTCACGCAAAGTCCATTACCGATGTACCATCTCTGAT---------------------
----------------------------------------TGATTTCAGGAGTATTTGAAAGGAAGGAGAGAGCTAGACA
GGTACAAGGCCAACCTGGACTCCTTCGTCTGCGCCCTCATGCCTGACAGCGGCAATACGCAGATACGCACAACTCGTGGT
ACGTTAC---GTCCCTCCCTGCCTCACTCCGAACTCTGAAGAACATCCCGCCCAAAACCTCTCATCTTCTCCACACGACC
--GGTGCTTGCCGCAGGAGGGCTCCTCTTCACACGCGATTCAGTGAACATGCAGTACACCACCACGGCGGCCCTCGTGCT
CTCCATCTACGCCAAGACGCTCGAGTCCTGGGGCGTCTCCGACGGCGTCCGCTGCAGCGCCGCGAGCTTCTCCCCGGACC
AGATCGCCTCGTTCGCCGCGTC----------------------------------------------------------
--------------------------------------------GCAGGTCGACTACATCCTGGGGAGCAACCCGATGGG
CATGTCGTACATGGCGGGCTTCGGCGGCGCCTTCCCGCGGCGCATCCACCACCGCGCCGCCTCCATCCCCTCCATCAAGG
TGCTCACCCGGACGGTCCCCTGCAACGAGGGCTTCTCCTCCTGGCTGCCCACCAGCGACCCCAACCCGAACGTCCATGTC
GGCGCCATCGTCGGAGGGCCCGACGAGAACGACCAGTTCGGGGACAACAGGGGGGACTCGGCGCACTCCGAGCCGGCCAC
CTACATCAACGCCGCCTTCGTGGGCGCCTGTGCTGCTGCCATGGGGCAGAGCCAGAAGCCTGCGTCGCCGACTTTGGCTT
CTTACTAG------------------------------------------------------------------------
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-------------------------------------------------------------------
>chr1A_1_TraesCS1A01G088700
CCAAGATAAAAAGGTGCGGCCTGCAGTCAACGAGTGCGCCACATATTTTTATCTAAACCTAGTTGTAACATTACATACGG
GTATATTTGGCCAACCGTGTGCCATAAAAATTTAGCATCTCACAGACATTTGTATTTATCAACCCGCGTGATGTAAAGTT
TAACGCCACATGCATTTGTATTTATTAACCCGTGTGATGCAAAGTTGGCATCACACATAGGTGGTGTTTGGTTCTCTAGT
CCTAGGACTTTTTCTAGTTCCGCTAGACTTTTTGAAAAAGACTCTCAAGAAGGTGCTTCTAAGGACTTTTAGCAAAAAGT
CCCAAAAAAATCTCACCTTGTTTGGTTTGCTAGGGACTTTTTCTAGTCCCAACACAAAAAAGTCTTTGAAACCAAACGCC
CCCCATAGTTATTTTCGTCGTGTGTTTTGAGGCACCCC---AGCACACCACACTGCTTCAGTGGAAGTTGGATTGCCTAG
TCGATTTTGAGTTCGACGT---------------------------CTAACTTGCATTTGTTTACTTGGACTTCTATTTG
AAACTACTCCTCATCCGAGGTGGAATTATTTGGTGTTGTTCAAAGAAATGCTTCAAATTCGTTTGGTTTGGGTTCGACCC
CGATCGATAGTCTGAGTTCTGTGCGACGC--------TTTCCCACGCCGGCCGTGTGTGAT-----TTTTTTTCTCCTTG
TGCGATGCAGAAATCTGCACCAGTGTGATAAATGCATGGGCATGGGCACGGGCCTTACTATTAGG---------------
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-----------------------------------------AGGTCAAGCATTTCTAGGGCAAATTAGTGCACAAATGCT
ACACTCTTTGCGTTTGCTTTGCCCCAGCTAGCACACCACATGCACTTGCATGCAGCTCCATGGATGGAATCTCGATTCTC
ATCACACACCATCATCACACTATAAATACATGGCTC--------GGCACT-----TTGCATCCATCACAAGAAGGAAAAG
AAGAGAGCAGACACGCGCGCGCGCTTACACGCTACACATATACACATTGTTTCCTAGCTAGAACCTAGATACATGGCGAC
AATGGCGGTTAAGGTGTGGGTGGTGGCAATGATGCTGGTTGTGCACTGCTTCGACGTAGGGCTTGGAGCTGGAGGCGACG
GCCTGTGCCTGGGCTCGCCCGACTACGGCGACGCGCTAGCCAAGGCCATCCTCTTCTTCGAGGGGCAGCGGTCGGGGCGG
CTGCCGGCTAACCAGAGAGTCAGTTGGCGCGGCAACTCCGCGCTCGCCGACGGCCGACCTGAAAACGTATGGTCTCTTAT
AGTTAACTTATGATCATGAGCCACTGCTCCCCTCCTA--CGTTTGAATATGTTTGTTTA--ATCTAGATA---TGAGTTT
TCTCTTCAGCACATGCAAAACGAAAGCGGACCATGTTTTGGCACACTATATGGATCCAGTGTGAAATATATACTTGAGGC
AATTAATCAATGGAA-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------TCAATGAAATTT
GAAATAGTGATATATTA---ATAGTGGAATGGCGATCACAGGTTAACCTGACGGGTGGGTACTACGACGCCGGCGACAAC
GTCAAGTTCGGGTTCCCGATGGCCTTCACGGTGACCCTGCTGAGCTGGAGCGCCATCGAGTTCCGTGGCGACGTCGCGGC
GGCGGGGCAGCTGGGCAACCTCGGGGCCGCCATCCATTGGGGCGCTGATTTCCTGCTCCGCGCGCACACATCTCCCACCA
CCCTCTATACCCAGGTCTGGTTGGT--TTTTCTACCAATTTAACGTTCAAAGAAA--AAGCACATCAATGAAACCATGAG
ATGGACTAGATTTATCTTTGTT----------GTTGTTGCCTT---AAGGTGGGGGACGGGAACGCCGACCACGGGTGCT
GGGAGCGGCCGGAGGACATGGACACGCCGAGGACCCTGTACAAGGTCACCGCGGACTCGCCCGGGTCGGAGGCCGCCGGC
GAGGCGGCTGCGGCGCTCGCGGCGGCCTACCTAGTGCTCAAGGAAGACGGCGACAAGGCGTTCGCCTCGCGGCTCCTGGC
