Multiple sequence alignment - TraesCS1A01G081900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G081900 chr1A 100.000 2399 0 0 1 2399 64896127 64898525 0.000000e+00 4431.0
1 TraesCS1A01G081900 chr1A 89.032 1167 83 16 465 1596 64836816 64835660 0.000000e+00 1404.0
2 TraesCS1A01G081900 chr1A 83.038 395 65 2 1004 1397 65234528 65234921 8.160000e-95 357.0
3 TraesCS1A01G081900 chr1A 98.750 160 2 0 1 160 64885686 64885527 3.900000e-73 285.0
4 TraesCS1A01G081900 chr1D 91.161 1120 77 8 480 1584 66389261 66390373 0.000000e+00 1500.0
5 TraesCS1A01G081900 chr1D 90.130 1155 73 12 480 1600 66354218 66353071 0.000000e+00 1463.0
6 TraesCS1A01G081900 chr1D 88.593 1201 92 26 354 1531 66323396 66322218 0.000000e+00 1417.0
7 TraesCS1A01G081900 chr1D 87.761 335 17 4 2075 2399 66321950 66321630 1.050000e-98 370.0
8 TraesCS1A01G081900 chr1D 82.908 392 65 2 1007 1397 66381967 66381577 3.790000e-93 351.0
9 TraesCS1A01G081900 chr1D 85.855 304 21 6 1679 1962 246953748 246953447 1.080000e-78 303.0
10 TraesCS1A01G081900 chr1D 78.571 392 51 20 1009 1397 66550351 66550712 6.670000e-56 228.0
11 TraesCS1A01G081900 chr1D 84.615 130 12 6 2065 2187 66352669 66352541 3.240000e-24 122.0
12 TraesCS1A01G081900 chr1D 85.915 71 7 2 168 235 66190454 66190524 3.310000e-09 73.1
13 TraesCS1A01G081900 chr1B 90.685 1095 73 11 480 1555 106904018 106905102 0.000000e+00 1430.0
14 TraesCS1A01G081900 chr1B 88.976 1143 78 14 480 1596 106817659 106816539 0.000000e+00 1369.0
15 TraesCS1A01G081900 chr1B 83.081 396 63 3 1004 1397 107130804 107131197 8.160000e-95 357.0
16 TraesCS1A01G081900 chr1B 95.031 161 8 0 1 161 326013350 326013190 1.100000e-63 254.0
17 TraesCS1A01G081900 chr5A 86.833 281 33 4 1683 1962 6572725 6572448 6.440000e-81 311.0
18 TraesCS1A01G081900 chr5A 85.479 303 25 3 1679 1962 630123782 630124084 5.010000e-77 298.0
19 TraesCS1A01G081900 chr5A 83.882 304 30 6 1679 1963 503494244 503493941 3.040000e-69 272.0
20 TraesCS1A01G081900 chr5A 95.625 160 7 0 1 160 617982746 617982587 8.510000e-65 257.0
21 TraesCS1A01G081900 chr5A 95.625 160 7 0 1 160 626239128 626238969 8.510000e-65 257.0
22 TraesCS1A01G081900 chr5A 88.542 96 11 0 1867 1962 399300135 399300230 1.510000e-22 117.0
23 TraesCS1A01G081900 chr4A 85.531 311 25 4 1672 1962 513327995 513328305 8.330000e-80 307.0
24 TraesCS1A01G081900 chr4A 85.149 303 26 3 1679 1962 2994411 2994713 2.330000e-75 292.0
25 TraesCS1A01G081900 chr3A 86.813 273 31 4 1693 1962 347663180 347662910 1.390000e-77 300.0
26 TraesCS1A01G081900 chr3A 95.625 160 7 0 1 160 514524366 514524207 8.510000e-65 257.0
27 TraesCS1A01G081900 chr7D 83.642 324 32 5 1658 1962 598495330 598495651 3.900000e-73 285.0
28 TraesCS1A01G081900 chr7D 79.433 141 23 5 1826 1966 340109499 340109365 7.060000e-16 95.3
29 TraesCS1A01G081900 chr2A 84.026 313 27 6 1673 1962 118447477 118447789 1.820000e-71 279.0
30 TraesCS1A01G081900 chr2A 83.660 306 30 4 1679 1965 154419218 154419522 1.090000e-68 270.0
31 TraesCS1A01G081900 chr2A 95.000 160 8 0 1 160 470628661 470628502 3.960000e-63 252.0
32 TraesCS1A01G081900 chr2D 83.495 309 31 4 1671 1960 366061121 366061428 1.090000e-68 270.0
33 TraesCS1A01G081900 chr5B 96.296 162 6 0 1 162 423216917 423216756 1.410000e-67 267.0
34 TraesCS1A01G081900 chr3D 91.710 193 14 2 1679 1870 81841564 81841373 1.410000e-67 267.0
35 TraesCS1A01G081900 chr6A 83.168 303 32 3 1679 1962 570032755 570033057 2.370000e-65 259.0
36 TraesCS1A01G081900 chr6A 83.883 273 26 2 1708 1962 613382916 613382644 6.620000e-61 244.0
37 TraesCS1A01G081900 chr6B 95.000 160 8 0 1 160 693578105 693578264 3.960000e-63 252.0
38 TraesCS1A01G081900 chr2B 95.541 157 7 0 1 157 708702079 708702235 3.960000e-63 252.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G081900 chr1A 64896127 64898525 2398 False 4431.0 4431 100.0000 1 2399 1 chr1A.!!$F1 2398
1 TraesCS1A01G081900 chr1A 64835660 64836816 1156 True 1404.0 1404 89.0320 465 1596 1 chr1A.!!$R1 1131
2 TraesCS1A01G081900 chr1D 66389261 66390373 1112 False 1500.0 1500 91.1610 480 1584 1 chr1D.!!$F2 1104
3 TraesCS1A01G081900 chr1D 66321630 66323396 1766 True 893.5 1417 88.1770 354 2399 2 chr1D.!!$R3 2045
4 TraesCS1A01G081900 chr1D 66352541 66354218 1677 True 792.5 1463 87.3725 480 2187 2 chr1D.!!$R4 1707
5 TraesCS1A01G081900 chr1B 106904018 106905102 1084 False 1430.0 1430 90.6850 480 1555 1 chr1B.!!$F1 1075
6 TraesCS1A01G081900 chr1B 106816539 106817659 1120 True 1369.0 1369 88.9760 480 1596 1 chr1B.!!$R1 1116

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
186 187 0.031917 TGAGCCCATGCCATTCCATT 60.032 50.0 0.0 0.0 38.69 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1959 2311 0.248843 CCCTCTCACAGTCTCAAGCC 59.751 60.0 0.0 0.0 0.0 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.052082 CTGGCAGGAAGTGTGGCG 61.052 66.667 6.61 0.00 43.28 5.69
21 22 2.662596 CAGGAAGTGTGGCGCCTA 59.337 61.111 29.70 14.39 0.00 3.93
22 23 1.003839 CAGGAAGTGTGGCGCCTAA 60.004 57.895 29.70 13.28 0.00 2.69
23 24 1.021390 CAGGAAGTGTGGCGCCTAAG 61.021 60.000 29.70 3.22 0.00 2.18
24 25 1.745489 GGAAGTGTGGCGCCTAAGG 60.745 63.158 29.70 0.00 0.00 2.69
25 26 1.745489 GAAGTGTGGCGCCTAAGGG 60.745 63.158 29.70 0.00 0.00 3.95
26 27 2.180159 GAAGTGTGGCGCCTAAGGGA 62.180 60.000 29.70 1.94 33.58 4.20
27 28 1.562672 AAGTGTGGCGCCTAAGGGAT 61.563 55.000 29.70 4.88 33.58 3.85
28 29 0.689745 AGTGTGGCGCCTAAGGGATA 60.690 55.000 29.70 0.07 33.58 2.59
29 30 0.249911 GTGTGGCGCCTAAGGGATAG 60.250 60.000 29.70 0.00 33.58 2.08
36 37 1.004440 CCTAAGGGATAGGCGCTGC 60.004 63.158 7.64 0.00 44.72 5.25
37 38 1.748403 CTAAGGGATAGGCGCTGCA 59.252 57.895 7.64 0.00 40.06 4.41
38 39 0.601311 CTAAGGGATAGGCGCTGCAC 60.601 60.000 7.64 0.00 40.06 4.57
39 40 1.334384 TAAGGGATAGGCGCTGCACA 61.334 55.000 7.64 0.00 40.06 4.57
40 41 2.590007 GGGATAGGCGCTGCACAG 60.590 66.667 7.64 0.00 0.00 3.66
61 62 4.436998 GGTGCGACGCCTAGCTGT 62.437 66.667 18.69 0.00 0.00 4.40
62 63 2.881352 GTGCGACGCCTAGCTGTC 60.881 66.667 18.69 0.00 0.00 3.51
65 66 4.554363 CGACGCCTAGCTGTCGGG 62.554 72.222 20.79 4.79 44.56 5.14
66 67 4.874977 GACGCCTAGCTGTCGGGC 62.875 72.222 0.00 4.06 42.18 6.13
89 90 2.832931 CACGAAAGGGTCAGCAGAG 58.167 57.895 0.00 0.00 0.00 3.35
90 91 0.034059 CACGAAAGGGTCAGCAGAGT 59.966 55.000 0.00 0.00 0.00 3.24
91 92 0.034059 ACGAAAGGGTCAGCAGAGTG 59.966 55.000 0.00 0.00 0.00 3.51
92 93 0.318441 CGAAAGGGTCAGCAGAGTGA 59.682 55.000 0.00 0.00 0.00 3.41
93 94 1.270305 CGAAAGGGTCAGCAGAGTGAA 60.270 52.381 0.00 0.00 0.00 3.18
94 95 2.806745 CGAAAGGGTCAGCAGAGTGAAA 60.807 50.000 0.00 0.00 0.00 2.69
95 96 3.416156 GAAAGGGTCAGCAGAGTGAAAT 58.584 45.455 0.00 0.00 0.00 2.17
96 97 3.515602 AAGGGTCAGCAGAGTGAAATT 57.484 42.857 0.00 0.00 0.00 1.82
97 98 3.515602 AGGGTCAGCAGAGTGAAATTT 57.484 42.857 0.00 0.00 0.00 1.82
98 99 3.837355 AGGGTCAGCAGAGTGAAATTTT 58.163 40.909 0.00 0.00 0.00 1.82
99 100 4.218312 AGGGTCAGCAGAGTGAAATTTTT 58.782 39.130 0.00 0.00 0.00 1.94
119 120 4.799564 TTTTGAAAGCAGGTCAGTTTGT 57.200 36.364 0.00 0.00 0.00 2.83
120 121 3.781079 TTGAAAGCAGGTCAGTTTGTG 57.219 42.857 0.00 0.00 0.00 3.33
121 122 2.997980 TGAAAGCAGGTCAGTTTGTGA 58.002 42.857 0.00 0.00 0.00 3.58
122 123 3.351740 TGAAAGCAGGTCAGTTTGTGAA 58.648 40.909 0.00 0.00 36.74 3.18
123 124 3.953612 TGAAAGCAGGTCAGTTTGTGAAT 59.046 39.130 0.00 0.00 36.74 2.57
124 125 4.402155 TGAAAGCAGGTCAGTTTGTGAATT 59.598 37.500 0.00 0.00 36.74 2.17
125 126 3.996150 AGCAGGTCAGTTTGTGAATTG 57.004 42.857 0.00 0.00 36.74 2.32
126 127 3.554934 AGCAGGTCAGTTTGTGAATTGA 58.445 40.909 0.00 0.00 36.74 2.57
127 128 4.147321 AGCAGGTCAGTTTGTGAATTGAT 58.853 39.130 0.00 0.00 36.74 2.57
128 129 4.586001 AGCAGGTCAGTTTGTGAATTGATT 59.414 37.500 0.00 0.00 36.74 2.57
129 130 5.069516 AGCAGGTCAGTTTGTGAATTGATTT 59.930 36.000 0.00 0.00 36.74 2.17
130 131 5.403466 GCAGGTCAGTTTGTGAATTGATTTC 59.597 40.000 0.00 0.00 36.74 2.17
131 132 6.736794 GCAGGTCAGTTTGTGAATTGATTTCT 60.737 38.462 0.00 0.00 36.74 2.52
132 133 6.639686 CAGGTCAGTTTGTGAATTGATTTCTG 59.360 38.462 0.00 0.00 36.74 3.02
133 134 5.403466 GGTCAGTTTGTGAATTGATTTCTGC 59.597 40.000 0.00 0.00 36.74 4.26
134 135 5.403466 GTCAGTTTGTGAATTGATTTCTGCC 59.597 40.000 0.00 0.00 36.74 4.85
135 136 5.302568 TCAGTTTGTGAATTGATTTCTGCCT 59.697 36.000 0.00 0.00 35.23 4.75
136 137 5.632347 CAGTTTGTGAATTGATTTCTGCCTC 59.368 40.000 0.00 0.00 35.23 4.70
137 138 5.302568 AGTTTGTGAATTGATTTCTGCCTCA 59.697 36.000 0.00 0.00 35.23 3.86
138 139 5.381174 TTGTGAATTGATTTCTGCCTCAG 57.619 39.130 0.00 0.00 35.23 3.35
