>input_sequence_36324
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------ATGGATAGGCTAGATGGCTCTGCCCGCCTTATGATCGTTTCGGATCTTGACCAGACGATGGTGGGTATCTCAGT
TCGATCCTTTGGTTTGCCCAGAAAGAAGGAACCTGGACTGTTGTGTCTGAACAATGTTTGACTTTTTGGATTGTGCACTT
GCAGGTTGATCACTGTGATCCAGAGAACTCGGCCTTGCTCCGTTTCGAGGCGCTCTGGGAGTCTGAGTACTCCCAGGATT
CTCTGCTGGTGTTCTCAACTGGAAGAACGCCGGTCAGTTACAAGGGTCTGAGGGAAAGAAAGCCTTTGCTCACACCGGAC
ATCACCATCATGTCTGTGGGCACTGTGATAGCATATGGCCAGGAGATGACTCCTGATGTTGGCTGGGAGGAATTTCTGAA
TAACAAGTGGGATAGGGATATTGTTGTTCAGGAGACAGCTAAGTTCCCTCATCTAAAGCCACAGGCATGTCCAATGAGTT
GCCTGTCTAGTTTTTCCTGGATTTTTTCAAATTTTACTACTAGCTGAACTAAGATATTTATGTTACTTTGTCTTTGTGCG
TTGCAGCCAGAGAGGAATCAGGGTCCTCATAAGGTCAGCTTCTTCGTCGACAAGCAGGGTGCTCATGAAGTGATTAATTA
TCTTCCTCAAAAACTGGAACAGCTTGGGGTAAGACAAGGCAGGCCTTGGTGACCTTCTCTTTCTCTG---TTCTTTTTGA
CAGGGTTTTGTTAAGATCA-AGTATTGCTTAGCGGTGTTTTATTGACTTCATTGCTTTCTTTCTGTGATCAGCTAGATGT
GAAGATAATCTATAGTAGCGGAGAGGCCCTAGATGTATTGCCACGAGGTGCAGGGAAAGGGCAAGCTCTTATATATTTAC
TCGAGAAGTTCAGTTTGAGCGGAAAACCACCAAGCAATGTTCTTGTGTGTGGTGACTCTGGCAATGATGCAGATTTATTC
AGCGTTCCATCTGCCTATGGTGTCATGGTCAGTGTATAAGCAGTTGCTTGGTTTCAGTGTATTTCATTGTTGACGATGAT
TACTATATAA-GCTTATTACAGAGTTTTGGAACCATATTCAGGTTAGCAATGCCCAAGAGGAGCTTCTTCAGTGGTATGA
AGAGAATGGAAAAGATAACCTTAAGTTGCTTCATGCAACTGAGAGATGCGCTTCCAGTATCATGCAAGCTATCGGTCACT
TCAAACTAGGGCCTAGTTTTTCTGTAAGAGATCTTGAATTCCCATATCCGAAGGTAGACACCATCAAGCCTGCAGATGTG
GTGGTGAAATTCTATGTTCTTTACGAGAAGTGGCGGAGGGGTGAGGTTCAGAAGTCTCCATCAGTTATACAATACTTGAA
AAGCATTACTGTAAGTACATTTCCTTGTCGAACTCTTAGATTAACCCGTTTAATGTTTGTTCATACCATTTTCTT---TT
TTAATATGCCATTTCTTTTGTACACAATTCCTTTTAACATTACTGATCCCAATGCTGCATGTTTGAACTGGGATCTGGAC
C-CATTTATGATTTCCGAGGACCAAATTTTGGTTGTTTTTTGAGCTTACTTTAGATCAATCGTCTATTTTGGATAGCTCC
AGAATGGTACACTGATACATCCTTGTGGAATGGAGCGGTCACTTCATGCATCCATTGATGCACTGAGTTCATGTTATGCT
GACAAACAAGGCCAAAAGTTCCGAGCATGGGTGGACCGACTTTTTACATCGCCGATCGGTACAAGTAACTGGTTGGTGAG
GTTTGACAACTGGGAAATGGAAGGTATACTCG---AAAAACTCTTCACATACTGAAGTTATTCCACGCCATCAGTTATCA
GTTTGTTCAAACCTTATTGACATCATTTTTCAATTGTAACGAGCCCTTTCCGTAATCTTGGGATGCGCCACAATTACTCA
TCTTGTGTCATCTCATTGATTTGTGTGTCGATGTTAATGCTTCTGTCACACTCAGGCGATGTGCAATATTGCTGCCGGAC
AACTCTTCTGCTGAATACAAAGGTAAATTCCCGTTCCCCCCCTGAAATTCTTGCGCACCGTGCGGTTGTATAGAATCTTT
TGCGCACAGTTTATGCTGAACTACCCAACTGCCTGAACTCGCAGCCTGAGACTTCAGAGGGCTTGGAACTGACACACATC
CACAAGACCTGGCTTGAAGGATACTCAGCTGGGAATGATCATACCTTCATCTTATAG-----------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>chr1A_1_TraesCS1A01G088600
CTTTGTTGTGCTCTGTCAAAAGGGTGTTCCCTCGCGGATTTCATCGACCAAGAAAGCGGCAAAAGTCAT--------CTC