CGCGTCCAAATCGGTACGCACGAAGCATGCATGTGCTGTTGTTTCTCGTTAGTTAAGTTG-ATGAAGGAATCACGATAAC
GGTTTTGGTTTTTTTGGC--------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------TTGGTCAGCTCTTTGAGTTGGCCAACAATTACAGGGG
ATCCTTCCAGTCGTCCTGCCCCTTCTACTGCTCCTACTCCGGCTTT----------------------------------
----------------------------------------------------------------CAGGATGAGCTGCTCT
GGGCCTCGGCGTGGCTCTACCGGGCGACCAAGGACGGCAAGTACCTCGACTTCCTGCGCCAGAACCAGGGCTCCAGCAAC
CCGGTCAACGAGTTCAGCTGGGACAACAAGCAGGTTGGAGCCCAGATGCTCGCAACACAGGTGGGTCGCACTCGCACAAC
GATTCATGCATGCCTCCATGGATTCACGCAAAGTCCATTACCGATGTACCATCTCTGAT---------------------
----------------------------------------TGATTTCAGGAGTATTTGAAAGGAAGGAGAGAGCTAGACA
GGTACAAGGCCAACCTGGACTCCTTCGTCTGCGCCCTCATGCCTGACAGCGGCAATACGCAGATACGCACAACTCGTGGT
ACGTTAC---GTCCCTCCCTGCCTCACTCCGAACTCTGAAGAACATCCCGCCCAAAACCTCTCATCTTCTCCACACGACC
--GGTGCTTGCCGCAGGAGGGCTCCTCTTCACACGCGATTCAGTGAACATGCAGTACACCACCACGGCGGCCCTCGTGCT
CTCCATCTACGCCAAGACGCTCGAGTCCTGGGGCGTCTCCGACGGCGTCCGCTGCAGCGCCGCGAGCTTCTCCCCGGACC
AGATCGCCTCGTTCGCCGCGTC----------------------------------------------------------
--------------------------------------------GCAGGTCGACTACATCCTGGGGAGCAACCCGATGGG
CATGTCGTACATGGCGGGCTTCGGCGGCGCCTTCCCGCGGCGCATCCACCACCGCGCCGCCTCCATCCCCTCCATCAAGG
TGCTCACCCGGACGGTCCCCTGCAACGAGGGCTTCTCCTCCTGGCTGCCCACCAGCGACCCCAACCCGAACGTCCATGTC
GGCGCCATCGTCGGAGGGCCCGACGAGAACGACCAGTTCGGGGACAACAGGGGGGACTCGGCGCACTCCGAGCCGGCCAC
CTACATCAACGCCGCCTTCGTGGGCGCCTGTGCTGCTGCCATGGGGCAGAGCCAGAAGCCTGCGTCGCCGACTTTGGCTT
CTTACTAGTAGTAGACCACAAAGATATGCGCACTCGATACA-----------------------ACTGG-----------
--------------------TACTACTATGCTCTGTTGCTAAATTTTCACGTGTGTAATGTACTTGTGACATATGCATTC
GCTACCAGTACTCTGTACTTGTTCGTGATCGCCGTACTATATATGTTTGTAATG---TAACAAGACATAAAAATACAGTA
CCAAGTTTATATCAGCGCAGG-----------------------------------------------------------
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-------------------------------------------------------------------ATTCTTCTCCCCA
AGTTTGCAACTCGGTTCCTCTCCCTAACTATAACCAGACTTAGGCCCTCCACTATATACTCCCTTCGGTTCTTTTTACTC
TGCATATTAGGTTTGACCGAAGTCAATTTCATCCAACTTTGACCAAGTTTATACAAAAAATTATAAACATTCACATAACA
ACACCAATATCATTAGACTCATCTTGGAATATATTTTTATATTATATTTATTACATATTATAGATGCTAATAATTTCTAA
TATAAATTTGGTCAAACTTAGCAAAGCTTGACTTTCGGCAAATCCAATGTGCAGAGTAAAAAGGACCGGAGGGAGTAGAC
CAAAACCAATGTCAAATTCATTT-CTAGTCTTTGGGCACTGATGCCCTACACAACGCAACCGGAGCCA-AAAAGAATTTC
TGGGC---------------------------------------------------------------------------
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AGCTAGCTCGAAGGGCACTGGCAGCTAGATCAGTAGACTTGTTTGTCAATTCCTTTATACGGAGTGG---------CTGT
GGAGCTGGTGTCATAATTTTT-----------------------------------------------------------
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----TTC------AGGCATCAGTGATGATGTGGCACCTTTTTGACCA---------------------------------
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--GCGAGCACGGCTTGGAGGAGAATCTTCCTCCTC---GGAGCCTGCAGACC--------ATCC--------ACTGCCCA
CCCGCAG--------------------CGCCGGCGGAAGCACGTCTTGTCCT----------------------------
--------------------------------------------------------------------------------
----------------------------------------------------GTATTTCATTTTGTGTCATCTATTTGCA
CATGTCATGAATGTGTTGCATTTGTCCTTGCACAAAGTTTTTTTT-------TTTTTTGCGAATTCTTGCAGAAAGTCAT
TGAGAGGTTGAACAAGCAAGGTGTCATTTATAAACCAATGAAGGCAGAAATTTCTGGCATTGATGTT
>chr1B_1
