Multiple sequence alignment - TraesCS1A01G088600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G088600 chr1A 100.000 4199 0 0 1 4199 77069564 77073762 0.000000e+00 7755.0
1 TraesCS1A01G088600 chr1A 98.936 94 1 0 4106 4199 13709806 13709713 7.220000e-38 169.0
2 TraesCS1A01G088600 chr1A 98.936 94 1 0 4106 4199 358543553 358543460 7.220000e-38 169.0
3 TraesCS1A01G088600 chr1A 97.872 94 2 0 4106 4199 347647549 347647456 3.360000e-36 163.0
4 TraesCS1A01G088600 chr1D 95.044 3834 127 32 1 3799 76450666 76454471 0.000000e+00 5969.0
5 TraesCS1A01G088600 chr1D 96.078 51 2 0 3840 3890 76454700 76454750 2.690000e-12 84.2
6 TraesCS1A01G088600 chr1B 92.859 3851 203 29 1 3824 119765064 119768869 0.000000e+00 5522.0
7 TraesCS1A01G088600 chr1B 92.308 52 1 1 3847 3895 119768920 119768971 2.090000e-08 71.3
8 TraesCS1A01G088600 chrUn 98.936 94 1 0 4106 4199 1525691 1525598 7.220000e-38 169.0
9 TraesCS1A01G088600 chrUn 98.936 94 1 0 4106 4199 71293458 71293551 7.220000e-38 169.0
10 TraesCS1A01G088600 chr6A 98.936 94 1 0 4106 4199 510214468 510214561 7.220000e-38 169.0
11 TraesCS1A01G088600 chr4A 96.117 103 4 0 4097 4199 13331159 13331261 7.220000e-38 169.0
12 TraesCS1A01G088600 chr2D 95.238 105 5 0 4093 4197 84746768 84746664 2.600000e-37 167.0
13 TraesCS1A01G088600 chr2A 92.793 111 5 2 4089 4199 35396407 35396300 1.560000e-34 158.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G088600 chr1A 77069564 77073762 4198 False 7755.00 7755 100.0000 1 4199 1 chr1A.!!$F1 4198
1 TraesCS1A01G088600 chr1D 76450666 76454750 4084 False 3026.60 5969 95.5610 1 3890 2 chr1D.!!$F1 3889
2 TraesCS1A01G088600 chr1B 119765064 119768971 3907 False 2796.65 5522 92.5835 1 3895 2 chr1B.!!$F1 3894

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
99 108 0.026803 GCTTCGTCGCATTCCACATC 59.973 55.0 0.00 0.00 0.00 3.06 F
970 1017 0.107508 GCACTATTGCTCTGCAGGGA 60.108 55.0 20.53 4.87 46.17 4.20 F
989 1036 0.389166 ACTTCTTCAGCTTCTCCGCG 60.389 55.0 0.00 0.00 34.40 6.46 F
2164 2216 0.610174 AACTGAGAGATGCGCTTCCA 59.390 50.0 18.70 9.59 0.00 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1023 1070 0.859232 CCGAAACGATCATAAGGCGG 59.141 55.000 0.00 0.0 0.00 6.13 R
2485 2540 2.224769 GGTCCAGATCCCAGTTCAAACA 60.225 50.000 0.00 0.0 0.00 2.83 R
2658 2714 2.591923 TGGCCTTGTTTGTCAGCATAA 58.408 42.857 3.32 0.0 0.00 1.90 R
4142 4399 0.030638 GCAAAGCTTGACTTTCGGCA 59.969 50.000 0.00 0.0 45.78 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.023673 TGTTGTGCTCTGTCAAAAGGG 58.976 47.619 0.00 0.00 0.00 3.95
48 49 1.215655 CCTCGCGGATTTCATCGACC 61.216 60.000 6.13 0.00 0.00 4.79
87 96 1.779569 TCTCAAACGGAAGCTTCGTC 58.220 50.000 19.91 6.51 40.18 4.20
99 108 0.026803 GCTTCGTCGCATTCCACATC 59.973 55.000 0.00 0.00 0.00 3.06
125 134 1.913778 TCCGCACTCCACTTGTACTA 58.086 50.000 0.00 0.00 0.00 1.82
126 135 1.542915 TCCGCACTCCACTTGTACTAC 59.457 52.381 0.00 0.00 0.00 2.73
127 136 1.544691 CCGCACTCCACTTGTACTACT 59.455 52.381 0.00 0.00 0.00 2.57
134 143 1.134560 CCACTTGTACTACTCGGCTCC 59.865 57.143 0.00 0.00 0.00 4.70
170 179 1.658717 CGTCGTCATCCGCATCTCC 60.659 63.158 0.00 0.00 36.19 3.71
298 339 0.606401 AACTCATCCGCCACCTTGTG 60.606 55.000 0.00 0.00 0.00 3.33
311 352 0.390472 CCTTGTGCGTTCCTCCTCTC 60.390 60.000 0.00 0.00 0.00 3.20
317 358 2.122167 CGTTCCTCCTCTCCCTCCG 61.122 68.421 0.00 0.00 0.00 4.63
318 359 1.758906 GTTCCTCCTCTCCCTCCGG 60.759 68.421 0.00 0.00 0.00 5.14
319 360 2.246874 TTCCTCCTCTCCCTCCGGT 61.247 63.158 0.00 0.00 0.00 5.28
320 361 2.123640 CCTCCTCTCCCTCCGGTC 60.124 72.222 0.00 0.00 0.00 4.79
321 362 2.123640 CTCCTCTCCCTCCGGTCC 60.124 72.222 0.00 0.00 0.00 4.46
322 363 2.617538 TCCTCTCCCTCCGGTCCT 60.618 66.667 0.00 0.00 0.00 3.85
323 364 2.123640 CCTCTCCCTCCGGTCCTC 60.124 72.222 0.00 0.00 0.00 3.71
324 365 2.123640 CTCTCCCTCCGGTCCTCC 60.124 72.222 0.00 0.00 0.00 4.30
325 366 3.742248 CTCTCCCTCCGGTCCTCCC 62.742 73.684 0.00 0.00 0.00 4.30
326 367 3.756783 CTCCCTCCGGTCCTCCCT 61.757 72.222 0.00 0.00 0.00 4.20
430 471 0.464373 TCCCTGCGCCAAATCTGATC 60.464 55.000 4.18 0.00 0.00 2.92
434 475 0.939419 TGCGCCAAATCTGATCGATG 59.061 50.000 0.54 0.00 31.20 3.84
449 490 1.060937 GATGTCAATCGTGCCGTGC 59.939 57.895 0.00 0.00 0.00 5.34
519 560 6.592798 TTTGTTCTTACCAGTAAAGTCACG 57.407 37.500 0.00 0.00 0.00 4.35
579 621 1.599576 GGTCCCCTGTCTTGCTCTC 59.400 63.158 0.00 0.00 0.00 3.20
622 664 4.226761 CCGTTTCTTGTTTGCCATAGTTC 58.773 43.478 0.00 0.00 0.00 3.01
806 852 7.386848 AGCTTCTCGTGTGCTATAGTTTAAAAA 59.613 33.333 0.84 0.00 35.05 1.94
871 918 0.460987 CCAGCAGATGACCGAGGAAC 60.461 60.000 0.00 0.00 0.00 3.62
939 986 2.412065 GCAGACGCATCAAACTTCTCAC 60.412 50.000 0.00 0.00 38.36 3.51
970 1017 0.107508 GCACTATTGCTCTGCAGGGA 60.108 55.000 20.53 4.87 46.17 4.20
985 1032 2.934801 GCAGGGACTTCTTCAGCTTCTC 60.935 54.545 0.00 0.00 34.60 2.87
989 1036 0.389166 ACTTCTTCAGCTTCTCCGCG 60.389 55.000 0.00 0.00 34.40 6.46
1101 1148 3.493176 CCTTTGGTTTGCCCAGAAAGAAG 60.493 47.826 0.00 0.00 46.31 2.85
1445 1492 2.769095 GGAGACAGCTAAGTTCCCTCAT 59.231 50.000 0.00 0.00 0.00 2.90
1494 1541 2.708861 TGCCTGTCTAGTTTTTCCTGGA 59.291 45.455 0.00 0.00 0.00 3.86
1901 1952 0.741915 GTTTGAGCGGAAAACCACCA 59.258 50.000 0.00 0.00 32.49 4.17
2011 2062 3.004734 GCAGTTGCTTGGTTTCAGTGTAT 59.995 43.478 0.00 0.00 38.21 2.29
2164 2216 0.610174 AACTGAGAGATGCGCTTCCA 59.390 50.000 18.70 9.59 0.00 3.53
2419 2471 7.600752 CCCGTTTAATGTTTGTTCATACCATTT 59.399 33.333 0.00 0.00 0.00 2.32
2420 2472 8.983724 CCGTTTAATGTTTGTTCATACCATTTT 58.016 29.630 0.00 0.00 0.00 1.82
2485 2540 3.301794 TTACTGATCCCAATGCTGCAT 57.698 42.857 9.81 9.81 0.00 3.96
2489 2544 2.167693 CTGATCCCAATGCTGCATGTTT 59.832 45.455 17.00 0.00 0.00 2.83