AAACGGAAGCTTCGTCGCATTCCACATCCCACATTCCGCACTCCACTTGTACTACTCGGCTCCCCGCTCCCGGTCTTGGT
CGTCGTCATCCGCATCTCCCCACCCCGCCGCCTCACATCCTCCTCGGCTCCTCCTCCGA------CGACGAGCCGGGCCG
CCGGCCGCACGCCGCGCAGGCGAGGTAGGAGCTACTGTACCTGCCTGCCCTACAACTCATCC------------------
--------GCCACCTTGTGCGTTCCTCCTCTCCCTCCGGTCCTCCCTGAAACCATCATGCATTCAAGGTGTTTGGCCGGC
GGACCATTCCATACTCGCGTGGTTCTGTCGAGTGCGTTGTACTTGTACATTTCCCTGCGCCAAATCTGATCGATGTCAAT
CGTGCCGTGCTAGATGATTGGCTGGACACTCTATCCACAACGATTTCTCCTGGAAATTTGTTCTTACCAGTAAAGTCACG
CTCTTGC-TTGTTTTCTTGTGTGGATAAACCGTGGATGTTTGGGTCCCCTGTCTTGCTCTCATTTGCTAGGCTGCTGCTG
CCCGTTTCTTGTTTGCCATAGTTCTTTAAGTAATCTGTAGCCATTATTTTCTCGTGTATATGAATAAAACAGACCTTACC
GACGGATGACCGATGAAATAGTTTATTTAGTT----TTAAAAAAGCAGGAGAAATACTTGTCCTGCTTGTCTTGGTTCGC
TGTCTTGCTCTCACCTGCTGCTGACAGCTTCTCGTGTGCTATAGTTTAAAAATTTATCTGGAGCTATTATTTCCTT-TTA
CAAAAAATAAAGACCCTACCAGCAGATGACCGAGGAACAGTATAAAAGCAGGAGAAATACTTGTTGTTTCAGAGAAGTGT
CCAGGCAGACGCATCAAACTTCTCACCAGCCTCTGCAGCACTATTGCTCTGCAGGGACTTCTTCAGCTTCTCCGCGGCAA
GGAAGAATGGATAGGCTAGATGGCTCTGCCCGCCTTATGATCGTTTCGGATCTTGACCAGACGATGGTGGGTATCTCAGT
TCGATCCTTTGGTTTGCCCAGAAAGAAGGAACCTGGACTGTTGTGTCTGAACAATGTTTGACTTTTTGGATTGTGCACTT
GCAGGTTGATCACTGTGATCCAGAGAACTCGGCCTTGCTCCGTTTCGAGGCGCTCTGGGAGTCTGAGTACTCCCAGGATT
CTCTGCTGGTGTTCTCAACTGGAAGAACGCCGGTCAGTTACAAGGGTCTGAGGGAAAGAAAGCCTTTGCTCACACCGGAC
ATCACCATCATGTCTGTGGGCACTGTGATAGCATATGGCCAGGAGATGACTCCTGATGTTGGCTGGGAGGAATTTCTGAA
TAACAAGTGGGATAGGGATATTGTTGTTCAGGAGACAGCTAAGTTCCCTCATCTAAAGCCACAGGCATGTCCAATGAGTT
GCCTGTCTAGTTTTTCCTGGATTTTTTCAAATTTTACTACTAGCTGAACTAAGATATTTATGTTACTTTGTCTTTGTGCG
TTGCAGCCAGAGAGGAATCAGGGTCCTCATAAGGTCAGCTTCTTCGTCGACAAGCAGGGTGCTCATGAAGTGATTAATTA
TCTTCCTCAAAAACTGGAACAGCTTGGGGTAAGACAAGGCAGGCCTTGGTGACCTTCTCTTTCTCTG---TTCTTTTTGA
CAGGGTTTTGTTAAGATCA-AGTATTGCTTAGCGGTGTTTTATTGACTTCATTGCTTTCTTTCTGTGATCAGCTAGATGT
GAAGATAATCTATAGTAGCGGAGAGGCCCTAGATGTATTGCCACGAGGTGCAGGGAAAGGGCAAGCTCTTATATATTTAC
TCGAGAAGTTCAGTTTGAGCGGAAAACCACCAAGCAATGTTCTTGTGTGTGGTGACTCTGGCAATGATGCAGATTTATTC
AGCGTTCCATCTGCCTATGGTGTCATGGTCAGTGTATAAGCAGTTGCTTGGTTTCAGTGTATTTCATTGTTGACGATGAT
TACTATATAA-GCTTATTACAGAGTTTTGGAACCATATTCAGGTTAGCAATGCCCAAGAGGAGCTTCTTCAGTGGTATGA
AGAGAATGGAAAAGATAACCTTAAGTTGCTTCATGCAACTGAGAGATGCGCTTCCAGTATCATGCAAGCTATCGGTCACT
TCAAACTAGGGCCTAGTTTTTCTGTAAGAGATCTTGAATTCCCATATCCGAAGGTAGACACCATCAAGCCTGCAGATGTG
GTGGTGAAATTCTATGTTCTTTACGAGAAGTGGCGGAGGGGTGAGGTTCAGAAGTCTCCATCAGTTATACAATACTTGAA
AAGCATTACTGTAAGTACATTTCCTTGTCGAACTCTTAGATTAACCCGTTTAATGTTTGTTCATACCATTTTCTT---TT
TTAATATGCCATTTCTTTTGTACACAATTCCTTTTAACATTACTGATCCCAATGCTGCATGTTTGAACTGGGATCTGGAC