CCAAGATAAGAAGGTGCGACCTGCAGTCGACGAGTGCGCCACATATTTTTATTTAAACCCAGTTGTAACATTGCACATGG
GTATATTTGGCCAACCATGTGCCATCAAAATTTAGCATCACACAAACATTTGTATTTATCAACCCGCGCGATGCAAAGTT
TAACACCGCAAGCATTTGTGTTTATTAACCCGTGTGATGCAAAGTTGGCATCGCA-------------------------
--------------------------------------------------------------------------------
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---CATAGTTATTTTCGTCATGTGTTTTGAGGCACCCCCATAGCACACCGCACT-CTTCAGTGGAAGTTGGATTGCCTAG
TTGCTTTTGAGTTCGATTTGAACTAGTTTCAAGGTCCCACACTGGGCTAACTTGAATTTGCTCACTTGAACTTCTATTTG
AAACTATTCCTCGTCCGAGGTGGAATGATTTGGTGTTGTTCAAAGAAATGCTTCAAATTCGTTTGATTTGGTTTGGATCC
CGAT----AGCCTGAGTTCTGTGCG--------ACGGTTTCCTGCCCCGTGTGTGATGGGTTTTTTTTTTTTTTGCCCTG
TGCGATGCAGAAATCTGCGCCAGTGTGATAAATGCATGGGCATGGGCATGGGCCTTACTATTAGG---------------
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-----------------------------------------AGGTCAAGCATTTCTAGGGCAAATTAGTGCACAAATGCT
ACACTCTTTGCGTTTGCTTTGCCCCAGCTAGCACACCACATGCACATGCATGCAGCTCCATGGATGGAATCTCGATTCTC
AT--CACACCATCATCACACTATAAATACATGGCTCAAGCCCATGGCACTTTGCATTGCATCCATCACAAGAAGGAAAAG
AAAAGAAG----ACACGCGCGCGCTTACACGCTACATACACACACATTGTTTGCTAGCTACAACCTAGATAGATGGCGAC
AATGGCGGTTAAGGCATGGGTGGTGGCAATGATGCTGGTTGTGCACTGCTTCGACGTAGGGCTCGGAGCTGGAGGCGATG
GCCTGTGCCTGGGCTCGCCCGACTACGGCGACGCGCTGGCCAAGGCCATCCTCTTCTTCGAGGGGCAGCGGTCGGGCCGG
CTGCCGGCTAACCAGAGAGCCAGGTGGCGCAGCAACTCCGCGCTCGCCGACGGCCGACCTGAAAACGTATGGTCTCTTAT
AGTTAACTTATGATCATGAGCCACTGCTCCTCTCCTACACGTTTGAATCTGCGTGTTTTATATCTAGATA---AGAGATT
TCTCTTCAGCACATGCAAAACAAAAGCGGGCCATATTTTGGCACAC--TATGGACCCAGTGTGAAATATGTACTTGAGGC
AGTTAATCAATGGAATCAC-------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------GAGCCAGAAAAATGAAAGAAAATCCATGAAATTT
GAT-TAATGACATATTGATGATAGTAGAACGCCGATAACAGGTTAACCTGACGGGTGGGTACTACGACGCCGGCGACAAC
GTCAAGTTCGGGTTCCCGATGGCCTTCACGGTGACCCTGCTGAGCTGGAGCGCCATCGAGTACCGCGGCGACGTCGCGGC
GGCGGGGCAGCTGGGCAACCTCCGGGCCGCGATCCACTGGGGCGTCGATTTCCTGCTCCGCGCACACACATCTCCCACCA
CCCTCTATACCCAGGTTTGGTAATTGGTTTACTACCAATTCAACGTTTATAAAGAACAAGCACATCAATGAAACTATGAG
ATGGACTAGATTTATTTTGTTGTTCGTTCATCGTTGTTGCCTTCACAAGGTGGGGGACGGGAACGCCGACCACGGGTGCT
GGGAGCGGCCGGAGGACATGGACACGCCGAGGACTCTGTACAAGATCACCGCGGACTCGCCCGGATCTGAGGCCGCCGGC
GAGGCGGCTGCGGCGCTTGCAGCGGCCTACCTAGTGCTCAAGGAAGACGGTGACAAGGCGTTCGCCTCGCGGCTCCTGGC
CGCGTCCAAATCGGTACGCACGAAGCATGCATGTGGTGTTGTTTCTCGTTGGTTAAGTTG-A---AGGAATCACGATAAC
GGTTTTGTATTTTTTTTTTGG-----------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------TTTGGTCAGCTCTTTGAGTTGGCCAATAATTACAGGGG
ATCCTTCCAGTCGTCCTGCCCCTTCTACTGCTCCTACTCCGGCTTCCAGGTAGAGACCATATT---------CACTCACT
GCTGAGTCGATATATTGGTTGGTTGACAAACAAAATCTATCTAATCTAATCAATCTATGTACCGCAGGATGAGCTGCTCT
GGGCGTCGGCGTGGCTCTACCGGGCGACCAAGGATGGCAAGTACCTCGACTTCCTTCGCCAGAACCAGGGCTCCAGCAAC
CCTGTCAACGAGTTCAGCTGGGACAACAAGCAGGTTGGAGCCCAGATGCTCGCAACACAGGTGGGTCGCACATTGATTCA
TTCATGCCTCCGTCTCCATGGATTCAGAAAAAGTCCGC-ACCGCCGTACCATCTTGATTGATTTCAGGAGTTTTTTGTTT
TGTTTTTGGTGGGTGATTTC------------------------TTCAGGAGTATTTGAAAGGAAGGAGAGAGCTAGCAA
GGTACAAGGCCAACCTGGACTCCTTCGTCTGCGCCCTCATGCCTGACAGCGGCAATACGCAGATACGTACAACTCGTGGT
ATATTACGTAGTACCTCCCTGCCTCACTCTGAACTCTGAACAACA----GCCCAAAACCTCTCATCTTCTCCACATGACC
--TGTGCT----GCAGGAGGGCTTCTCTTCACGCGCGATTCGGTGAACATGCAGTACACCACCACGGCGGCCCTCGTGCT
CTCCATCTACTCCAAGGCGCTCCAGTCCTGGGACGTCTCCGACGGAGTCCACTGCAGCGCCGCAAGCTTCTCCCCGGACC
AGATCGCCTCGTTCGCCGCATCA---------------------------------------------------------
---------------------------------------------CAGGTCGACTACATCCTGGGGAGCAACCCGATGGG