2658 2714 3.442625 CCATTGATGCACTGAGTTCATGT 59.557 43.478 1.70 0.00 0.00 3.21
2663 2719 4.095334 TGATGCACTGAGTTCATGTTATGC 59.905 41.667 1.70 0.00 0.00 3.14
2779 2838 5.190132 TGGGAAATGGAAGGTATACTCGAAA 59.810 40.000 2.25 0.00 0.00 3.46
2780 2839 6.117488 GGGAAATGGAAGGTATACTCGAAAA 58.883 40.000 2.25 0.00 0.00 2.29
2781 2840 6.600427 GGGAAATGGAAGGTATACTCGAAAAA 59.400 38.462 2.25 0.00 0.00 1.94
2958 3017 0.250038 TGCTTCTGTCACACTCAGGC 60.250 55.000 0.00 0.00 34.15 4.85
3015 3074 5.124936 GCTGAATACAAAGGTAAATTCCCGT 59.875 40.000 0.00 0.00 32.19 5.28
3017 3076 7.148355 TGAATACAAAGGTAAATTCCCGTTC 57.852 36.000 0.00 0.00 32.19 3.95
3018 3077 6.151480 TGAATACAAAGGTAAATTCCCGTTCC 59.849 38.462 0.00 0.00 32.19 3.62
3115 3174 0.037790 GAACTCGCAGCCTGAGACTT 60.038 55.000 0.00 0.00 36.93 3.01
3251 3310 2.158593 CCCTCTCAGAGTCGGGATAGAA 60.159 54.545 17.84 0.00 39.08 2.10
3253 3312 4.263550 CCCTCTCAGAGTCGGGATAGAATA 60.264 50.000 17.84 0.00 39.08 1.75
3266 3325 6.704493 TCGGGATAGAATAACAAATGTACTGC 59.296 38.462 0.00 0.00 0.00 4.40
3280 3339 8.413229 ACAAATGTACTGCTTCTTGTGTAAATT 58.587 29.630 0.00 0.00 0.00 1.82
3351 3410 5.045359 AGAGGGTCAATCTTCATGTTGATCA 60.045 40.000 8.73 0.00 37.23 2.92
3352 3411 5.573219 AGGGTCAATCTTCATGTTGATCAA 58.427 37.500 3.38 3.38 37.23 2.57
3524 3583 0.895100 TGCCCATGACAGTTGAAGCC 60.895 55.000 0.00 0.00 0.00 4.35
3535 3594 4.890088 ACAGTTGAAGCCGTTAATCTGTA 58.110 39.130 0.00 0.00 33.96 2.74
3541 3600 4.161565 TGAAGCCGTTAATCTGTACCTGAT 59.838 41.667 0.00 0.00 0.00 2.90
3614 3673 1.540267 ACGACCCTTGTCTCTCTCAG 58.460 55.000 0.00 0.00 39.47 3.35
3806 4032 7.424803 TGACACAAAATGAAATACAGGACAAG 58.575 34.615 0.00 0.00 0.00 3.16
3820 4046 3.777925 CAAGACGTGCTTCCGCCG 61.778 66.667 0.00 0.00 33.60 6.46
3845 4099 3.661648 GGGTGGGCAGTGGATGGT 61.662 66.667 0.00 0.00 0.00 3.55
3890 4147 4.749310 CTCCAAGCCGTGCTCGCT 62.749 66.667 1.89 1.02 38.25 4.93
3897 4154 2.664851 CCGTGCTCGCTGGTCAAA 60.665 61.111 1.89 0.00 35.54 2.69
3898 4155 2.250939 CCGTGCTCGCTGGTCAAAA 61.251 57.895 1.89 0.00 35.54 2.44
3899 4156 1.646540 CGTGCTCGCTGGTCAAAAA 59.353 52.632 0.00 0.00 0.00 1.94
3900 4157 0.384725 CGTGCTCGCTGGTCAAAAAG 60.385 55.000 0.00 0.00 0.00 2.27
3901 4158 0.040067 GTGCTCGCTGGTCAAAAAGG 60.040 55.000 0.00 0.00 0.00 3.11
3902 4159 0.465460 TGCTCGCTGGTCAAAAAGGT 60.465 50.000 0.00 0.00 0.00 3.50
3903 4160 0.040067 GCTCGCTGGTCAAAAAGGTG 60.040 55.000 0.00 0.00 0.00 4.00
3904 4161 0.040067 CTCGCTGGTCAAAAAGGTGC 60.040 55.000 0.00 0.00 0.00 5.01
3905 4162 1.007387 CGCTGGTCAAAAAGGTGCC 60.007 57.895 0.00 0.00 0.00 5.01
3906 4163 1.733402 CGCTGGTCAAAAAGGTGCCA 61.733 55.000 0.00 0.00 0.00 4.92
3907 4164 0.249447 GCTGGTCAAAAAGGTGCCAC 60.249 55.000 0.00 0.00 0.00 5.01
3908 4165 1.110442 CTGGTCAAAAAGGTGCCACA 58.890 50.000 0.00 0.00 0.00 4.17
3909 4166 1.688197 CTGGTCAAAAAGGTGCCACAT 59.312 47.619 0.00 0.00 0.00 3.21
3910 4167 1.686052 TGGTCAAAAAGGTGCCACATC 59.314 47.619 0.00 0.00 0.00 3.06
3911 4168 1.686052 GGTCAAAAAGGTGCCACATCA 59.314 47.619 0.00 0.00 0.00 3.07
3912 4169 2.299867 GGTCAAAAAGGTGCCACATCAT 59.700 45.455 0.00 0.00 0.00 2.45
3913 4170 3.578688 GTCAAAAAGGTGCCACATCATC 58.421 45.455 0.00 0.00 0.00 2.92
3914 4171 3.005684 GTCAAAAAGGTGCCACATCATCA 59.994 43.478 0.00 0.00 0.00 3.07
3915 4172 3.005684 TCAAAAAGGTGCCACATCATCAC 59.994 43.478 0.00 0.00 0.00 3.06
3916 4173 2.592102 AAAGGTGCCACATCATCACT 57.408 45.000 0.00 0.00 0.00 3.41
3917 4174 1.830279 AAGGTGCCACATCATCACTG 58.170 50.000 0.00 0.00 0.00 3.66
3918 4175 0.986527 AGGTGCCACATCATCACTGA 59.013 50.000 0.00 0.00 35.41 3.41
3919 4176 1.562942 AGGTGCCACATCATCACTGAT 59.437 47.619 0.00 0.00 43.02 2.90
3949 4206 5.391312 AAAAATTATGACACCAGCTCCAC 57.609 39.130 0.00 0.00 0.00 4.02
3950 4207 3.719268 AATTATGACACCAGCTCCACA 57.281 42.857 0.00 0.00 0.00 4.17
3951 4208 2.768253 TTATGACACCAGCTCCACAG 57.232 50.000 0.00 0.00 0.00 3.66
3960 4217 4.008933 GCTCCACAGCCACTCCGT 62.009 66.667 0.00 0.00 40.14 4.69
3961 4218 2.646175 GCTCCACAGCCACTCCGTA 61.646 63.158 0.00 0.00 40.14 4.02
3962 4219 1.961180 GCTCCACAGCCACTCCGTAT 61.961 60.000 0.00 0.00 40.14 3.06
3963 4220 1.399714 CTCCACAGCCACTCCGTATA 58.600 55.000 0.00 0.00 0.00 1.47
3964 4221 1.754803 CTCCACAGCCACTCCGTATAA 59.245 52.381 0.00 0.00 0.00 0.98
3965 4222 2.167693 CTCCACAGCCACTCCGTATAAA 59.832 50.000 0.00 0.00 0.00 1.40
3966 4223 2.167693 TCCACAGCCACTCCGTATAAAG 59.832 50.000 0.00 0.00 0.00 1.85
3967 4224 2.550978 CACAGCCACTCCGTATAAAGG 58.449 52.381 0.00 0.00 0.00 3.11
3968 4225 2.167693 CACAGCCACTCCGTATAAAGGA 59.832 50.000 0.00 0.00 36.20 3.36
3969 4226 2.835764 ACAGCCACTCCGTATAAAGGAA 59.164 45.455 0.57 0.00 37.32 3.36
3970 4227 3.454812 ACAGCCACTCCGTATAAAGGAAT 59.545 43.478 0.57 0.00 37.32 3.01
3971 4228 4.080526 ACAGCCACTCCGTATAAAGGAATT 60.081 41.667 0.57 0.00 37.32 2.17
3972 4229 4.273480 CAGCCACTCCGTATAAAGGAATTG 59.727 45.833 0.57 1.51 37.32 2.32
3973 4230 4.163458 AGCCACTCCGTATAAAGGAATTGA 59.837 41.667 0.57 0.00 37.32 2.57
3974 4231 4.272748 GCCACTCCGTATAAAGGAATTGAC 59.727 45.833 0.57 0.00 37.32 3.18
3975 4232 5.424757 CCACTCCGTATAAAGGAATTGACA 58.575 41.667 0.57 0.00 37.32 3.58
3976 4233 5.878116 CCACTCCGTATAAAGGAATTGACAA 59.122 40.000 0.00 0.00 37.32 3.18
3977 4234 6.373216 CCACTCCGTATAAAGGAATTGACAAA 59.627 38.462 0.00 0.00 37.32 2.83
3978 4235 7.241376 CACTCCGTATAAAGGAATTGACAAAC 58.759 38.462 0.00 0.00 37.32 2.93
3979 4236 6.938030 ACTCCGTATAAAGGAATTGACAAACA 59.062 34.615 0.00 0.00 37.32 2.83
3980 4237 7.446013 ACTCCGTATAAAGGAATTGACAAACAA 59.554 33.333 0.00 0.00 37.32 2.83
3981 4238 7.812648 TCCGTATAAAGGAATTGACAAACAAG 58.187 34.615 0.00 0.00 35.96 3.16
3982 4239 7.446013 TCCGTATAAAGGAATTGACAAACAAGT 59.554 33.333 0.00 0.00 39.54 3.16