C-CATTTATGATTTCCGAGGACCAAATTTTGGTTGTTTTTTGAGCTTACTTTAGATCAATCGTCTATTTTGGATAGCTCC
AGAATGGTACACTGATACATCCTTGTGGAATGGAGCGGTCACTTCATGCATCCATTGATGCACTGAGTTCATGTTATGCT
GACAAACAAGGCCAAAAGTTCCGAGCATGGGTGGACCGACTTTTTACATCGCCGATCGGTACAAGTAACTGGTTGGTGAG
GTTTGACAACTGGGAAATGGAAGGTATACTCG---AAAAACTCTTCACATACTGAAGTTATTCCACGCCATCAGTTATCA
GTTTGTTCAAACCTTATTGACATCATTTTTCAATTGTAACGAGCCCTTTCCGTAATCTTGGGATGCGCCACAATTACTCA
TCTTGTGTCATCTCATTGATTTGTGTGTCGATGTTAATGCTTCTGTCACACTCAGGCGATGTGCAATATTGCTGCCGGAC
AACTCTTCTGCTGAATACAAAGGTAAATTCCCGTTCCCCCCCTGAAATTCTTGCGCACCGTGCGGTTGTATAGAATCTTT
TGCGCACAGTTTATGCTGAACTACCCAACTGCCTGAACTCGCAGCCTGAGACTTCAGAGGGCTTGGAACTGACACACATC
CACAAGACCTGGCTTGAAGGATACTCAGCTGGGAATGATCATACCTTCATCTTATAGATCATTTAACCACTCGCCATATA
TGCACGGACCCTCTCAGAGTCGGGATAGAATAACAAATGTACTGCTTCTTGTGTAAATTGATCTCTCGGCTGATTCAAAC
TACTGTACTGTTCTGACGCTCCCAGAGAGGGTCAATCTTCATGTTGATCAAATGCACTAATAAGAAATGTTCAATGGTTC
TGTCTCATGAACTTAATGAGATCCATAATTTAAGTTCTTACTGCACCAGAATGTTGTAATTACAGAGAATCATTTCTCGA
TGTACTAGATGCTCACGAGCTGGTGCATCTAGGGACAGAATCTTGCCCATGACAGTTGAAGCCGTTAATCTGTACCTGAT
AGATAACTCCAATGTTTCCTTAGGTTACCGAGGTTGATTTTTTTTTTTGGAAAACGACCCTTGTCTCTCTCAGCACTTTC
GTCCACATAAACATCAATGCCAGAAATTTCTGCCTTCATTGGTTTATAAATGACACCTTGCTTGTTCAACCTCTCAATGA
CTTTCTGCAAGAATTCGCAAAAAAAA-------AAAAAACTTTGTGCAAGGACAAATGCAACACATTCATGACATGTGCA
AATAGATGACACAAAATGAAATACAG------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------GACAAGACGTGCTTCCGCCGGCG--------------------CTGCGGGTGGG
CAGT--------GGATGGTCTGCAGGCTCC---GAGGAGGAAGATTCTCCTCCAAGCCGTGCTCGCTGGTCAAAAAGGTG
CCACATCATCACTGATGCCTGAAAAAAATTATGACACCAGCTCCACAGCCACTCCGTATAAAGGAATTGACAAACAAGTC
TACTGATCTAGCTGCCAGTGCCCTTCGAGCTAGCTGCCCAGAAATTCTTTTTGGCTCCGGTTGCGTTGTGTAGGGCATCA
GTGCCCAAAGACTAGAAATGAATTTGACATTGGTTTTGGTCTACTCCCTCCGGTCCTTTTTACTCTGCACATTGGATTTG
CCGAAAGTCAAGCTTTGCTAAGTTTGACCAAATTTATATTAGAAATTATTAGCAT
>chr1D_1
CTTTGTTGTT-TCTGTCAAAAGG-TGTTCCCTCGCGGATTTCATCGACGAAGAAAGCGGCAAAAGTCATCACAGGCGCTC
AAACGGAAGCTTCGCTGCAC-CCGCATTCCACATTCCGCACTCCACTTGTACGCACGCACTC----CTCCCGGTCTTGGT
CGTCGTCGTCCGCATCTCTCCACCCCGCCGCCTCACATCCTCCTCGGCTCCTCCGACGA------CGACGAGCCGGGCCG
GCGGCCGCACGCCGCTCAGGCGAGGTAGGGGCTACTGTACCTGCCTGCCCTACAACTCATCCGCGCCCCACCGCCACCCT
CGCCAGTCGCCACCTTGTACGTTCCTCCTCTTCCTCCCC--------GAAACCATCATGCATTCAAGGTGTTTGGCCGGC
GGACCATTCCATAGTCGCGTGGTTCCGTCGAGTGCGTTGTACTTGTACATTTCCCTGCGCCAAATCTGAGTGATATCAAT
CGTGC-----TAGATGATTGGCTGGACACTCTATCCACAACGATTTCTCCTGGAAAATTGTTCTTACCAGTAAAGTCACA
CTCTTGC-TTGTTTTCTTGTGTGGATAAACCGTGGATGTTTGGGTCCCCTGTCTTGCTCTTATTTGCTAGGCTGCTGCTG