CATGTCGTACATGGTGGGCTTCGGCGGCGCGTTCCCGCGGCGCATCCACCACCGCGCGGCGTCCATCCCCTCCATCGAGG
TCCTCAGCAGGAGGGTCCCCTGCAACGAGGGCTTCTCCTCGTGGCTGCCGACGAGCGACCCCAACCCGAACGTCCATGTC
GGCGCCATCGTCGGAGGGCCTGACGAGAACGACCAGTTCGGGGACAACAGGGGGGACTCCGCGCACTCCGAGCCGGCGAC
CTACATCAACGCCGCCTTTGTGGGTGCCTGTGCTGCTGCCATGGGGCAGAGTCAGAAACCTGCGTCGCCGACTTTATCGT
CTTACTAGTAG---ACCACAAAGACATGCACCTC----GTTACACGCAACGCAAGCAAGATATGCACTCGTTACAAGCAA
CCAAGATACACTGGTAACACTACTACTATGTTCTGTTGCTAAATTTCCACGTGTGTAATGTATTTGTAACATATGCATTC
GCTATCAGTACTCTGTACTTGTTCGTGATCGCCGCATTATATATATTTGTAATG---TAACAAGATCCCATCTCGCGCAC
GCTCACGAAACTGCCCTCCCGAGTCGCCCCCGCGAGGCGACCGGGAGGCGCCCCCAAATCCCCTCCAGCAGGCTTCCCGT
CTCCCGTTCCTTCCCTCGCCGCCGCCACAGGGCGCGACCGGGGCCGGCGGTTCTTCGCGGACGGACGTGGCTGCTCCAAG
GTGTGGTGCGGCGGCGACGGGGTACCACAGCGCGGCGCACGCCGGCGGTTCGAGGCAGCGGCAGATCGGCCGCGCGGTAG
GCTGTGGATGGCGGTGCATCGGCGACCTCGCTTCCCCGTGGCAGGAGGTCTTGCGATCTGATGCGTCGCGGCCGCCAAGG
ACGGCGGCGGCGTGATCGGATTGGTTCGCGGCGGCGCGGCCGGATCTATGCCCATGCGTGGGCCTTGATCGCTGGTCTGT
CGTCAGCACGGTGGTGGGTGCGACTCGTCGGTAGCTGGGCAGATCCGCGGGATTCTACCCTTGTCTGGTCCTTGACAGCG
GGCGCAACTCCGGGGGAAACCCTAGATCTCCTTGGGATCGAACGATGGCGGCGCTTTTGCGTCGTAGTCCCTCTTTAGAG
CATTGTTTTGGAGTTTGCTCCGGTTGAGGGACCAGCGACGTCGGCGGCGCACGTCTGGTGGAGCAACTGTCGATGAAAAT
CGCGCCGACTACGGTCATGGCGGACGATGGCGGCGTCTCAGATGTCGTTCCCTTGTCGAGGCATCGTCATTGCAGTCTGC
GTCATCAGGCTCGGGATGCTCCGAGGGAAACCCTAGATCTGGGTCTTCCGGATCGGTGGATGATGGCGTTTTATCGCTTT
CCCTCCTGGGGGCATCGTTTTGGAGTAAGTGCTGGCTGGGGGATGGTGGAGCGGTGCTTCATCTCACACATTGATGGCGG
CGGATATCGGTGGCATGGTGCTGTGGAGGCTCGGCGTCCGATGCACAGAGATGGACTCGCGCAGGAGGAGGTTGATGTCC
GGCGTCATGGTGACGTCGATGGCAGAGTAGCCAGACAAGGTAGAAGCCTCAATATGATCTGAAGACGGACCTGTGGAAGA
TGGCGGCGACGACACACGAGTGCGTCTGACCGGATTGTGCCCCAGACCCGGTATGTGGCTCGGCTGGGGCTTCCGAATGA
GTTTCGGCTTCCGGCTTTTGATGTTAGGCTTAGGTGAGTGGTTTGGGTAGTGGCCCAACAAGCACCCCTTCATCATTTTG
GATAGGAGTAGTGGCATATGCTGTTAAGATGGTGGATTCAGGCACATTGTTGTAATACTTTGTAAGGTCCTCGAGAATAA
TCAATAAAGTGGCCGTACGCATCTTCCAGATGCAGAGGCCGGGGGTCATCCTCCTTTTCTAAAAAAAATTCTTCTCCCCA
AGTTTGCAACTCTGTCCCTCTACCCAATTATAA-TAGACTTAGACCCTCAACTAT-------------------------
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--------------------------------------------------------------------------GTAGAC
CAAAATCGATGCCAAACTCATTTTCTAGTCTTTGGGCACCGATGCCCTACATAGCCCAGCCGGAGCCACAAAATAATTTC
TGCA----------------------------------------------------------------------------
-----------------------------------------CATAAGAGCAAATAGGTGCTCCGATGCCAAATTCTTCAA
AGCTAGCTCGAAGGGCACTGGTAGCTGAATCAGTGGACTTGTTTT------------TACAGAGCGATGCCCTACACTGT
AGAGCTCGTGCCATAATTTTTTCTTTTTTTTAGAACGAAGGCTCAAGGAGAGCCCAACTTTGAATTAACAAAGCCATCAA
CCGGCCAGGGATTACACAAGGCCACCAATACAACCAACGGAAAACAGAAAGGAAAATAAACTGCAGGTACACGGTGATGC
CGAAGCAGCTTACAAGCACCAAAGACTACATGCCCTATAGAAGTAAACAGAGAAGCACTAGCATGTAGTCAACGGAGTCC
TCCAAGTGGACTATAGACAGTAGGACAAACAGAGGGGAGCTTCGGGCAGCCATTGCCCAACGTCGATGGACCGAGCCCTC
ATCTACCCTCGAAGGTGCACATCGAAAACCAAGCCGCTCCTCTCCAAATCCGGAGGGGACCCCTGCCCCTCGCCTTGGCT
CGAAAGGCGCCGGACCGCCGGAAGATGGAATTGCCCTCCCTAGAGCAAGGAAAGGGCATGATTCTGTGCACCAAGGAGAT
ACTCAGCTCGACACGCCGCTGCACGAAGGGAACCAGAAGAGTCCACACCGCAGCCCACTGCTACAAGCATGAAGAGGAAA
AACTGCACAATGGAGCTGTCACTGAACAAACAAACAGCAAGGAGAAATGGAGCCTCCATAACTGGATCAGATACAAAGCA
GCATGCTCCAAATCCCTCGCCGAAGACGCAGCCACCCAGCCACCACCGCCCAGCACCACAGCACACTCCCACCTTGCCCA
AGCCGGCACCTTCAAGAAGGAGGCGGCGCACGCTGCACCGTTGTCGACCTGTCTCGGCAAGACATGGGATTTCTCCCGGG
CATGGAGCGGGAGGGAGAGGGCACGAAACTCGACGGCGCCTCCAAGGAGGGGAGCGGCACCGGCCGGTGTCGCCGCCGTC