3992 4249 8.316640 GAATTGACAAACAAGTCTACTGATCT 57.683 34.615 0.00 0.00 46.03 2.75
3993 4250 9.424319 GAATTGACAAACAAGTCTACTGATCTA 57.576 33.333 0.00 0.00 46.03 1.98
3994 4251 8.994429 ATTGACAAACAAGTCTACTGATCTAG 57.006 34.615 0.00 0.00 42.02 2.43
3995 4252 6.390721 TGACAAACAAGTCTACTGATCTAGC 58.609 40.000 0.00 0.00 39.27 3.42
3996 4253 6.209589 TGACAAACAAGTCTACTGATCTAGCT 59.790 38.462 0.00 0.00 39.27 3.32
3997 4254 6.393990 ACAAACAAGTCTACTGATCTAGCTG 58.606 40.000 0.00 0.00 0.00 4.24
3998 4255 4.647424 ACAAGTCTACTGATCTAGCTGC 57.353 45.455 0.00 0.00 0.00 5.25
3999 4256 3.383185 ACAAGTCTACTGATCTAGCTGCC 59.617 47.826 0.00 0.00 0.00 4.85
4000 4257 3.304911 AGTCTACTGATCTAGCTGCCA 57.695 47.619 0.00 0.00 0.00 4.92
4001 4258 3.221771 AGTCTACTGATCTAGCTGCCAG 58.778 50.000 0.00 0.56 0.00 4.85
4002 4259 2.955660 GTCTACTGATCTAGCTGCCAGT 59.044 50.000 12.04 12.04 41.98 4.00
4003 4260 2.954989 TCTACTGATCTAGCTGCCAGTG 59.045 50.000 15.67 8.18 39.83 3.66
4004 4261 0.177604 ACTGATCTAGCTGCCAGTGC 59.822 55.000 7.54 0.00 38.32 4.40
4005 4262 0.532417 CTGATCTAGCTGCCAGTGCC 60.532 60.000 0.00 0.00 36.33 5.01
4006 4263 1.227793 GATCTAGCTGCCAGTGCCC 60.228 63.158 0.00 0.00 36.33 5.36
4007 4264 1.692042 ATCTAGCTGCCAGTGCCCT 60.692 57.895 0.00 0.00 36.33 5.19
4008 4265 1.277580 ATCTAGCTGCCAGTGCCCTT 61.278 55.000 0.00 0.00 36.33 3.95
4009 4266 1.451028 CTAGCTGCCAGTGCCCTTC 60.451 63.158 0.00 0.00 36.33 3.46
4010 4267 3.315142 TAGCTGCCAGTGCCCTTCG 62.315 63.158 0.00 0.00 36.33 3.79
4011 4268 4.704833 GCTGCCAGTGCCCTTCGA 62.705 66.667 0.00 0.00 36.33 3.71
4012 4269 2.435586 CTGCCAGTGCCCTTCGAG 60.436 66.667 0.00 0.00 36.33 4.04
4013 4270 4.704833 TGCCAGTGCCCTTCGAGC 62.705 66.667 0.00 0.00 36.33 5.03
4014 4271 4.400961 GCCAGTGCCCTTCGAGCT 62.401 66.667 0.00 0.00 0.00 4.09
4015 4272 3.019003 GCCAGTGCCCTTCGAGCTA 62.019 63.158 0.00 0.00 0.00 3.32
4016 4273 1.142748 CCAGTGCCCTTCGAGCTAG 59.857 63.158 0.00 0.00 0.00 3.42
4017 4274 1.520342 CAGTGCCCTTCGAGCTAGC 60.520 63.158 6.62 6.62 0.00 3.42
4018 4275 1.684049 AGTGCCCTTCGAGCTAGCT 60.684 57.895 19.45 19.45 0.00 3.32
4019 4276 1.520342 GTGCCCTTCGAGCTAGCTG 60.520 63.158 24.99 14.56 0.00 4.24
4020 4277 2.587473 GCCCTTCGAGCTAGCTGC 60.587 66.667 24.99 14.58 43.29 5.25
4021 4278 2.107953 CCCTTCGAGCTAGCTGCC 59.892 66.667 24.99 7.77 44.23 4.85
4022 4279 2.107953 CCTTCGAGCTAGCTGCCC 59.892 66.667 24.99 6.94 44.23 5.36
4023 4280 2.725312 CCTTCGAGCTAGCTGCCCA 61.725 63.158 24.99 1.94 44.23 5.36
4024 4281 1.227205 CTTCGAGCTAGCTGCCCAG 60.227 63.158 24.99 8.65 44.23 4.45
4025 4282 1.670949 CTTCGAGCTAGCTGCCCAGA 61.671 60.000 24.99 10.41 44.23 3.86
4026 4283 1.257750 TTCGAGCTAGCTGCCCAGAA 61.258 55.000 24.99 15.56 44.23 3.02
4027 4284 1.219124 CGAGCTAGCTGCCCAGAAA 59.781 57.895 24.99 0.00 44.23 2.52
4028 4285 0.179062 CGAGCTAGCTGCCCAGAAAT 60.179 55.000 24.99 0.00 44.23 2.17
4029 4286 1.745141 CGAGCTAGCTGCCCAGAAATT 60.745 52.381 24.99 0.00 44.23 1.82
4030 4287 1.946081 GAGCTAGCTGCCCAGAAATTC 59.054 52.381 24.99 0.00 44.23 2.17
4031 4288 1.563410 AGCTAGCTGCCCAGAAATTCT 59.437 47.619 18.57 0.00 44.23 2.40
4032 4289 2.025510 AGCTAGCTGCCCAGAAATTCTT 60.026 45.455 18.57 0.00 44.23 2.52
4033 4290 2.757314 GCTAGCTGCCCAGAAATTCTTT 59.243 45.455 7.70 0.00 35.15 2.52
4034 4291 3.194329 GCTAGCTGCCCAGAAATTCTTTT 59.806 43.478 7.70 0.00 35.15 2.27
4035 4292 4.322273 GCTAGCTGCCCAGAAATTCTTTTT 60.322 41.667 7.70 0.00 35.15 1.94
4036 4293 3.999046 AGCTGCCCAGAAATTCTTTTTG 58.001 40.909 0.00 0.00 0.00 2.44
4037 4294 3.069289 GCTGCCCAGAAATTCTTTTTGG 58.931 45.455 0.00 2.94 0.00 3.28
4038 4295 3.069289 CTGCCCAGAAATTCTTTTTGGC 58.931 45.455 12.81 12.81 36.03 4.52
4039 4296 2.705127 TGCCCAGAAATTCTTTTTGGCT 59.295 40.909 17.68 0.00 36.26 4.75
4040 4297 3.244181 TGCCCAGAAATTCTTTTTGGCTC 60.244 43.478 17.68 4.41 36.26 4.70
4041 4298 3.866066 GCCCAGAAATTCTTTTTGGCTCC 60.866 47.826 12.56 0.00 34.26 4.70
4042 4299 3.578688 CCAGAAATTCTTTTTGGCTCCG 58.421 45.455 0.00 0.00 0.00 4.63
4043 4300 3.578688 CAGAAATTCTTTTTGGCTCCGG 58.421 45.455 0.00 0.00 0.00 5.14
4044 4301 3.005791 CAGAAATTCTTTTTGGCTCCGGT 59.994 43.478 0.00 0.00 0.00 5.28
4045 4302 3.641436 AGAAATTCTTTTTGGCTCCGGTT 59.359 39.130 0.00 0.00 0.00 4.44
4046 4303 3.385193 AATTCTTTTTGGCTCCGGTTG 57.615 42.857 0.00 0.00 0.00 3.77
4047 4304 0.387565 TTCTTTTTGGCTCCGGTTGC 59.612 50.000 0.00 7.56 0.00 4.17
4048 4305 1.371635 CTTTTTGGCTCCGGTTGCG 60.372 57.895 0.00 0.00 0.00 4.85
4049 4306 2.070654 CTTTTTGGCTCCGGTTGCGT 62.071 55.000 0.00 0.00 0.00 5.24
4050 4307 1.668101 TTTTTGGCTCCGGTTGCGTT 61.668 50.000 0.00 0.00 0.00 4.84
4051 4308 2.343163 TTTTGGCTCCGGTTGCGTTG 62.343 55.000 0.00 0.00 0.00 4.10
4052 4309 4.555709 TGGCTCCGGTTGCGTTGT 62.556 61.111 0.00 0.00 0.00 3.32
4053 4310 4.025401 GGCTCCGGTTGCGTTGTG 62.025 66.667 0.00 0.00 0.00 3.33
4054 4311 3.276846 GCTCCGGTTGCGTTGTGT 61.277 61.111 0.00 0.00 0.00 3.72
4055 4312 1.957186 GCTCCGGTTGCGTTGTGTA 60.957 57.895 0.00 0.00 0.00 2.90
4056 4313 1.897398 GCTCCGGTTGCGTTGTGTAG 61.897 60.000 0.00 0.00 0.00 2.74
4057 4314 1.289109 CTCCGGTTGCGTTGTGTAGG 61.289 60.000 0.00 0.00 0.00 3.18
4058 4315 2.322081 CCGGTTGCGTTGTGTAGGG 61.322 63.158 0.00 0.00 0.00 3.53
4059 4316 2.951458 GGTTGCGTTGTGTAGGGC 59.049 61.111 0.00 0.00 0.00 5.19
4060 4317 1.894756 GGTTGCGTTGTGTAGGGCA 60.895 57.895 0.00 0.00 0.00 5.36
4061 4318 1.241315 GGTTGCGTTGTGTAGGGCAT 61.241 55.000 0.00 0.00 35.03 4.40
4062 4319 0.168128 GTTGCGTTGTGTAGGGCATC 59.832 55.000 0.00 0.00 35.03 3.91
4063 4320 0.250510 TTGCGTTGTGTAGGGCATCA 60.251 50.000 0.00 0.00 35.03 3.07
4064 4321 0.673333 TGCGTTGTGTAGGGCATCAG 60.673 55.000 0.00 0.00 0.00 2.90
4065 4322 0.673644 GCGTTGTGTAGGGCATCAGT 60.674 55.000 0.00 0.00 0.00 3.41