CCCGTTTCTTGTTTGCCGTAGTTGTTTAACTAATCTGCAGCCATTA-TTCTCTCGCATGAAAAAAGT---AGACCTTACC
GACGGATGACCGATGAAATAGTTTAGTTTTAATATAT---AAAAGCAGGAGAAATACCTGTCCTGCTTGTCTTGGTTCGC
TGTCTTGCTCTCACCTGCTGCTGCCATTTTCTCGTGTGCTATAGTTTAAAATTTTATCTGGAGCTATTAGTTCCTTTTTA
CAAAAAATAAAGACCCTACCAGCAGATGACCGAGGAATAGTATAAAGGCAGGAGAAATACTTGTTGTTTCAGAGAAGTGC
CCAGGCAGACGCATCAAACTTCTCAGCAGCCTCTGCAGCACTATTGCTCTGCAGGGTCTTCTTCAGCTTCTGCGCCGCAA
GGAAGAATGGATAGGCTAGATGGCTCTGCGCGCCTTATGATCGTTTCGGATCTTGACCAGACGATGGTGGGTATCTCAGT
TCGATCCTTTGGTTTGCCCAGAAAGAACGAACCCGGACTGTTGTGTCTGAACAATGTTTGACTTTTTGGATTGTGCACTT
GCAGGTTGATCACTGTGATCCAGAGAACTCGGCCTTGCTCCGTTTCGAGGCGCTCTGGGAGTCTGAGTACTCCCAGGATT
CTCTGCTGGTGTTCTCAACTGGAAGAACGCCGGTCAGTTACAAGGGTCTGAGGAAAAGAAAGCCTTTGCTCACACCGGAC
ATCACCATCATGTCTGTGGGCACTGTGATAGCATATGGCCAGGAGATGACTCCGGATGTTGGCTGGGAGGAATTTCTGAA
TAACAAGTGGGATAGGGATATTGTTGTTCAGGAGACAGCTAAGTTCCCTCAGCTAAAGCCACAGGCATGTCCAATGAGTT
GCCTGTCTAGTTTTTCCTGGGTTTTTTCAAATTTTACTACTAGCTGAACTAAGATATTTATGTTACTTTGTCTTTGTGCG
TTGCAGCCAGAGAGGAATCAGGGTCCTCATAAGGTCAGCTTCTTCGTCGACAAGCAGGGTGCTCAGGAAGTGATTAATTA
TCTTCCTCAAAAACTGGAACAGCTTGGGGTAAGACAAGGCAGGCCTTGGTGACCTTCTCTTT-TCTG---TTCTTTTTGA
CAGGGTTTTGTTAAGATCA-AGTATTGCTTAGCGGTGTTTTATTGACTTCATTGCTTTCTTTCTGTGATCAGCTATATGT
GAAGATAATCTATAGTAGCGGAGAGGCCCTAGATGTATTGCCACGAGGTGCAGGGAAAGGGCAAGCTCTTATATATTTAC
TCGAGAAGTTCAGTTCGAGCGGAAAACCACCGAGCAATGTTCTTGTGTGTGGTGACTCTGGCAATGATGCAGATTTATTC
AGCGTTCCATCTGCCTATGGTGTCATGGTCAGTGCATAAGCAGTTGCTTGGTTTCAGTGTAGTTCATTGTTGACGATGAT
TACTATATAA-GCTTATTACAGAGTTTTGGAACCATATTCAGGTTAGCAATGCCCAAGAGGAGCTTCTTCAGTGGTATGA
AGAGAATGGAAAAGATAACCTTAAGTTGCTTCATGCAACTGAGAGATGCGCTTCCGGTATCATGCAAGCTATCGGTCACT
TCAAACTAGGGCCTAGTTTTTCTGTAAGAGATCTTGAATTCCCATATCTGAAGGTAGACACCATCAAGCCTGCAGATGTG
GTGGTGAAATTCTATGTTCTTTACGAGAAGTGGCGGAGGGGTGAGGTTCAGAAGTCTCCATCAGTTGTACAATACTTGAA
AAGCATTACTGTAAGTACATTTCCTTGTCGAACTCTTAGATTAACCCGTTTAATGTTTGTTCATACCATTC---T---TT
TTAATATGCCATTTCTTTTGTACACAATTCCTTTTAATATTACTGATCCCAATGCTGCACGTTCGAACTGGGATCTGGAC
C-CATTTATGATTTCCGAGGACCAAATTTTGGTTGTTTCTTGAGCTTACTTTAGATCAATCGTCTATTTTGGATAGCTCC
AGAATGGCACACTGATACATCCTTGTGGAATGGAGCGGTCACTTCATGCATCCATTGATGCACTGAGTTCATGCTATGGT
GACAAACAAGGCCAAAAGTTCCGAGCATGGGTGGACCGACTTTTTACATCGCCGATCAGTACAAGTAACTGGTTGGTGAG
GTTTGATAACTGGGAAATGGAAGGTATACTCG---AA---CTCTTCACATACTGAAGTTATTCCACGCCATCAGTTATCA
GTTTGTTCAAACCTTATTGACATCATTTTTCAATTGTAACGAGCCCTTTCCATAATCTTGGGATGCGCCACAATTACTCA
TCTTGTGTCATCTCATTGATTTGTGTGTCGATGCTAATGCTTCTGTCACACTCAGGTGATGTGCAATATTGCTGCCGGAC
AACTCTTCTGCTGAATACGAAGGTAAATTCTCGCTTTCCCCCGGAAATTCTTGCGCACCATGCAGCTATATAGAATCTTT