139 140 3.760151 TGTGAATTGATTTCTGCCTCAGG 59.240 43.478 0.00 0.00 35.23 3.86
140 141 3.760684 GTGAATTGATTTCTGCCTCAGGT 59.239 43.478 0.00 0.00 35.23 4.00
141 142 4.012374 TGAATTGATTTCTGCCTCAGGTC 58.988 43.478 0.00 0.00 35.23 3.85
142 143 3.726557 ATTGATTTCTGCCTCAGGTCA 57.273 42.857 0.00 0.00 31.51 4.02
143 144 3.507162 TTGATTTCTGCCTCAGGTCAA 57.493 42.857 0.00 0.00 31.28 3.18
144 145 3.507162 TGATTTCTGCCTCAGGTCAAA 57.493 42.857 0.00 0.00 31.51 2.69
145 146 3.831323 TGATTTCTGCCTCAGGTCAAAA 58.169 40.909 0.00 0.00 31.51 2.44
146 147 4.214310 TGATTTCTGCCTCAGGTCAAAAA 58.786 39.130 0.00 0.00 31.51 1.94
147 148 4.834496 TGATTTCTGCCTCAGGTCAAAAAT 59.166 37.500 0.00 0.00 31.51 1.82
148 149 4.589216 TTTCTGCCTCAGGTCAAAAATG 57.411 40.909 0.00 0.00 31.51 2.32
149 150 3.228188 TCTGCCTCAGGTCAAAAATGT 57.772 42.857 0.00 0.00 31.51 2.71
150 151 2.886523 TCTGCCTCAGGTCAAAAATGTG 59.113 45.455 0.00 0.00 31.51 3.21
151 152 2.886523 CTGCCTCAGGTCAAAAATGTGA 59.113 45.455 0.00 0.00 0.00 3.58
152 153 3.499338 TGCCTCAGGTCAAAAATGTGAT 58.501 40.909 0.00 0.00 0.00 3.06
153 154 3.896888 TGCCTCAGGTCAAAAATGTGATT 59.103 39.130 0.00 0.00 0.00 2.57
154 155 4.344679 TGCCTCAGGTCAAAAATGTGATTT 59.655 37.500 0.00 0.00 0.00 2.17
155 156 4.925646 GCCTCAGGTCAAAAATGTGATTTC 59.074 41.667 0.00 0.00 0.00 2.17
156 157 5.279156 GCCTCAGGTCAAAAATGTGATTTCT 60.279 40.000 0.00 0.00 0.00 2.52
157 158 6.154445 CCTCAGGTCAAAAATGTGATTTCTG 58.846 40.000 0.00 0.00 0.00 3.02
158 159 5.531634 TCAGGTCAAAAATGTGATTTCTGC 58.468 37.500 0.00 0.00 0.00 4.26
159 160 4.687483 CAGGTCAAAAATGTGATTTCTGCC 59.313 41.667 0.00 0.00 0.00 4.85
160 161 3.674753 GGTCAAAAATGTGATTTCTGCCG 59.325 43.478 0.00 0.00 0.00 5.69
161 162 4.298332 GTCAAAAATGTGATTTCTGCCGT 58.702 39.130 0.00 0.00 0.00 5.68
162 163 4.148696 GTCAAAAATGTGATTTCTGCCGTG 59.851 41.667 0.00 0.00 0.00 4.94
163 164 4.037327 TCAAAAATGTGATTTCTGCCGTGA 59.963 37.500 0.00 0.00 0.00 4.35
164 165 3.559238 AAATGTGATTTCTGCCGTGAC 57.441 42.857 0.00 0.00 0.00 3.67
165 166 1.078709 ATGTGATTTCTGCCGTGACG 58.921 50.000 0.00 0.00 0.00 4.35
166 167 0.032815 TGTGATTTCTGCCGTGACGA 59.967 50.000 6.54 0.00 0.00 4.20
167 168 1.337728 TGTGATTTCTGCCGTGACGAT 60.338 47.619 6.54 0.00 0.00 3.73
168 169 1.061131 GTGATTTCTGCCGTGACGATG 59.939 52.381 6.54 0.00 0.00 3.84
169 170 1.067213 TGATTTCTGCCGTGACGATGA 60.067 47.619 6.54 0.00 0.00 2.92
170 171 1.590238 GATTTCTGCCGTGACGATGAG 59.410 52.381 6.54 0.00 0.00 2.90
171 172 1.014044 TTTCTGCCGTGACGATGAGC 61.014 55.000 6.54 1.01 0.00 4.26
172 173 2.835701 TTCTGCCGTGACGATGAGCC 62.836 60.000 6.54 0.00 0.00 4.70
173 174 4.451150 TGCCGTGACGATGAGCCC 62.451 66.667 6.54 0.00 0.00 5.19
174 175 4.451150 GCCGTGACGATGAGCCCA 62.451 66.667 6.54 0.00 0.00 5.36
175 176 2.501128 CCGTGACGATGAGCCCAT 59.499 61.111 6.54 0.00 35.29 4.00
176 177 1.884464 CCGTGACGATGAGCCCATG 60.884 63.158 6.54 0.00 32.09 3.66
177 178 2.528743 CGTGACGATGAGCCCATGC 61.529 63.158 0.00 0.00 32.09 4.06
178 179 2.182842 GTGACGATGAGCCCATGCC 61.183 63.158 0.00 0.00 38.69 4.40
179 180 2.190313 GACGATGAGCCCATGCCA 59.810 61.111 0.00 0.00 38.69 4.92
180 181 1.228063 GACGATGAGCCCATGCCAT 60.228 57.895 0.00 0.00 38.69 4.40
181 182 0.820891 GACGATGAGCCCATGCCATT 60.821 55.000 0.00 0.00 38.69 3.16
182 183 0.820891 ACGATGAGCCCATGCCATTC 60.821 55.000 0.00 0.00 38.69 2.67
183 184 1.521450 CGATGAGCCCATGCCATTCC 61.521 60.000 0.00 0.00 38.69 3.01
184 185 0.468585 GATGAGCCCATGCCATTCCA 60.469 55.000 0.00 0.00 38.69 3.53
185 186 0.190069 ATGAGCCCATGCCATTCCAT 59.810 50.000 0.00 0.00 38.69 3.41
186 187 0.031917 TGAGCCCATGCCATTCCATT 60.032 50.000 0.00 0.00 38.69 3.16
187 188 0.677842 GAGCCCATGCCATTCCATTC 59.322 55.000 0.00 0.00 38.69 2.67
188 189 0.761702 AGCCCATGCCATTCCATTCC 60.762 55.000 0.00 0.00 38.69 3.01
189 190 2.043625 CCCATGCCATTCCATTCCG 58.956 57.895 0.00 0.00 0.00 4.30
190 191 1.466025 CCCATGCCATTCCATTCCGG 61.466 60.000 0.00 0.00 0.00 5.14
191 192 0.756442 CCATGCCATTCCATTCCGGT 60.756 55.000 0.00 0.00 35.57 5.28
192 193 0.386476 CATGCCATTCCATTCCGGTG 59.614 55.000 0.00 0.00 35.57 4.94
193 194 1.394266 ATGCCATTCCATTCCGGTGC 61.394 55.000 0.00 0.00 35.57 5.01
194 195 2.051518 GCCATTCCATTCCGGTGCA 61.052 57.895 0.00 0.00 35.57 4.57
195 196 1.394266 GCCATTCCATTCCGGTGCAT 61.394 55.000 0.00 0.00 35.57 3.96
196 197 0.386476 CCATTCCATTCCGGTGCATG 59.614 55.000 0.00 2.57 35.57 4.06
197 198 0.249155 CATTCCATTCCGGTGCATGC 60.249 55.000 11.82 11.82 35.57 4.06
198 199 0.683828 ATTCCATTCCGGTGCATGCA 60.684 50.000 18.46 18.46 35.57 3.96
199 200 1.314534 TTCCATTCCGGTGCATGCAG 61.315 55.000 23.41 10.61 35.57 4.41
200 201 1.750018 CCATTCCGGTGCATGCAGA 60.750 57.895 23.41 12.70 0.00 4.26
201 202 1.721664 CCATTCCGGTGCATGCAGAG 61.722 60.000 23.41 17.61 0.00 3.35
202 203 1.452651 ATTCCGGTGCATGCAGAGG 60.453 57.895 26.99 26.99 0.00 3.69
203 204 4.783621 TCCGGTGCATGCAGAGGC 62.784 66.667 27.70 15.19 41.68 4.70
204 205 4.790962 CCGGTGCATGCAGAGGCT 62.791 66.667 23.41 0.00 41.91 4.58
205 206 3.200593 CGGTGCATGCAGAGGCTC 61.201 66.667 23.41 6.34 41.91 4.70
206 207 2.271497 GGTGCATGCAGAGGCTCT 59.729 61.111 23.41 12.24 41.91 4.09
207 208 2.113433 GGTGCATGCAGAGGCTCTG 61.113 63.158 34.76 34.76 46.90 3.35
218 219 3.228188 AGAGGCTCTGAGACCATAGAG 57.772 52.381 17.96 0.00 42.56 2.43
219 220 2.513738 AGAGGCTCTGAGACCATAGAGT 59.486 50.000 17.96 0.00 41.88 3.24
220 221 3.719479 AGAGGCTCTGAGACCATAGAGTA 59.281 47.826 17.96 0.00 41.88 2.59
221 222 4.072131 GAGGCTCTGAGACCATAGAGTAG 58.928 52.174 6.96 0.00 41.88 2.57
222 223 2.556622 GGCTCTGAGACCATAGAGTAGC 59.443 54.545 9.28 0.00 41.88 3.58
223 224 3.486383 GCTCTGAGACCATAGAGTAGCT 58.514 50.000 9.28 0.00 41.88 3.32
224 225 4.505918 GGCTCTGAGACCATAGAGTAGCTA 60.506 50.000 9.28 0.00 41.88 3.32
225 226 4.695455 GCTCTGAGACCATAGAGTAGCTAG 59.305 50.000 9.28 0.00 41.88 3.42
226 227 5.512404 GCTCTGAGACCATAGAGTAGCTAGA 60.512 48.000 9.28 0.00 41.88 2.43
227 228 6.696042 TCTGAGACCATAGAGTAGCTAGAT 57.304 41.667 0.00 0.00 31.33 1.98
228 229 6.472016 TCTGAGACCATAGAGTAGCTAGATG 58.528 44.000 0.00 0.00 31.33 2.90
229 230 6.271159 TCTGAGACCATAGAGTAGCTAGATGA 59.729 42.308 0.00 0.00 31.33 2.92
230 231 6.472016 TGAGACCATAGAGTAGCTAGATGAG 58.528 44.000 0.00 0.00 31.33 2.90
231 232 5.815581 AGACCATAGAGTAGCTAGATGAGG 58.184 45.833 0.00 0.00 31.33 3.86
232 233 5.550011 AGACCATAGAGTAGCTAGATGAGGA 59.450 44.000 0.00 0.00 31.33 3.71
233 234 6.044989 AGACCATAGAGTAGCTAGATGAGGAA 59.955 42.308 0.00 0.00 31.33 3.36
234 235 6.615617 ACCATAGAGTAGCTAGATGAGGAAA 58.384 40.000 0.00 0.00 31.33 3.13
235 236 6.492087 ACCATAGAGTAGCTAGATGAGGAAAC 59.508 42.308 0.00 0.00 31.33 2.78
236 237 6.071616 CCATAGAGTAGCTAGATGAGGAAACC 60.072 46.154 0.00 0.00 31.33 3.27
237 238 4.873010 AGAGTAGCTAGATGAGGAAACCA 58.127 43.478 0.00 0.00 0.00 3.67
238 239 4.892934 AGAGTAGCTAGATGAGGAAACCAG 59.107 45.833 0.00 0.00 0.00 4.00
239 240 4.615513 AGTAGCTAGATGAGGAAACCAGT 58.384 43.478 0.00 0.00 0.00 4.00
240 241 3.902881 AGCTAGATGAGGAAACCAGTG 57.097 47.619 0.00 0.00 0.00 3.66
241 242 2.503356 AGCTAGATGAGGAAACCAGTGG 59.497 50.000 7.91 7.91 0.00 4.00
242 243 2.420687 GCTAGATGAGGAAACCAGTGGG 60.421 54.545 15.21 0.00 41.29 4.61
243 244 0.329596 AGATGAGGAAACCAGTGGGC 59.670 55.000 15.21 2.05 37.90 5.36
244 245 0.038166 GATGAGGAAACCAGTGGGCA 59.962 55.000 15.21 2.01 37.90 5.36
245 246 0.038744 ATGAGGAAACCAGTGGGCAG 59.961 55.000 15.21 0.00 37.90 4.85
246 247 1.352622 TGAGGAAACCAGTGGGCAGT 61.353 55.000 15.21 0.00 37.90 4.40
247 248 0.890996 GAGGAAACCAGTGGGCAGTG 60.891 60.000 15.21 0.00 37.90 3.66
252 253 4.729918 CCAGTGGGCAGTGGGAGC 62.730 72.222 0.00 0.00 45.90 4.70
259 260 4.704833 GCAGTGGGAGCGCCTTGA 62.705 66.667 2.29 0.00 0.00 3.02
260 261 2.435586 CAGTGGGAGCGCCTTGAG 60.436 66.667 2.29 0.00 0.00 3.02
261 262 4.400961 AGTGGGAGCGCCTTGAGC 62.401 66.667 2.29 0.00 38.52 4.26
263 264 3.640407 TGGGAGCGCCTTGAGCTT 61.640 61.111 2.29 0.00 46.13 3.74
264 265 2.821810 GGGAGCGCCTTGAGCTTC 60.822 66.667 2.29 0.00 46.13 3.86
265 266 2.267324 GGAGCGCCTTGAGCTTCT 59.733 61.111 2.29 0.00 46.13 2.85
266 267 1.813337 GGAGCGCCTTGAGCTTCTC 60.813 63.158 2.29 0.00 46.13 2.87
267 268 1.217779 GAGCGCCTTGAGCTTCTCT 59.782 57.895 2.29 0.00 46.13 3.10
268 269 0.805711 GAGCGCCTTGAGCTTCTCTC 60.806 60.000 2.29 0.00 46.13 3.20
269 270 1.217779 GCGCCTTGAGCTTCTCTCT 59.782 57.895 0.00 0.00 42.38 3.10
270 271 1.083242 GCGCCTTGAGCTTCTCTCTG 61.083 60.000 0.00 0.00 42.38 3.35
271 272 0.459934 CGCCTTGAGCTTCTCTCTGG 60.460 60.000 0.00 0.00 42.38 3.86
272 273 0.744057 GCCTTGAGCTTCTCTCTGGC 60.744 60.000 11.34 11.34 46.21 4.85