4066 4323 1.078709 CGTTGTGTAGGGCATCAGTG 58.921 55.000 0.00 0.00 0.00 3.66
4076 4333 2.952714 GCATCAGTGCCCAAAGACT 58.047 52.632 0.00 0.00 45.76 3.24
4077 4334 2.113860 GCATCAGTGCCCAAAGACTA 57.886 50.000 0.00 0.00 45.76 2.59
4078 4335 2.012673 GCATCAGTGCCCAAAGACTAG 58.987 52.381 0.00 0.00 45.76 2.57
4079 4336 2.355108 GCATCAGTGCCCAAAGACTAGA 60.355 50.000 0.00 0.00 45.76 2.43
4080 4337 3.869912 GCATCAGTGCCCAAAGACTAGAA 60.870 47.826 0.00 0.00 45.76 2.10
4081 4338 4.326826 CATCAGTGCCCAAAGACTAGAAA 58.673 43.478 0.00 0.00 0.00 2.52
4082 4339 4.640771 TCAGTGCCCAAAGACTAGAAAT 57.359 40.909 0.00 0.00 0.00 2.17
4083 4340 4.326826 TCAGTGCCCAAAGACTAGAAATG 58.673 43.478 0.00 0.00 0.00 2.32
4084 4341 4.041567 TCAGTGCCCAAAGACTAGAAATGA 59.958 41.667 0.00 0.00 0.00 2.57
4085 4342 4.761739 CAGTGCCCAAAGACTAGAAATGAA 59.238 41.667 0.00 0.00 0.00 2.57
4086 4343 5.416952 CAGTGCCCAAAGACTAGAAATGAAT 59.583 40.000 0.00 0.00 0.00 2.57
4087 4344 6.012745 AGTGCCCAAAGACTAGAAATGAATT 58.987 36.000 0.00 0.00 0.00 2.17
4088 4345 6.494835 AGTGCCCAAAGACTAGAAATGAATTT 59.505 34.615 0.00 0.00 0.00 1.82
4089 4346 6.587608 GTGCCCAAAGACTAGAAATGAATTTG 59.412 38.462 0.00 0.00 0.00 2.32
4090 4347 6.493115 TGCCCAAAGACTAGAAATGAATTTGA 59.507 34.615 0.00 0.00 0.00 2.69
4091 4348 6.808704 GCCCAAAGACTAGAAATGAATTTGAC 59.191 38.462 0.00 0.00 0.00 3.18
4092 4349 7.523709 GCCCAAAGACTAGAAATGAATTTGACA 60.524 37.037 0.00 0.00 0.00 3.58
4093 4350 8.526147 CCCAAAGACTAGAAATGAATTTGACAT 58.474 33.333 0.00 0.00 0.00 3.06
4094 4351 9.918630 CCAAAGACTAGAAATGAATTTGACATT 57.081 29.630 0.00 0.00 39.25 2.71
4096 4353 9.918630 AAAGACTAGAAATGAATTTGACATTGG 57.081 29.630 0.00 0.00 37.89 3.16
4097 4354 8.641498 AGACTAGAAATGAATTTGACATTGGT 57.359 30.769 0.00 0.00 37.89 3.67
4098 4355 9.082313 AGACTAGAAATGAATTTGACATTGGTT 57.918 29.630 0.00 0.00 37.89 3.67
4099 4356 9.696917 GACTAGAAATGAATTTGACATTGGTTT 57.303 29.630 0.00 0.00 37.89 3.27
4102 4359 8.156994 AGAAATGAATTTGACATTGGTTTTGG 57.843 30.769 0.00 0.00 37.89 3.28
4103 4360 7.774625 AGAAATGAATTTGACATTGGTTTTGGT 59.225 29.630 0.00 0.00 37.89 3.67
4104 4361 7.495135 AATGAATTTGACATTGGTTTTGGTC 57.505 32.000 0.00 0.00 36.74 4.02
4105 4362 6.232581 TGAATTTGACATTGGTTTTGGTCT 57.767 33.333 0.00 0.00 0.00 3.85
4106 4363 7.353414 TGAATTTGACATTGGTTTTGGTCTA 57.647 32.000 0.00 0.00 0.00 2.59
4107 4364 7.206687 TGAATTTGACATTGGTTTTGGTCTAC 58.793 34.615 0.00 0.00 0.00 2.59
4108 4365 6.976934 ATTTGACATTGGTTTTGGTCTACT 57.023 33.333 0.00 0.00 0.00 2.57
4109 4366 6.385649 TTTGACATTGGTTTTGGTCTACTC 57.614 37.500 0.00 0.00 0.00 2.59
4110 4367 4.394729 TGACATTGGTTTTGGTCTACTCC 58.605 43.478 0.00 0.00 0.00 3.85
4111 4368 3.756963 GACATTGGTTTTGGTCTACTCCC 59.243 47.826 0.00 0.00 0.00 4.30
4112 4369 3.397955 ACATTGGTTTTGGTCTACTCCCT 59.602 43.478 0.00 0.00 0.00 4.20
4113 4370 3.782656 TTGGTTTTGGTCTACTCCCTC 57.217 47.619 0.00 0.00 0.00 4.30
4114 4371 1.982958 TGGTTTTGGTCTACTCCCTCC 59.017 52.381 0.00 0.00 0.00 4.30
4115 4372 1.066358 GGTTTTGGTCTACTCCCTCCG 60.066 57.143 0.00 0.00 0.00 4.63
4116 4373 1.066358 GTTTTGGTCTACTCCCTCCGG 60.066 57.143 0.00 0.00 0.00 5.14
4117 4374 0.115745 TTTGGTCTACTCCCTCCGGT 59.884 55.000 0.00 0.00 0.00 5.28
4118 4375 0.324091 TTGGTCTACTCCCTCCGGTC 60.324 60.000 0.00 0.00 0.00 4.79
4119 4376 1.455402 GGTCTACTCCCTCCGGTCC 60.455 68.421 0.00 0.00 0.00 4.46
4120 4377 1.614160 GTCTACTCCCTCCGGTCCT 59.386 63.158 0.00 0.00 0.00 3.85
4121 4378 0.033306 GTCTACTCCCTCCGGTCCTT 60.033 60.000 0.00 0.00 0.00 3.36
4122 4379 0.708802 TCTACTCCCTCCGGTCCTTT 59.291 55.000 0.00 0.00 0.00 3.11
4123 4380 1.078324 TCTACTCCCTCCGGTCCTTTT 59.922 52.381 0.00 0.00 0.00 2.27
4124 4381 1.907255 CTACTCCCTCCGGTCCTTTTT 59.093 52.381 0.00 0.00 0.00 1.94
4125 4382 2.034436 ACTCCCTCCGGTCCTTTTTA 57.966 50.000 0.00 0.00 0.00 1.52
4126 4383 1.627329 ACTCCCTCCGGTCCTTTTTAC 59.373 52.381 0.00 0.00 0.00 2.01
4127 4384 1.907255 CTCCCTCCGGTCCTTTTTACT 59.093 52.381 0.00 0.00 0.00 2.24
4128 4385 1.904537 TCCCTCCGGTCCTTTTTACTC 59.095 52.381 0.00 0.00 0.00 2.59
4129 4386 1.907255 CCCTCCGGTCCTTTTTACTCT 59.093 52.381 0.00 0.00 0.00 3.24
4130 4387 2.354805 CCCTCCGGTCCTTTTTACTCTG 60.355 54.545 0.00 0.00 0.00 3.35
4131 4388 2.347731 CTCCGGTCCTTTTTACTCTGC 58.652 52.381 0.00 0.00 0.00 4.26
4132 4389 1.695242 TCCGGTCCTTTTTACTCTGCA 59.305 47.619 0.00 0.00 0.00 4.41
4133 4390 1.804748 CCGGTCCTTTTTACTCTGCAC 59.195 52.381 0.00 0.00 0.00 4.57
4134 4391 2.489971 CGGTCCTTTTTACTCTGCACA 58.510 47.619 0.00 0.00 0.00 4.57
4135 4392 3.074412 CGGTCCTTTTTACTCTGCACAT 58.926 45.455 0.00 0.00 0.00 3.21
4136 4393 3.502211 CGGTCCTTTTTACTCTGCACATT 59.498 43.478 0.00 0.00 0.00 2.71
4137 4394 4.613622 CGGTCCTTTTTACTCTGCACATTG 60.614 45.833 0.00 0.00 0.00 2.82
4138 4395 4.321230 GGTCCTTTTTACTCTGCACATTGG 60.321 45.833 0.00 0.00 0.00 3.16
4139 4396 4.518970 GTCCTTTTTACTCTGCACATTGGA 59.481 41.667 0.00 0.00 0.00 3.53
4140 4397 5.183904 GTCCTTTTTACTCTGCACATTGGAT 59.816 40.000 0.00 0.00 0.00 3.41
4141 4398 5.774690 TCCTTTTTACTCTGCACATTGGATT 59.225 36.000 0.00 0.00 0.00 3.01
4142 4399 6.267471 TCCTTTTTACTCTGCACATTGGATTT 59.733 34.615 0.00 0.00 0.00 2.17
4143 4400 6.366877 CCTTTTTACTCTGCACATTGGATTTG 59.633 38.462 0.00 0.00 0.00 2.32
4144 4401 4.439305 TTACTCTGCACATTGGATTTGC 57.561 40.909 0.00 0.00 36.76 3.68
4145 4402 1.547372 ACTCTGCACATTGGATTTGCC 59.453 47.619 0.00 0.00 35.26 4.52
4146 4403 0.527113 TCTGCACATTGGATTTGCCG 59.473 50.000 0.00 0.00 40.66 5.69
4147 4404 0.527113 CTGCACATTGGATTTGCCGA 59.473 50.000 0.00 0.00 40.66 5.54
4148 4405 0.964700 TGCACATTGGATTTGCCGAA 59.035 45.000 0.00 0.00 40.66 4.30
4149 4406 1.342496 TGCACATTGGATTTGCCGAAA 59.658 42.857 0.00 0.00 40.66 3.46