TGCACACAGTTTATGCTGAACTACCCAACTGCCTGAACTCGCAGCCTGAGACTCCAGAGGGCTTGGAACTGACACACATC
CACAAGACCTGGCTTGAAGGATACTCAGCTGGGAATGATCATACCTTCATCTTATAGATCATTTAACCACTCACCATATA
TGCACGGACCCTCTCAGAGTCGCAATAGATTTACAAATGTACTGGTTCTTGTGTAAATGGATCTCTCGGCTGATTCAAAC
TACTGTACTGTTCTGACGCTCCCAGAGAGGGTCAATCTTCATGTTGATCTCATGCACTAATAAGAAATGTTCAATGGTTC
TATCTCATGAACTTAATGAGATCCATAAGTTAAGTTCTTAGTGCACCAGAATGTTGTAATTACAGAGAATAATTTCTCGA
TGTACTTGATGCTCACAAGCTGGTGCATCTAGGAACAGAATCTTGCCCATGACAGTTGAAGCTGTTAATCTGTTCCTGAC
AGATAACTCCAATGTTTCCTTAGGTTGCCGAGGTTGA----TTTTTTTGGAAAACGACCCTTGTCTCTCTCAACACTTTC
GTCCACATAAACATCAATGCCAGAAATT-CTGCCTTAATTGGTTTGTAAATGACACCTTGCTTGTTCAACCTCTCAATGA
CTTTATGCAAGAATTCGCAAAAAATAAAAAAATAAAAAACTTTCTGCAAGGACAAATGCAACACATTCATGACATGTGCA
AATAGATGACACAAAATGAAATACTCCCTCCGTTCCTAAATATAAGTCTTTGGAAAGATTCCACTATGGACTACATACGG
AGCAAAATGAGTGAATATATACTCTAAATTGCATCTAGATACATCCGTATGTGGTCCAAAGTAAAATCTCTACAAAGACT
TATATTTAGGAACGGAGGGATTACAAGACAACACATGCTTCCGCCAGCGGCGTTGAGGCGACACCGAGGCTGCAGGTGGA
CGGTGGATCGGGGGATGGCCTGCAAGCTCC---GAGGAGGAAGATTCTCCTCCAAGCCGTGCTCGC--------------
--------------------------------------------------------------------------------
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-------------------------------------------------------
>chr1B_1
CTTTGTTGTT-TCTGTCAAAAGG-TGTTCCCTCGCGGATTTCGTCGACGAAGAAAGCGGCAAAAGTCATCACAAGCGCTC
AAACGGAAGCTTCGTTGCATTCCACATTCCACATTCCACACTCCACTTGTACT---CGGCTCTCCACTCCCGGTCTTGGT
CGTCGTCATCCGCATCTCTCCACCCCGCCGCCTCACATCCTCCTCGGCCCCTCCTCCTCCTCCCCCGACGAGCCGGGCCG
GCGGCCGCACGCCGCTCAGGCGAGGTAGGGGCTACTGTACCTGCCTGCCCTACAACTCATCCGCGCCCCACCC-------
------TCGCCACCTTGTACGTTCCTCCTCCTCC---CC--------GAAACCATCATGCATTCAAGGTGTTTGGCCGGC
GGACCATACGC-ACTCCCATGGTTCTGTCGAGTGCGCTCTACTTGTACATTTCCCTGCGCCAAATCTGATTGATATCAAC
CGTGC-----TAGATGATTGGTTGGACACTCTATCCACAACGATTTCTCCTGGAAAATTGTTCTTACCAGTAAAGTCACA
CTCTTGCTTTGTTTTCTTGTGTGGATAAACCGTGGATGTTTGGGTCCCCTGTCTTGCTCTTATTTGCTAGGCTGCTGCTG
CCCGTTTCTTGTTTGCCATAGTTGTTTAAGTAATCTGTAGCCATTA-TTTCTCGTGTATATGAATAAAACAGACCTTACC
GACGGATGACCGATGAAATAGTTTATTTAGTT----T---AAAAGCAGGAGAAATAGTTGTCGTGCTTGTCTTGGTTCGC
TGTCTTGCTCT-ACCTGCTGCTGACAGTTTCTCGTGTGCTATAGTTTAAAATTTTATCTGGAGCTATTATTTCCTTTT-A
CAAAAAATAAAGACCCTACCAGCAGATGACCGAGGAATAGTATAAAAGCAGGAGAAATGCTTGTTGTTTCAGAGAAGTGT
CCAGGCAGACGCATCAAACTTCTCAGCAGCCTCTGCAGCACTATTGCTCTGCAGGGTCTTCTTCAGCTTCTGCGCCGCAA
GGAAGAATGGACAGGCTAGATGGCTCTGCACGCCTTATGATCGTTTCGGATCTTGACCAGACGATGGTGGGTATCTCAGT
TCGATCCTTTGGTTTGTCCAGAAAGAACAAACCTGGACTGCTGTGTCTGAACAATGTTTGACTTTTTGGATTGTGCACTT
GCAGGTTGATCACTGTGATCCGGAGAACTCGGCCTTGCTCCGTTTCGAGGCGCTCTGGGAGTCTGAGTACTCCCAGGATT