273 274 0.459934 CCTTGAGCTTCTCTCTGGCG 60.460 60.000 0.00 0.00 42.38 5.69
274 275 1.079543 TTGAGCTTCTCTCTGGCGC 60.080 57.895 0.00 0.00 42.38 6.53
275 276 1.539560 TTGAGCTTCTCTCTGGCGCT 61.540 55.000 7.64 0.00 42.38 5.92
276 277 1.217779 GAGCTTCTCTCTGGCGCTT 59.782 57.895 7.64 0.00 38.78 4.68
277 278 1.079266 AGCTTCTCTCTGGCGCTTG 60.079 57.895 7.64 0.00 0.00 4.01
278 279 1.375268 GCTTCTCTCTGGCGCTTGT 60.375 57.895 7.64 0.00 0.00 3.16
279 280 1.633852 GCTTCTCTCTGGCGCTTGTG 61.634 60.000 7.64 1.49 0.00 3.33
280 281 1.633852 CTTCTCTCTGGCGCTTGTGC 61.634 60.000 7.64 0.00 0.00 4.57
281 282 2.047465 CTCTCTGGCGCTTGTGCT 60.047 61.111 7.64 0.00 36.97 4.40
282 283 2.047844 TCTCTGGCGCTTGTGCTC 60.048 61.111 7.64 0.00 36.97 4.26
283 284 3.485431 CTCTGGCGCTTGTGCTCG 61.485 66.667 7.64 0.00 36.97 5.03
291 292 3.716006 CTTGTGCTCGCGTGGGTG 61.716 66.667 5.77 0.00 0.00 4.61
292 293 4.228567 TTGTGCTCGCGTGGGTGA 62.229 61.111 5.77 0.00 0.00 4.02
299 300 2.572191 CTCGCGTGGGTGAGTAATAA 57.428 50.000 5.77 0.00 44.09 1.40
300 301 2.883574 CTCGCGTGGGTGAGTAATAAA 58.116 47.619 5.77 0.00 44.09 1.40
301 302 3.454375 CTCGCGTGGGTGAGTAATAAAT 58.546 45.455 5.77 0.00 44.09 1.40
302 303 3.450578 TCGCGTGGGTGAGTAATAAATC 58.549 45.455 5.77 0.00 0.00 2.17
303 304 2.217847 CGCGTGGGTGAGTAATAAATCG 59.782 50.000 0.00 0.00 0.00 3.34
304 305 2.033151 GCGTGGGTGAGTAATAAATCGC 60.033 50.000 0.00 0.00 0.00 4.58
305 306 3.191669 CGTGGGTGAGTAATAAATCGCA 58.808 45.455 0.00 0.00 0.00 5.10
306 307 3.619483 CGTGGGTGAGTAATAAATCGCAA 59.381 43.478 0.00 0.00 0.00 4.85
307 308 4.272504 CGTGGGTGAGTAATAAATCGCAAT 59.727 41.667 0.00 0.00 0.00 3.56
308 309 5.510671 GTGGGTGAGTAATAAATCGCAATG 58.489 41.667 0.00 0.00 0.00 2.82
309 310 4.036262 TGGGTGAGTAATAAATCGCAATGC 59.964 41.667 0.00 0.00 0.00 3.56
310 311 4.036262 GGGTGAGTAATAAATCGCAATGCA 59.964 41.667 5.91 0.00 0.00 3.96
311 312 4.970003 GGTGAGTAATAAATCGCAATGCAC 59.030 41.667 5.91 0.00 0.00 4.57
312 313 5.220854 GGTGAGTAATAAATCGCAATGCACT 60.221 40.000 5.91 0.00 0.00 4.40
313 314 5.904080 GTGAGTAATAAATCGCAATGCACTC 59.096 40.000 5.91 8.46 0.00 3.51
314 315 5.083136 AGTAATAAATCGCAATGCACTCG 57.917 39.130 5.91 0.00 0.00 4.18
315 316 2.389713 ATAAATCGCAATGCACTCGC 57.610 45.000 5.91 0.00 39.24 5.03
316 317 0.376852 TAAATCGCAATGCACTCGCC 59.623 50.000 5.91 0.00 37.32 5.54
317 318 2.270297 AAATCGCAATGCACTCGCCC 62.270 55.000 5.91 0.00 37.32 6.13
320 321 4.465512 GCAATGCACTCGCCCGTG 62.466 66.667 0.00 0.00 37.32 4.94
321 322 2.741985 CAATGCACTCGCCCGTGA 60.742 61.111 4.36 0.00 37.06 4.35
322 323 2.031919 AATGCACTCGCCCGTGAA 59.968 55.556 4.36 0.00 37.06 3.18
323 324 2.325082 AATGCACTCGCCCGTGAAC 61.325 57.895 4.36 0.00 37.06 3.18
324 325 2.731691 AATGCACTCGCCCGTGAACT 62.732 55.000 4.36 0.00 37.06 3.01
325 326 1.884075 ATGCACTCGCCCGTGAACTA 61.884 55.000 4.36 0.00 37.06 2.24
326 327 1.153628 GCACTCGCCCGTGAACTAT 60.154 57.895 4.36 0.00 37.06 2.12
327 328 1.146358 GCACTCGCCCGTGAACTATC 61.146 60.000 4.36 0.00 37.06 2.08
328 329 0.456221 CACTCGCCCGTGAACTATCT 59.544 55.000 0.00 0.00 37.06 1.98
329 330 0.739561 ACTCGCCCGTGAACTATCTC 59.260 55.000 0.00 0.00 0.00 2.75
330 331 1.025812 CTCGCCCGTGAACTATCTCT 58.974 55.000 0.00 0.00 0.00 3.10
331 332 1.002251 CTCGCCCGTGAACTATCTCTC 60.002 57.143 0.00 0.00 0.00 3.20
332 333 1.025812 CGCCCGTGAACTATCTCTCT 58.974 55.000 0.00 0.00 0.00 3.10
333 334 1.002251 CGCCCGTGAACTATCTCTCTC 60.002 57.143 0.00 0.00 0.00 3.20
334 335 2.303175 GCCCGTGAACTATCTCTCTCT 58.697 52.381 0.00 0.00 0.00 3.10
335 336 2.292292 GCCCGTGAACTATCTCTCTCTC 59.708 54.545 0.00 0.00 0.00 3.20
336 337 3.815809 CCCGTGAACTATCTCTCTCTCT 58.184 50.000 0.00 0.00 0.00 3.10
337 338 4.744259 GCCCGTGAACTATCTCTCTCTCTA 60.744 50.000 0.00 0.00 0.00 2.43
338 339 5.556915 CCCGTGAACTATCTCTCTCTCTAT 58.443 45.833 0.00 0.00 0.00 1.98
339 340 5.642063 CCCGTGAACTATCTCTCTCTCTATC 59.358 48.000 0.00 0.00 0.00 2.08
340 341 6.464222 CCGTGAACTATCTCTCTCTCTATCT 58.536 44.000 0.00 0.00 0.00 1.98
341 342 6.590292 CCGTGAACTATCTCTCTCTCTATCTC 59.410 46.154 0.00 0.00 0.00 2.75
342 343 7.151976 CGTGAACTATCTCTCTCTCTATCTCA 58.848 42.308 0.00 0.00 0.00 3.27
343 344 7.116376 CGTGAACTATCTCTCTCTCTATCTCAC 59.884 44.444 0.00 0.00 0.00 3.51
344 345 8.150945 GTGAACTATCTCTCTCTCTATCTCACT 58.849 40.741 0.00 0.00 0.00 3.41
345 346 9.374711 TGAACTATCTCTCTCTCTATCTCACTA 57.625 37.037 0.00 0.00 0.00 2.74
349 350 9.823647 CTATCTCTCTCTCTATCTCACTAATCC 57.176 40.741 0.00 0.00 0.00 3.01
350 351 7.016153 TCTCTCTCTCTATCTCACTAATCCC 57.984 44.000 0.00 0.00 0.00 3.85
351 352 6.012858 TCTCTCTCTCTATCTCACTAATCCCC 60.013 46.154 0.00 0.00 0.00 4.81
352 353 4.912586 TCTCTCTATCTCACTAATCCCCG 58.087 47.826 0.00 0.00 0.00 5.73
364 365 4.966787 TCCCCGCAACAGGCAACC 62.967 66.667 0.00 0.00 45.17 3.77
403 404 0.045469 ATTCCCCTTCCTCTGCTCCT 59.955 55.000 0.00 0.00 0.00 3.69
413 414 1.958902 CTCTGCTCCTCCCAGTCTGC 61.959 65.000 0.00 0.00 0.00 4.26
414 415 3.368190 CTGCTCCTCCCAGTCTGCG 62.368 68.421 0.00 0.00 0.00 5.18
415 416 3.386237 GCTCCTCCCAGTCTGCGT 61.386 66.667 0.00 0.00 0.00 5.24
416 417 2.888863 CTCCTCCCAGTCTGCGTC 59.111 66.667 0.00 0.00 0.00 5.19
417 418 1.680651 CTCCTCCCAGTCTGCGTCT 60.681 63.158 0.00 0.00 0.00 4.18
418 419 1.943116 CTCCTCCCAGTCTGCGTCTG 61.943 65.000 0.00 0.00 0.00 3.51
429 430 4.070552 GCGTCTGCCCGTCCTCTT 62.071 66.667 0.00 0.00 33.98 2.85
436 437 3.032667 GCCCGTCCTCTTCCCTTCC 62.033 68.421 0.00 0.00 0.00 3.46
438 439 2.368011 CCGTCCTCTTCCCTTCCCC 61.368 68.421 0.00 0.00 0.00 4.81
439 440 2.368011 CGTCCTCTTCCCTTCCCCC 61.368 68.421 0.00 0.00 0.00 5.40
440 441 1.083141 GTCCTCTTCCCTTCCCCCT 59.917 63.158 0.00 0.00 0.00 4.79
441 442 0.550393 GTCCTCTTCCCTTCCCCCTT 60.550 60.000 0.00 0.00 0.00 3.95
442 443 0.253207 TCCTCTTCCCTTCCCCCTTC 60.253 60.000 0.00 0.00 0.00 3.46
443 444 0.550147 CCTCTTCCCTTCCCCCTTCA 60.550 60.000 0.00 0.00 0.00 3.02
444 445 0.915364 CTCTTCCCTTCCCCCTTCAG 59.085 60.000 0.00 0.00 0.00 3.02
445 446 0.196118 TCTTCCCTTCCCCCTTCAGT 59.804 55.000 0.00 0.00 0.00 3.41
446 447 1.439543 TCTTCCCTTCCCCCTTCAGTA 59.560 52.381 0.00 0.00 0.00 2.74
448 449 0.044244 TCCCTTCCCCCTTCAGTAGG 59.956 60.000 0.00 0.00 44.33 3.18
731 752 1.362406 CGGCTCGCCTTTTTCCTCTC 61.362 60.000 6.35 0.00 0.00 3.20
1029 1077 4.124943 CAGCTGCTGGGATGGGCT 62.125 66.667 21.71 0.00 0.00 5.19
1371 1419 0.889186 GCAAGAACCACCACCACGAT 60.889 55.000 0.00 0.00 0.00 3.73
1402 1450 2.872732 AGGTTCACCTCGACTGAGTAA 58.127 47.619 0.00 0.00 44.77 2.24
1477 1529 2.534042 TCCAGTAACTCTGCCTAGCT 57.466 50.000 0.00 0.00 42.38 3.32
1478 1530 3.664551 TCCAGTAACTCTGCCTAGCTA 57.335 47.619 0.00 0.00 42.38 3.32
1496 1548 2.027377 GCTATAGCTGCATCCTGTCCAT 60.027 50.000 17.75 0.00 38.21 3.41
1598 1942 8.498054 AAGTTTATGTCTGATTATCACTGTGG 57.502 34.615 8.11 0.00 0.00 4.17
1600 1944 4.767578 ATGTCTGATTATCACTGTGGCT 57.232 40.909 8.11 0.00 0.00 4.75
1601 1945 5.876651 ATGTCTGATTATCACTGTGGCTA 57.123 39.130 8.11 0.00 0.00 3.93
1603 1947 4.711846 TGTCTGATTATCACTGTGGCTACT 59.288 41.667 8.11 0.00 0.00 2.57
1604 1948 5.046529 GTCTGATTATCACTGTGGCTACTG 58.953 45.833 8.11 5.53 0.00 2.74
1605 1949 4.711846 TCTGATTATCACTGTGGCTACTGT 59.288 41.667 8.11 6.92 39.24 3.55
1607 1951 5.902681 TGATTATCACTGTGGCTACTGTAC 58.097 41.667 12.27 0.00 36.93 2.90
1609 1953 6.831868 TGATTATCACTGTGGCTACTGTACTA 59.168 38.462 12.27 4.96 36.93 1.82
1611 1955 7.655521 TTATCACTGTGGCTACTGTACTATT 57.344 36.000 12.27 0.04 36.93 1.73
1612 1956 8.756486 TTATCACTGTGGCTACTGTACTATTA 57.244 34.615 12.27 0.00 36.93 0.98
1616 1960 7.498239 TCACTGTGGCTACTGTACTATTAGTAG 59.502 40.741 12.27 11.82 45.75 2.57
1617 1961 7.282675 CACTGTGGCTACTGTACTATTAGTAGT 59.717 40.741 12.27 3.20 45.12 2.73
1619 1963 8.899427 TGTGGCTACTGTACTATTAGTAGTAG 57.101 38.462 20.25 20.25 45.12 2.57
1653 1997 6.176183 AGATTAGTATATGCATGCTTGGGAC 58.824 40.000 20.33 11.80 0.00 4.46
1667 2019 6.260700 TGCTTGGGACTATATATTTGTGGT 57.739 37.500 0.00 0.00 0.00 4.16
1669 2021 5.473504 GCTTGGGACTATATATTTGTGGTGG 59.526 44.000 0.00 0.00 0.00 4.61
1670 2022 6.584471 TTGGGACTATATATTTGTGGTGGT 57.416 37.500 0.00 0.00 0.00 4.16
1671 2023 6.182507 TGGGACTATATATTTGTGGTGGTC 57.817 41.667 0.00 0.00 0.00 4.02
1672 2024 5.908831 TGGGACTATATATTTGTGGTGGTCT 59.091 40.000 0.00 0.00 0.00 3.85
1673 2025 6.388689 TGGGACTATATATTTGTGGTGGTCTT 59.611 38.462 0.00 0.00 0.00 3.01
1674 2026 7.092174 TGGGACTATATATTTGTGGTGGTCTTT 60.092 37.037 0.00 0.00 0.00 2.52
1675 2027 7.228706 GGGACTATATATTTGTGGTGGTCTTTG 59.771 40.741 0.00 0.00 0.00 2.77
1676 2028 7.990886 GGACTATATATTTGTGGTGGTCTTTGA 59.009 37.037 0.00 0.00 0.00 2.69