4150 4407 1.994779 GCACATTGGATTTGCCGAAAG 59.005 47.619 0.00 0.00 40.66 2.62
4151 4408 2.610232 GCACATTGGATTTGCCGAAAGT 60.610 45.455 0.00 0.00 40.66 2.66
4152 4409 3.244976 CACATTGGATTTGCCGAAAGTC 58.755 45.455 0.00 0.00 40.66 3.01
4153 4410 2.890311 ACATTGGATTTGCCGAAAGTCA 59.110 40.909 0.00 0.00 40.66 3.41
4154 4411 3.320541 ACATTGGATTTGCCGAAAGTCAA 59.679 39.130 0.00 0.00 40.66 3.18
4155 4412 3.641437 TTGGATTTGCCGAAAGTCAAG 57.359 42.857 0.00 0.00 40.66 3.02
4156 4413 1.269448 TGGATTTGCCGAAAGTCAAGC 59.731 47.619 0.00 0.00 40.66 4.01
4157 4414 1.541588 GGATTTGCCGAAAGTCAAGCT 59.458 47.619 0.00 0.00 0.00 3.74
4158 4415 2.029918 GGATTTGCCGAAAGTCAAGCTT 60.030 45.455 0.00 0.00 39.52 3.74
4159 4416 6.004075 TGGATTTGCCGAAAGTCAAGCTTT 62.004 41.667 0.00 0.00 41.46 3.51
4160 4417 2.490328 TTGCCGAAAGTCAAGCTTTG 57.510 45.000 0.00 0.00 46.54 2.77
4161 4418 0.030638 TGCCGAAAGTCAAGCTTTGC 59.969 50.000 0.00 0.00 46.54 3.68
4162 4419 0.312102 GCCGAAAGTCAAGCTTTGCT 59.688 50.000 0.00 0.00 46.54 3.91
4163 4420 1.535462 GCCGAAAGTCAAGCTTTGCTA 59.465 47.619 0.00 0.00 46.54 3.49
4164 4421 2.031157 GCCGAAAGTCAAGCTTTGCTAA 60.031 45.455 0.00 0.00 46.54 3.09
4165 4422 3.814945 CCGAAAGTCAAGCTTTGCTAAG 58.185 45.455 0.00 3.31 46.54 2.18
4166 4423 3.251004 CCGAAAGTCAAGCTTTGCTAAGT 59.749 43.478 9.64 0.00 46.54 2.24
4167 4424 4.261197 CCGAAAGTCAAGCTTTGCTAAGTT 60.261 41.667 9.64 0.28 46.54 2.66
4168 4425 5.273944 CGAAAGTCAAGCTTTGCTAAGTTT 58.726 37.500 9.64 6.95 46.54 2.66
4169 4426 5.172053 CGAAAGTCAAGCTTTGCTAAGTTTG 59.828 40.000 24.14 24.14 46.54 2.93
4175 4432 5.337578 AAGCTTTGCTAAGTTTGACCAAA 57.662 34.783 9.00 0.00 38.25 3.28
4176 4433 5.535753 AGCTTTGCTAAGTTTGACCAAAT 57.464 34.783 9.64 0.00 36.99 2.32
4177 4434 5.917462 AGCTTTGCTAAGTTTGACCAAATT 58.083 33.333 9.64 0.00 36.99 1.82
4178 4435 6.348498 AGCTTTGCTAAGTTTGACCAAATTT 58.652 32.000 9.64 8.03 36.99 1.82
4179 4436 7.496747 AGCTTTGCTAAGTTTGACCAAATTTA 58.503 30.769 9.64 9.17 36.99 1.40
4180 4437 8.150296 AGCTTTGCTAAGTTTGACCAAATTTAT 58.850 29.630 9.64 0.00 36.99 1.40
4181 4438 9.418045 GCTTTGCTAAGTTTGACCAAATTTATA 57.582 29.630 9.64 2.68 33.85 0.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 1.609072 GGAACACCCTTTTGACAGAGC 59.391 52.381 0.00 0.00 0.00 4.09
10 11 2.230660 GGGAACACCCTTTTGACAGAG 58.769 52.381 0.00 0.00 40.49 3.35
48 49 2.490328 TGACTTTTGCCGCTTTCTTG 57.510 45.000 0.00 0.00 0.00 3.02
87 96 1.066002 GAATGTGGGATGTGGAATGCG 59.934 52.381 0.00 0.00 0.00 4.73
99 108 2.040544 GTGGAGTGCGGAATGTGGG 61.041 63.158 0.00 0.00 0.00 4.61
137 146 3.644399 GACGACCAAGACCGGGAGC 62.644 68.421 6.32 0.00 0.00 4.70
241 256 1.828660 TAGCTCCTACCTCGCCTGC 60.829 63.158 0.00 0.00 0.00 4.85
255 270 1.617947 GGCAGGCAGGTACAGTAGCT 61.618 60.000 6.46 6.46 36.89 3.32
298 339 2.428085 GGAGGGAGAGGAGGAACGC 61.428 68.421 0.00 0.00 0.00 4.84
317 358 0.991920 TGATGGTTTCAGGGAGGACC 59.008 55.000 0.00 0.00 40.67 4.46
318 359 2.648059 CATGATGGTTTCAGGGAGGAC 58.352 52.381 0.00 0.00 37.89 3.85
319 360 1.064463 GCATGATGGTTTCAGGGAGGA 60.064 52.381 0.00 0.00 37.89 3.71
320 361 1.341285 TGCATGATGGTTTCAGGGAGG 60.341 52.381 0.00 0.00 37.89 4.30
321 362 2.133281 TGCATGATGGTTTCAGGGAG 57.867 50.000 0.00 0.00 37.89 4.30
322 363 2.832643 ATGCATGATGGTTTCAGGGA 57.167 45.000 0.00 0.00 40.82 4.20
323 364 2.761767 TGAATGCATGATGGTTTCAGGG 59.238 45.455 0.00 0.00 37.89 4.45
324 365 4.430007 CTTGAATGCATGATGGTTTCAGG 58.570 43.478 0.00 0.00 37.89 3.86
325 366 4.081862 ACCTTGAATGCATGATGGTTTCAG 60.082 41.667 0.00 0.00 37.89 3.02
326 367 3.833650 ACCTTGAATGCATGATGGTTTCA 59.166 39.130 0.00 0.00 39.12 2.69
445 486 1.202568 TCCAGCCAATCATCTAGCACG 60.203 52.381 0.00 0.00 0.00 5.34
446 487 2.216898 GTCCAGCCAATCATCTAGCAC 58.783 52.381 0.00 0.00 0.00 4.40
447 488 1.839354 TGTCCAGCCAATCATCTAGCA 59.161 47.619 0.00 0.00 0.00 3.49
448 489 2.158842 AGTGTCCAGCCAATCATCTAGC 60.159 50.000 0.00 0.00 0.00 3.42
449 490 3.387374 AGAGTGTCCAGCCAATCATCTAG 59.613 47.826 0.00 0.00 32.08 2.43
496 537 5.006941 GCGTGACTTTACTGGTAAGAACAAA 59.993 40.000 0.00 0.00 0.00 2.83
519 560 3.549070 CACACAAGAAAACAAGCAAGAGC 59.451 43.478 0.00 0.00 42.56 4.09
579 621 0.100682 CAGCAGCAGCCTAGCAAATG 59.899 55.000 0.00 0.00 43.56 2.32
714 760 6.015940 CAGGACAAGTATTTCTCCTGCTTTTT 60.016 38.462 8.92 0.00 41.25 1.94
871 918 9.167311 ACAAGTATTTCTCCTGCTTTTATACTG 57.833 33.333 0.00 0.00 30.25 2.74
939 986 0.107312 AATAGTGCTGCAGAGGCTGG 60.107 55.000 20.43 0.00 41.91 4.85
970 1017 0.389166 CGCGGAGAAGCTGAAGAAGT 60.389 55.000 0.00 0.00 34.40 3.01
985 1032 2.764314 CCATTCTTCCTTGCCGCGG 61.764 63.158 24.05 24.05 0.00 6.46
989 1036 2.158549 AGCCTATCCATTCTTCCTTGCC 60.159 50.000 0.00 0.00 0.00 4.52
1023 1070 0.859232 CCGAAACGATCATAAGGCGG 59.141 55.000 0.00 0.00 0.00 6.13
1101 1148 1.141053 AGACACAACAGTCCAGGTTCC 59.859 52.381 0.00 0.00 39.34 3.62
1901 1952 2.760092 ACCACACACAAGAACATTGCTT 59.240 40.909 0.00 0.00 0.00 3.91
2164 2216 3.321968 TGACCGATAGCTTGCATGATACT 59.678 43.478 3.33 0.00 0.00 2.12
2463 2518 2.953648 TGCAGCATTGGGATCAGTAATG 59.046 45.455 0.00 9.96 35.47 1.90
2485 2540 2.224769 GGTCCAGATCCCAGTTCAAACA 60.225 50.000 0.00 0.00 0.00 2.83
2489 2544 2.696864 GGGTCCAGATCCCAGTTCA 58.303 57.895 0.00 0.00 44.05 3.18
2543 2599 8.035394 AGACGATTGATCTAAAGTAAGCTCAAA 58.965 33.333 0.00 0.00 35.79 2.69
2592 2648 6.348498 CATTCCACAAGGATGTATCAGTGTA 58.652 40.000 0.00 0.00 45.26 2.90
2658 2714 2.591923 TGGCCTTGTTTGTCAGCATAA 58.408 42.857 3.32 0.00 0.00 1.90
2663 2719 3.525268 ACTTTTGGCCTTGTTTGTCAG 57.475 42.857 3.32 0.00 0.00 3.51
3115 3174 0.687354 GTCAGTTCCAAGCCCTCTGA 59.313 55.000 0.00 0.00 33.60 3.27
3251 3310 7.510549 ACACAAGAAGCAGTACATTTGTTAT 57.489 32.000 0.00 0.00 0.00 1.89
