Multiple sequence alignment - TraesCS1A01G079600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G079600 chr1A 100.000 3173 0 0 1 3173 62574702 62577874 0.000000e+00 5860.0
1 TraesCS1A01G079600 chr1A 85.574 305 32 9 165 466 257420956 257421251 3.070000e-80 309.0
2 TraesCS1A01G079600 chr1D 95.680 1898 77 4 739 2632 63607349 63609245 0.000000e+00 3046.0
3 TraesCS1A01G079600 chr1D 95.188 478 21 2 2692 3168 63609250 63609726 0.000000e+00 754.0
4 TraesCS1A01G079600 chr1D 93.478 46 3 0 2645 2690 468593329 468593374 5.680000e-08 69.4
5 TraesCS1A01G079600 chr1D 84.615 65 9 1 2637 2700 446426908 446426972 2.640000e-06 63.9
6 TraesCS1A01G079600 chr1B 95.021 1908 82 9 731 2632 104347878 104349778 0.000000e+00 2985.0
7 TraesCS1A01G079600 chr1B 95.178 477 19 2 2692 3167 104349781 104350254 0.000000e+00 750.0
8 TraesCS1A01G079600 chr1B 84.156 486 51 22 165 638 297087008 297087479 6.240000e-122 448.0
9 TraesCS1A01G079600 chr2D 88.991 109 11 1 2480 2588 624231454 624231561 1.990000e-27 134.0
10 TraesCS1A01G079600 chr4B 82.993 147 22 3 2481 2625 34729973 34729828 2.570000e-26 130.0
11 TraesCS1A01G079600 chr4B 83.333 108 15 3 2483 2588 498391507 498391613 2.610000e-16 97.1
12 TraesCS1A01G079600 chr4B 97.826 46 1 0 2645 2690 114688921 114688966 2.620000e-11 80.5
13 TraesCS1A01G079600 chr5D 86.239 109 12 3 2481 2588 398108464 398108570 7.190000e-22 115.0
14 TraesCS1A01G079600 chr5A 86.239 109 12 3 2481 2588 503139117 503139223 7.190000e-22 115.0
15 TraesCS1A01G079600 chr4D 82.727 110 16 3 2481 2588 402546418 402546526 9.370000e-16 95.3
16 TraesCS1A01G079600 chr4A 88.608 79 8 1 2481 2559 60035462 60035539 9.370000e-16 95.3
17 TraesCS1A01G079600 chr6B 97.826 46 1 0 2645 2690 518389482 518389527 2.620000e-11 80.5
18 TraesCS1A01G079600 chr6A 94.000 50 3 0 2645 2694 216627108 216627157 3.390000e-10 76.8
19 TraesCS1A01G079600 chr6A 92.453 53 3 1 2645 2696 473366888 473366940 1.220000e-09 75.0
20 TraesCS1A01G079600 chr3D 95.652 46 2 0 2645 2690 79970520 79970475 1.220000e-09 75.0
21 TraesCS1A01G079600 chr6D 93.750 48 3 0 2645 2692 51452652 51452699 4.390000e-09 73.1
22 TraesCS1A01G079600 chr5B 93.750 48 3 0 2645 2692 418470928 418470881 4.390000e-09 73.1
23 TraesCS1A01G079600 chr3A 97.059 34 0 1 2618 2650 566864508 566864541 4.420000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G079600 chr1A 62574702 62577874 3172 False 5860.0 5860 100.0000 1 3173 1 chr1A.!!$F1 3172
1 TraesCS1A01G079600 chr1D 63607349 63609726 2377 False 1900.0 3046 95.4340 739 3168 2 chr1D.!!$F3 2429
2 TraesCS1A01G079600 chr1B 104347878 104350254 2376 False 1867.5 2985 95.0995 731 3167 2 chr1B.!!$F2 2436

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
624 625 0.103026 GCATCGGGGCCTCAAATTTC 59.897 55.0 1.96 0.0 0.0 2.17 F
930 934 0.107945 CCTTTCTTCTCGGCCTCCTG 60.108 60.0 0.00 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1989 1993 1.374252 CGTGCCACCGTAAGCTTCT 60.374 57.895 0.0 0.0 0.0 2.85 R
2675 2682 0.178926 TAAACACTCCCTCCGTCCCA 60.179 55.000 0.0 0.0 0.0 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 9.725019 TTATTCTCATAAATAATCTCATGCCGT 57.275 29.630 0.00 0.00 0.00 5.68
58 59 8.534333 TTCTCATAAATAATCTCATGCCGTAC 57.466 34.615 0.00 0.00 0.00 3.67
59 60 7.097192 TCTCATAAATAATCTCATGCCGTACC 58.903 38.462 0.00 0.00 0.00 3.34
60 61 6.764379 TCATAAATAATCTCATGCCGTACCA 58.236 36.000 0.00 0.00 0.00 3.25
61 62 7.220740 TCATAAATAATCTCATGCCGTACCAA 58.779 34.615 0.00 0.00 0.00 3.67
62 63 7.717436 TCATAAATAATCTCATGCCGTACCAAA 59.283 33.333 0.00 0.00 0.00 3.28
63 64 6.959639 AAATAATCTCATGCCGTACCAAAT 57.040 33.333 0.00 0.00 0.00 2.32
64 65 5.947228 ATAATCTCATGCCGTACCAAATG 57.053 39.130 0.00 0.00 0.00 2.32
65 66 2.779755 TCTCATGCCGTACCAAATGT 57.220 45.000 0.00 0.00 0.00 2.71
66 67 2.355197 TCTCATGCCGTACCAAATGTG 58.645 47.619 0.00 0.00 0.00 3.21
76 77 2.961424 CCAAATGTGGGACTGGGAC 58.039 57.895 0.00 0.00 41.77 4.46
77 78 0.405585 CCAAATGTGGGACTGGGACT 59.594 55.000 0.00 0.00 41.77 3.85
78 79 1.633432 CCAAATGTGGGACTGGGACTA 59.367 52.381 0.00 0.00 41.77 2.59
79 80 2.041081 CCAAATGTGGGACTGGGACTAA 59.959 50.000 0.00 0.00 41.77 2.24
80 81 3.081804 CAAATGTGGGACTGGGACTAAC 58.918 50.000 0.00 0.00 0.00 2.34
81 82 2.038863 ATGTGGGACTGGGACTAACA 57.961 50.000 0.00 0.00 0.00 2.41
82 83 2.038863 TGTGGGACTGGGACTAACAT 57.961 50.000 0.00 0.00 0.00 2.71
83 84 1.628340 TGTGGGACTGGGACTAACATG 59.372 52.381 0.00 0.00 0.00 3.21
84 85 1.628846 GTGGGACTGGGACTAACATGT 59.371 52.381 0.00 0.00 0.00 3.21
85 86 1.906574 TGGGACTGGGACTAACATGTC 59.093 52.381 0.00 0.00 36.31 3.06
86 87 1.906574 GGGACTGGGACTAACATGTCA 59.093 52.381 0.00 0.00 38.61 3.58
87 88 2.354805 GGGACTGGGACTAACATGTCAC 60.355 54.545 0.00 0.00 40.54 3.67
88 89 2.567615 GGACTGGGACTAACATGTCACT 59.432 50.000 0.00 0.00 40.75 3.41
89 90 3.008049 GGACTGGGACTAACATGTCACTT 59.992 47.826 0.00 0.00 40.75 3.16
90 91 4.246458 GACTGGGACTAACATGTCACTTC 58.754 47.826 0.00 0.00 40.75 3.01
91 92 3.904339 ACTGGGACTAACATGTCACTTCT 59.096 43.478 0.00 0.00 40.75 2.85
92 93 4.021016 ACTGGGACTAACATGTCACTTCTC 60.021 45.833 0.00 0.00 40.75 2.87
93 94 3.901222 TGGGACTAACATGTCACTTCTCA 59.099 43.478 0.00 0.00 40.75 3.27
94 95 4.346709 TGGGACTAACATGTCACTTCTCAA 59.653 41.667 0.00 0.00 40.75 3.02
95 96 4.932200 GGGACTAACATGTCACTTCTCAAG 59.068 45.833 0.00 0.00 37.39 3.02
96 97 5.511545 GGGACTAACATGTCACTTCTCAAGT 60.512 44.000 0.00 0.00 44.06 3.16