GTGGCTAGAGCACCCCAGCCAAGGATTTCTCCCGATTCGAACCGCATCTCCGGGCAGCCCAACGCCGGATCCGGCCGCCA
GAGGCTACCGACGACCAGATCCGACGGGGCAGAGTGCTGCGTGGGGGAAGGGGCCGCCTTCAGATCCAGCCGCGGGCGAG
GGGAGCGCCGCACCCGCCGCGACCGGCGACAACTCCCGCCGTCCCTCGCCACCCTCGCGGCCAAGGGAACGGAGGGTCAC
CACCTGCGGCGCCGCTTGCAGGGAGACAGCGCCACCTCGCCACCCGAGGCCGCCGCCTCGGCGTCCGGAGCCCTCCGGTC
GGGAGCAGCAAATCCTCGCCGCCGCCGTCCTTGACGACCCCGCGGGCGGCGCCGGAGATCCCCTCGGGCGGCGGCGAGGG
GGGAGGGAGGAGGCGGGAGGGGAGGTTCGGCGGCTAGGGTTCGGCGCCGCCCGAGTCGCCCCAAGCGGAGCGACGCGGGG
GCTTACCTCGCCAACTTGAGGTAACCGTGACAATACAGCTGCCAGATCCGCCATAATTTTTTCTTCTCTCAAAAACCGTG
TTTCTTC------AGCCATCGGTGATGATGTGGTACCTTTTTGACCAATATGGCAACGATAACATAGTGGAAGACCTTAG
AGTATCTCTAGCTGAACCCC------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------TACAAGGGCTTAATTC
GTTAAAAGATCTCCTTTTGAGGAGTTAAGCACTTAAGCAACAGCTAGCCAAACTTCTATTTGGTTTAGCTGCTAAAAAAT
CTGAGGAGAACCCGCCGTCGGCTCTGAAATTTAAGCGGCCGAAAGAAGCTCCCGGCAAAAGATTCCTTTCGAACGGGCGC
AAAAGATCACTGCTGAGCTTTTTTTCGTCCAAAACCGAAGTGGCGGACGACCATGATGCAGTAGAGCACTCGC-GAGGAG
TTATCCAACGCAGGAATCGCGGTCACACCAGCGAAATTCCAAAAACCTGGAGTTCGACGACGGCGAGCTTGGTCAGCGAC
CGGCGAGCACGGCTTGGAGGAGAATCTTCCTCCTCCTCGGAGCCTGCAGGCC--------ATCCCCCGATCCACCGTCCA
CCCGCAGCCTCGGCGTCGCCTCAACGCCGCTGGCGGAAGCACATGTTGTCCT----------------------------
--------------------------------------------------------------------------------
----------------------------------------------------GTATTTCATTTTGTGTCATCTATTCGCA
CATGTCATGAATG--TTGCATTTGTCCATGCAG--------------TTTTTTTGGGTGCAAATTCTTGCAGAAAGTCAC
TGAGAGGTTGAACAAGCAAGGTGTCATTTATAAACCAATGAAGGCAGAAATTTCTGGCATTGATGTT
>chr1D_548
--------------------------------------------------------------------------------
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-----------------AGGTGGGATGATTTGGTGTTGTTCAAAGAAATGCTTCAAATTCGTTTGGTTTGGGTTCGACCC
CGAT----AGCCTAAGTTCTGTGTGACGGACTAACGGTTTCCCACGCCGTGTGTGATGTGTTTTTTTTTT----GCCGTG
TGCGATGCAAAAATGTGCACTAGTGTGATAAATGCATGGGCATGGGCATGGGCCTTACTATTAGGCTGATCATAGTGGGG
AGTAAATTAGACTAGTGTCATGCATATGACACTAGTCTAAGTTACTACCTTCCTTCATAATGCAAAATAACATAATATTA
GTATCATAGATGGCTTCATTTATTACCTCGTAGACTCATCTTGTCTTGGAAAGCGCTATGTTACAGTAAGTACAATAGTA
GTGTCATGCATAATAACATAATAGTAGTGTCATGCATAATAACATAATATTATGTTACCACCTCTCATTAATTACTTGCC
ACATAAGAGCAAGTACAATAGAGCCGAGTCAGCGGACTATAAGGAATAAACTAGTATATTTCTGCTTAGTTAGAGGAAAG
AGAAGAGGAGAGAGAAAGTAAGCTGGCTCTTCGTGAAGAGCCAGCTCTAGCACGTCCTCCTAGGCACTTTGTGAGAATGA
AAGGTGAGGCACATAATAAAAAAATAGTACACTCTTTTGATCTACTATTGTACATGTTGGTTATAAGATGGACTGTAGAT
GACATGGCACTGGCTTATAGCCAGCAGCTGGCTATACTATTAACCATGCTCTAAGCAGAATTTTCACGAAGTGCGCTATG
TTACTAGTTAAGTTACTCCCACTATGACTAAGGCCCTTAGGAGGTCAAGCATTTCTAGGGCAAATTAGTGCACAAATGCT
ACACTCTTTGCGTTTGCTTTGCCCCAGCTAGCACACCACATGCACATGCATGCAGCTCCATGGATGGAATCTCGATTCTC
ATCACACA--ATCATCACACTATAAATACATGGCTCAAGCCCATGGCACT-----TTGCATCCATCACAACAAGGAAAAG
AAAAGAAGCCG--CGCGCGCGCGCTTACACGCTACATACACACACATTGTTTGCTAGCTACAACCTAGACAGATGGCGAC
AATGGCGGTTAAGGCATTGGTGGTGGCAATGATGCTGGTTGTGCACTGCTTCGACGTAGGGCTTGGTGCTGGAGGCGATG
GCCTGTGCCTCGGCTCGCCCGACTATGGCGACGCTCTGGCCAAGGCCATCCTGTTCTTCGAGGGGCAGCGGTCGGGACGG
CTGCCGGCTAACCAGAGAGCCAGGTGGCGCGGCAACTCTGCGCTCGCCGACGGCCGACCTGAAAACGTATGGTCTCTTAT
AGCTAACTTGTGATCATGAGCCACTGCTGCTCTCCT---CGTTCGAATCTGTGTGTTTA--ATCTAGATACTGTGAGTTT
TCTCTTCAGCACATGCAAAACAAAAGCGGACCATATTTTGGTACAC--TATGGAGCCAGTGTGAAATATATACTTGAGGC
AATTAATGAACAGTTTGTCTAATTCACATCTAAATGTTTTTTAAGGATGTCACATCTAAGCTTTCACAAGTATATAATGT
AGCAACAAAAAACAAAAAAATTAGGACAAAAAATAGATCATAAACAGAGTGGACATCAGTTTAGATGTGACATAACTATG