3253 3312 5.835113 ACACAAGAAGCAGTACATTTGTT 57.165 34.783 0.00 0.00 0.00 2.83
3266 3325 6.456181 GCCGAGAGATCAATTTACACAAGAAG 60.456 42.308 0.00 0.00 0.00 2.85
3280 3339 3.196469 AGTTTGAATCAGCCGAGAGATCA 59.804 43.478 0.00 0.00 0.00 2.92
3352 3411 9.590451 CCATTGAACATTTCTTATTAGTGCATT 57.410 29.630 0.00 0.00 0.00 3.56
3410 3469 6.770785 ACATTCTGGTGCAGTAAGAACTTAAA 59.229 34.615 7.59 0.00 33.01 1.52
3524 3583 9.828852 GAGTTATCTATCAGGTACAGATTAACG 57.171 37.037 5.51 0.00 35.73 3.18
3535 3594 7.127955 AGGAAACATTGGAGTTATCTATCAGGT 59.872 37.037 0.00 0.00 0.00 4.00
3541 3600 8.388656 ACCTAAGGAAACATTGGAGTTATCTA 57.611 34.615 0.00 0.00 0.00 1.98
3836 4082 1.908340 GAGCCTGCAGACCATCCACT 61.908 60.000 17.39 0.00 0.00 4.00
3845 4099 2.757508 CTCCTCGGAGCCTGCAGA 60.758 66.667 17.39 0.00 35.31 4.26
3890 4147 1.686052 GATGTGGCACCTTTTTGACCA 59.314 47.619 16.26 0.00 0.00 4.02
3895 4152 3.006110 CAGTGATGATGTGGCACCTTTTT 59.994 43.478 16.26 0.00 33.14 1.94
3896 4153 2.559668 CAGTGATGATGTGGCACCTTTT 59.440 45.455 16.26 0.00 33.14 2.27
3897 4154 2.165167 CAGTGATGATGTGGCACCTTT 58.835 47.619 16.26 0.00 33.14 3.11
3898 4155 1.352017 TCAGTGATGATGTGGCACCTT 59.648 47.619 16.26 2.01 33.14 3.50
3899 4156 0.986527 TCAGTGATGATGTGGCACCT 59.013 50.000 16.26 4.83 33.14 4.00
3900 4157 1.674441 CATCAGTGATGATGTGGCACC 59.326 52.381 26.07 0.43 42.09 5.01
3901 4158 1.065102 GCATCAGTGATGATGTGGCAC 59.935 52.381 32.61 11.55 45.39 5.01
3902 4159 1.385528 GCATCAGTGATGATGTGGCA 58.614 50.000 32.61 0.00 45.39 4.92
3903 4160 0.666913 GGCATCAGTGATGATGTGGC 59.333 55.000 32.61 17.80 45.39 5.01
3904 4161 1.947456 CAGGCATCAGTGATGATGTGG 59.053 52.381 32.61 14.64 45.39 4.17
3905 4162 2.914059 TCAGGCATCAGTGATGATGTG 58.086 47.619 32.61 23.99 45.39 3.21
3906 4163 3.639672 TTCAGGCATCAGTGATGATGT 57.360 42.857 32.61 15.23 45.39 3.06
3907 4164 4.976224 TTTTCAGGCATCAGTGATGATG 57.024 40.909 32.61 27.19 46.13 3.07
3927 4184 4.832266 TGTGGAGCTGGTGTCATAATTTTT 59.168 37.500 0.00 0.00 0.00 1.94
3928 4185 4.406456 TGTGGAGCTGGTGTCATAATTTT 58.594 39.130 0.00 0.00 0.00 1.82
3929 4186 4.012374 CTGTGGAGCTGGTGTCATAATTT 58.988 43.478 0.00 0.00 0.00 1.82
3930 4187 3.614092 CTGTGGAGCTGGTGTCATAATT 58.386 45.455 0.00 0.00 0.00 1.40
3931 4188 2.681976 GCTGTGGAGCTGGTGTCATAAT 60.682 50.000 0.00 0.00 42.52 1.28
3932 4189 1.339055 GCTGTGGAGCTGGTGTCATAA 60.339 52.381 0.00 0.00 42.52 1.90
3933 4190 0.250234 GCTGTGGAGCTGGTGTCATA 59.750 55.000 0.00 0.00 42.52 2.15
3934 4191 1.002868 GCTGTGGAGCTGGTGTCAT 60.003 57.895 0.00 0.00 42.52 3.06
3935 4192 2.427320 GCTGTGGAGCTGGTGTCA 59.573 61.111 0.00 0.00 42.52 3.58
3936 4193 2.359230 GGCTGTGGAGCTGGTGTC 60.359 66.667 0.00 0.00 45.44 3.67
3937 4194 3.170672 TGGCTGTGGAGCTGGTGT 61.171 61.111 0.00 0.00 45.44 4.16
3938 4195 2.670934 GTGGCTGTGGAGCTGGTG 60.671 66.667 0.00 0.00 45.44 4.17
3939 4196 2.851102 AGTGGCTGTGGAGCTGGT 60.851 61.111 0.00 0.00 45.44 4.00
3940 4197 2.046507 GAGTGGCTGTGGAGCTGG 60.047 66.667 0.00 0.00 45.44 4.85
3941 4198 2.046507 GGAGTGGCTGTGGAGCTG 60.047 66.667 0.00 0.00 45.44 4.24
3942 4199 3.699894 CGGAGTGGCTGTGGAGCT 61.700 66.667 0.00 0.00 45.44 4.09
3943 4200 1.961180 ATACGGAGTGGCTGTGGAGC 61.961 60.000 0.00 0.00 45.73 4.70
3944 4201 1.399714 TATACGGAGTGGCTGTGGAG 58.600 55.000 0.00 0.00 45.73 3.86
3945 4202 1.855295 TTATACGGAGTGGCTGTGGA 58.145 50.000 0.00 0.00 45.73 4.02
3946 4203 2.550978 CTTTATACGGAGTGGCTGTGG 58.449 52.381 0.00 0.00 45.73 4.17
3947 4204 2.167693 TCCTTTATACGGAGTGGCTGTG 59.832 50.000 0.00 0.00 45.73 3.66
3948 4205 2.463752 TCCTTTATACGGAGTGGCTGT 58.536 47.619 0.00 0.00 45.73 4.40
3949 4206 3.536956 TTCCTTTATACGGAGTGGCTG 57.463 47.619 0.00 0.00 45.73 4.85
3950 4207 4.163458 TCAATTCCTTTATACGGAGTGGCT 59.837 41.667 0.00 0.00 45.73 4.75
3951 4208 4.272748 GTCAATTCCTTTATACGGAGTGGC 59.727 45.833 0.00 0.00 45.73 5.01
3952 4209 5.424757 TGTCAATTCCTTTATACGGAGTGG 58.575 41.667 0.00 0.00 45.73 4.00
3953 4210 6.978343 TTGTCAATTCCTTTATACGGAGTG 57.022 37.500 0.00 0.00 45.73 3.51
3955 4212 7.372451 TGTTTGTCAATTCCTTTATACGGAG 57.628 36.000 0.00 0.00 0.00 4.63
3956 4213 7.446013 ACTTGTTTGTCAATTCCTTTATACGGA 59.554 33.333 0.00 0.00 35.35 4.69
3957 4214 7.590279 ACTTGTTTGTCAATTCCTTTATACGG 58.410 34.615 0.00 0.00 35.35 4.02
3958 4215 8.504005 AGACTTGTTTGTCAATTCCTTTATACG 58.496 33.333 0.00 0.00 39.27 3.06
3961 4218 9.574516 AGTAGACTTGTTTGTCAATTCCTTTAT 57.425 29.630 0.00 0.00 39.27 1.40
3962 4219 8.836413 CAGTAGACTTGTTTGTCAATTCCTTTA 58.164 33.333 0.00 0.00 39.27 1.85
3963 4220 7.556275 TCAGTAGACTTGTTTGTCAATTCCTTT 59.444 33.333 0.00 0.00 39.27 3.11
3964 4221 7.054124 TCAGTAGACTTGTTTGTCAATTCCTT 58.946 34.615 0.00 0.00 39.27 3.36
3965 4222 6.591935 TCAGTAGACTTGTTTGTCAATTCCT 58.408 36.000 0.00 0.00 39.27 3.36
3966 4223 6.861065 TCAGTAGACTTGTTTGTCAATTCC 57.139 37.500 0.00 0.00 39.27 3.01
3967 4224 8.316640 AGATCAGTAGACTTGTTTGTCAATTC 57.683 34.615 0.00 0.00 39.27 2.17
3968 4225 9.429359 CTAGATCAGTAGACTTGTTTGTCAATT 57.571 33.333 0.00 0.00 39.27 2.32
3969 4226 7.547370 GCTAGATCAGTAGACTTGTTTGTCAAT 59.453 37.037 0.00 0.00 39.27 2.57
3970 4227 6.868864 GCTAGATCAGTAGACTTGTTTGTCAA 59.131 38.462 0.00 0.00 39.27 3.18
3971 4228 6.209589 AGCTAGATCAGTAGACTTGTTTGTCA 59.790 38.462 0.00 0.00 39.27 3.58
3972 4229 6.529829 CAGCTAGATCAGTAGACTTGTTTGTC 59.470 42.308 0.00 0.00 37.23 3.18
3973 4230 6.393990 CAGCTAGATCAGTAGACTTGTTTGT 58.606 40.000 0.00 0.00 0.00 2.83
3974 4231 5.290643 GCAGCTAGATCAGTAGACTTGTTTG 59.709 44.000 0.00 0.00 0.00 2.93
3975 4232 5.415221 GCAGCTAGATCAGTAGACTTGTTT 58.585 41.667 0.00 0.00 0.00 2.83
3976 4233 4.142049 GGCAGCTAGATCAGTAGACTTGTT 60.142 45.833 0.00 0.00 0.00 2.83
3977 4234 3.383185 GGCAGCTAGATCAGTAGACTTGT 59.617 47.826 0.00 0.00 0.00 3.16