CTCTGCTGGTGTTCTCGACTGGAAGAACGCCGGTTAGTTACAAGGCTCTGAGGGAAAGAAAGCCTTTGCTCACACCGGAC
ATCACCATCATGTCTGTGGGCACCGTGATAGCATATGGCCAGGAGATGACTCCTGATGTTGGCTGGGAGGAATTTCTGAA
TAACAAGTGGGATAGGGATATTGTTGTTCAGGAGACAGCTACGTTCCCTCAGCTAAAGCCACAGGCATGTCCAATGAGTT
GCCTGTCTAGTTTTTCCTGGGTTTTTTAAAATTTTATTACTAGCTGAACTAAGATATTTGTGTTACTTTGTCTTCGTGCG
GTGCAGCCAGAGAGGAATCAGGGTCCTCATAAGGTCAGTTTTTCCGTTGACAGGCAGGGTGCTCAGGAAGTGATTAATTC
ACTCCCTCAGAAACTGGAACAGCTTGGGGTAAGACAAGGCAACCCTTGGTGACCTTCTTTTTCTCTGTTCTTCTTTTTGA
CAGGGCTTTGTTAAGATCAGAGTATTGCTTA--GGTGTTTTATTGATTTCATTGCTTTCCTTTTGGGATCAGCTAGATGT
GAAGATAATCTATAGTAGCGGAGAAGCCCTAGATGTATTGCCACGAGGCGCAGGGAAAGGGCAAGCTCTTATATATTTAC
TCGAGAAGTTCAGTTCGTGCGCAAAATCACCGAACAATGTTCTTGTGTGTGGTGACTCTGGCAATGATGCAGATTTATTC
AGTGTTCCATCTGCCTATGGTGTCATGGTCAGTGTATAAG---TTGCTTGGTTTCAGTGTAGTTCATTAGTGATGATGAT
TACTCATATAGGCTTATTACAGAGTTTTGGAATCATATTCAGGTTAGCAATGCCCAAGAGGAGCTTCTTCAGTGGTATGA
AGAGAATGGAAAAGATAAGCCTAAGTTGCTTCATGCAACTGAGAGATGCGCTTCCGGTATCATGCAAACTATCGGTCACT
TCAAACTAGGACCTAGTTTTTCTGTAAGAGATCTTGAATTCCCATATCCAAAGGTAGACACCATCAAGCCTGCAGATGTA
GTGGTGAAGTTCTATGTTCTTTACGAGAAGTGGCGGAGGGGTGAGGTTCAGAAGTCTCCATCAGTTATACAATACTTGAA
AAGCATTACTGTAAGTACATTTCCTTGTCGAACTCTTGGATTAACCCATTCAATGTTTGTTCGTACCATTC---TGTCTT
TTAATATGCAATTTCTTTTGTACA-------TTTTAATATTACTGATCCCAATACTGCACGTTCGAATTGGGATCTGGAT
CTCATTTATGATTTCCGAGGAGCAAATTTTGGTTGTTTCTTGAGCTTACTTTAGATCAATCGTCTATTTTGGATAGCACC
AGAATGGCACACTGATTCATCCTTGTGGAATGGAGAGGTCACTTCATGCATCCGTTGACGCACTGAGTTCATGCTATGGT
GACAAACAAGGCAAAAAGTTCCGAGCATGGGTGGACCGACTTGTTACATCACCAATTGGTACAAGTAACTGGTTGGTGAG
GTTTGACAACTGGGAGATGGAAGGTATACTCGATGAA---CTCTTCACATAACAAAGTTATTCCACACCATCAGTTATCA
GTTTGTTCAAAGATGCTTGACATAATTTTTCAATTGTACCGAGCCCTTTCCGTAATCTTGGGATGCGCCACAATTACTCG
CCTTGTGTTATCTCATTGACTTGTGTGTCGATGTTATTGATTCTGTCACGCTCAGGTGGTGTGCAATATTGCTGCCGGAC
CACTCTTCTGCTGAATACAAAGGTAAATTCCCGCTTTCCCCCT-AAATTCTTGCGCACGGTGCGGTTGTATAGAATCTTT
TGCGCACAGTTTATGTTGAACTACCCAACTGCCTGAACTCGCAGCCTGAGACTCCAGAGGGCTTGGAACTGACACACATC
CACAAGACCTGGGTTGAAGGATACTCGGCTGGGAATGATCATACCTTCATCTTATAGATCATTTAACCACTCGCCATATA
TGCACAGACCCTCTCAGAGTCGGGATAGATTTACAAATGTACTGGTTCCTGTGTAAATGGATCTCTCGGCTGATTCAAAC
TACTGTACTGTTCTGACGCTCCCAGAGAGGGTCAATCTTCATGTTGATCTCATGCACCAATAAGAAATGTTCAATGGTTC
TATCTCATGAACTTAATGAGATCCATAAGTTAAGTTCTTACTGCACCAGTATGTTGTAATTACATATAATCATTTCGCGA
TGCACTTGATGCTCACGAGCTGGTGCATCTGGGGACAGAATCTTGCCCATGGCAGTTGAAGCTGTTAATCTGTTCCCGAC
AGATAAATCCAATGTTTCCTTAGGTTACCGAGGTTGATTTTTTTT---GGAAGACGCCCCTTGTCTCTCTCAACACTTTC
GTCCACATAAACATCAATGCCAGAAATTTCTGCCTTCATTGGTTTATAAATGACACCTTGCTTGTTCAACCTCTCAGTGA