TCACATCTAGATGTGTCCTAGACAGACCCGTTAATGAATGGAATAGGAGCCAGAAGAATGAAAGAAAAAACATGAAATTT
GAT-TAGTGATAT---------------ATGCCGATCACAGGTTAACCTGACGGGTGGGTACTACGACGCCGGCGACAAC
GTCAAGTTCGGGTTCCCGATGGCCTTCACGGTGACCCTGCTGAGCTGGAGCGCCATCGAGTACCGCGGCGACGTGGCGGC
GGCGGGGCAGCTGGGCAACCTCCGTGCCGCCATCCATTGGGGCGCCGATTTCCTGCTCCGCGCACACACATCTCCCACCA
CCCTCTATACCCAGGTTTGGTAACTGGTTTACTACCAATTCAACGTTTATAAAGAACAAGCACATCAATGAAACTATGAG
ACGGACTAGATTTATTTTGTTGTTCGTTCATCGTTGTTGCCTTCACAAGGTGGGGGACGGGAACGCGGACCACGGGTGCT
GGGAGCGGCCGGAGGACATGGACACGCCGAGGACTCTGTACAAGATCACCGGGGACTCGCCTGGGTCGGAGGCAGCCGGC
GAGGCGGCTGCGGCGCTCGCAGCGGCCTACCTAGTGCTCAAGGAAGACGGTGACAAGGCGTTCGCGTCGCGGCTCCTGGC
CGCGTCCAAATCGGTACGCACGAAGCATGCATGTGGTGTTGTTTCTCGTTAGTTAAATGTAA---AAGAATCACGATAAC
GGTTTGTGTTTTTAGCTTGGGTGTGTCTAAGTCTTAGTCGACTGAGACTTAACCAAGTCTCACTTAAGTGATATAGTATA
TGAGAAGAAAAAGAAAAAAATTGAAAAGAATTTTTTATACGAATTTTAATGCAAGATCAATGGAATATAACATCGAATGA
GACATAACGAAGTCTAAGTCGACCTAGCAAAACTGTTTTGGCTTTGGTCAGCTCTTTGAGTTGGCCAACAATTACAGGGG
GTCCTTCCAGTCGTCCTGCCCCTTCTACTGCTCCTACTCCGGCTTTCAGGTAAGTAGTAGAGAAACAAAATCCACTCACT
GCTGGGTCGATCTATTGGTTGGTTGACAAACAA---------AATCTAATCAATCTAAGTACCGTAGGATGAGCTGCTCT
GGGCCTCGGCGTGGCTCTACCGGGCGACCAAGGACGGCAAGTACCTCAACTTCCTCCGTGACAACCAGGGGTCCAGCAAC
CCTGTCAACGAGTTCAGCTGGGACAACAAGCAGGTTGGAGCCCAGATGCTCGCAACACAGGTGGGTCGCACATTGATTC-
--TGCCTCCATGGGTACAGTCATTCAGCCAAAGTCCGT-ACCGCGCGCTGTACCATATTGATTTCAGGAGTTTTTTGTTT
TTTGCACGGTGATTTCAGGAGTTTTTTGTTTTTTGCACGGTGATTTCAGGAGTATTTGAAAGGAAGGAGAGAGCTAGCAA
GGTACAAGACCAACTTGGACTCCTTCGTCTGCGCCCTCATGCCTGACAGCGGCAATACGCAGATACGCACAACTCGTGGT
ATATTACGT---ACCTCCCTGCCTCAGCCTGAATTCTGAAGAACA----GCCCAAAACCTCTCATCTTCTCCACATGTGG
TATGTGCT----GCAGGAGCGCTTCTCTTCACGCGCGATTCGGTGAACATGCAGTACACCACCACCGCGGCCCTCGTCCT
CTCCATCTACTCCAAGACGCTCCAGTCCTGGGGCGTCTCCGACGGAGTCCGCTGCAGCGCCGCAAGCTTCTCCCCGGATC
AGATCGCCTCGTTCGCCGCATCACAGGTCGGCCAACATCTTCTCGCCTGACCGTGATCGCACCCGTCATTCAGTATCCGA
TCCATCCGATCCGACAACGCATCATTGCATCCGGTGTTGTTGTTGCAGGTCGACTATATCCTGGGGAGCAACCCGATGGG
CATGTCGTACATGGTGGGCTTCGGCGGCGCGTTCCCGCGGCGCATCCACCACCGCGCCGCGTCCATCCCCTCCATCAAGG
TCCTCAGCAGGAGGGTCCCCTGCAACGAGGGCTTCTCCTCGTGGCTGCCCACGAGCGACCCCAACCCGAACGTCCATGTC
GGCGCCATCGTCGGAGGGCCCGACGAGAACGACCAGTTCGGCGACAACAGGGGGGACTCGGCGCACTCCGAGCCGGCCAC
CTACATCAACGCCGCCTTTGTGGGTGCCTGTGCGGCTGCCATGGGGCAGAGCCAGAAACCTGCGTCGCCGACTTTAGCGT
CTTACTAGTAGTAGACCACAAGGATATGCGCACTCGTTGTTACACGCAACGCAAGCAAGATACTACTGG-----------
--------------------TACTACTATGCTCTGTTCCTAAATTTCCACGTGTGTAATGTATTTGTAACATATGCATTC
GCTACCAGAACTCTGAACCCGTTCGTGATCGTCGTATTATAGAAGTTTATAATGTAATAACAAGACATAAAAATACAGTA
CCAAGTTTATATCAGCTCAGG-----------------------------------------------------------
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-------------------------------------------------------------------ATTCTTCTCCCCA
AGTTTGCAACTCTCTTCCTCTCCCCGATTATAA-CAGACTTAGGCCCTCCACTAT-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------G---AC
CAAAATCAATGCGAAATTCATTTTCTAGTCTTTGGCCACCGATGCCCTACATAGCCCAACCTTGTGTGCTACCTGTGTGA
GTGCGGTGTAAACCTTTGTTGGATCTTGTGGGTGAAAGCGGGTGAAAGCGGTGAAAGCGGGTGAAAGCCTTTTTCGGTAC
ATAGCCCAGCCGGAGCAAAAAAAAAATAAAAAAAATCTGGGCATCGGAGCAAGTGGGTGCTCCGATGCCAAATTCCTCAA
-GCTAACTCGAAGGGCACTGGCAGCTGGATCAGTGGACTTGTTTATCAATTCCTTTATACAGAGCGGTGCCCTCCACTGT
GGAGCTCATGCCATAATTTTT-----------------------------------------------------------
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----TTCTTCTTAAGGCATCGGTGATGATGCGGCACCTTTTTGACCAATATGGCACCGATAACATAGTGGAAGGCCTTAG