3978 4235 3.382865 TGGCAGCTAGATCAGTAGACTTG 59.617 47.826 0.00 0.00 0.00 3.16
3979 4236 3.636300 CTGGCAGCTAGATCAGTAGACTT 59.364 47.826 0.00 0.00 0.00 3.01
3980 4237 3.221771 CTGGCAGCTAGATCAGTAGACT 58.778 50.000 0.00 0.00 0.00 3.24
3981 4238 2.955660 ACTGGCAGCTAGATCAGTAGAC 59.044 50.000 15.89 0.00 38.52 2.59
3982 4239 2.954989 CACTGGCAGCTAGATCAGTAGA 59.045 50.000 15.89 0.00 38.27 2.59
3983 4240 2.545532 GCACTGGCAGCTAGATCAGTAG 60.546 54.545 15.89 3.86 38.27 2.57
3984 4241 1.410517 GCACTGGCAGCTAGATCAGTA 59.589 52.381 15.89 0.00 38.27 2.74
3985 4242 0.177604 GCACTGGCAGCTAGATCAGT 59.822 55.000 15.89 4.00 40.62 3.41
3986 4243 0.532417 GGCACTGGCAGCTAGATCAG 60.532 60.000 15.89 3.30 43.71 2.90
3987 4244 1.524002 GGCACTGGCAGCTAGATCA 59.476 57.895 15.89 0.00 43.71 2.92
3988 4245 1.227793 GGGCACTGGCAGCTAGATC 60.228 63.158 15.89 3.26 43.71 2.75
3989 4246 1.277580 AAGGGCACTGGCAGCTAGAT 61.278 55.000 15.89 0.00 43.71 1.98
3990 4247 1.903877 GAAGGGCACTGGCAGCTAGA 61.904 60.000 15.89 0.00 43.71 2.43
3991 4248 1.451028 GAAGGGCACTGGCAGCTAG 60.451 63.158 15.89 3.79 43.71 3.42
3992 4249 2.671070 GAAGGGCACTGGCAGCTA 59.329 61.111 15.89 0.00 43.71 3.32
3993 4250 4.711949 CGAAGGGCACTGGCAGCT 62.712 66.667 15.89 0.00 43.71 4.24
3994 4251 4.704833 TCGAAGGGCACTGGCAGC 62.705 66.667 15.89 1.49 43.71 5.25
3995 4252 2.435586 CTCGAAGGGCACTGGCAG 60.436 66.667 14.16 14.16 43.71 4.85
3996 4253 4.704833 GCTCGAAGGGCACTGGCA 62.705 66.667 4.78 0.00 43.71 4.92
3997 4254 2.914777 CTAGCTCGAAGGGCACTGGC 62.915 65.000 0.00 0.00 40.13 4.85
3998 4255 1.142748 CTAGCTCGAAGGGCACTGG 59.857 63.158 0.00 0.00 0.00 4.00
3999 4256 1.520342 GCTAGCTCGAAGGGCACTG 60.520 63.158 7.70 0.00 0.00 3.66
4000 4257 1.684049 AGCTAGCTCGAAGGGCACT 60.684 57.895 12.68 0.00 0.00 4.40
4001 4258 1.520342 CAGCTAGCTCGAAGGGCAC 60.520 63.158 16.15 0.00 0.00 5.01
4002 4259 2.895680 CAGCTAGCTCGAAGGGCA 59.104 61.111 16.15 0.00 0.00 5.36
4003 4260 2.587473 GCAGCTAGCTCGAAGGGC 60.587 66.667 16.15 10.68 41.15 5.19
4004 4261 2.107953 GGCAGCTAGCTCGAAGGG 59.892 66.667 16.15 3.40 44.79 3.95
4005 4262 2.107953 GGGCAGCTAGCTCGAAGG 59.892 66.667 16.15 4.23 44.79 3.46
4010 4267 1.946081 GAATTTCTGGGCAGCTAGCTC 59.054 52.381 16.15 9.87 46.89 4.09
4011 4268 1.563410 AGAATTTCTGGGCAGCTAGCT 59.437 47.619 12.68 12.68 44.79 3.32
4012 4269 2.049888 AGAATTTCTGGGCAGCTAGC 57.950 50.000 6.62 6.62 44.65 3.42
4013 4270 5.166398 CAAAAAGAATTTCTGGGCAGCTAG 58.834 41.667 0.00 0.00 37.28 3.42
4014 4271 4.021192 CCAAAAAGAATTTCTGGGCAGCTA 60.021 41.667 0.00 0.00 37.28 3.32
4015 4272 3.244318 CCAAAAAGAATTTCTGGGCAGCT 60.244 43.478 0.00 0.00 37.28 4.24
4016 4273 3.069289 CCAAAAAGAATTTCTGGGCAGC 58.931 45.455 0.00 0.00 37.28 5.25
4017 4274 3.069289 GCCAAAAAGAATTTCTGGGCAG 58.931 45.455 18.92 4.92 43.52 4.85
4018 4275 2.705127 AGCCAAAAAGAATTTCTGGGCA 59.295 40.909 22.75 0.00 45.24 5.36
4019 4276 3.329386 GAGCCAAAAAGAATTTCTGGGC 58.671 45.455 17.30 17.30 44.03 5.36
4020 4277 3.614870 CGGAGCCAAAAAGAATTTCTGGG 60.615 47.826 0.00 1.60 37.28 4.45
4021 4278 3.578688 CGGAGCCAAAAAGAATTTCTGG 58.421 45.455 0.00 0.00 37.28 3.86
4022 4279 3.005791 ACCGGAGCCAAAAAGAATTTCTG 59.994 43.478 9.46 0.00 37.28 3.02
4023 4280 3.230976 ACCGGAGCCAAAAAGAATTTCT 58.769 40.909 9.46 0.00 37.28 2.52
4024 4281 3.660501 ACCGGAGCCAAAAAGAATTTC 57.339 42.857 9.46 0.00 37.28 2.17
4025 4282 3.727726 CAACCGGAGCCAAAAAGAATTT 58.272 40.909 9.46 0.00 42.41 1.82
4026 4283 2.547855 GCAACCGGAGCCAAAAAGAATT 60.548 45.455 9.46 0.00 0.00 2.17
4027 4284 1.000843 GCAACCGGAGCCAAAAAGAAT 59.999 47.619 9.46 0.00 0.00 2.40
4028 4285 0.387565 GCAACCGGAGCCAAAAAGAA 59.612 50.000 9.46 0.00 0.00 2.52
4029 4286 1.791103 CGCAACCGGAGCCAAAAAGA 61.791 55.000 9.46 0.00 0.00 2.52
4030 4287 1.371635 CGCAACCGGAGCCAAAAAG 60.372 57.895 9.46 0.00 0.00 2.27
4031 4288 1.668101 AACGCAACCGGAGCCAAAAA 61.668 50.000 9.46 0.00 39.22 1.94
4032 4289 2.122167 AACGCAACCGGAGCCAAAA 61.122 52.632 9.46 0.00 39.22 2.44
4033 4290 2.517402 AACGCAACCGGAGCCAAA 60.517 55.556 9.46 0.00 39.22 3.28
4034 4291 3.283684 CAACGCAACCGGAGCCAA 61.284 61.111 9.46 0.00 39.22 4.52
4035 4292 4.555709 ACAACGCAACCGGAGCCA 62.556 61.111 9.46 0.00 39.22 4.75
4036 4293 4.025401 CACAACGCAACCGGAGCC 62.025 66.667 9.46 0.00 39.22 4.70
4037 4294 1.897398 CTACACAACGCAACCGGAGC 61.897 60.000 9.46 11.47 39.22 4.70
4038 4295 1.289109 CCTACACAACGCAACCGGAG 61.289 60.000 9.46 0.15 39.22 4.63
4039 4296 1.301087 CCTACACAACGCAACCGGA 60.301 57.895 9.46 0.00 39.22 5.14
4040 4297 2.322081 CCCTACACAACGCAACCGG 61.322 63.158 0.00 0.00 39.22 5.28
4041 4298 2.961669 GCCCTACACAACGCAACCG 61.962 63.158 0.00 0.00 41.14 4.44
4042 4299 1.241315 ATGCCCTACACAACGCAACC 61.241 55.000 0.00 0.00 34.38 3.77
4043 4300 0.168128 GATGCCCTACACAACGCAAC 59.832 55.000 0.00 0.00 34.38 4.17
4044 4301 0.250510 TGATGCCCTACACAACGCAA 60.251 50.000 0.00 0.00 34.38 4.85
4045 4302 0.673333 CTGATGCCCTACACAACGCA 60.673 55.000 0.00 0.00 35.35 5.24
4046 4303 0.673644 ACTGATGCCCTACACAACGC 60.674 55.000 0.00 0.00 0.00 4.84
4047 4304 1.078709 CACTGATGCCCTACACAACG 58.921 55.000 0.00 0.00 0.00 4.10
4048 4305 0.804989 GCACTGATGCCCTACACAAC 59.195 55.000 0.00 0.00 46.97 3.32
4049 4306 3.248043 GCACTGATGCCCTACACAA 57.752 52.632 0.00 0.00 46.97 3.33
4059 4316 3.616956 TCTAGTCTTTGGGCACTGATG 57.383 47.619 0.00 0.00 0.00 3.07
4060 4317 4.640771 TTTCTAGTCTTTGGGCACTGAT 57.359 40.909 0.00 0.00 0.00 2.90
4061 4318 4.041567 TCATTTCTAGTCTTTGGGCACTGA 59.958 41.667 0.00 0.00 0.00 3.41
4062 4319 4.326826 TCATTTCTAGTCTTTGGGCACTG 58.673 43.478 0.00 0.00 0.00 3.66
4063 4320 4.640771 TCATTTCTAGTCTTTGGGCACT 57.359 40.909 0.00 0.00 0.00 4.40
4064 4321 5.904362 ATTCATTTCTAGTCTTTGGGCAC 57.096 39.130 0.00 0.00 0.00 5.01