1677 2029 9.561069 GACTATATATTTGTGGTGGTCTTTGAT 57.439 33.333 0.00 0.00 0.00 2.57
1678 2030 9.342308 ACTATATATTTGTGGTGGTCTTTGATG 57.658 33.333 0.00 0.00 0.00 3.07
1679 2031 3.665745 ATTTGTGGTGGTCTTTGATGC 57.334 42.857 0.00 0.00 0.00 3.91
1680 2032 1.327303 TTGTGGTGGTCTTTGATGCC 58.673 50.000 0.00 0.00 0.00 4.40
1681 2033 0.478072 TGTGGTGGTCTTTGATGCCT 59.522 50.000 0.00 0.00 0.00 4.75
1682 2034 1.133513 TGTGGTGGTCTTTGATGCCTT 60.134 47.619 0.00 0.00 0.00 4.35
1683 2035 1.963515 GTGGTGGTCTTTGATGCCTTT 59.036 47.619 0.00 0.00 0.00 3.11
1684 2036 2.365293 GTGGTGGTCTTTGATGCCTTTT 59.635 45.455 0.00 0.00 0.00 2.27
1685 2037 3.037549 TGGTGGTCTTTGATGCCTTTTT 58.962 40.909 0.00 0.00 0.00 1.94
1686 2038 3.181467 TGGTGGTCTTTGATGCCTTTTTG 60.181 43.478 0.00 0.00 0.00 2.44
1687 2039 3.392882 GTGGTCTTTGATGCCTTTTTGG 58.607 45.455 0.00 0.00 39.35 3.28
1688 2040 3.037549 TGGTCTTTGATGCCTTTTTGGT 58.962 40.909 0.00 0.00 38.35 3.67
1689 2041 3.454082 TGGTCTTTGATGCCTTTTTGGTT 59.546 39.130 0.00 0.00 38.35 3.67
1690 2042 4.058124 GGTCTTTGATGCCTTTTTGGTTC 58.942 43.478 0.00 0.00 38.35 3.62
1691 2043 4.442753 GGTCTTTGATGCCTTTTTGGTTCA 60.443 41.667 0.00 0.00 38.35 3.18
1692 2044 5.299949 GTCTTTGATGCCTTTTTGGTTCAT 58.700 37.500 0.00 0.00 38.35 2.57
1693 2045 6.454795 GTCTTTGATGCCTTTTTGGTTCATA 58.545 36.000 0.00 0.00 38.35 2.15
1694 2046 6.587608 GTCTTTGATGCCTTTTTGGTTCATAG 59.412 38.462 0.00 0.00 38.35 2.23
1695 2047 5.404466 TTGATGCCTTTTTGGTTCATAGG 57.596 39.130 0.00 0.00 38.35 2.57
1696 2048 4.671831 TGATGCCTTTTTGGTTCATAGGA 58.328 39.130 0.00 0.00 38.35 2.94
1697 2049 5.271598 TGATGCCTTTTTGGTTCATAGGAT 58.728 37.500 0.00 0.00 38.35 3.24
1698 2050 6.430864 TGATGCCTTTTTGGTTCATAGGATA 58.569 36.000 0.00 0.00 38.35 2.59
1699 2051 6.547141 TGATGCCTTTTTGGTTCATAGGATAG 59.453 38.462 0.00 0.00 38.35 2.08
1700 2052 5.200483 TGCCTTTTTGGTTCATAGGATAGG 58.800 41.667 0.00 0.00 38.35 2.57
1701 2053 5.044476 TGCCTTTTTGGTTCATAGGATAGGA 60.044 40.000 0.00 0.00 38.35 2.94
1702 2054 6.071320 GCCTTTTTGGTTCATAGGATAGGAT 58.929 40.000 0.00 0.00 38.35 3.24
1703 2055 6.551227 GCCTTTTTGGTTCATAGGATAGGATT 59.449 38.462 0.00 0.00 38.35 3.01
1704 2056 7.724061 GCCTTTTTGGTTCATAGGATAGGATTA 59.276 37.037 0.00 0.00 38.35 1.75
1705 2057 9.813826 CCTTTTTGGTTCATAGGATAGGATTAT 57.186 33.333 0.00 0.00 28.27 1.28
1711 2063 9.046846 TGGTTCATAGGATAGGATTATTGTAGG 57.953 37.037 0.00 0.00 28.27 3.18
1712 2064 9.268282 GGTTCATAGGATAGGATTATTGTAGGA 57.732 37.037 0.00 0.00 28.27 2.94
1735 2087 9.413734 AGGAATAGGAATTTTGTAGGAAATGAG 57.586 33.333 0.00 0.00 30.06 2.90
1736 2088 9.408648 GGAATAGGAATTTTGTAGGAAATGAGA 57.591 33.333 0.00 0.00 30.06 3.27
1740 2092 8.286191 AGGAATTTTGTAGGAAATGAGATGAC 57.714 34.615 0.00 0.00 30.06 3.06
1741 2093 7.890127 AGGAATTTTGTAGGAAATGAGATGACA 59.110 33.333 0.00 0.00 30.06 3.58
1742 2094 8.689972 GGAATTTTGTAGGAAATGAGATGACAT 58.310 33.333 0.00 0.00 30.06 3.06
1779 2131 7.747155 CTATGAGTAGGAATAGGAAACGAGA 57.253 40.000 0.00 0.00 0.00 4.04
1780 2132 8.343168 CTATGAGTAGGAATAGGAAACGAGAT 57.657 38.462 0.00 0.00 0.00 2.75
1781 2133 9.451002 CTATGAGTAGGAATAGGAAACGAGATA 57.549 37.037 0.00 0.00 0.00 1.98
1782 2134 8.887264 ATGAGTAGGAATAGGAAACGAGATAT 57.113 34.615 0.00 0.00 0.00 1.63
1783 2135 8.338072 TGAGTAGGAATAGGAAACGAGATATC 57.662 38.462 0.00 0.00 0.00 1.63
1784 2136 7.942894 TGAGTAGGAATAGGAAACGAGATATCA 59.057 37.037 5.32 0.00 0.00 2.15
1785 2137 8.887264 AGTAGGAATAGGAAACGAGATATCAT 57.113 34.615 5.32 0.00 0.00 2.45
1786 2138 9.315363 AGTAGGAATAGGAAACGAGATATCATT 57.685 33.333 5.32 0.00 0.00 2.57
1787 2139 9.930693 GTAGGAATAGGAAACGAGATATCATTT 57.069 33.333 5.32 2.60 0.00 2.32
1788 2140 8.839310 AGGAATAGGAAACGAGATATCATTTG 57.161 34.615 5.32 0.00 0.00 2.32
1789 2141 8.432805 AGGAATAGGAAACGAGATATCATTTGT 58.567 33.333 5.32 0.00 0.00 2.83
1790 2142 9.057089 GGAATAGGAAACGAGATATCATTTGTT 57.943 33.333 5.32 0.00 0.00 2.83
1793 2145 7.921786 AGGAAACGAGATATCATTTGTTTGA 57.078 32.000 12.70 0.00 30.40 2.69
1794 2146 7.752695 AGGAAACGAGATATCATTTGTTTGAC 58.247 34.615 12.70 7.53 30.40 3.18
1795 2147 7.390440 AGGAAACGAGATATCATTTGTTTGACA 59.610 33.333 12.70 0.00 30.40 3.58
1796 2148 8.184192 GGAAACGAGATATCATTTGTTTGACAT 58.816 33.333 12.70 0.00 30.40 3.06
1797 2149 9.214953 GAAACGAGATATCATTTGTTTGACATC 57.785 33.333 12.70 0.00 31.12 3.06
1798 2150 7.848223 ACGAGATATCATTTGTTTGACATCA 57.152 32.000 5.32 0.00 33.00 3.07
1799 2151 8.267620 ACGAGATATCATTTGTTTGACATCAA 57.732 30.769 5.32 0.00 33.00 2.57
1800 2152 8.729756 ACGAGATATCATTTGTTTGACATCAAA 58.270 29.630 5.32 2.89 42.90 2.69
1801 2153 9.218359 CGAGATATCATTTGTTTGACATCAAAG 57.782 33.333 7.30 0.00 45.36 2.77
1827 2179 9.965824 GAAAATTTTTCATTGAGTCTAGGTTCA 57.034 29.630 15.37 0.00 0.00 3.18
1863 2215 9.793259 TTCTATGAAATGTGGATAATAGGAACC 57.207 33.333 0.00 0.00 0.00 3.62
1864 2216 8.944138 TCTATGAAATGTGGATAATAGGAACCA 58.056 33.333 0.00 0.00 0.00 3.67
1872 2224 6.529084 TGGATAATAGGAACCACATCCATT 57.471 37.500 9.82 0.00 42.27 3.16
1873 2225 6.542821 TGGATAATAGGAACCACATCCATTC 58.457 40.000 9.82 0.00 42.27 2.67
1874 2226 5.946377 GGATAATAGGAACCACATCCATTCC 59.054 44.000 0.00 0.00 42.27 3.01
1879 2231 4.437682 GGAACCACATCCATTCCTATGA 57.562 45.455 0.00 0.00 39.11 2.15
1880 2232 4.792068 GGAACCACATCCATTCCTATGAA 58.208 43.478 0.00 0.00 39.11 2.57
1881 2233 5.388654 GGAACCACATCCATTCCTATGAAT 58.611 41.667 0.00 0.00 41.96 2.57
1882 2234 5.474876 GGAACCACATCCATTCCTATGAATC 59.525 44.000 0.00 0.00 39.20 2.52
1883 2235 5.651612 ACCACATCCATTCCTATGAATCA 57.348 39.130 0.00 0.00 39.20 2.57
1884 2236 6.017211 ACCACATCCATTCCTATGAATCAA 57.983 37.500 0.00 0.00 39.20 2.57
1885 2237 6.434302 ACCACATCCATTCCTATGAATCAAA 58.566 36.000 0.00 0.00 39.20 2.69
1886 2238 6.896860 ACCACATCCATTCCTATGAATCAAAA 59.103 34.615 0.00 0.00 39.20 2.44
1887 2239 7.069085 ACCACATCCATTCCTATGAATCAAAAG 59.931 37.037 0.00 0.00 39.20 2.27
1888 2240 7.286087 CCACATCCATTCCTATGAATCAAAAGA 59.714 37.037 0.00 0.00 39.20 2.52
1889 2241 8.133627 CACATCCATTCCTATGAATCAAAAGAC 58.866 37.037 0.00 0.00 39.20 3.01
1890 2242 8.057623 ACATCCATTCCTATGAATCAAAAGACT 58.942 33.333 0.00 0.00 39.20 3.24
1891 2243 8.566260 CATCCATTCCTATGAATCAAAAGACTC 58.434 37.037 0.00 0.00 39.20 3.36
1892 2244 7.865820 TCCATTCCTATGAATCAAAAGACTCT 58.134 34.615 0.00 0.00 39.20 3.24
1893 2245 8.992349 TCCATTCCTATGAATCAAAAGACTCTA 58.008 33.333 0.00 0.00 39.20 2.43
1894 2246 9.618890 CCATTCCTATGAATCAAAAGACTCTAA 57.381 33.333 0.00 0.00 39.20 2.10
1897 2249 9.672673 TTCCTATGAATCAAAAGACTCTAAAGG 57.327 33.333 0.00 0.00 0.00 3.11
1898 2250 9.046846 TCCTATGAATCAAAAGACTCTAAAGGA 57.953 33.333 0.00 0.00 0.00 3.36
1899 2251 9.672673 CCTATGAATCAAAAGACTCTAAAGGAA 57.327 33.333 0.00 0.00 0.00 3.36
1960 2312 8.625786 ATGAAATTTTTCCAAATCAAAGGAGG 57.374 30.769 0.00 0.00 36.36 4.30
1961 2313 6.486320 TGAAATTTTTCCAAATCAAAGGAGGC 59.514 34.615 0.00 0.00 36.36 4.70
1975 2327 1.203112 AGGAGGCTTGAGACTGTGAGA 60.203 52.381 0.00 0.00 30.09 3.27
1997 2349 1.682323 GGAGTGCTGGGTAGTAGCTAC 59.318 57.143 16.43 16.43 41.66 3.58
1998 2350 2.657143 GAGTGCTGGGTAGTAGCTACT 58.343 52.381 28.50 28.50 41.66 2.57
1999 2351 3.434739 GGAGTGCTGGGTAGTAGCTACTA 60.435 52.174 26.36 26.36 41.66 1.82
2017 2369 8.983307 AGCTACTACAAGTACTACAATTGTTC 57.017 34.615 17.78 5.63 38.14 3.18
2018 2370 7.754027 AGCTACTACAAGTACTACAATTGTTCG 59.246 37.037 17.78 10.91 38.14 3.95
2036 2388 3.706802 TCGAGCTTGACAAATTTTGCA 57.293 38.095 9.04 5.74 0.00 4.08
2056 2408 3.715628 ACAAACTGTGTGAGGCAAATC 57.284 42.857 4.68 0.00 39.72 2.17
2057 2409 3.023119 ACAAACTGTGTGAGGCAAATCA 58.977 40.909 4.68 0.00 39.72 2.57
2058 2410 3.446873 ACAAACTGTGTGAGGCAAATCAA 59.553 39.130 4.68 0.00 39.72 2.57
2059 2411 3.996150 AACTGTGTGAGGCAAATCAAG 57.004 42.857 0.00 0.00 0.00 3.02
2060 2412 2.936202 ACTGTGTGAGGCAAATCAAGT 58.064 42.857 0.00 0.00 0.00 3.16
2061 2413 2.620115 ACTGTGTGAGGCAAATCAAGTG 59.380 45.455 0.00 0.00 0.00 3.16
2062 2414 2.620115 CTGTGTGAGGCAAATCAAGTGT 59.380 45.455 0.00 0.00 0.00 3.55
2063 2415 3.023119 TGTGTGAGGCAAATCAAGTGTT 58.977 40.909 0.00 0.00 0.00 3.32
2109 2464 3.531538 TGGGAAGAAGAATGTATCGTGC 58.468 45.455 0.00 0.00 0.00 5.34
2116 2471 2.025155 AGAATGTATCGTGCTCTCGGT 58.975 47.619 0.00 0.00 0.00 4.69
2155 2527 3.987404 GCTCATGGCCAACTCGTT 58.013 55.556 10.96 0.00 34.27 3.85
2156 2528 2.257353 GCTCATGGCCAACTCGTTT 58.743 52.632 10.96 0.00 34.27 3.60
2157 2529 1.448985 GCTCATGGCCAACTCGTTTA 58.551 50.000 10.96 0.00 34.27 2.01
2158 2530 2.017049 GCTCATGGCCAACTCGTTTAT 58.983 47.619 10.96 0.00 34.27 1.40