97 98 6.295123 GGGACTAACATGTCACTTCTCAAGTA 60.295 42.308 0.00 0.00 40.46 2.24
98 99 7.324178 GGACTAACATGTCACTTCTCAAGTAT 58.676 38.462 0.00 0.00 40.46 2.12
99 100 8.467598 GGACTAACATGTCACTTCTCAAGTATA 58.532 37.037 0.00 0.00 40.46 1.47
100 101 9.856488 GACTAACATGTCACTTCTCAAGTATAA 57.144 33.333 0.00 0.00 40.46 0.98
103 104 8.723942 AACATGTCACTTCTCAAGTATAATCC 57.276 34.615 0.00 0.00 40.46 3.01
104 105 7.275920 ACATGTCACTTCTCAAGTATAATCCC 58.724 38.462 0.00 0.00 40.46 3.85
105 106 7.126421 ACATGTCACTTCTCAAGTATAATCCCT 59.874 37.037 0.00 0.00 40.46 4.20
106 107 7.113658 TGTCACTTCTCAAGTATAATCCCTC 57.886 40.000 0.00 0.00 40.46 4.30
107 108 6.667848 TGTCACTTCTCAAGTATAATCCCTCA 59.332 38.462 0.00 0.00 40.46 3.86
108 109 7.180229 TGTCACTTCTCAAGTATAATCCCTCAA 59.820 37.037 0.00 0.00 40.46 3.02
109 110 8.041323 GTCACTTCTCAAGTATAATCCCTCAAA 58.959 37.037 0.00 0.00 40.46 2.69
110 111 8.041323 TCACTTCTCAAGTATAATCCCTCAAAC 58.959 37.037 0.00 0.00 40.46 2.93
111 112 7.824289 CACTTCTCAAGTATAATCCCTCAAACA 59.176 37.037 0.00 0.00 40.46 2.83
112 113 8.383175 ACTTCTCAAGTATAATCCCTCAAACAA 58.617 33.333 0.00 0.00 40.69 2.83
113 114 8.561738 TTCTCAAGTATAATCCCTCAAACAAC 57.438 34.615 0.00 0.00 0.00 3.32
114 115 7.918076 TCTCAAGTATAATCCCTCAAACAACT 58.082 34.615 0.00 0.00 0.00 3.16
115 116 8.041323 TCTCAAGTATAATCCCTCAAACAACTC 58.959 37.037 0.00 0.00 0.00 3.01
116 117 7.110155 TCAAGTATAATCCCTCAAACAACTCC 58.890 38.462 0.00 0.00 0.00 3.85
117 118 6.636454 AGTATAATCCCTCAAACAACTCCA 57.364 37.500 0.00 0.00 0.00 3.86
118 119 7.213178 AGTATAATCCCTCAAACAACTCCAT 57.787 36.000 0.00 0.00 0.00 3.41
119 120 7.283329 AGTATAATCCCTCAAACAACTCCATC 58.717 38.462 0.00 0.00 0.00 3.51
120 121 4.664688 AATCCCTCAAACAACTCCATCT 57.335 40.909 0.00 0.00 0.00 2.90
121 122 3.703001 TCCCTCAAACAACTCCATCTC 57.297 47.619 0.00 0.00 0.00 2.75
122 123 2.978978 TCCCTCAAACAACTCCATCTCA 59.021 45.455 0.00 0.00 0.00 3.27
123 124 3.588842 TCCCTCAAACAACTCCATCTCAT 59.411 43.478 0.00 0.00 0.00 2.90
124 125 4.782691 TCCCTCAAACAACTCCATCTCATA 59.217 41.667 0.00 0.00 0.00 2.15
125 126 5.250543 TCCCTCAAACAACTCCATCTCATAA 59.749 40.000 0.00 0.00 0.00 1.90
126 127 5.945784 CCCTCAAACAACTCCATCTCATAAA 59.054 40.000 0.00 0.00 0.00 1.40
127 128 6.604795 CCCTCAAACAACTCCATCTCATAAAT 59.395 38.462 0.00 0.00 0.00 1.40
128 129 7.123247 CCCTCAAACAACTCCATCTCATAAATT 59.877 37.037 0.00 0.00 0.00 1.82
129 130 8.186821 CCTCAAACAACTCCATCTCATAAATTC 58.813 37.037 0.00 0.00 0.00 2.17
130 131 8.055279 TCAAACAACTCCATCTCATAAATTCC 57.945 34.615 0.00 0.00 0.00 3.01
131 132 7.122650 TCAAACAACTCCATCTCATAAATTCCC 59.877 37.037 0.00 0.00 0.00 3.97
132 133 6.078456 ACAACTCCATCTCATAAATTCCCA 57.922 37.500 0.00 0.00 0.00 4.37
133 134 5.888161 ACAACTCCATCTCATAAATTCCCAC 59.112 40.000 0.00 0.00 0.00 4.61
134 135 5.983333 ACTCCATCTCATAAATTCCCACT 57.017 39.130 0.00 0.00 0.00 4.00
135 136 5.934781 ACTCCATCTCATAAATTCCCACTC 58.065 41.667 0.00 0.00 0.00 3.51
136 137 5.163152 ACTCCATCTCATAAATTCCCACTCC 60.163 44.000 0.00 0.00 0.00 3.85
137 138 4.104738 TCCATCTCATAAATTCCCACTCCC 59.895 45.833 0.00 0.00 0.00 4.30
138 139 4.105377 CCATCTCATAAATTCCCACTCCCT 59.895 45.833 0.00 0.00 0.00 4.20
139 140 5.399497 CCATCTCATAAATTCCCACTCCCTT 60.399 44.000 0.00 0.00 0.00 3.95
140 141 5.796502 TCTCATAAATTCCCACTCCCTTT 57.203 39.130 0.00 0.00 0.00 3.11
141 142 5.755849 TCTCATAAATTCCCACTCCCTTTC 58.244 41.667 0.00 0.00 0.00 2.62
142 143 4.867086 TCATAAATTCCCACTCCCTTTCC 58.133 43.478 0.00 0.00 0.00 3.13
143 144 2.623418 AAATTCCCACTCCCTTTCCC 57.377 50.000 0.00 0.00 0.00 3.97
144 145 1.773541 AATTCCCACTCCCTTTCCCT 58.226 50.000 0.00 0.00 0.00 4.20
145 146 1.773541 ATTCCCACTCCCTTTCCCTT 58.226 50.000 0.00 0.00 0.00 3.95
146 147 2.444033 TTCCCACTCCCTTTCCCTTA 57.556 50.000 0.00 0.00 0.00 2.69
147 148 2.444033 TCCCACTCCCTTTCCCTTAA 57.556 50.000 0.00 0.00 0.00 1.85
148 149 2.720896 TCCCACTCCCTTTCCCTTAAA 58.279 47.619 0.00 0.00 0.00 1.52
149 150 2.377531 TCCCACTCCCTTTCCCTTAAAC 59.622 50.000 0.00 0.00 0.00 2.01
150 151 2.378886 CCCACTCCCTTTCCCTTAAACT 59.621 50.000 0.00 0.00 0.00 2.66
151 152 3.590182 CCCACTCCCTTTCCCTTAAACTA 59.410 47.826 0.00 0.00 0.00 2.24
152 153 4.567116 CCCACTCCCTTTCCCTTAAACTAC 60.567 50.000 0.00 0.00 0.00 2.73
153 154 4.567116 CCACTCCCTTTCCCTTAAACTACC 60.567 50.000 0.00 0.00 0.00 3.18
154 155 4.042435 CACTCCCTTTCCCTTAAACTACCA 59.958 45.833 0.00 0.00 0.00 3.25
155 156 4.666431 ACTCCCTTTCCCTTAAACTACCAA 59.334 41.667 0.00 0.00 0.00 3.67
156 157 4.989277 TCCCTTTCCCTTAAACTACCAAC 58.011 43.478 0.00 0.00 0.00 3.77
157 158 4.416179 TCCCTTTCCCTTAAACTACCAACA 59.584 41.667 0.00 0.00 0.00 3.33
158 159 5.075344 TCCCTTTCCCTTAAACTACCAACAT 59.925 40.000 0.00 0.00 0.00 2.71
159 160 5.185056 CCCTTTCCCTTAAACTACCAACATG 59.815 44.000 0.00 0.00 0.00 3.21
160 161 5.773176 CCTTTCCCTTAAACTACCAACATGT 59.227 40.000 0.00 0.00 0.00 3.21
161 162 6.266786 CCTTTCCCTTAAACTACCAACATGTT 59.733 38.462 4.92 4.92 0.00 2.71
162 163 6.642707 TTCCCTTAAACTACCAACATGTTG 57.357 37.500 28.18 28.18 40.13 3.33
163 164 4.521256 TCCCTTAAACTACCAACATGTTGC 59.479 41.667 29.42 0.00 39.16 4.17
164 165 4.279671 CCCTTAAACTACCAACATGTTGCA 59.720 41.667 29.42 18.90 39.16 4.08
165 166 5.221342 CCCTTAAACTACCAACATGTTGCAA 60.221 40.000 29.42 18.86 39.16 4.08
166 167 6.276847 CCTTAAACTACCAACATGTTGCAAA 58.723 36.000 29.42 16.66 39.16 3.68