4065 4322 6.493115 TCAAATTCATTTCTAGTCTTTGGGCA 59.507 34.615 0.00 0.00 0.00 5.36
4066 4323 6.808704 GTCAAATTCATTTCTAGTCTTTGGGC 59.191 38.462 0.00 0.00 0.00 5.36
4067 4324 7.885297 TGTCAAATTCATTTCTAGTCTTTGGG 58.115 34.615 0.00 0.00 0.00 4.12
4068 4325 9.918630 AATGTCAAATTCATTTCTAGTCTTTGG 57.081 29.630 0.00 0.00 32.50 3.28
4070 4327 9.918630 CCAATGTCAAATTCATTTCTAGTCTTT 57.081 29.630 0.00 0.00 33.92 2.52
4071 4328 9.082313 ACCAATGTCAAATTCATTTCTAGTCTT 57.918 29.630 0.00 0.00 33.92 3.01
4072 4329 8.641498 ACCAATGTCAAATTCATTTCTAGTCT 57.359 30.769 0.00 0.00 33.92 3.24
4073 4330 9.696917 AAACCAATGTCAAATTCATTTCTAGTC 57.303 29.630 0.00 0.00 33.92 2.59
4076 4333 9.270640 CCAAAACCAATGTCAAATTCATTTCTA 57.729 29.630 0.00 0.00 33.92 2.10
4077 4334 7.774625 ACCAAAACCAATGTCAAATTCATTTCT 59.225 29.630 0.00 0.00 33.92 2.52
4078 4335 7.929159 ACCAAAACCAATGTCAAATTCATTTC 58.071 30.769 0.00 0.00 33.92 2.17
4079 4336 7.774625 AGACCAAAACCAATGTCAAATTCATTT 59.225 29.630 0.00 0.00 33.92 2.32
4080 4337 7.281841 AGACCAAAACCAATGTCAAATTCATT 58.718 30.769 0.00 0.00 36.16 2.57
4081 4338 6.829849 AGACCAAAACCAATGTCAAATTCAT 58.170 32.000 0.00 0.00 0.00 2.57
4082 4339 6.232581 AGACCAAAACCAATGTCAAATTCA 57.767 33.333 0.00 0.00 0.00 2.57
4083 4340 7.433680 AGTAGACCAAAACCAATGTCAAATTC 58.566 34.615 0.00 0.00 0.00 2.17
4084 4341 7.360113 AGTAGACCAAAACCAATGTCAAATT 57.640 32.000 0.00 0.00 0.00 1.82
4085 4342 6.015434 GGAGTAGACCAAAACCAATGTCAAAT 60.015 38.462 0.00 0.00 0.00 2.32
4086 4343 5.300792 GGAGTAGACCAAAACCAATGTCAAA 59.699 40.000 0.00 0.00 0.00 2.69
4087 4344 4.825085 GGAGTAGACCAAAACCAATGTCAA 59.175 41.667 0.00 0.00 0.00 3.18
4088 4345 4.394729 GGAGTAGACCAAAACCAATGTCA 58.605 43.478 0.00 0.00 0.00 3.58
4089 4346 3.756963 GGGAGTAGACCAAAACCAATGTC 59.243 47.826 0.00 0.00 0.00 3.06
4090 4347 3.397955 AGGGAGTAGACCAAAACCAATGT 59.602 43.478 0.00 0.00 0.00 2.71
4091 4348 4.010349 GAGGGAGTAGACCAAAACCAATG 58.990 47.826 0.00 0.00 0.00 2.82
4092 4349 3.010250 GGAGGGAGTAGACCAAAACCAAT 59.990 47.826 0.00 0.00 0.00 3.16
4093 4350 2.374170 GGAGGGAGTAGACCAAAACCAA 59.626 50.000 0.00 0.00 0.00 3.67
4094 4351 1.982958 GGAGGGAGTAGACCAAAACCA 59.017 52.381 0.00 0.00 0.00 3.67
4095 4352 1.066358 CGGAGGGAGTAGACCAAAACC 60.066 57.143 0.00 0.00 0.00 3.27
4096 4353 2.381725 CGGAGGGAGTAGACCAAAAC 57.618 55.000 0.00 0.00 0.00 2.43
4111 4368 2.289444 TGCAGAGTAAAAAGGACCGGAG 60.289 50.000 9.46 0.00 0.00 4.63
4112 4369 1.695242 TGCAGAGTAAAAAGGACCGGA 59.305 47.619 9.46 0.00 0.00 5.14
4113 4370 1.804748 GTGCAGAGTAAAAAGGACCGG 59.195 52.381 0.00 0.00 0.00 5.28
4114 4371 2.489971 TGTGCAGAGTAAAAAGGACCG 58.510 47.619 0.00 0.00 0.00 4.79
4115 4372 4.321230 CCAATGTGCAGAGTAAAAAGGACC 60.321 45.833 0.00 0.00 0.00 4.46
4116 4373 4.518970 TCCAATGTGCAGAGTAAAAAGGAC 59.481 41.667 0.00 0.00 0.00 3.85
4117 4374 4.724399 TCCAATGTGCAGAGTAAAAAGGA 58.276 39.130 0.00 0.00 0.00 3.36
4118 4375 5.649782 ATCCAATGTGCAGAGTAAAAAGG 57.350 39.130 0.00 0.00 0.00 3.11
4119 4376 6.128742 GCAAATCCAATGTGCAGAGTAAAAAG 60.129 38.462 0.00 0.00 38.19 2.27
4120 4377 5.695816 GCAAATCCAATGTGCAGAGTAAAAA 59.304 36.000 0.00 0.00 38.19 1.94
4121 4378 5.229423 GCAAATCCAATGTGCAGAGTAAAA 58.771 37.500 0.00 0.00 38.19 1.52
4122 4379 4.321899 GGCAAATCCAATGTGCAGAGTAAA 60.322 41.667 4.59 0.00 40.12 2.01
4123 4380 3.193267 GGCAAATCCAATGTGCAGAGTAA 59.807 43.478 4.59 0.00 40.12 2.24
4124 4381 2.754552 GGCAAATCCAATGTGCAGAGTA 59.245 45.455 4.59 0.00 40.12 2.59
4125 4382 1.547372 GGCAAATCCAATGTGCAGAGT 59.453 47.619 4.59 0.00 40.12 3.24
4126 4383 1.468565 CGGCAAATCCAATGTGCAGAG 60.469 52.381 4.59 0.00 40.12 3.35
4127 4384 0.527113 CGGCAAATCCAATGTGCAGA 59.473 50.000 4.59 0.00 40.12 4.26
4128 4385 0.527113 TCGGCAAATCCAATGTGCAG 59.473 50.000 4.59 0.65 40.12 4.41
4129 4386 0.964700 TTCGGCAAATCCAATGTGCA 59.035 45.000 4.59 0.00 40.12 4.57
4130 4387 1.994779 CTTTCGGCAAATCCAATGTGC 59.005 47.619 0.00 0.00 37.55 4.57
4131 4388 3.244976 GACTTTCGGCAAATCCAATGTG 58.755 45.455 0.00 0.00 34.01 3.21
4132 4389 2.890311 TGACTTTCGGCAAATCCAATGT 59.110 40.909 0.00 0.00 34.01 2.71
4133 4390 3.574284 TGACTTTCGGCAAATCCAATG 57.426 42.857 0.00 0.00 34.01 2.82
4134 4391 3.614870 GCTTGACTTTCGGCAAATCCAAT 60.615 43.478 0.00 0.00 34.01 3.16
4135 4392 2.288152 GCTTGACTTTCGGCAAATCCAA 60.288 45.455 0.00 0.00 34.01 3.53
4136 4393 1.269448 GCTTGACTTTCGGCAAATCCA 59.731 47.619 0.00 0.00 34.01 3.41
4137 4394 1.541588 AGCTTGACTTTCGGCAAATCC 59.458 47.619 0.00 0.00 0.00 3.01
4138 4395 2.997485 AGCTTGACTTTCGGCAAATC 57.003 45.000 0.00 0.00 0.00 2.17
4139 4396 3.383761 CAAAGCTTGACTTTCGGCAAAT 58.616 40.909 0.00 0.00 45.78 2.32
4140 4397 2.808244 CAAAGCTTGACTTTCGGCAAA 58.192 42.857 0.00 0.00 45.78 3.68
4141 4398 1.535860 GCAAAGCTTGACTTTCGGCAA 60.536 47.619 0.00 0.00 45.78 4.52
4142 4399 0.030638 GCAAAGCTTGACTTTCGGCA 59.969 50.000 0.00 0.00 45.78 5.69
4143 4400 0.312102 AGCAAAGCTTGACTTTCGGC 59.688 50.000 0.00 0.00 45.78 5.54
4144 4401 3.251004 ACTTAGCAAAGCTTGACTTTCGG 59.749 43.478 0.00 0.00 45.78 4.30
4145 4402 4.474226 ACTTAGCAAAGCTTGACTTTCG 57.526 40.909 0.00 0.00 45.78 3.46
4146 4403 6.265577 TCAAACTTAGCAAAGCTTGACTTTC 58.734 36.000 0.00 0.00 45.78 2.62
4148 4405 5.835113 TCAAACTTAGCAAAGCTTGACTT 57.165 34.783 0.00 0.00 40.93 3.01
4151 4408 3.951037 TGGTCAAACTTAGCAAAGCTTGA 59.049 39.130 0.00 1.00 42.62 3.02
4152 4409 4.305989 TGGTCAAACTTAGCAAAGCTTG 57.694 40.909 0.00 0.00 40.44 4.01
4153 4410 5.337578 TTTGGTCAAACTTAGCAAAGCTT 57.662 34.783 0.00 0.00 38.88 3.74
4154 4411 5.535753 ATTTGGTCAAACTTAGCAAAGCT 57.464 34.783 6.60 0.00 44.67 3.74
4155 4412 6.603237 AAATTTGGTCAAACTTAGCAAAGC 57.397 33.333 6.60 0.00 44.67 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.