2159 2531 3.202906 GCTCATGGCCAACTCGTTTATA 58.797 45.455 10.96 0.00 34.27 0.98
2160 2532 3.625764 GCTCATGGCCAACTCGTTTATAA 59.374 43.478 10.96 0.00 34.27 0.98
2161 2533 4.095782 GCTCATGGCCAACTCGTTTATAAA 59.904 41.667 10.96 0.00 34.27 1.40
2162 2534 5.554822 TCATGGCCAACTCGTTTATAAAC 57.445 39.130 10.96 16.87 35.59 2.01
2270 2643 5.573380 AGCTATGCTTGATGATTTCCCTA 57.427 39.130 0.00 0.00 33.89 3.53
2271 2644 5.558818 AGCTATGCTTGATGATTTCCCTAG 58.441 41.667 0.00 0.00 33.89 3.02
2355 2737 4.003648 AGAAGTTCAGACTTATTTGCCCG 58.996 43.478 5.50 0.00 45.88 6.13
2392 2774 0.582005 GACTTTCACGTGCACTCCAC 59.418 55.000 16.19 0.00 41.15 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.052082 CGCCACACTTCCTGCCAG 61.052 66.667 0.00 0.00 0.00 4.85
3 4 3.605749 TAGGCGCCACACTTCCTGC 62.606 63.158 31.54 0.00 0.00 4.85
5 6 1.296715 CTTAGGCGCCACACTTCCT 59.703 57.895 31.54 7.63 0.00 3.36
6 7 1.745489 CCTTAGGCGCCACACTTCC 60.745 63.158 31.54 0.00 0.00 3.46
7 8 1.745489 CCCTTAGGCGCCACACTTC 60.745 63.158 31.54 0.00 0.00 3.01
8 9 1.562672 ATCCCTTAGGCGCCACACTT 61.563 55.000 31.54 10.27 0.00 3.16
9 10 0.689745 TATCCCTTAGGCGCCACACT 60.690 55.000 31.54 10.73 0.00 3.55
10 11 0.249911 CTATCCCTTAGGCGCCACAC 60.250 60.000 31.54 0.00 0.00 3.82
11 12 1.407656 CCTATCCCTTAGGCGCCACA 61.408 60.000 31.54 13.75 41.20 4.17
12 13 1.371558 CCTATCCCTTAGGCGCCAC 59.628 63.158 31.54 1.27 41.20 5.01
13 14 3.885814 CCTATCCCTTAGGCGCCA 58.114 61.111 31.54 12.31 41.20 5.69
19 20 0.601311 GTGCAGCGCCTATCCCTTAG 60.601 60.000 2.29 0.00 0.00 2.18
20 21 1.334384 TGTGCAGCGCCTATCCCTTA 61.334 55.000 2.29 0.00 0.00 2.69
21 22 2.190578 GTGCAGCGCCTATCCCTT 59.809 61.111 2.29 0.00 0.00 3.95
22 23 3.083349 TGTGCAGCGCCTATCCCT 61.083 61.111 2.29 0.00 0.00 4.20
23 24 2.590007 CTGTGCAGCGCCTATCCC 60.590 66.667 2.29 0.00 0.00 3.85
24 25 3.275338 GCTGTGCAGCGCCTATCC 61.275 66.667 2.29 0.00 45.29 2.59
44 45 4.436998 ACAGCTAGGCGTCGCACC 62.437 66.667 20.50 2.01 0.00 5.01
45 46 2.881352 GACAGCTAGGCGTCGCAC 60.881 66.667 20.50 8.57 0.00 5.34
46 47 4.476410 CGACAGCTAGGCGTCGCA 62.476 66.667 20.50 0.00 46.08 5.10
65 66 3.723348 GACCCTTTCGTGTGGCGC 61.723 66.667 0.00 0.00 41.07 6.53
66 67 2.280524 TGACCCTTTCGTGTGGCG 60.281 61.111 0.00 0.00 43.01 5.69
67 68 2.617274 GCTGACCCTTTCGTGTGGC 61.617 63.158 0.00 0.00 0.00 5.01
68 69 1.227823 TGCTGACCCTTTCGTGTGG 60.228 57.895 0.00 0.00 0.00 4.17
69 70 0.249868 TCTGCTGACCCTTTCGTGTG 60.250 55.000 0.00 0.00 0.00 3.82
70 71 0.034059 CTCTGCTGACCCTTTCGTGT 59.966 55.000 0.00 0.00 0.00 4.49
71 72 0.034059 ACTCTGCTGACCCTTTCGTG 59.966 55.000 0.00 0.00 0.00 4.35
72 73 0.034059 CACTCTGCTGACCCTTTCGT 59.966 55.000 0.00 0.00 0.00 3.85
73 74 0.318441 TCACTCTGCTGACCCTTTCG 59.682 55.000 0.00 0.00 0.00 3.46
74 75 2.550830 TTCACTCTGCTGACCCTTTC 57.449 50.000 0.00 0.00 0.00 2.62
75 76 3.515602 ATTTCACTCTGCTGACCCTTT 57.484 42.857 0.00 0.00 0.00 3.11
76 77 3.515602 AATTTCACTCTGCTGACCCTT 57.484 42.857 0.00 0.00 0.00 3.95
77 78 3.515602 AAATTTCACTCTGCTGACCCT 57.484 42.857 0.00 0.00 0.00 4.34
78 79 4.590850 AAAAATTTCACTCTGCTGACCC 57.409 40.909 0.00 0.00 0.00 4.46
97 98 4.928615 CACAAACTGACCTGCTTTCAAAAA 59.071 37.500 0.00 0.00 0.00 1.94
98 99 4.219507 TCACAAACTGACCTGCTTTCAAAA 59.780 37.500 0.00 0.00 0.00 2.44
99 100 3.761218 TCACAAACTGACCTGCTTTCAAA 59.239 39.130 0.00 0.00 0.00 2.69
100 101 3.351740 TCACAAACTGACCTGCTTTCAA 58.648 40.909 0.00 0.00 0.00 2.69
101 102 2.997980 TCACAAACTGACCTGCTTTCA 58.002 42.857 0.00 0.00 0.00 2.69
102 103 4.574599 ATTCACAAACTGACCTGCTTTC 57.425 40.909 0.00 0.00 0.00 2.62
103 104 4.402155 TCAATTCACAAACTGACCTGCTTT 59.598 37.500 0.00 0.00 0.00 3.51
104 105 3.953612 TCAATTCACAAACTGACCTGCTT 59.046 39.130 0.00 0.00 0.00 3.91
105 106 3.554934 TCAATTCACAAACTGACCTGCT 58.445 40.909 0.00 0.00 0.00 4.24
106 107 3.988379 TCAATTCACAAACTGACCTGC 57.012 42.857 0.00 0.00 0.00 4.85
107 108 6.639686 CAGAAATCAATTCACAAACTGACCTG 59.360 38.462 0.00 0.00 40.72 4.00
108 109 6.736794 GCAGAAATCAATTCACAAACTGACCT 60.737 38.462 0.00 0.00 40.72 3.85
109 110 5.403466 GCAGAAATCAATTCACAAACTGACC 59.597 40.000 0.00 0.00 40.72 4.02
110 111 5.403466 GGCAGAAATCAATTCACAAACTGAC 59.597 40.000 0.00 0.00 40.72 3.51
111 112 5.302568 AGGCAGAAATCAATTCACAAACTGA 59.697 36.000 0.00 0.00 40.72 3.41
112 113 5.535333 AGGCAGAAATCAATTCACAAACTG 58.465 37.500 0.00 0.00 40.72 3.16
113 114 5.302568 TGAGGCAGAAATCAATTCACAAACT 59.697 36.000 0.00 0.00 40.72 2.66
114 115 5.531634 TGAGGCAGAAATCAATTCACAAAC 58.468 37.500 0.00 0.00 40.72 2.93
115 116 5.279106 CCTGAGGCAGAAATCAATTCACAAA 60.279 40.000 0.00 0.00 40.72 2.83
116 117 4.219070 CCTGAGGCAGAAATCAATTCACAA 59.781 41.667 0.00 0.00 40.72 3.33
117 118 3.760151 CCTGAGGCAGAAATCAATTCACA 59.240 43.478 0.00 0.00 40.72 3.58
118 119 3.760684 ACCTGAGGCAGAAATCAATTCAC 59.239 43.478 0.00 0.00 40.72 3.18
119 120 4.012374 GACCTGAGGCAGAAATCAATTCA 58.988 43.478 0.00 0.00 40.72 2.57
120 121 4.012374 TGACCTGAGGCAGAAATCAATTC 58.988 43.478 0.00 0.00 38.39 2.17
121 122 4.038271 TGACCTGAGGCAGAAATCAATT 57.962 40.909 0.00 0.00 32.44 2.32
122 123 3.726557 TGACCTGAGGCAGAAATCAAT 57.273 42.857 0.00 0.00 32.44 2.57
123 124 3.507162 TTGACCTGAGGCAGAAATCAA 57.493 42.857 0.00 0.00 32.44 2.57
124 125 3.507162 TTTGACCTGAGGCAGAAATCA 57.493 42.857 0.00 0.00 32.44 2.57
125 126 4.853924 TTTTTGACCTGAGGCAGAAATC 57.146 40.909 0.00 0.00 32.44 2.17
126 127 4.590222 ACATTTTTGACCTGAGGCAGAAAT 59.410 37.500 14.21 14.21 32.44 2.17
127 128 3.960102 ACATTTTTGACCTGAGGCAGAAA 59.040 39.130 0.00 6.26 32.44 2.52
128 129 3.318839 CACATTTTTGACCTGAGGCAGAA 59.681 43.478 0.00 0.00 32.44 3.02
129 130 2.886523 CACATTTTTGACCTGAGGCAGA 59.113 45.455 0.00 0.00 32.44 4.26
130 131 2.886523 TCACATTTTTGACCTGAGGCAG 59.113 45.455 0.00 0.00 0.00 4.85
131 132 2.942804 TCACATTTTTGACCTGAGGCA 58.057 42.857 0.00 0.00 0.00 4.75
132 133 4.525912 AATCACATTTTTGACCTGAGGC 57.474 40.909 0.00 0.00 0.00 4.70
133 134 6.154445 CAGAAATCACATTTTTGACCTGAGG 58.846 40.000 0.00 0.00 36.71 3.86
134 135 5.632347 GCAGAAATCACATTTTTGACCTGAG 59.368 40.000 4.20 0.00 36.71 3.35
135 136 5.509501 GGCAGAAATCACATTTTTGACCTGA 60.510 40.000 4.20 0.00 36.63 3.86
136 137 4.687483 GGCAGAAATCACATTTTTGACCTG 59.313 41.667 4.20 0.00 36.63 4.00
137 138 4.559300 CGGCAGAAATCACATTTTTGACCT 60.559 41.667 4.20 0.00 38.71 3.85
138 139 3.674753 CGGCAGAAATCACATTTTTGACC 59.325 43.478 4.20 4.29 38.71 4.02
139 140 4.148696 CACGGCAGAAATCACATTTTTGAC 59.851 41.667 4.20 0.56 38.59 3.18
140 141 4.037327 TCACGGCAGAAATCACATTTTTGA 59.963 37.500 4.20 0.00 36.71 2.69
141 142 4.148696 GTCACGGCAGAAATCACATTTTTG 59.851 41.667 0.00 0.00 37.40 2.44
142 143 4.298332 GTCACGGCAGAAATCACATTTTT 58.702 39.130 0.00 0.00 31.47 1.94
143 144 3.609175 CGTCACGGCAGAAATCACATTTT 60.609 43.478 0.00 0.00 31.47 1.82
144 145 2.095768 CGTCACGGCAGAAATCACATTT 60.096 45.455 0.00 0.00 34.64 2.32
145 146 1.464608 CGTCACGGCAGAAATCACATT 59.535 47.619 0.00 0.00 0.00 2.71
146 147 1.078709 CGTCACGGCAGAAATCACAT 58.921 50.000 0.00 0.00 0.00 3.21
147 148 0.032815 TCGTCACGGCAGAAATCACA 59.967 50.000 0.00 0.00 0.00 3.58
148 149 1.061131 CATCGTCACGGCAGAAATCAC 59.939 52.381 0.00 0.00 0.00 3.06
149 150 1.067213 TCATCGTCACGGCAGAAATCA 60.067 47.619 0.00 0.00 0.00 2.57
150 151 1.590238 CTCATCGTCACGGCAGAAATC 59.410 52.381 0.00 0.00 0.00 2.17
151 152 1.645034 CTCATCGTCACGGCAGAAAT 58.355 50.000 0.00 0.00 0.00 2.17
152 153 1.014044 GCTCATCGTCACGGCAGAAA 61.014 55.000 0.00 0.00 0.00 2.52
153 154 1.446099 GCTCATCGTCACGGCAGAA 60.446 57.895 0.00 0.00 0.00 3.02
154 155 2.181777 GCTCATCGTCACGGCAGA 59.818 61.111 0.00 0.00 0.00 4.26
155 156 2.887568 GGCTCATCGTCACGGCAG 60.888 66.667 0.00 0.00 0.00 4.85
156 157 4.451150 GGGCTCATCGTCACGGCA 62.451 66.667 0.00 0.00 0.00 5.69
157 158 3.740128 ATGGGCTCATCGTCACGGC 62.740 63.158 0.00 0.00 0.00 5.68
158 159 1.884464 CATGGGCTCATCGTCACGG 60.884 63.158 0.00 0.00 0.00 4.94
159 160 2.528743 GCATGGGCTCATCGTCACG 61.529 63.158 0.00 0.00 36.96 4.35
160 161 2.182842 GGCATGGGCTCATCGTCAC 61.183 63.158 0.00 0.00 40.87 3.67
161 162 1.986632 ATGGCATGGGCTCATCGTCA 61.987 55.000 0.00 0.22 40.87 4.35
162 163 0.820891 AATGGCATGGGCTCATCGTC 60.821 55.000 0.00 0.00 40.87 4.20
163 164 0.820891 GAATGGCATGGGCTCATCGT 60.821 55.000 0.00 0.00 40.87 3.73
164 165 1.521450 GGAATGGCATGGGCTCATCG 61.521 60.000 0.00 0.00 40.87 3.84
165 166 0.468585 TGGAATGGCATGGGCTCATC 60.469 55.000 0.00 0.00 40.87 2.92
166 167 0.190069 ATGGAATGGCATGGGCTCAT 59.810 50.000 0.00 0.00 40.87 2.90
167 168 0.031917 AATGGAATGGCATGGGCTCA 60.032 50.000 0.00 0.00 40.87 4.26