CTTTCTGCAAGAATTTGCACCCAAAAAAA--------------CTGCATGGACAAATGCAA--CATTCATGACATGTGCG
AATAGATGACACAAAATGAAATACAG------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------GACAACATGTGCTTCCGCCAGCGGCGTTGAGGCGACGCCGAGGCTGCGGGTGGA
CGGTGGATCGGGGGATGGCCTGCAGGCTCCGAGGAGGAGGAAGATTCTCCTCCAAGCCGTGCTCGCCGGTC---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>SNPs
---------SS------------S------------------------S-------------------------------
---------------S-----------S-------------------------SSS------S--S--------------
------------------S-------------------------------------------------------------
S--------------S-------------S--------------------------------------------------
------------------S------------S-----SSSSSSSSSS---------------------------------
----------------------------------------------------------------------S---S-----
-----SSSSS----------------------------------------------S----------------------S
------------------------------------------------------------S-------------------
-----------------------S----------------------S---------------------------------
-------------------------------------SSS----------------------------------------
---------------------------S-----------------------S----------------------------
-------------------------------------S------------------------------------------
-------------------------S------------------------------S--------------S---S----
-----------------------------S--------------------------------------------------
---------------------------S----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------S----------------------------
--------------------S-----------------------------------------------------------
-----------------------------------------------------------------S--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------S---------------S------------------------------------------------
-------------------------------------------------------------S------------------
--------------------------------------------------------------------------------
-------------------------------------------------------S------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------SSSS------
-------------------------------------S---------------------S---S----------------
--------------------------------------S-----------------------------------------
-------S-----------------------------------------------------------------S----S-
--------------------------------------------------------------------------------