167 168 6.420604 CCTTAAACTACCAACATGTTGCAAAG 59.579 38.462 29.42 24.91 39.16 2.77
168 169 4.320608 AACTACCAACATGTTGCAAAGG 57.679 40.909 29.42 19.35 39.16 3.11
169 170 3.295973 ACTACCAACATGTTGCAAAGGT 58.704 40.909 29.42 23.44 39.16 3.50
170 171 4.465886 ACTACCAACATGTTGCAAAGGTA 58.534 39.130 29.42 23.32 39.16 3.08
171 172 5.076873 ACTACCAACATGTTGCAAAGGTAT 58.923 37.500 29.42 14.02 39.16 2.73
172 173 4.255833 ACCAACATGTTGCAAAGGTATG 57.744 40.909 29.42 16.30 39.16 2.39
173 174 3.894427 ACCAACATGTTGCAAAGGTATGA 59.106 39.130 29.42 0.00 39.16 2.15
174 175 4.527816 ACCAACATGTTGCAAAGGTATGAT 59.472 37.500 29.42 0.24 39.16 2.45
175 176 5.714333 ACCAACATGTTGCAAAGGTATGATA 59.286 36.000 29.42 0.00 39.16 2.15
176 177 6.380846 ACCAACATGTTGCAAAGGTATGATAT 59.619 34.615 29.42 0.00 39.16 1.63
177 178 7.559533 ACCAACATGTTGCAAAGGTATGATATA 59.440 33.333 29.42 0.00 39.16 0.86
178 179 7.862372 CCAACATGTTGCAAAGGTATGATATAC 59.138 37.037 29.42 0.00 39.16 1.47
179 180 7.510549 ACATGTTGCAAAGGTATGATATACC 57.489 36.000 16.39 9.47 37.86 2.73
180 181 6.204688 ACATGTTGCAAAGGTATGATATACCG 59.795 38.462 16.39 1.09 42.26 4.02
181 182 5.676552 TGTTGCAAAGGTATGATATACCGT 58.323 37.500 0.00 6.51 42.26 4.83
182 183 5.525745 TGTTGCAAAGGTATGATATACCGTG 59.474 40.000 0.00 13.37 42.26 4.94
183 184 4.062293 TGCAAAGGTATGATATACCGTGC 58.938 43.478 26.04 26.04 45.46 5.34
184 185 4.202315 TGCAAAGGTATGATATACCGTGCT 60.202 41.667 29.08 9.96 45.46 4.40
185 186 4.755123 GCAAAGGTATGATATACCGTGCTT 59.245 41.667 25.78 11.01 43.69 3.91
186 187 5.238650 GCAAAGGTATGATATACCGTGCTTT 59.761 40.000 25.78 14.61 43.69 3.51
187 188 6.565999 GCAAAGGTATGATATACCGTGCTTTC 60.566 42.308 25.78 10.49 43.69 2.62
188 189 4.806330 AGGTATGATATACCGTGCTTTCG 58.194 43.478 11.26 0.00 42.26 3.46
189 190 3.367025 GGTATGATATACCGTGCTTTCGC 59.633 47.826 2.51 0.00 0.00 4.70
190 191 2.588027 TGATATACCGTGCTTTCGCA 57.412 45.000 0.00 0.00 45.60 5.10
191 192 8.464179 AGGTATGATATACCGTGCTTTCGCAT 62.464 42.308 11.26 0.00 40.86 4.73
192 193 9.187303 AGGTATGATATACCGTGCTTTCGCATA 62.187 40.741 11.26 0.00 40.86 3.14
201 202 2.594321 TGCTTTCGCATATGTGTTTGC 58.406 42.857 15.62 16.31 42.25 3.68
202 203 2.228582 TGCTTTCGCATATGTGTTTGCT 59.771 40.909 15.62 0.00 42.25 3.91
203 204 3.244976 GCTTTCGCATATGTGTTTGCTT 58.755 40.909 15.62 0.00 36.71 3.91
204 205 3.674753 GCTTTCGCATATGTGTTTGCTTT 59.325 39.130 15.62 0.00 36.71 3.51
205 206 4.433283 GCTTTCGCATATGTGTTTGCTTTG 60.433 41.667 15.62 1.62 36.71 2.77
206 207 3.913548 TCGCATATGTGTTTGCTTTGT 57.086 38.095 15.62 0.00 36.71 2.83
207 208 3.563508 TCGCATATGTGTTTGCTTTGTG 58.436 40.909 15.62 0.00 36.71 3.33
208 209 3.004210 TCGCATATGTGTTTGCTTTGTGT 59.996 39.130 15.62 0.00 36.71 3.72
209 210 4.214332 TCGCATATGTGTTTGCTTTGTGTA 59.786 37.500 15.62 0.00 36.71 2.90
210 211 4.320690 CGCATATGTGTTTGCTTTGTGTAC 59.679 41.667 8.16 0.00 36.71 2.90
211 212 5.218885 GCATATGTGTTTGCTTTGTGTACA 58.781 37.500 4.29 0.00 35.95 2.90
212 213 5.863397 GCATATGTGTTTGCTTTGTGTACAT 59.137 36.000 0.00 0.00 35.95 2.29
213 214 6.183360 GCATATGTGTTTGCTTTGTGTACATG 60.183 38.462 0.00 0.00 35.95 3.21
214 215 4.972514 TGTGTTTGCTTTGTGTACATGA 57.027 36.364 0.00 0.00 0.00 3.07
215 216 4.667262 TGTGTTTGCTTTGTGTACATGAC 58.333 39.130 0.00 0.00 0.00 3.06
216 217 4.397730 TGTGTTTGCTTTGTGTACATGACT 59.602 37.500 0.00 0.00 0.00 3.41
217 218 5.586643 TGTGTTTGCTTTGTGTACATGACTA 59.413 36.000 0.00 0.00 0.00 2.59
218 219 5.907391 GTGTTTGCTTTGTGTACATGACTAC 59.093 40.000 0.00 0.00 0.00 2.73
219 220 5.586643 TGTTTGCTTTGTGTACATGACTACA 59.413 36.000 0.00 0.00 0.00 2.74
220 221 6.262049 TGTTTGCTTTGTGTACATGACTACAT 59.738 34.615 0.00 0.00 37.19 2.29
242 243 8.954950 ACATGTTCTATAGAAGATCAACAAGG 57.045 34.615 19.45 10.83 37.45 3.61
243 244 7.989741 ACATGTTCTATAGAAGATCAACAAGGG 59.010 37.037 19.45 10.25 37.45 3.95
244 245 7.733773 TGTTCTATAGAAGATCAACAAGGGA 57.266 36.000 15.58 0.00 32.20 4.20
245 246 8.146053 TGTTCTATAGAAGATCAACAAGGGAA 57.854 34.615 15.58 0.00 32.20 3.97
246 247 8.772250 TGTTCTATAGAAGATCAACAAGGGAAT 58.228 33.333 15.58 0.00 32.20 3.01
247 248 9.050601 GTTCTATAGAAGATCAACAAGGGAATG 57.949 37.037 15.58 0.00 34.27 2.67
248 249 8.553085 TCTATAGAAGATCAACAAGGGAATGA 57.447 34.615 0.00 0.00 0.00 2.57
249 250 8.646004 TCTATAGAAGATCAACAAGGGAATGAG 58.354 37.037 0.00 0.00 0.00 2.90
250 251 4.268359 AGAAGATCAACAAGGGAATGAGC 58.732 43.478 0.00 0.00 0.00 4.26
251 252 3.726557 AGATCAACAAGGGAATGAGCA 57.273 42.857 0.00 0.00 32.15 4.26
252 253 4.246712 AGATCAACAAGGGAATGAGCAT 57.753 40.909 0.00 0.00 32.15 3.79
253 254 5.378230 AGATCAACAAGGGAATGAGCATA 57.622 39.130 0.00 0.00 32.15 3.14
254 255 5.128919 AGATCAACAAGGGAATGAGCATAC 58.871 41.667 0.00 0.00 32.15 2.39
255 256 3.270027 TCAACAAGGGAATGAGCATACG 58.730 45.455 0.00 0.00 0.00 3.06
256 257 3.055458 TCAACAAGGGAATGAGCATACGA 60.055 43.478 0.00 0.00 0.00 3.43
257 258 3.627395 ACAAGGGAATGAGCATACGAA 57.373 42.857 0.00 0.00 0.00 3.85
258 259 4.156455 ACAAGGGAATGAGCATACGAAT 57.844 40.909 0.00 0.00 0.00 3.34
259 260 5.290493 ACAAGGGAATGAGCATACGAATA 57.710 39.130 0.00 0.00 0.00 1.75
260 261 5.680619 ACAAGGGAATGAGCATACGAATAA 58.319 37.500 0.00 0.00 0.00 1.40
261 262 6.299141 ACAAGGGAATGAGCATACGAATAAT 58.701 36.000 0.00 0.00 0.00 1.28
262 263 6.772716 ACAAGGGAATGAGCATACGAATAATT 59.227 34.615 0.00 0.00 0.00 1.40
263 264 7.041098 ACAAGGGAATGAGCATACGAATAATTC 60.041 37.037 0.00 0.00 0.00 2.17