168 169 0.677842 GAATGGAATGGCATGGGCTC 59.322 55.000 0.00 0.00 40.87 4.70
169 170 0.761702 GGAATGGAATGGCATGGGCT 60.762 55.000 0.00 0.00 40.87 5.19
170 171 1.750297 GGAATGGAATGGCATGGGC 59.250 57.895 0.00 0.00 40.13 5.36
171 172 1.466025 CCGGAATGGAATGGCATGGG 61.466 60.000 0.00 0.00 42.00 4.00
172 173 0.756442 ACCGGAATGGAATGGCATGG 60.756 55.000 9.46 0.00 42.00 3.66
173 174 0.386476 CACCGGAATGGAATGGCATG 59.614 55.000 9.46 0.00 42.00 4.06
174 175 1.394266 GCACCGGAATGGAATGGCAT 61.394 55.000 9.46 0.00 42.00 4.40
175 176 2.051518 GCACCGGAATGGAATGGCA 61.052 57.895 9.46 0.00 42.00 4.92
176 177 1.394266 ATGCACCGGAATGGAATGGC 61.394 55.000 9.46 0.00 42.00 4.40
177 178 0.386476 CATGCACCGGAATGGAATGG 59.614 55.000 9.46 0.00 42.00 3.16
178 179 0.249155 GCATGCACCGGAATGGAATG 60.249 55.000 14.21 6.11 42.00 2.67
179 180 0.683828 TGCATGCACCGGAATGGAAT 60.684 50.000 18.46 0.00 42.00 3.01
180 181 1.303970 TGCATGCACCGGAATGGAA 60.304 52.632 18.46 0.00 42.00 3.53
181 182 1.750018 CTGCATGCACCGGAATGGA 60.750 57.895 18.46 9.49 42.00 3.41
182 183 1.721664 CTCTGCATGCACCGGAATGG 61.722 60.000 18.46 4.45 46.41 3.16
183 184 1.721664 CCTCTGCATGCACCGGAATG 61.722 60.000 18.46 10.37 32.70 2.67
184 185 1.452651 CCTCTGCATGCACCGGAAT 60.453 57.895 18.46 0.00 0.00 3.01
185 186 2.046023 CCTCTGCATGCACCGGAA 60.046 61.111 18.46 0.00 0.00 4.30
186 187 4.783621 GCCTCTGCATGCACCGGA 62.784 66.667 26.68 18.14 37.47 5.14
187 188 4.790962 AGCCTCTGCATGCACCGG 62.791 66.667 18.46 19.99 41.13 5.28
188 189 3.200593 GAGCCTCTGCATGCACCG 61.201 66.667 18.46 8.64 41.13 4.94
189 190 2.113433 CAGAGCCTCTGCATGCACC 61.113 63.158 18.46 5.54 37.72 5.01
190 191 1.078637 TCAGAGCCTCTGCATGCAC 60.079 57.895 18.46 7.15 43.95 4.57
191 192 1.221021 CTCAGAGCCTCTGCATGCA 59.779 57.895 21.29 21.29 43.95 3.96
192 193 0.810823 GTCTCAGAGCCTCTGCATGC 60.811 60.000 17.08 11.82 43.95 4.06
193 194 0.179078 GGTCTCAGAGCCTCTGCATG 60.179 60.000 17.08 9.42 43.95 4.06
194 195 0.616964 TGGTCTCAGAGCCTCTGCAT 60.617 55.000 17.08 0.00 43.95 3.96
195 196 0.616964 ATGGTCTCAGAGCCTCTGCA 60.617 55.000 17.08 9.34 43.95 4.41
196 197 1.340889 CTATGGTCTCAGAGCCTCTGC 59.659 57.143 17.08 3.56 43.95 4.26
197 198 2.886523 CTCTATGGTCTCAGAGCCTCTG 59.113 54.545 15.79 15.79 45.59 3.35
198 199 2.513738 ACTCTATGGTCTCAGAGCCTCT 59.486 50.000 0.25 0.00 41.71 3.69
199 200 2.944129 ACTCTATGGTCTCAGAGCCTC 58.056 52.381 0.25 0.00 41.71 4.70
200 201 3.750599 GCTACTCTATGGTCTCAGAGCCT 60.751 52.174 0.25 0.00 41.71 4.58
201 202 2.556622 GCTACTCTATGGTCTCAGAGCC 59.443 54.545 0.25 0.00 41.71 4.70
202 203 3.486383 AGCTACTCTATGGTCTCAGAGC 58.514 50.000 0.00 0.00 41.71 4.09
203 204 6.109156 TCTAGCTACTCTATGGTCTCAGAG 57.891 45.833 0.00 0.00 43.28 3.35
204 205 6.271159 TCATCTAGCTACTCTATGGTCTCAGA 59.729 42.308 0.00 0.00 0.00 3.27
205 206 6.472016 TCATCTAGCTACTCTATGGTCTCAG 58.528 44.000 0.00 0.00 0.00 3.35
206 207 6.441088 TCATCTAGCTACTCTATGGTCTCA 57.559 41.667 0.00 0.00 0.00 3.27
207 208 5.880332 CCTCATCTAGCTACTCTATGGTCTC 59.120 48.000 0.00 0.00 0.00 3.36
208 209 5.550011 TCCTCATCTAGCTACTCTATGGTCT 59.450 44.000 0.00 0.00 0.00 3.85
209 210 5.811190 TCCTCATCTAGCTACTCTATGGTC 58.189 45.833 0.00 0.00 0.00 4.02
210 211 5.851808 TCCTCATCTAGCTACTCTATGGT 57.148 43.478 0.00 0.00 0.00 3.55
211 212 6.071616 GGTTTCCTCATCTAGCTACTCTATGG 60.072 46.154 0.00 0.00 0.00 2.74
212 213 6.491745 TGGTTTCCTCATCTAGCTACTCTATG 59.508 42.308 0.00 0.00 0.00 2.23
213 214 6.615617 TGGTTTCCTCATCTAGCTACTCTAT 58.384 40.000 0.00 0.00 0.00 1.98
214 215 6.014771 TGGTTTCCTCATCTAGCTACTCTA 57.985 41.667 0.00 0.00 0.00 2.43
215 216 4.873010 TGGTTTCCTCATCTAGCTACTCT 58.127 43.478 0.00 0.00 0.00 3.24
216 217 4.647399 ACTGGTTTCCTCATCTAGCTACTC 59.353 45.833 0.00 0.00 0.00 2.59
217 218 4.404073 CACTGGTTTCCTCATCTAGCTACT 59.596 45.833 0.00 0.00 0.00 2.57
218 219 4.442192 CCACTGGTTTCCTCATCTAGCTAC 60.442 50.000 0.00 0.00 0.00 3.58
219 220 3.706594 CCACTGGTTTCCTCATCTAGCTA 59.293 47.826 0.00 0.00 0.00 3.32
220 221 2.503356 CCACTGGTTTCCTCATCTAGCT 59.497 50.000 0.00 0.00 0.00 3.32
221 222 2.420687 CCCACTGGTTTCCTCATCTAGC 60.421 54.545 0.00 0.00 0.00 3.42
222 223 2.420687 GCCCACTGGTTTCCTCATCTAG 60.421 54.545 0.00 0.00 0.00 2.43
223 224 1.559682 GCCCACTGGTTTCCTCATCTA 59.440 52.381 0.00 0.00 0.00 1.98
224 225 0.329596 GCCCACTGGTTTCCTCATCT 59.670 55.000 0.00 0.00 0.00 2.90
225 226 0.038166 TGCCCACTGGTTTCCTCATC 59.962 55.000 0.00 0.00 0.00 2.92
226 227 0.038744 CTGCCCACTGGTTTCCTCAT 59.961 55.000 0.00 0.00 0.00 2.90
227 228 1.352622 ACTGCCCACTGGTTTCCTCA 61.353 55.000 0.00 0.00 0.00 3.86
228 229 0.890996 CACTGCCCACTGGTTTCCTC 60.891 60.000 0.00 0.00 0.00 3.71
229 230 1.151450 CACTGCCCACTGGTTTCCT 59.849 57.895 0.00 0.00 0.00 3.36
230 231 1.903404 CCACTGCCCACTGGTTTCC 60.903 63.158 0.00 0.00 0.00 3.13
231 232 1.903404 CCCACTGCCCACTGGTTTC 60.903 63.158 0.00 0.00 0.00 2.78
232 233 2.198426 CCCACTGCCCACTGGTTT 59.802 61.111 0.00 0.00 0.00 3.27
233 234 2.776526 TCCCACTGCCCACTGGTT 60.777 61.111 0.00 0.00 0.00 3.67
234 235 3.252284 CTCCCACTGCCCACTGGT 61.252 66.667 0.00 0.00 0.00 4.00
235 236 4.729918 GCTCCCACTGCCCACTGG 62.730 72.222 0.00 0.00 0.00 4.00
242 243 4.704833 TCAAGGCGCTCCCACTGC 62.705 66.667 7.64 0.00 35.39 4.40
243 244 2.435586 CTCAAGGCGCTCCCACTG 60.436 66.667 7.64 0.00 35.39 3.66
244 245 4.400961 GCTCAAGGCGCTCCCACT 62.401 66.667 7.64 0.00 35.39 4.00
249 250 3.160984 AGAGAGAAGCTCAAGGCGCTC 62.161 57.143 7.64 0.00 46.45 5.03
250 251 1.257055 AGAGAGAAGCTCAAGGCGCT 61.257 55.000 7.64 0.00 46.45 5.92
251 252 1.083242 CAGAGAGAAGCTCAAGGCGC 61.083 60.000 0.00 0.00 46.45 6.53
252 253 0.459934 CCAGAGAGAAGCTCAAGGCG 60.460 60.000 0.00 0.00 46.45 5.52
253 254 3.457099 CCAGAGAGAAGCTCAAGGC 57.543 57.895 0.00 0.00 46.45 4.35
254 255 0.459934 CGCCAGAGAGAAGCTCAAGG 60.460 60.000 0.00 0.00 46.45 3.61
255 256 1.083242 GCGCCAGAGAGAAGCTCAAG 61.083 60.000 0.00 0.00 46.45 3.02
256 257 1.079543 GCGCCAGAGAGAAGCTCAA 60.080 57.895 0.00 0.00 46.45 3.02
257 258 1.539560 AAGCGCCAGAGAGAAGCTCA 61.540 55.000 2.29 0.00 46.45 4.26
258 259 1.083242 CAAGCGCCAGAGAGAAGCTC 61.083 60.000 2.29 0.00 44.29 4.09
259 260 1.079266 CAAGCGCCAGAGAGAAGCT 60.079 57.895 2.29 0.00 40.20 3.74
260 261 1.375268 ACAAGCGCCAGAGAGAAGC 60.375 57.895 2.29 0.00 0.00 3.86
261 262 1.633852 GCACAAGCGCCAGAGAGAAG 61.634 60.000 2.29 0.00 0.00 2.85
262 263 1.669115 GCACAAGCGCCAGAGAGAA 60.669 57.895 2.29 0.00 0.00 2.87
263 264 2.047844 GCACAAGCGCCAGAGAGA 60.048 61.111 2.29 0.00 0.00 3.10
274 275 3.716006 CACCCACGCGAGCACAAG 61.716 66.667 15.93 0.00 0.00 3.16
275 276 4.228567 TCACCCACGCGAGCACAA 62.229 61.111 15.93 0.00 0.00 3.33
276 277 4.662961 CTCACCCACGCGAGCACA 62.663 66.667 15.93 0.00 0.00 4.57
277 278 2.758770 TTACTCACCCACGCGAGCAC 62.759 60.000 15.93 0.00 32.21 4.40
278 279 1.884075 ATTACTCACCCACGCGAGCA 61.884 55.000 15.93 0.00 32.21 4.26
279 280 0.101759 TATTACTCACCCACGCGAGC 59.898 55.000 15.93 0.00 32.21 5.03
280 281 2.572191 TTATTACTCACCCACGCGAG 57.428 50.000 15.93 4.16 35.30 5.03
281 282 3.450578 GATTTATTACTCACCCACGCGA 58.549 45.455 15.93 0.00 0.00 5.87
282 283 2.217847 CGATTTATTACTCACCCACGCG 59.782 50.000 3.53 3.53 0.00 6.01
283 284 2.033151 GCGATTTATTACTCACCCACGC 60.033 50.000 0.00 0.00 36.06 5.34
284 285 3.191669 TGCGATTTATTACTCACCCACG 58.808 45.455 0.00 0.00 0.00 4.94
285 286 5.510671 CATTGCGATTTATTACTCACCCAC 58.489 41.667 0.00 0.00 0.00 4.61
286 287 4.036262 GCATTGCGATTTATTACTCACCCA 59.964 41.667 0.00 0.00 0.00 4.51
287 288 4.036262 TGCATTGCGATTTATTACTCACCC 59.964 41.667 3.84 0.00 0.00 4.61
288 289 4.970003 GTGCATTGCGATTTATTACTCACC 59.030 41.667 3.84 0.00 0.00 4.02
289 290 5.810525 AGTGCATTGCGATTTATTACTCAC 58.189 37.500 3.84 0.00 0.00 3.51
290 291 5.276820 CGAGTGCATTGCGATTTATTACTCA 60.277 40.000 16.74 0.00 33.50 3.41
291 292 5.133264 CGAGTGCATTGCGATTTATTACTC 58.867 41.667 3.84 7.64 0.00 2.59
292 293 4.552767 GCGAGTGCATTGCGATTTATTACT 60.553 41.667 3.84 0.00 42.15 2.24
293 294 3.659444 GCGAGTGCATTGCGATTTATTAC 59.341 43.478 3.84 0.00 42.15 1.89
294 295 3.303725 GGCGAGTGCATTGCGATTTATTA 60.304 43.478 3.84 0.00 45.35 0.98
295 296 2.541588 GGCGAGTGCATTGCGATTTATT 60.542 45.455 3.84 0.00 45.35 1.40
296 297 1.002468 GGCGAGTGCATTGCGATTTAT 60.002 47.619 3.84 0.00 45.35 1.40
297 298 0.376852 GGCGAGTGCATTGCGATTTA 59.623 50.000 3.84 0.00 45.35 1.40
298 299 1.137404 GGCGAGTGCATTGCGATTT 59.863 52.632 3.84 0.00 45.35 2.17
299 300 2.764314 GGGCGAGTGCATTGCGATT 61.764 57.895 3.84 0.00 45.35 3.34
300 301 3.204827 GGGCGAGTGCATTGCGAT 61.205 61.111 3.84 0.00 45.35 4.58
303 304 4.465512 CACGGGCGAGTGCATTGC 62.466 66.667 0.46 0.46 45.35 3.56