AGTATCTCTAGCCGAATCCCTTCAGGGTGAAAACCTATGATCTTGAATCGGGCGACGACGGCGTTTGTGCACTGTTTTCT
TCTTGAAGGCGTCGCTTTTGGAGACCGTTTATGTTTTCCAGGTGTTGTCTCTGGGGGTGGTTTGTGTGTTGTTGCTGAGA
GGAGTTGATCACTATGGCAAGACCTTTGTTTTTTGTTTTTTGTTTTACTTTTTGGGCTGTGTGCATCCTGGATGTCTTCG
TGACATCTTGTTGGTGCAGAGGCTGAGTGTAATTGGTATCTTCGCGATATTAAATATATTCCCTTTAAAAAAAGACAGTG
GACTTGTTTATCAATTACTAATTCATTTATATGGAGCGGTGCCATACATTTTTCTTTGGGCATTGGTGATGATGTGGCAC
ATTTTTGACCAATATAGCATCGATAACATAGTGAAAGGCCTTAGAGCATCTCTAGCCGAACCCATACAAAGGCTTAATTC
CTTAAAAGATCCCCTTTTGAGGAG--------TTAAGCAACAGCTAGCCAAACTTCTATTCGGTTTAGCTGCTCAAAAAT
CTGAGGAGAACCCGCCGTTGGCTCTAAAATTTA-GCGGCCGAAAGAAGCTCTCGGCAAAAGATTCCTTTCGAACGGGCAC
AAAAGGTCACTGCTAACCTTTTTT-CGTCCAAAACCAAACTGGCGAACGACCATGATGCCGTAGAGCACTCGCGGAGGAG
TTAGCCGATGCAAGAATTGCGGTCACGCCAGCGAAATTCCGAAAACCCGGAGTTCGGCGGCGGCGAGCTTGGTCAGCGCC
CGGCGAGCACGGCTTGGAGGAGAATCTTCCTCCTC---GGAGCTTGCAGGCCATCCCCCGATCC--------ACCGTCCA
CCTGCAGCCTCGGTGTCGCCTCAACGCCGCTGGCGGAAGCATGTGTTGTCTTGTAATCCCTCCGTTCCTAAATATAAGTC
TTTGTAGAGATTTTACTTTGGACCACATACGGATGTATCTAGATGCAATTTAGAGTATATATTCACTCATTTTGCTCCGT
ATGTAGTCCATAGTGGAATCTTTCCAAAGACTTATATTTAGGAACGGAGGGAGTATTTCATTTTGTGTCATCTATTTGCA
CATGTCATGAATGTGTTGCATTTGTCCTTGCAGAAAGTTTTTTATTTTTTTATTTTTTGCGAATTCTTGCATAAAGTCAT
TGAGAGGTTGAACAAGCAAGGTGTCATTTACAAACCAATTAAGGCAG-AATTTCTGGCATTGATGTT
>SNPs
---------S--------S---------S-----------------------S------S------------S--S-S--
----------------S--------S-------------S----S-----------------------S----S------
----S--S--S--------S--------------------------------S--SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS----------------S-----------------------------S----S-------------------------
-S-S------------SS------------------------------------S-----S-S-----S-----------
------S-----S-------------S-----------------------------------------------------
----SSSS--S-----------------S--------------------SSS---SSS-S-------------SS--S--
------------------------------------------------S-------------------------------
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---------------------------------------------S----------------------------------
--------------------------------------------------------------------------------
--S---SSSSSS------------------------S-S-S-----------S-------S----------S--------
--------------SS--------------------------------------------------------------S-
-------------------------------------S--------------------------------------S---
-------------------S---S--------------------------------------------------------
------------------------------S-----------------S---S---------------------------
---------------------S------------S-----------SS------S-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------S---------
--SS------------S--------S-----S------------------------------------------------
-------------------------------------------------------------S---S--------------
----------------------S----------------------S-----------------S----------------
----------------S----SSS------S---------S------S-S-S-S--------------------S-----
---------------S--SS-S----------------------------------------------------------
----------------------------------S---------S-----------------------------------
--------------------S-----------------------------S-----------------------------
-----------------------------------S--------------------------SSS---------------
---------------SSS--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------S------------------------