264 265 6.533730 AGGGAATGAGCATACGAATAATTCA 58.466 36.000 0.00 0.00 0.00 2.57
265 266 7.170965 AGGGAATGAGCATACGAATAATTCAT 58.829 34.615 0.00 0.00 0.00 2.57
266 267 7.335422 AGGGAATGAGCATACGAATAATTCATC 59.665 37.037 0.00 0.00 0.00 2.92
267 268 7.335422 GGGAATGAGCATACGAATAATTCATCT 59.665 37.037 0.00 0.00 0.00 2.90
268 269 8.725148 GGAATGAGCATACGAATAATTCATCTT 58.275 33.333 0.00 0.00 0.00 2.40
321 322 9.997482 TTTATAAATTGATAGTGGCGACTTTTC 57.003 29.630 6.71 5.67 33.21 2.29
322 323 7.865706 ATAAATTGATAGTGGCGACTTTTCT 57.134 32.000 6.71 0.00 33.21 2.52
323 324 8.958119 ATAAATTGATAGTGGCGACTTTTCTA 57.042 30.769 6.71 2.68 33.21 2.10
324 325 7.681939 AAATTGATAGTGGCGACTTTTCTAA 57.318 32.000 6.71 3.52 33.21 2.10
325 326 7.681939 AATTGATAGTGGCGACTTTTCTAAA 57.318 32.000 6.71 0.00 33.21 1.85
326 327 6.721571 TTGATAGTGGCGACTTTTCTAAAG 57.278 37.500 6.71 0.00 33.21 1.85
327 328 5.790593 TGATAGTGGCGACTTTTCTAAAGT 58.209 37.500 6.71 4.59 33.21 2.66
328 329 6.927416 TGATAGTGGCGACTTTTCTAAAGTA 58.073 36.000 6.71 0.00 33.21 2.24
329 330 7.033791 TGATAGTGGCGACTTTTCTAAAGTAG 58.966 38.462 6.71 6.45 33.21 2.57
330 331 5.464030 AGTGGCGACTTTTCTAAAGTAGA 57.536 39.130 14.04 0.00 0.00 2.59
331 332 5.850614 AGTGGCGACTTTTCTAAAGTAGAA 58.149 37.500 14.04 0.00 42.68 2.10
360 361 9.427821 AAGATGGTAGTGAATAATACTCTGAGT 57.572 33.333 15.57 15.57 0.00 3.41
361 362 8.855110 AGATGGTAGTGAATAATACTCTGAGTG 58.145 37.037 20.19 0.00 0.00 3.51
362 363 7.348080 TGGTAGTGAATAATACTCTGAGTGG 57.652 40.000 20.19 0.00 0.00 4.00
363 364 6.895756 TGGTAGTGAATAATACTCTGAGTGGT 59.104 38.462 20.19 10.00 0.00 4.16
364 365 8.057011 TGGTAGTGAATAATACTCTGAGTGGTA 58.943 37.037 20.19 11.78 0.00 3.25
365 366 9.080097 GGTAGTGAATAATACTCTGAGTGGTAT 57.920 37.037 20.19 13.39 0.00 2.73
374 375 8.768501 AATACTCTGAGTGGTATCTATTGACA 57.231 34.615 20.19 0.00 0.00 3.58
375 376 8.948401 ATACTCTGAGTGGTATCTATTGACAT 57.052 34.615 20.19 0.00 0.00 3.06
376 377 7.283625 ACTCTGAGTGGTATCTATTGACATC 57.716 40.000 10.00 0.00 0.00 3.06
377 378 6.266558 ACTCTGAGTGGTATCTATTGACATCC 59.733 42.308 10.00 0.00 0.00 3.51
378 379 6.377080 TCTGAGTGGTATCTATTGACATCCT 58.623 40.000 0.00 0.00 0.00 3.24
379 380 7.526918 TCTGAGTGGTATCTATTGACATCCTA 58.473 38.462 0.00 0.00 0.00 2.94
380 381 8.173412 TCTGAGTGGTATCTATTGACATCCTAT 58.827 37.037 0.00 0.00 0.00 2.57
381 382 8.127150 TGAGTGGTATCTATTGACATCCTATG 57.873 38.462 0.00 0.00 0.00 2.23
382 383 6.940739 AGTGGTATCTATTGACATCCTATGC 58.059 40.000 0.00 0.00 0.00 3.14
383 384 6.728164 AGTGGTATCTATTGACATCCTATGCT 59.272 38.462 0.00 0.00 0.00 3.79
384 385 7.895962 AGTGGTATCTATTGACATCCTATGCTA 59.104 37.037 0.00 0.00 0.00 3.49
385 386 8.531982 GTGGTATCTATTGACATCCTATGCTAA 58.468 37.037 0.00 0.00 0.00 3.09
386 387 9.271921 TGGTATCTATTGACATCCTATGCTAAT 57.728 33.333 0.00 0.00 0.00 1.73
391 392 9.851686 TCTATTGACATCCTATGCTAATTTTGT 57.148 29.630 0.00 0.00 0.00 2.83
396 397 9.407380 TGACATCCTATGCTAATTTTGTTATGT 57.593 29.630 0.00 0.00 0.00 2.29
399 400 9.385902 CATCCTATGCTAATTTTGTTATGTTCG 57.614 33.333 0.00 0.00 0.00 3.95
400 401 8.500753 TCCTATGCTAATTTTGTTATGTTCGT 57.499 30.769 0.00 0.00 0.00 3.85
401 402 9.602568 TCCTATGCTAATTTTGTTATGTTCGTA 57.397 29.630 0.00 0.00 0.00 3.43
405 406 9.935682 ATGCTAATTTTGTTATGTTCGTATGAG 57.064 29.630 0.00 0.00 0.00 2.90
406 407 7.908082 TGCTAATTTTGTTATGTTCGTATGAGC 59.092 33.333 0.00 0.00 0.00 4.26
407 408 7.908082 GCTAATTTTGTTATGTTCGTATGAGCA 59.092 33.333 3.79 3.79 39.78 4.26
408 409 9.767684 CTAATTTTGTTATGTTCGTATGAGCAA 57.232 29.630 5.52 0.00 38.89 3.91
410 411 9.638239 AATTTTGTTATGTTCGTATGAGCAAAT 57.362 25.926 5.52 0.00 38.89 2.32
411 412 9.638239 ATTTTGTTATGTTCGTATGAGCAAATT 57.362 25.926 5.52 0.00 38.89 1.82
415 416 9.715123 TGTTATGTTCGTATGAGCAAATTATTG 57.285 29.630 5.52 0.00 38.89 1.90
416 417 9.716507 GTTATGTTCGTATGAGCAAATTATTGT 57.283 29.630 5.52 0.00 38.89 2.71
419 420 9.935682 ATGTTCGTATGAGCAAATTATTGTTAG 57.064 29.630 5.52 0.00 38.89 2.34
420 421 8.941977 TGTTCGTATGAGCAAATTATTGTTAGT 58.058 29.630 0.00 0.00 38.85 2.24
421 422 9.769093 GTTCGTATGAGCAAATTATTGTTAGTT 57.231 29.630 0.00 0.00 38.85 2.24
497 498 9.754382 AAAATGATGATATCTATTTTGCCACAC 57.246 29.630 17.32 0.00 33.23 3.82
498 499 8.701908 AATGATGATATCTATTTTGCCACACT 57.298 30.769 3.98 0.00 0.00 3.55
499 500 9.797642 AATGATGATATCTATTTTGCCACACTA 57.202 29.630 3.98 0.00 0.00 2.74
500 501 9.797642 ATGATGATATCTATTTTGCCACACTAA 57.202 29.630 3.98 0.00 0.00 2.24
501 502 9.625747 TGATGATATCTATTTTGCCACACTAAA 57.374 29.630 3.98 0.00 0.00 1.85
530 531 8.488651 ACAATTTTCTCCTACCACTATTTACG 57.511 34.615 0.00 0.00 0.00 3.18
531 532 8.316214 ACAATTTTCTCCTACCACTATTTACGA 58.684 33.333 0.00 0.00 0.00 3.43
532 533 8.818057 CAATTTTCTCCTACCACTATTTACGAG 58.182 37.037 0.00 0.00 0.00 4.18
533 534 7.472334 TTTTCTCCTACCACTATTTACGAGT 57.528 36.000 0.00 0.00 0.00 4.18
534 535 6.446781 TTCTCCTACCACTATTTACGAGTG 57.553 41.667 0.00 0.00 43.32 3.51
542 543 5.006153 CACTATTTACGAGTGGTCATCCA 57.994 43.478 0.00 0.00 40.58 3.41
543 544 5.601662 CACTATTTACGAGTGGTCATCCAT 58.398 41.667 0.00 0.00 46.20 3.41
544 545 5.692204 CACTATTTACGAGTGGTCATCCATC 59.308 44.000 0.00 0.00 46.20 3.51
545 546 2.863401 TTACGAGTGGTCATCCATCG 57.137 50.000 13.20 13.20 46.20 3.84
546 547 2.047002 TACGAGTGGTCATCCATCGA 57.953 50.000 18.12 0.00 46.20 3.59
547 548 1.403814 ACGAGTGGTCATCCATCGAT 58.596 50.000 18.12 0.00 46.20 3.59