304 305 2.324330 TTCACGGGCGAGTGCATTG 61.324 57.895 6.83 0.00 45.35 2.82
305 306 2.031919 TTCACGGGCGAGTGCATT 59.968 55.556 6.83 0.00 45.35 3.56
306 307 1.884075 TAGTTCACGGGCGAGTGCAT 61.884 55.000 6.83 0.00 45.35 3.96
307 308 1.884075 ATAGTTCACGGGCGAGTGCA 61.884 55.000 6.83 0.00 45.35 4.57
308 309 1.146358 GATAGTTCACGGGCGAGTGC 61.146 60.000 6.83 0.00 41.61 4.40
309 310 0.456221 AGATAGTTCACGGGCGAGTG 59.544 55.000 5.52 5.52 43.11 3.51
310 311 0.739561 GAGATAGTTCACGGGCGAGT 59.260 55.000 0.00 0.00 0.00 4.18
311 312 1.002251 GAGAGATAGTTCACGGGCGAG 60.002 57.143 0.00 0.00 0.00 5.03
312 313 1.022735 GAGAGATAGTTCACGGGCGA 58.977 55.000 0.00 0.00 0.00 5.54
313 314 1.002251 GAGAGAGATAGTTCACGGGCG 60.002 57.143 0.00 0.00 0.00 6.13
314 315 2.292292 GAGAGAGAGATAGTTCACGGGC 59.708 54.545 0.00 0.00 0.00 6.13
315 316 3.815809 AGAGAGAGAGATAGTTCACGGG 58.184 50.000 0.00 0.00 0.00 5.28
316 317 6.464222 AGATAGAGAGAGAGATAGTTCACGG 58.536 44.000 0.00 0.00 0.00 4.94
317 318 7.116376 GTGAGATAGAGAGAGAGATAGTTCACG 59.884 44.444 0.00 0.00 0.00 4.35
318 319 8.150945 AGTGAGATAGAGAGAGAGATAGTTCAC 58.849 40.741 0.00 0.00 0.00 3.18
319 320 8.262601 AGTGAGATAGAGAGAGAGATAGTTCA 57.737 38.462 0.00 0.00 0.00 3.18
323 324 9.823647 GGATTAGTGAGATAGAGAGAGAGATAG 57.176 40.741 0.00 0.00 0.00 2.08
324 325 8.768397 GGGATTAGTGAGATAGAGAGAGAGATA 58.232 40.741 0.00 0.00 0.00 1.98
325 326 7.311929 GGGGATTAGTGAGATAGAGAGAGAGAT 60.312 44.444 0.00 0.00 0.00 2.75
326 327 6.012858 GGGGATTAGTGAGATAGAGAGAGAGA 60.013 46.154 0.00 0.00 0.00 3.10
327 328 6.180472 GGGGATTAGTGAGATAGAGAGAGAG 58.820 48.000 0.00 0.00 0.00 3.20
328 329 5.280266 CGGGGATTAGTGAGATAGAGAGAGA 60.280 48.000 0.00 0.00 0.00 3.10
329 330 4.941263 CGGGGATTAGTGAGATAGAGAGAG 59.059 50.000 0.00 0.00 0.00 3.20
330 331 4.807984 GCGGGGATTAGTGAGATAGAGAGA 60.808 50.000 0.00 0.00 0.00 3.10
331 332 3.442273 GCGGGGATTAGTGAGATAGAGAG 59.558 52.174 0.00 0.00 0.00 3.20
332 333 3.181433 TGCGGGGATTAGTGAGATAGAGA 60.181 47.826 0.00 0.00 0.00 3.10
333 334 3.157881 TGCGGGGATTAGTGAGATAGAG 58.842 50.000 0.00 0.00 0.00 2.43
334 335 3.238788 TGCGGGGATTAGTGAGATAGA 57.761 47.619 0.00 0.00 0.00 1.98
335 336 3.069586 TGTTGCGGGGATTAGTGAGATAG 59.930 47.826 0.00 0.00 0.00 2.08
336 337 3.035363 TGTTGCGGGGATTAGTGAGATA 58.965 45.455 0.00 0.00 0.00 1.98
337 338 1.837439 TGTTGCGGGGATTAGTGAGAT 59.163 47.619 0.00 0.00 0.00 2.75
338 339 1.207089 CTGTTGCGGGGATTAGTGAGA 59.793 52.381 0.00 0.00 0.00 3.27
339 340 1.656652 CTGTTGCGGGGATTAGTGAG 58.343 55.000 0.00 0.00 0.00 3.51
340 341 0.251916 CCTGTTGCGGGGATTAGTGA 59.748 55.000 0.00 0.00 0.00 3.41
341 342 1.376609 GCCTGTTGCGGGGATTAGTG 61.377 60.000 0.00 0.00 0.00 2.74
342 343 1.077716 GCCTGTTGCGGGGATTAGT 60.078 57.895 0.00 0.00 0.00 2.24
343 344 0.679640 TTGCCTGTTGCGGGGATTAG 60.680 55.000 0.00 0.00 45.60 1.73
344 345 0.963355 GTTGCCTGTTGCGGGGATTA 60.963 55.000 0.00 0.00 45.60 1.75
345 346 2.117206 TTGCCTGTTGCGGGGATT 59.883 55.556 0.00 0.00 45.60 3.01
346 347 2.676471 GTTGCCTGTTGCGGGGAT 60.676 61.111 0.00 0.00 45.60 3.85
347 348 4.966787 GGTTGCCTGTTGCGGGGA 62.967 66.667 0.00 0.00 45.60 4.81
382 383 0.915364 GAGCAGAGGAAGGGGAATGT 59.085 55.000 0.00 0.00 0.00 2.71
413 414 2.182030 GAAGAGGACGGGCAGACG 59.818 66.667 0.00 0.00 40.31 4.18
414 415 2.579738 GGAAGAGGACGGGCAGAC 59.420 66.667 0.00 0.00 0.00 3.51
415 416 2.683933 GGGAAGAGGACGGGCAGA 60.684 66.667 0.00 0.00 0.00 4.26
416 417 2.245438 GAAGGGAAGAGGACGGGCAG 62.245 65.000 0.00 0.00 0.00 4.85
417 418 2.203938 AAGGGAAGAGGACGGGCA 60.204 61.111 0.00 0.00 0.00 5.36
418 419 2.585153 GAAGGGAAGAGGACGGGC 59.415 66.667 0.00 0.00 0.00 6.13
429 430 0.044244 CCTACTGAAGGGGGAAGGGA 59.956 60.000 0.00 0.00 42.32 4.20
438 439 1.657804 AGTGTTCCCCCTACTGAAGG 58.342 55.000 0.00 0.00 46.09 3.46
439 440 2.027100 GGAAGTGTTCCCCCTACTGAAG 60.027 54.545 0.00 0.00 44.30 3.02
440 441 1.982958 GGAAGTGTTCCCCCTACTGAA 59.017 52.381 0.00 0.00 44.30 3.02
441 442 1.652947 GGAAGTGTTCCCCCTACTGA 58.347 55.000 0.00 0.00 44.30 3.41
451 452 3.000727 CACGTAGGGAATGGAAGTGTTC 58.999 50.000 0.00 0.00 0.00 3.18
452 453 2.874457 GCACGTAGGGAATGGAAGTGTT 60.874 50.000 0.00 0.00 0.00 3.32
453 454 1.338769 GCACGTAGGGAATGGAAGTGT 60.339 52.381 0.00 0.00 0.00 3.55
455 456 1.207329 GAGCACGTAGGGAATGGAAGT 59.793 52.381 0.00 0.00 0.00 3.01
456 457 1.802880 CGAGCACGTAGGGAATGGAAG 60.803 57.143 0.00 0.00 34.56 3.46
458 459 0.681887 TCGAGCACGTAGGGAATGGA 60.682 55.000 2.86 0.00 40.69 3.41
459 460 0.174845 TTCGAGCACGTAGGGAATGG 59.825 55.000 2.86 0.00 40.69 3.16
461 462 1.806623 GCATTCGAGCACGTAGGGAAT 60.807 52.381 2.86 0.00 40.69 3.01
462 463 0.459585 GCATTCGAGCACGTAGGGAA 60.460 55.000 2.86 0.00 40.69 3.97
463 464 1.141019 GCATTCGAGCACGTAGGGA 59.859 57.895 2.86 0.00 40.69 4.20
723 744 2.920912 ACGGCCACGGAGAGGAAA 60.921 61.111 2.24 0.00 42.26 3.13
731 752 4.873129 CGATGGAGACGGCCACGG 62.873 72.222 2.24 0.00 46.48 4.94
750 771 1.967535 CACGAGCAGGAGGACAAGA 59.032 57.895 0.00 0.00 0.00 3.02
911 938 2.284699 AGACCACGAGGAAGGGGG 60.285 66.667 5.68 0.00 39.55 5.40
977 1022 0.600255 CTTGTTCTTGTCCGGAGCGT 60.600 55.000 3.06 0.00 0.00 5.07
1191 1239 1.372087 CCAGAAGGGCGAAGATGCAC 61.372 60.000 0.00 0.00 39.04 4.57
1206 1254 4.344865 GCCGGGAAAGCCACCAGA 62.345 66.667 2.18 0.00 35.15 3.86
1224 1272 2.436646 GCATCGTCCACCACCAGG 60.437 66.667 0.00 0.00 42.21 4.45
1371 1419 0.249155 GGTGAACCTTGTCGACGACA 60.249 55.000 26.04 26.04 41.09 4.35
1477 1529 3.007290 GTCATGGACAGGATGCAGCTATA 59.993 47.826 0.22 0.00 42.53 1.31
1478 1530 2.052468 TCATGGACAGGATGCAGCTAT 58.948 47.619 0.22 0.00 42.53 2.97
1496 1548 2.637382 TCAAGTTGCTACCATGGAGTCA 59.363 45.455 21.47 9.57 0.00 3.41
1622 1966 9.862371 AAGCATGCATATACTAATCTACTGTAC 57.138 33.333 21.98 0.00 0.00 2.90
1623 1967 9.860898 CAAGCATGCATATACTAATCTACTGTA 57.139 33.333 21.98 0.00 0.00 2.74
1626 1970 7.180946 TCCCAAGCATGCATATACTAATCTACT 59.819 37.037 21.98 0.00 0.00 2.57
1628 1972 7.180946 AGTCCCAAGCATGCATATACTAATCTA 59.819 37.037 21.98 0.00 0.00 1.98
1630 1974 6.176183 AGTCCCAAGCATGCATATACTAATC 58.824 40.000 21.98 0.40 0.00 1.75
1631 1975 6.131972 AGTCCCAAGCATGCATATACTAAT 57.868 37.500 21.98 0.00 0.00 1.73
1632 1976 5.567037 AGTCCCAAGCATGCATATACTAA 57.433 39.130 21.98 0.00 0.00 2.24
1633 1977 6.874278 ATAGTCCCAAGCATGCATATACTA 57.126 37.500 21.98 18.75 0.00 1.82
1635 1979 9.784531 AATATATAGTCCCAAGCATGCATATAC 57.215 33.333 21.98 10.96 0.00 1.47
1653 1997 8.292448 GCATCAAAGACCACCACAAATATATAG 58.708 37.037 0.00 0.00 0.00 1.31
1662 2006 0.478072 AGGCATCAAAGACCACCACA 59.522 50.000 0.00 0.00 0.00 4.17
1667 2019 3.037549 ACCAAAAAGGCATCAAAGACCA 58.962 40.909 0.00 0.00 43.14 4.02
1669 2021 4.692228 TGAACCAAAAAGGCATCAAAGAC 58.308 39.130 0.00 0.00 43.14 3.01
1670 2022 5.549742 ATGAACCAAAAAGGCATCAAAGA 57.450 34.783 0.00 0.00 43.14 2.52
1671 2023 5.870978 CCTATGAACCAAAAAGGCATCAAAG 59.129 40.000 0.00 0.00 43.14 2.77
1672 2024 5.541868 TCCTATGAACCAAAAAGGCATCAAA 59.458 36.000 0.00 0.00 43.14 2.69
1673 2025 5.083122 TCCTATGAACCAAAAAGGCATCAA 58.917 37.500 0.00 0.00 43.14 2.57
1674 2026 4.671831 TCCTATGAACCAAAAAGGCATCA 58.328 39.130 0.00 0.00 43.14 3.07
1675 2027 5.859205 ATCCTATGAACCAAAAAGGCATC 57.141 39.130 0.00 0.00 43.14 3.91
1676 2028 5.835280 CCTATCCTATGAACCAAAAAGGCAT 59.165 40.000 0.00 0.00 43.14 4.40
1677 2029 5.044476 TCCTATCCTATGAACCAAAAAGGCA 60.044 40.000 0.00 0.00 43.14 4.75
1678 2030 5.445964 TCCTATCCTATGAACCAAAAAGGC 58.554 41.667 0.00 0.00 43.14 4.35
1679 2031 9.813826 ATAATCCTATCCTATGAACCAAAAAGG 57.186 33.333 0.00 0.00 45.67 3.11
1685 2037 9.046846 CCTACAATAATCCTATCCTATGAACCA 57.953 37.037 0.00 0.00 0.00 3.67
1686 2038 9.268282 TCCTACAATAATCCTATCCTATGAACC 57.732 37.037 0.00 0.00 0.00 3.62
1709 2061 9.413734 CTCATTTCCTACAAAATTCCTATTCCT 57.586 33.333 0.00 0.00 0.00 3.36
1710 2062 9.408648 TCTCATTTCCTACAAAATTCCTATTCC 57.591 33.333 0.00 0.00 0.00 3.01
1714 2066 9.396022 GTCATCTCATTTCCTACAAAATTCCTA 57.604 33.333 0.00 0.00 0.00 2.94
1715 2067 7.890127 TGTCATCTCATTTCCTACAAAATTCCT 59.110 33.333 0.00 0.00 0.00 3.36
1716 2068 8.055279 TGTCATCTCATTTCCTACAAAATTCC 57.945 34.615 0.00 0.00 0.00 3.01
1755 2107 7.747155 TCTCGTTTCCTATTCCTACTCATAG 57.253 40.000 0.00 0.00 0.00 2.23
1756 2108 9.976776 ATATCTCGTTTCCTATTCCTACTCATA 57.023 33.333 0.00 0.00 0.00 2.15
1757 2109 8.887264 ATATCTCGTTTCCTATTCCTACTCAT 57.113 34.615 0.00 0.00 0.00 2.90
1758 2110 7.942894 TGATATCTCGTTTCCTATTCCTACTCA 59.057 37.037 3.98 0.00 0.00 3.41
1759 2111 8.338072 TGATATCTCGTTTCCTATTCCTACTC 57.662 38.462 3.98 0.00 0.00 2.59