--S--------------------------------------------------------------------SSSS-SSSS
SS-S-S-S----S-------------SS--------S-S----SS---------S-SS----------------------
-----------------------------------------------------------------------------SS-
--------------------------------------------------------------------------------
-SS---------S----------------S---------------SSSS--------------------------S----
--S-----SSSS-----------S--------S--------S--------------------------------------
----------S-----------S----------------------S-----------------S----------------
-------------------S------------------------------------------------------------
--------------------------------------------------------------------------------
--------------S---------------S-----------------------------S-------------------
-S----S-S---S---------------------------S-----------S---------------------------
--------------------------------------------------------------------------------
------------------S-----S--------------------------------S-----------------S--S-
------------------------------------S-SSS---------------------------------------
----------------------------------------------S---------------S----S------------
------------------------------------S-------------------------------------------
----------------S---------------------------------------------------------------
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------------S-----------S--S-----S---------------------SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------
-----S-----S---------------------------S-----------S-S-S-----------------S------
---SS---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------S-------S---------S---------------S---S---------------
------S---S---------------------------------------------------------------------
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--------------------S-----------------------------------------------------------
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-------------------------------------------------S------------------------S-S---
------------------------------S-------------S-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------S----------S------------------------------------
-------------------------------------------------------------------
>forward_403
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---------------------------------------------------------------CTTTGAAACCAAACGCC
CCC-----------------------------------------------------------------------------
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>reverse_3519
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------------------------------------------------------------------------------AC
GATTCATGCATGCCTCCA--------------------------------------------------------------
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>forward_2851
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-------------------------------TAGTGCTCAAGGAAGACGGC-----------------------------
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>reverse_6341
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--------------------GCAAAGCTTGACTTTCGGCA----------------------------------------
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-------------------------------------------------------------------