548 549 2.583143 ACGAGTGGTCATCCATCGATA 58.417 47.619 18.12 0.00 46.20 2.92
549 550 3.157881 ACGAGTGGTCATCCATCGATAT 58.842 45.455 18.12 0.00 46.20 1.63
550 551 3.574396 ACGAGTGGTCATCCATCGATATT 59.426 43.478 18.12 0.00 46.20 1.28
551 552 4.039245 ACGAGTGGTCATCCATCGATATTT 59.961 41.667 18.12 0.00 46.20 1.40
552 553 5.243060 ACGAGTGGTCATCCATCGATATTTA 59.757 40.000 18.12 0.00 46.20 1.40
553 554 5.802451 CGAGTGGTCATCCATCGATATTTAG 59.198 44.000 0.00 0.00 46.20 1.85
554 555 6.349363 CGAGTGGTCATCCATCGATATTTAGA 60.349 42.308 0.00 0.00 46.20 2.10
555 556 7.303182 AGTGGTCATCCATCGATATTTAGAA 57.697 36.000 0.00 0.00 46.20 2.10
556 557 7.735917 AGTGGTCATCCATCGATATTTAGAAA 58.264 34.615 0.00 0.00 46.20 2.52
557 558 7.875041 AGTGGTCATCCATCGATATTTAGAAAG 59.125 37.037 0.00 0.00 46.20 2.62
558 559 6.650807 TGGTCATCCATCGATATTTAGAAAGC 59.349 38.462 0.00 0.00 39.03 3.51
559 560 6.876257 GGTCATCCATCGATATTTAGAAAGCT 59.124 38.462 0.00 0.00 0.00 3.74
560 561 8.035394 GGTCATCCATCGATATTTAGAAAGCTA 58.965 37.037 0.00 0.00 0.00 3.32
561 562 8.865001 GTCATCCATCGATATTTAGAAAGCTAC 58.135 37.037 0.00 0.00 0.00 3.58
562 563 7.755373 TCATCCATCGATATTTAGAAAGCTACG 59.245 37.037 0.00 0.00 0.00 3.51
563 564 7.210718 TCCATCGATATTTAGAAAGCTACGA 57.789 36.000 0.00 0.00 0.00 3.43
564 565 7.082602 TCCATCGATATTTAGAAAGCTACGAC 58.917 38.462 0.00 0.00 0.00 4.34
565 566 6.861572 CCATCGATATTTAGAAAGCTACGACA 59.138 38.462 0.00 0.00 0.00 4.35
566 567 7.148950 CCATCGATATTTAGAAAGCTACGACAC 60.149 40.741 0.00 0.00 0.00 3.67
567 568 6.788243 TCGATATTTAGAAAGCTACGACACA 58.212 36.000 0.00 0.00 0.00 3.72
568 569 6.690098 TCGATATTTAGAAAGCTACGACACAC 59.310 38.462 0.00 0.00 0.00 3.82
583 584 5.864830 CGACACACGTCATTTTTGAATTT 57.135 34.783 0.00 0.00 42.74 1.82
584 585 6.254600 CGACACACGTCATTTTTGAATTTT 57.745 33.333 0.00 0.00 42.74 1.82
585 586 7.370044 CGACACACGTCATTTTTGAATTTTA 57.630 32.000 0.00 0.00 42.74 1.52
586 587 7.822713 CGACACACGTCATTTTTGAATTTTAA 58.177 30.769 0.00 0.00 42.74 1.52
587 588 7.990499 CGACACACGTCATTTTTGAATTTTAAG 59.010 33.333 0.00 0.00 42.74 1.85
588 589 8.125728 ACACACGTCATTTTTGAATTTTAAGG 57.874 30.769 0.00 0.00 0.00 2.69
589 590 7.062848 CACACGTCATTTTTGAATTTTAAGGC 58.937 34.615 0.00 0.00 0.00 4.35
590 591 6.201997 ACACGTCATTTTTGAATTTTAAGGCC 59.798 34.615 0.00 0.00 0.00 5.19
591 592 5.699001 ACGTCATTTTTGAATTTTAAGGCCC 59.301 36.000 0.00 0.00 0.00 5.80
592 593 5.121611 CGTCATTTTTGAATTTTAAGGCCCC 59.878 40.000 0.00 0.00 0.00 5.80
593 594 6.000840 GTCATTTTTGAATTTTAAGGCCCCA 58.999 36.000 0.00 0.00 0.00 4.96
594 595 6.658816 GTCATTTTTGAATTTTAAGGCCCCAT 59.341 34.615 0.00 0.00 0.00 4.00
595 596 6.883756 TCATTTTTGAATTTTAAGGCCCCATC 59.116 34.615 0.00 0.00 0.00 3.51
596 597 6.446909 TTTTTGAATTTTAAGGCCCCATCT 57.553 33.333 0.00 0.00 0.00 2.90
597 598 6.446909 TTTTGAATTTTAAGGCCCCATCTT 57.553 33.333 0.00 0.00 0.00 2.40
598 599 7.560796 TTTTGAATTTTAAGGCCCCATCTTA 57.439 32.000 0.00 0.00 0.00 2.10
599 600 6.790232 TTGAATTTTAAGGCCCCATCTTAG 57.210 37.500 0.00 0.00 0.00 2.18
600 601 6.086011 TGAATTTTAAGGCCCCATCTTAGA 57.914 37.500 0.00 0.00 0.00 2.10
601 602 6.498538 TGAATTTTAAGGCCCCATCTTAGAA 58.501 36.000 0.00 0.00 0.00 2.10
602 603 7.132128 TGAATTTTAAGGCCCCATCTTAGAAT 58.868 34.615 0.00 0.00 34.84 2.40
603 604 7.623278 TGAATTTTAAGGCCCCATCTTAGAATT 59.377 33.333 0.00 4.56 40.75 2.17
604 605 7.603180 ATTTTAAGGCCCCATCTTAGAATTC 57.397 36.000 0.00 0.00 31.63 2.17
605 606 2.938956 AGGCCCCATCTTAGAATTCG 57.061 50.000 0.00 0.00 0.00 3.34
606 607 1.202818 AGGCCCCATCTTAGAATTCGC 60.203 52.381 0.00 0.00 0.00 4.70
607 608 1.476833 GGCCCCATCTTAGAATTCGCA 60.477 52.381 0.00 0.00 0.00 5.10
608 609 2.508526 GCCCCATCTTAGAATTCGCAT 58.491 47.619 0.00 0.00 0.00 4.73
609 610 2.485814 GCCCCATCTTAGAATTCGCATC 59.514 50.000 0.00 0.00 0.00 3.91
610 611 2.738846 CCCCATCTTAGAATTCGCATCG 59.261 50.000 0.00 0.00 0.00 3.84
611 612 2.738846 CCCATCTTAGAATTCGCATCGG 59.261 50.000 0.00 0.00 0.00 4.18
612 613 2.738846 CCATCTTAGAATTCGCATCGGG 59.261 50.000 0.00 0.00 0.00 5.14
613 614 2.526304 TCTTAGAATTCGCATCGGGG 57.474 50.000 0.00 0.00 0.00 5.73
614 615 0.868406 CTTAGAATTCGCATCGGGGC 59.132 55.000 0.00 0.00 0.00 5.80
615 616 0.534203 TTAGAATTCGCATCGGGGCC 60.534 55.000 0.00 0.00 0.00 5.80
616 617 1.407656 TAGAATTCGCATCGGGGCCT 61.408 55.000 0.84 0.00 0.00 5.19
617 618 2.203209 AATTCGCATCGGGGCCTC 60.203 61.111 0.84 0.00 0.00 4.70
618 619 2.940890 GAATTCGCATCGGGGCCTCA 62.941 60.000 1.96 0.00 0.00 3.86
619 620 2.550699 AATTCGCATCGGGGCCTCAA 62.551 55.000 1.96 0.00 0.00 3.02
620 621 2.550699 ATTCGCATCGGGGCCTCAAA 62.551 55.000 1.96 0.00 0.00 2.69
621 622 2.516930 CGCATCGGGGCCTCAAAT 60.517 61.111 1.96 0.00 0.00 2.32
622 623 2.120909 CGCATCGGGGCCTCAAATT 61.121 57.895 1.96 0.00 0.00 1.82
623 624 1.666209 CGCATCGGGGCCTCAAATTT 61.666 55.000 1.96 0.00 0.00 1.82
624 625 0.103026 GCATCGGGGCCTCAAATTTC 59.897 55.000 1.96 0.00 0.00 2.17
625 626 1.767759 CATCGGGGCCTCAAATTTCT 58.232 50.000 1.96 0.00 0.00 2.52
626 627 1.406539 CATCGGGGCCTCAAATTTCTG 59.593 52.381 1.96 0.00 0.00 3.02
627 628 0.695924 TCGGGGCCTCAAATTTCTGA 59.304 50.000 1.96 0.00 0.00 3.27
628 629 1.074727 TCGGGGCCTCAAATTTCTGAA 59.925 47.619 1.96 0.00 0.00 3.02
629 630 1.474077 CGGGGCCTCAAATTTCTGAAG 59.526 52.381 1.96 0.00 0.00 3.02
630 631 2.807676 GGGGCCTCAAATTTCTGAAGA 58.192 47.619 0.84 0.00 0.00 2.87