-------------------------------------SSS----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------S-----------------------
---------------------------------S-SS-------------------------------------------
-----------------------------------------------------S--------------------------
--------------------------------------------------------------------------------
-----------------------------S-S------------S-------------S---------------------
-------------------------------------------------SS-----------------------------
-S--------------------------S---------------------------------------------------
------S-------------------------------------------------------S----------S-----S
------------------------------------------------------------------------S-------
--------------------------------------------------------------------------------
-------------------------------------------S------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------S-------------S---------------------------------S
-S----------------S-----------------------------------------------S----SSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_108
--------------------------------------------------------------------------------
--------GCTTCGTCGCATTCCACATC----------------------------------------------------
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>reverse_1070
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-----------------------------CCGCCTTATGATCGTTTCGG-------------------------------
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>forward_1017
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-------------------------------------GCACTATTGCTCTGCAGGGA-----------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>reverse_2540
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------TGTTTGAACTGGGATCTGGAC
C-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>forward_1036
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------ACTTCTTCAGCTTCTCCGCG----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>reverse_2714
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------TTATGCT
GACAAACAAGGCCA------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>forward_2216
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------AACTGAGAGATGCGCTTCCA------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>reverse_4399
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------TG
CCGAAAGTCAAGCTTTGC-------------------------------------