1760 2112 8.887264 ATGATATCTCGTTTCCTATTCCTACT 57.113 34.615 3.98 0.00 0.00 2.57
1761 2113 9.930693 AAATGATATCTCGTTTCCTATTCCTAC 57.069 33.333 3.98 0.00 36.11 3.18
1762 2114 9.929180 CAAATGATATCTCGTTTCCTATTCCTA 57.071 33.333 3.98 0.00 38.31 2.94
1763 2115 8.432805 ACAAATGATATCTCGTTTCCTATTCCT 58.567 33.333 3.98 0.00 38.31 3.36
1764 2116 8.608844 ACAAATGATATCTCGTTTCCTATTCC 57.391 34.615 3.98 0.00 38.31 3.01
1767 2119 9.613428 TCAAACAAATGATATCTCGTTTCCTAT 57.387 29.630 3.98 0.00 38.31 2.57
1768 2120 8.879759 GTCAAACAAATGATATCTCGTTTCCTA 58.120 33.333 3.98 0.00 38.31 2.94
1769 2121 7.390440 TGTCAAACAAATGATATCTCGTTTCCT 59.610 33.333 3.98 0.00 38.31 3.36
1770 2122 7.526608 TGTCAAACAAATGATATCTCGTTTCC 58.473 34.615 3.98 3.02 38.31 3.13
1771 2123 9.214953 GATGTCAAACAAATGATATCTCGTTTC 57.785 33.333 3.98 0.00 41.83 2.78
1772 2124 8.729756 TGATGTCAAACAAATGATATCTCGTTT 58.270 29.630 12.95 5.61 44.00 3.60
1773 2125 8.267620 TGATGTCAAACAAATGATATCTCGTT 57.732 30.769 12.95 0.00 44.00 3.85
1774 2126 7.848223 TGATGTCAAACAAATGATATCTCGT 57.152 32.000 12.95 0.00 44.00 4.18
1775 2127 9.218359 CTTTGATGTCAAACAAATGATATCTCG 57.782 33.333 12.95 0.00 44.00 4.04
1801 2153 9.965824 TGAACCTAGACTCAATGAAAAATTTTC 57.034 29.630 11.24 11.24 0.00 2.29
1837 2189 9.793259 GGTTCCTATTATCCACATTTCATAGAA 57.207 33.333 0.00 0.00 0.00 2.10
1838 2190 8.944138 TGGTTCCTATTATCCACATTTCATAGA 58.056 33.333 0.00 0.00 0.00 1.98
1839 2191 9.003658 GTGGTTCCTATTATCCACATTTCATAG 57.996 37.037 8.09 0.00 46.44 2.23
1840 2192 8.918202 GTGGTTCCTATTATCCACATTTCATA 57.082 34.615 8.09 0.00 46.44 2.15
1841 2193 7.823745 GTGGTTCCTATTATCCACATTTCAT 57.176 36.000 8.09 0.00 46.44 2.57
1848 2200 5.880901 ATGGATGTGGTTCCTATTATCCAC 58.119 41.667 5.95 6.28 44.67 4.02
1849 2201 6.467194 GGAATGGATGTGGTTCCTATTATCCA 60.467 42.308 0.00 0.00 45.58 3.41
1850 2202 5.946377 GGAATGGATGTGGTTCCTATTATCC 59.054 44.000 0.00 0.00 38.65 2.59
1858 2210 4.437682 TCATAGGAATGGATGTGGTTCC 57.562 45.455 0.00 0.00 41.32 3.62
1859 2211 6.064060 TGATTCATAGGAATGGATGTGGTTC 58.936 40.000 7.46 0.00 43.69 3.62
1860 2212 6.017211 TGATTCATAGGAATGGATGTGGTT 57.983 37.500 7.46 0.00 43.69 3.67
1861 2213 5.651612 TGATTCATAGGAATGGATGTGGT 57.348 39.130 7.46 0.00 43.69 4.16
1862 2214 6.964807 TTTGATTCATAGGAATGGATGTGG 57.035 37.500 7.46 0.00 43.69 4.17
1863 2215 8.133627 GTCTTTTGATTCATAGGAATGGATGTG 58.866 37.037 7.46 0.00 43.69 3.21
1864 2216 8.057623 AGTCTTTTGATTCATAGGAATGGATGT 58.942 33.333 7.46 0.00 43.69 3.06
1865 2217 8.461249 AGTCTTTTGATTCATAGGAATGGATG 57.539 34.615 7.46 0.00 43.69 3.51
1866 2218 8.501070 AGAGTCTTTTGATTCATAGGAATGGAT 58.499 33.333 7.46 0.00 43.69 3.41
1867 2219 7.865820 AGAGTCTTTTGATTCATAGGAATGGA 58.134 34.615 7.46 0.00 43.69 3.41
1868 2220 9.618890 TTAGAGTCTTTTGATTCATAGGAATGG 57.381 33.333 7.46 0.00 43.69 3.16
1871 2223 9.672673 CCTTTAGAGTCTTTTGATTCATAGGAA 57.327 33.333 0.00 0.00 37.61 3.36
1872 2224 9.046846 TCCTTTAGAGTCTTTTGATTCATAGGA 57.953 33.333 0.00 0.00 37.61 2.94
1873 2225 9.672673 TTCCTTTAGAGTCTTTTGATTCATAGG 57.327 33.333 0.00 0.00 37.61 2.57
1934 2286 9.723601 CCTCCTTTGATTTGGAAAAATTTCATA 57.276 29.630 8.06 0.00 38.92 2.15
1935 2287 7.175467 GCCTCCTTTGATTTGGAAAAATTTCAT 59.825 33.333 8.06 0.00 38.92 2.57
1936 2288 6.486320 GCCTCCTTTGATTTGGAAAAATTTCA 59.514 34.615 8.06 0.00 38.92 2.69
1937 2289 6.712095 AGCCTCCTTTGATTTGGAAAAATTTC 59.288 34.615 0.00 0.00 36.46 2.17
1938 2290 6.604171 AGCCTCCTTTGATTTGGAAAAATTT 58.396 32.000 0.00 0.00 31.23 1.82
1939 2291 6.191657 AGCCTCCTTTGATTTGGAAAAATT 57.808 33.333 0.00 0.00 31.23 1.82
1940 2292 5.830799 AGCCTCCTTTGATTTGGAAAAAT 57.169 34.783 0.00 0.00 31.23 1.82
1941 2293 5.130145 TCAAGCCTCCTTTGATTTGGAAAAA 59.870 36.000 0.00 0.00 31.23 1.94
1942 2294 4.653341 TCAAGCCTCCTTTGATTTGGAAAA 59.347 37.500 0.00 0.00 31.23 2.29
1943 2295 4.222336 TCAAGCCTCCTTTGATTTGGAAA 58.778 39.130 0.00 0.00 31.23 3.13
1944 2296 3.828451 CTCAAGCCTCCTTTGATTTGGAA 59.172 43.478 0.00 0.00 31.23 3.53
1945 2297 3.074390 TCTCAAGCCTCCTTTGATTTGGA 59.926 43.478 0.00 0.00 0.00 3.53
1946 2298 3.192212 GTCTCAAGCCTCCTTTGATTTGG 59.808 47.826 0.00 0.00 0.00 3.28
1947 2299 4.077822 AGTCTCAAGCCTCCTTTGATTTG 58.922 43.478 0.00 0.00 0.00 2.32
1948 2300 4.077822 CAGTCTCAAGCCTCCTTTGATTT 58.922 43.478 0.00 0.00 0.00 2.17
1949 2301 3.073650 ACAGTCTCAAGCCTCCTTTGATT 59.926 43.478 0.00 0.00 0.00 2.57
1950 2302 2.641815 ACAGTCTCAAGCCTCCTTTGAT 59.358 45.455 0.00 0.00 0.00 2.57
1951 2303 2.050144 ACAGTCTCAAGCCTCCTTTGA 58.950 47.619 0.00 0.00 0.00 2.69
1952 2304 2.149578 CACAGTCTCAAGCCTCCTTTG 58.850 52.381 0.00 0.00 0.00 2.77
1953 2305 2.038295 CTCACAGTCTCAAGCCTCCTTT 59.962 50.000 0.00 0.00 0.00 3.11
1954 2306 1.622811 CTCACAGTCTCAAGCCTCCTT 59.377 52.381 0.00 0.00 0.00 3.36
1955 2307 1.203112 TCTCACAGTCTCAAGCCTCCT 60.203 52.381 0.00 0.00 0.00 3.69
1956 2308 1.204467 CTCTCACAGTCTCAAGCCTCC 59.796 57.143 0.00 0.00 0.00 4.30
1957 2309 1.204467 CCTCTCACAGTCTCAAGCCTC 59.796 57.143 0.00 0.00 0.00 4.70
1958 2310 1.265236 CCTCTCACAGTCTCAAGCCT 58.735 55.000 0.00 0.00 0.00 4.58
1959 2311 0.248843 CCCTCTCACAGTCTCAAGCC 59.751 60.000 0.00 0.00 0.00 4.35
1960 2312 1.204467 CTCCCTCTCACAGTCTCAAGC 59.796 57.143 0.00 0.00 0.00 4.01
1961 2313 2.230992 CACTCCCTCTCACAGTCTCAAG 59.769 54.545 0.00 0.00 0.00 3.02
1975 2327 0.688087 GCTACTACCCAGCACTCCCT 60.688 60.000 0.00 0.00 38.93 4.20
1997 2349 6.807230 AGCTCGAACAATTGTAGTACTTGTAG 59.193 38.462 12.39 2.56 33.01 2.74
1998 2350 6.684686 AGCTCGAACAATTGTAGTACTTGTA 58.315 36.000 12.39 0.00 33.01 2.41
1999 2351 5.539048 AGCTCGAACAATTGTAGTACTTGT 58.461 37.500 12.39 2.16 34.71 3.16
2000 2352 6.145534 TCAAGCTCGAACAATTGTAGTACTTG 59.854 38.462 24.64 24.64 0.00 3.16
2001 2353 6.145696 GTCAAGCTCGAACAATTGTAGTACTT 59.854 38.462 12.39 12.92 0.00 2.24
2002 2354 5.634020 GTCAAGCTCGAACAATTGTAGTACT 59.366 40.000 12.39 0.00 0.00 2.73
2003 2355 5.404366 TGTCAAGCTCGAACAATTGTAGTAC 59.596 40.000 12.39 6.27 0.00 2.73
2004 2356 5.534407 TGTCAAGCTCGAACAATTGTAGTA 58.466 37.500 12.39 0.00 0.00 1.82
2005 2357 4.377021 TGTCAAGCTCGAACAATTGTAGT 58.623 39.130 12.39 0.00 0.00 2.73
2006 2358 4.990543 TGTCAAGCTCGAACAATTGTAG 57.009 40.909 12.39 9.46 0.00 2.74
2017 2369 3.114809 TGTGCAAAATTTGTCAAGCTCG 58.885 40.909 7.60 0.00 0.00 5.03
2018 2370 5.063817 AGTTTGTGCAAAATTTGTCAAGCTC 59.936 36.000 19.31 13.36 31.33 4.09
2036 2388 3.023119 TGATTTGCCTCACACAGTTTGT 58.977 40.909 0.00 0.00 39.97 2.83
2055 2407 9.487790 AGAAAAAGAACAAAATCAAACACTTGA 57.512 25.926 0.00 0.00 45.53 3.02
2058 2410 8.720562 CCAAGAAAAAGAACAAAATCAAACACT 58.279 29.630 0.00 0.00 0.00 3.55
2059 2411 8.716909 TCCAAGAAAAAGAACAAAATCAAACAC 58.283 29.630 0.00 0.00 0.00 3.32
2060 2412 8.716909 GTCCAAGAAAAAGAACAAAATCAAACA 58.283 29.630 0.00 0.00 0.00 2.83
2061 2413 8.716909 TGTCCAAGAAAAAGAACAAAATCAAAC 58.283 29.630 0.00 0.00 0.00 2.93
2062 2414 8.839310 TGTCCAAGAAAAAGAACAAAATCAAA 57.161 26.923 0.00 0.00 0.00 2.69
2063 2415 8.881743 CATGTCCAAGAAAAAGAACAAAATCAA 58.118 29.630 0.00 0.00 0.00 2.57
2116 2471 4.393778 GACCCCTGGTCCTCCCGA 62.394 72.222 1.68 0.00 46.19 5.14
2149 2521 8.508875 CCAGGTATTGTTTGTTTATAAACGAGT 58.491 33.333 20.51 10.40 42.11 4.18
2150 2522 7.483691 GCCAGGTATTGTTTGTTTATAAACGAG 59.516 37.037 20.51 6.77 42.11 4.18
2151 2523 7.306953 GCCAGGTATTGTTTGTTTATAAACGA 58.693 34.615 20.51 17.10 42.11 3.85
2152 2524 6.528774 GGCCAGGTATTGTTTGTTTATAAACG 59.471 38.462 20.51 5.54 42.11 3.60
2153 2525 7.379750 TGGCCAGGTATTGTTTGTTTATAAAC 58.620 34.615 19.44 19.44 40.18 2.01
2154 2526 7.540474 TGGCCAGGTATTGTTTGTTTATAAA 57.460 32.000 0.00 0.00 0.00 1.40
2155 2527 7.540474 TTGGCCAGGTATTGTTTGTTTATAA 57.460 32.000 5.11 0.00 0.00 0.98
2156 2528 6.350612 GCTTGGCCAGGTATTGTTTGTTTATA 60.351 38.462 17.25 0.00 0.00 0.98
2157 2529 5.568624 GCTTGGCCAGGTATTGTTTGTTTAT 60.569 40.000 17.25 0.00 0.00 1.40
2158 2530 4.262249 GCTTGGCCAGGTATTGTTTGTTTA 60.262 41.667 17.25 0.00 0.00 2.01
2159 2531 3.494223 GCTTGGCCAGGTATTGTTTGTTT 60.494 43.478 17.25 0.00 0.00 2.83
2160 2532 2.037121 GCTTGGCCAGGTATTGTTTGTT 59.963 45.455 17.25 0.00 0.00 2.83
2161 2533 1.618343 GCTTGGCCAGGTATTGTTTGT 59.382 47.619 17.25 0.00 0.00 2.83
2162 2534 2.368655 GCTTGGCCAGGTATTGTTTG 57.631 50.000 17.25 0.00 0.00 2.93
2183 2555 1.856629 ATGGAAAACCATCAGGCCAG 58.143 50.000 5.01 0.00 39.06 4.85
2332 2705 4.142816 CGGGCAAATAAGTCTGAACTTCTG 60.143 45.833 0.00 0.00 44.64 3.02
2355 2737 4.752594 TAGTCCCACCCTGCCCCC 62.753 72.222 0.00 0.00 0.00 5.40
2362 2744 1.067071 CGTGAAAGTCTAGTCCCACCC 60.067 57.143 0.00 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.