631 632 3.369175 GGGGCCTCAAATTTCTGAAGAT 58.631 45.455 0.84 0.00 0.00 2.40
632 633 3.131755 GGGGCCTCAAATTTCTGAAGATG 59.868 47.826 0.84 0.00 0.00 2.90
633 634 3.131755 GGGCCTCAAATTTCTGAAGATGG 59.868 47.826 0.84 0.00 0.00 3.51
634 635 3.429960 GGCCTCAAATTTCTGAAGATGGC 60.430 47.826 0.00 0.00 36.27 4.40
635 636 3.429960 GCCTCAAATTTCTGAAGATGGCC 60.430 47.826 0.00 0.00 0.00 5.36
636 637 3.131755 CCTCAAATTTCTGAAGATGGCCC 59.868 47.826 0.00 0.00 0.00 5.80
637 638 4.021916 CTCAAATTTCTGAAGATGGCCCT 58.978 43.478 0.00 0.00 0.00 5.19
638 639 3.765511 TCAAATTTCTGAAGATGGCCCTG 59.234 43.478 0.00 0.00 0.00 4.45
639 640 3.463048 AATTTCTGAAGATGGCCCTGT 57.537 42.857 0.00 0.00 0.00 4.00
640 641 2.978156 TTTCTGAAGATGGCCCTGTT 57.022 45.000 0.00 0.00 0.00 3.16
641 642 2.205022 TTCTGAAGATGGCCCTGTTG 57.795 50.000 0.00 0.00 0.00 3.33
642 643 1.067295 TCTGAAGATGGCCCTGTTGT 58.933 50.000 0.00 0.00 0.00 3.32
643 644 1.425066 TCTGAAGATGGCCCTGTTGTT 59.575 47.619 0.00 0.00 0.00 2.83
644 645 2.158475 TCTGAAGATGGCCCTGTTGTTT 60.158 45.455 0.00 0.00 0.00 2.83
645 646 3.073798 TCTGAAGATGGCCCTGTTGTTTA 59.926 43.478 0.00 0.00 0.00 2.01
646 647 3.420893 TGAAGATGGCCCTGTTGTTTAG 58.579 45.455 0.00 0.00 0.00 1.85
647 648 3.181434 TGAAGATGGCCCTGTTGTTTAGT 60.181 43.478 0.00 0.00 0.00 2.24
648 649 3.525800 AGATGGCCCTGTTGTTTAGTT 57.474 42.857 0.00 0.00 0.00 2.24
649 650 3.421844 AGATGGCCCTGTTGTTTAGTTC 58.578 45.455 0.00 0.00 0.00 3.01
650 651 2.738587 TGGCCCTGTTGTTTAGTTCA 57.261 45.000 0.00 0.00 0.00 3.18
651 652 2.303175 TGGCCCTGTTGTTTAGTTCAC 58.697 47.619 0.00 0.00 0.00 3.18
652 653 2.092103 TGGCCCTGTTGTTTAGTTCACT 60.092 45.455 0.00 0.00 0.00 3.41
653 654 3.136809 TGGCCCTGTTGTTTAGTTCACTA 59.863 43.478 0.00 0.00 0.00 2.74
654 655 3.501062 GGCCCTGTTGTTTAGTTCACTAC 59.499 47.826 0.00 0.00 0.00 2.73
655 656 4.386711 GCCCTGTTGTTTAGTTCACTACT 58.613 43.478 0.00 0.00 41.04 2.57
656 657 4.820173 GCCCTGTTGTTTAGTTCACTACTT 59.180 41.667 0.00 0.00 38.33 2.24
657 658 5.298527 GCCCTGTTGTTTAGTTCACTACTTT 59.701 40.000 0.00 0.00 38.33 2.66
658 659 6.484308 GCCCTGTTGTTTAGTTCACTACTTTA 59.516 38.462 0.00 0.00 38.33 1.85
659 660 7.012610 GCCCTGTTGTTTAGTTCACTACTTTAA 59.987 37.037 0.00 0.00 38.33 1.52
660 661 9.063615 CCCTGTTGTTTAGTTCACTACTTTAAT 57.936 33.333 0.00 0.00 38.33 1.40
661 662 9.878599 CCTGTTGTTTAGTTCACTACTTTAATG 57.121 33.333 0.00 0.00 38.33 1.90
670 671 8.635877 AGTTCACTACTTTAATGATCTAAGCG 57.364 34.615 0.00 0.00 31.29 4.68
671 672 7.707035 AGTTCACTACTTTAATGATCTAAGCGG 59.293 37.037 0.00 0.00 31.29 5.52
672 673 7.108841 TCACTACTTTAATGATCTAAGCGGT 57.891 36.000 0.00 0.00 0.00 5.68
673 674 7.201145 TCACTACTTTAATGATCTAAGCGGTC 58.799 38.462 0.00 0.00 0.00 4.79
674 675 7.068348 TCACTACTTTAATGATCTAAGCGGTCT 59.932 37.037 0.00 0.00 0.00 3.85
675 676 7.707035 CACTACTTTAATGATCTAAGCGGTCTT 59.293 37.037 0.00 0.00 36.35 3.01
676 677 8.910944 ACTACTTTAATGATCTAAGCGGTCTTA 58.089 33.333 0.00 0.00 33.85 2.10
677 678 9.182933 CTACTTTAATGATCTAAGCGGTCTTAC 57.817 37.037 0.00 0.00 33.85 2.34
678 679 7.553334 ACTTTAATGATCTAAGCGGTCTTACA 58.447 34.615 0.00 0.00 33.85 2.41
679 680 8.204836 ACTTTAATGATCTAAGCGGTCTTACAT 58.795 33.333 0.00 0.00 33.85 2.29
680 681 8.958119 TTTAATGATCTAAGCGGTCTTACATT 57.042 30.769 0.00 0.00 35.27 2.71
681 682 8.958119 TTAATGATCTAAGCGGTCTTACATTT 57.042 30.769 0.00 0.00 34.10 2.32
682 683 7.865706 AATGATCTAAGCGGTCTTACATTTT 57.134 32.000 0.00 0.00 30.93 1.82
683 684 7.865706 ATGATCTAAGCGGTCTTACATTTTT 57.134 32.000 0.00 0.00 33.85 1.94
684 685 7.303634 TGATCTAAGCGGTCTTACATTTTTC 57.696 36.000 0.00 0.00 33.85 2.29
685 686 6.876789 TGATCTAAGCGGTCTTACATTTTTCA 59.123 34.615 0.00 0.00 33.85 2.69
686 687 6.721571 TCTAAGCGGTCTTACATTTTTCAG 57.278 37.500 0.00 0.00 33.85 3.02
687 688 6.460781 TCTAAGCGGTCTTACATTTTTCAGA 58.539 36.000 0.00 0.00 33.85 3.27
688 689 5.613358 AAGCGGTCTTACATTTTTCAGAG 57.387 39.130 0.00 0.00 0.00 3.35
689 690 4.003648 AGCGGTCTTACATTTTTCAGAGG 58.996 43.478 0.00 0.00 0.00 3.69
690 691 4.000988 GCGGTCTTACATTTTTCAGAGGA 58.999 43.478 0.00 0.00 0.00 3.71
691 692 4.093556 GCGGTCTTACATTTTTCAGAGGAG 59.906 45.833 0.00 0.00 0.00 3.69
692 693 5.238583 CGGTCTTACATTTTTCAGAGGAGT 58.761 41.667 0.00 0.00 0.00 3.85
693 694 6.395629 CGGTCTTACATTTTTCAGAGGAGTA 58.604 40.000 0.00 0.00 0.00 2.59
694 695 6.872020 CGGTCTTACATTTTTCAGAGGAGTAA 59.128 38.462 0.00 0.00 0.00 2.24
695 696 7.549488 CGGTCTTACATTTTTCAGAGGAGTAAT 59.451 37.037 0.00 0.00 0.00 1.89
696 697 9.232473 GGTCTTACATTTTTCAGAGGAGTAATT 57.768 33.333 0.00 0.00 0.00 1.40
895 899 0.822164 TACGCTGCTAGGTTTCCTCC 59.178 55.000 0.00 0.00 34.61 4.30
898 902 1.202428 CGCTGCTAGGTTTCCTCCTAC 60.202 57.143 0.00 0.00 38.86 3.18
930 934 0.107945 CCTTTCTTCTCGGCCTCCTG 60.108 60.000 0.00 0.00 0.00 3.86
1053 1057 1.127343 GGAGGAGAAGATGGTGGGAG 58.873 60.000 0.00 0.00 0.00 4.30
1108 1112 3.131396 CTGGTTAACGTGAAGCTGAAGT 58.869 45.455 15.63 0.00 0.00 3.01
1125 1129 2.106683 GTTGGTCAAGGATCCGGCG 61.107 63.158 5.98 0.00 0.00 6.46
1187 1191 4.803426 CCACCTGCTCGACCTCGC 62.803 72.222 0.00 0.00 39.60 5.03
1250 1254 1.372997 CCGACAAGTCCGTCCACAG 60.373 63.158 0.00 0.00 31.91 3.66
1422 1426 4.443266 GACCTGCTCGCTCGCCTT 62.443 66.667 0.00 0.00 0.00 4.35
1556 1560 0.108138 CCTGACCACTTCGCCCTTAG 60.108 60.000 0.00 0.00 0.00 2.18
1605 1609 1.231751 TCCACCTCCTCTCCTGGGAT 61.232 60.000 0.00 0.00 31.89 3.85
1853 1857 0.242825 CTGCACCTCACATTGGCAAG 59.757 55.000 5.96 0.50 33.58 4.01
1889 1893 2.079158 CAACGTGAGCAACATGAGGAT 58.921 47.619 0.00 0.00 38.72 3.24
1989 1993 3.490933 GCACACAGACAGTTGTACTCAGA 60.491 47.826 0.00 0.00 0.00 3.27
2062 2066 3.643320 TGTTGCTATCAGGGAGGAGTATG 59.357 47.826 0.00 0.00 0.00 2.39
2096 2100 1.818959 GCTGCATTGCCACCAAGGAA 61.819 55.000 6.12 0.00 41.22 3.36
2097 2101 0.680618 CTGCATTGCCACCAAGGAAA 59.319 50.000 6.12 0.00 40.03 3.13
2133 2137 3.058224 GCAACTATTGTGGTGAACTGGAC 60.058 47.826 0.00 0.00 0.00 4.02
2185 2189 8.908786 TGAACTCTCTTAATGAATGTCTTGTT 57.091 30.769 0.00 0.00 0.00 2.83
2195 2199 6.839124 ATGAATGTCTTGTTGGCTCAATTA 57.161 33.333 0.00 0.00 0.00 1.40
2315 2320 4.526970 ACGCACATTCCAGAATTTAGGAT 58.473 39.130 1.20 0.00 33.10 3.24
2326 2331 9.866655 TTCCAGAATTTAGGATATTACAATGCT 57.133 29.630 1.20 0.00 33.10 3.79
2361 2368 7.432059 AGGAAGCTTTCTTTTCAAGATCTTTG 58.568 34.615 4.86 1.96 37.38 2.77
2364 2371 6.214399 AGCTTTCTTTTCAAGATCTTTGCAG 58.786 36.000 4.86 0.01 37.38 4.41
2373 2380 3.806625 AGATCTTTGCAGAGCTCTCTC 57.193 47.619 14.96 9.44 42.42 3.20
2395 2402 2.956132 TGTCATTTTGTCACCCCACAT 58.044 42.857 0.00 0.00 0.00 3.21
2423 2430 9.537192 ACAATTTGTTTATATCATTGCCTCATG 57.463 29.630 0.00 0.00 0.00 3.07
2451 2458 4.499696 GCTTTTCTTTTTCCTGCAGCTACA 60.500 41.667 8.66 0.00 0.00 2.74
2588 2595 8.677300 ACATATCAACATCTACAACACCAAATC 58.323 33.333 0.00 0.00 0.00 2.17
2645 2652 8.982471 TCATATAATATACTCCCTTTGTCCCA 57.018 34.615 0.00 0.00 0.00 4.37
2646 2653 9.400208 TCATATAATATACTCCCTTTGTCCCAA 57.600 33.333 0.00 0.00 0.00 4.12
2650 2657 9.951866 ATAATATACTCCCTTTGTCCCAAAATT 57.048 29.630 0.00 0.00 0.00 1.82
2651 2658 7.660030 ATATACTCCCTTTGTCCCAAAATTG 57.340 36.000 0.00 0.00 0.00 2.32
2652 2659 3.653164 ACTCCCTTTGTCCCAAAATTGT 58.347 40.909 0.00 0.00 0.00 2.71
2653 2660 4.810345 ACTCCCTTTGTCCCAAAATTGTA 58.190 39.130 0.00 0.00 0.00 2.41
2654 2661 4.587262 ACTCCCTTTGTCCCAAAATTGTAC 59.413 41.667 0.00 0.00 0.00 2.90
2655 2662 4.810345 TCCCTTTGTCCCAAAATTGTACT 58.190 39.130 0.00 0.00 0.00 2.73
2656 2663 5.954757 TCCCTTTGTCCCAAAATTGTACTA 58.045 37.500 0.00 0.00 0.00 1.82
2657 2664 6.374588 TCCCTTTGTCCCAAAATTGTACTAA 58.625 36.000 0.00 0.00 0.00 2.24
2658 2665 6.492087 TCCCTTTGTCCCAAAATTGTACTAAG 59.508 38.462 0.00 10.34 31.48 2.18
2659 2666 6.295067 CCCTTTGTCCCAAAATTGTACTAAGG 60.295 42.308 19.94 19.94 40.50 2.69
2660 2667 6.266786 CCTTTGTCCCAAAATTGTACTAAGGT 59.733 38.462 19.30 0.00 38.61 3.50
2661 2668 7.201965 CCTTTGTCCCAAAATTGTACTAAGGTT 60.202 37.037 19.30 0.00 38.61 3.50
2662 2669 6.642707 TGTCCCAAAATTGTACTAAGGTTG 57.357 37.500 0.00 0.00 0.00 3.77
2663 2670 5.536916 TGTCCCAAAATTGTACTAAGGTTGG 59.463 40.000 0.00 2.68 34.99 3.77
2664 2671 5.400066 CCCAAAATTGTACTAAGGTTGGG 57.600 43.478 16.11 16.11 45.63 4.12
2666 2673 6.020971 CCAAAATTGTACTAAGGTTGGGAC 57.979 41.667 0.00 0.00 32.22 4.46
2667 2674 5.536916 CCAAAATTGTACTAAGGTTGGGACA 59.463 40.000 0.00 0.00 32.22 4.02
2668 2675 6.443792 CAAAATTGTACTAAGGTTGGGACAC 58.556 40.000 0.00 0.00 39.29 3.67
2669 2676 5.578157 AATTGTACTAAGGTTGGGACACT 57.422 39.130 0.00 0.00 39.29 3.55
2670 2677 5.578157 ATTGTACTAAGGTTGGGACACTT 57.422 39.130 0.00 0.00 39.29 3.16
2671 2678 6.691255 ATTGTACTAAGGTTGGGACACTTA 57.309 37.500 0.00 0.00 39.29 2.24
2672 2679 6.691255 TTGTACTAAGGTTGGGACACTTAT 57.309 37.500 0.00 0.00 39.29 1.73
2673 2680 6.691255 TGTACTAAGGTTGGGACACTTATT 57.309 37.500 0.00 0.00 39.29 1.40
2674 2681 7.081857 TGTACTAAGGTTGGGACACTTATTT 57.918 36.000 0.00 0.00 39.29 1.40
2675 2682 7.519927 TGTACTAAGGTTGGGACACTTATTTT 58.480 34.615 0.00 0.00 39.29 1.82
2676 2683 6.894339 ACTAAGGTTGGGACACTTATTTTG 57.106 37.500 0.00 0.00 39.29 2.44
2677 2684 5.773176 ACTAAGGTTGGGACACTTATTTTGG 59.227 40.000 0.00 0.00 39.29 3.28
2678 2685 3.506398 AGGTTGGGACACTTATTTTGGG 58.494 45.455 0.00 0.00 39.29 4.12
2679 2686 3.141272 AGGTTGGGACACTTATTTTGGGA 59.859 43.478 0.00 0.00 39.29 4.37
2680 2687 3.257375 GGTTGGGACACTTATTTTGGGAC 59.743 47.826 0.00 0.00 39.29 4.46
2681 2688 2.785562 TGGGACACTTATTTTGGGACG 58.214 47.619 0.00 0.00 0.00 4.79
2682 2689 2.089201 GGGACACTTATTTTGGGACGG 58.911 52.381 0.00 0.00 0.00 4.79
2683 2690 2.290450 GGGACACTTATTTTGGGACGGA 60.290 50.000 0.00 0.00 0.00 4.69
2684 2691 3.007635 GGACACTTATTTTGGGACGGAG 58.992 50.000 0.00 0.00 0.00 4.63
2685 2692 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
2686 2693 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
2687 2694 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
2688 2695 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
2689 2696 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
2690 2697 0.328258 ATTTTGGGACGGAGGGAGTG 59.672 55.000 0.00 0.00 0.00 3.51
2787 2797 8.519799 TCCTACAACTTCAGTTCTTTTGAAAT 57.480 30.769 0.00 0.00 40.53 2.17
2960 2971 4.202567 TGACCTTTTCTTCCCTGTTATGCT 60.203 41.667 0.00 0.00 0.00 3.79
3002 3013 6.819146 GTCTTCAAGCATAGTTATATAGGGCC 59.181 42.308 0.00 0.00 0.00 5.80
3028 3039 3.655276 ATGTTTGGAAGAGCAGCTTTG 57.345 42.857 0.00 0.00 36.83 2.77
3104 3115 1.876156 CCAGACAGAGCCAACTTCAAC 59.124 52.381 0.00 0.00 0.00 3.18
3113 3124 3.547746 AGCCAACTTCAACGGTCTTTTA 58.452 40.909 0.00 0.00 0.00 1.52
3138 3149 6.102615 ACTTTAGGAAATCATATGGTGGGCTA 59.897 38.462 2.13 0.00 0.00 3.93
3145 3156 5.690464 ATCATATGGTGGGCTAGAGAATC 57.310 43.478 2.13 0.00 0.00 2.52
3168 3179 9.520515 AATCACCAATTATACTTGCCTATAAGG 57.479 33.333 0.00 0.00 38.80 2.69
3169 3180 8.041143 TCACCAATTATACTTGCCTATAAGGT 57.959 34.615 0.00 0.00 37.80 3.50
3170 3181 7.936847 TCACCAATTATACTTGCCTATAAGGTG 59.063 37.037 0.00 0.00 36.87 4.00
3171 3182 7.936847 CACCAATTATACTTGCCTATAAGGTGA 59.063 37.037 0.00 0.00 37.24 4.02
3172 3183 7.937394 ACCAATTATACTTGCCTATAAGGTGAC 59.063 37.037 0.00 0.00 37.80 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 9.725019 ACGGCATGAGATTATTTATGAGAATAA 57.275 29.630 0.00 0.00 36.30 1.40
32 33 9.155975 GTACGGCATGAGATTATTTATGAGAAT 57.844 33.333 0.00 0.00 0.00 2.40
33 34 7.602644 GGTACGGCATGAGATTATTTATGAGAA 59.397 37.037 0.00 0.00 0.00 2.87
34 35 7.097192 GGTACGGCATGAGATTATTTATGAGA 58.903 38.462 0.00 0.00 0.00 3.27
35 36 6.873605 TGGTACGGCATGAGATTATTTATGAG 59.126 38.462 0.00 0.00 0.00 2.90
36 37 6.764379 TGGTACGGCATGAGATTATTTATGA 58.236 36.000 0.00 0.00 0.00 2.15
37 38 7.433708 TTGGTACGGCATGAGATTATTTATG 57.566 36.000 0.00 0.00 0.00 1.90
38 39 8.514594 CATTTGGTACGGCATGAGATTATTTAT 58.485 33.333 0.00 0.00 0.00 1.40
39 40 7.500892 ACATTTGGTACGGCATGAGATTATTTA 59.499 33.333 0.00 0.00 0.00 1.40
40 41 6.321181 ACATTTGGTACGGCATGAGATTATTT 59.679 34.615 0.00 0.00 0.00 1.40
41 42 5.827797 ACATTTGGTACGGCATGAGATTATT 59.172 36.000 0.00 0.00 0.00 1.40
42 43 5.239306 CACATTTGGTACGGCATGAGATTAT 59.761 40.000 0.00 0.00 0.00 1.28
43 44 4.574421 CACATTTGGTACGGCATGAGATTA 59.426 41.667 0.00 0.00 0.00 1.75
44 45 3.378112 CACATTTGGTACGGCATGAGATT 59.622 43.478 0.00 0.00 0.00 2.40
45 46 2.945008 CACATTTGGTACGGCATGAGAT 59.055 45.455 0.00 0.00 0.00 2.75
46 47 2.355197 CACATTTGGTACGGCATGAGA 58.645 47.619 0.00 0.00 0.00 3.27
47 48 1.401552 CCACATTTGGTACGGCATGAG 59.598 52.381 0.00 0.00 38.23 2.90
48 49 1.458398 CCACATTTGGTACGGCATGA 58.542 50.000 0.00 0.00 38.23 3.07
49 50 0.455410 CCCACATTTGGTACGGCATG 59.545 55.000 0.00 0.00 42.10 4.06
50 51 0.329931 TCCCACATTTGGTACGGCAT 59.670 50.000 0.00 0.00 42.10 4.40
51 52 0.606944 GTCCCACATTTGGTACGGCA 60.607 55.000 0.00 0.00 42.10 5.69
52 53 0.322187 AGTCCCACATTTGGTACGGC 60.322 55.000 0.00 0.00 42.10 5.68
53 54 1.448985 CAGTCCCACATTTGGTACGG 58.551 55.000 0.00 0.00 42.10 4.02
54 55 1.448985 CCAGTCCCACATTTGGTACG 58.551 55.000 0.00 0.00 42.10 3.67
55 56 1.353022 TCCCAGTCCCACATTTGGTAC 59.647 52.381 0.00 0.00 42.10 3.34
56 57 1.353022 GTCCCAGTCCCACATTTGGTA 59.647 52.381 0.00 0.00 42.10 3.25
57 58 0.112412 GTCCCAGTCCCACATTTGGT 59.888 55.000 0.00 0.00 42.10 3.67
58 59 0.405585 AGTCCCAGTCCCACATTTGG 59.594 55.000 0.00 0.00 43.50 3.28
59 60 3.081804 GTTAGTCCCAGTCCCACATTTG 58.918 50.000 0.00 0.00 0.00 2.32
60 61 2.714250 TGTTAGTCCCAGTCCCACATTT 59.286 45.455 0.00 0.00 0.00 2.32
61 62 2.344592 TGTTAGTCCCAGTCCCACATT 58.655 47.619 0.00 0.00 0.00 2.71
62 63 2.038863 TGTTAGTCCCAGTCCCACAT 57.961 50.000 0.00 0.00 0.00 3.21
63 64 1.628340 CATGTTAGTCCCAGTCCCACA 59.372 52.381 0.00 0.00 0.00 4.17
64 65 1.628846 ACATGTTAGTCCCAGTCCCAC 59.371 52.381 0.00 0.00 0.00 4.61
65 66 1.906574 GACATGTTAGTCCCAGTCCCA 59.093 52.381 0.00 0.00 32.36 4.37
66 67 1.906574 TGACATGTTAGTCCCAGTCCC 59.093 52.381 0.00 0.00 37.73 4.46
67 68 2.567615 AGTGACATGTTAGTCCCAGTCC 59.432 50.000 0.00 0.00 37.73 3.85
68 69 3.963428 AGTGACATGTTAGTCCCAGTC 57.037 47.619 0.00 0.00 37.73 3.51
69 70 3.904339 AGAAGTGACATGTTAGTCCCAGT 59.096 43.478 0.00 0.00 37.73 4.00
70 71 4.021104 TGAGAAGTGACATGTTAGTCCCAG 60.021 45.833 0.00 0.00 37.73 4.45
71 72 3.901222 TGAGAAGTGACATGTTAGTCCCA 59.099 43.478 0.00 0.00 37.73 4.37
72 73 4.537135 TGAGAAGTGACATGTTAGTCCC 57.463 45.455 0.00 0.00 37.73 4.46
73 74 5.542779 ACTTGAGAAGTGACATGTTAGTCC 58.457 41.667 0.00 0.00 41.01 3.85
74 75 9.856488 TTATACTTGAGAAGTGACATGTTAGTC 57.144 33.333 0.00 0.00 42.84 2.59
77 78 9.817809 GGATTATACTTGAGAAGTGACATGTTA 57.182 33.333 0.00 0.00 42.84 2.41
78 79 7.770897 GGGATTATACTTGAGAAGTGACATGTT 59.229 37.037 0.00 0.00 42.84 2.71
79 80 7.126421 AGGGATTATACTTGAGAAGTGACATGT 59.874 37.037 0.00 0.00 42.84 3.21
80 81 7.504403 AGGGATTATACTTGAGAAGTGACATG 58.496 38.462 0.00 0.00 42.84 3.21
81 82 7.345653 TGAGGGATTATACTTGAGAAGTGACAT 59.654 37.037 0.00 0.00 42.84 3.06
82 83 6.667848 TGAGGGATTATACTTGAGAAGTGACA 59.332 38.462 0.00 0.00 42.84 3.58
83 84 7.113658 TGAGGGATTATACTTGAGAAGTGAC 57.886 40.000 0.00 0.00 42.84 3.67
84 85 7.733773 TTGAGGGATTATACTTGAGAAGTGA 57.266 36.000 0.00 0.00 42.84 3.41
85 86 7.824289 TGTTTGAGGGATTATACTTGAGAAGTG 59.176 37.037 0.00 0.00 42.84 3.16
86 87 7.918076 TGTTTGAGGGATTATACTTGAGAAGT 58.082 34.615 0.00 0.00 45.40 3.01
87 88 8.669243 GTTGTTTGAGGGATTATACTTGAGAAG 58.331 37.037 0.00 0.00 0.00 2.85
88 89 8.383175 AGTTGTTTGAGGGATTATACTTGAGAA 58.617 33.333 0.00 0.00 0.00 2.87
89 90 7.918076 AGTTGTTTGAGGGATTATACTTGAGA 58.082 34.615 0.00 0.00 0.00 3.27
90 91 7.281100 GGAGTTGTTTGAGGGATTATACTTGAG 59.719 40.741 0.00 0.00 0.00 3.02
91 92 7.110155 GGAGTTGTTTGAGGGATTATACTTGA 58.890 38.462 0.00 0.00 0.00 3.02
92 93 6.884295 TGGAGTTGTTTGAGGGATTATACTTG 59.116 38.462 0.00 0.00 0.00 3.16
93 94 7.027874 TGGAGTTGTTTGAGGGATTATACTT 57.972 36.000 0.00 0.00 0.00 2.24
94 95 6.636454 TGGAGTTGTTTGAGGGATTATACT 57.364 37.500 0.00 0.00 0.00 2.12
95 96 7.283329 AGATGGAGTTGTTTGAGGGATTATAC 58.717 38.462 0.00 0.00 0.00 1.47
96 97 7.127186 TGAGATGGAGTTGTTTGAGGGATTATA 59.873 37.037 0.00 0.00 0.00 0.98
97 98 6.069440 TGAGATGGAGTTGTTTGAGGGATTAT 60.069 38.462 0.00 0.00 0.00 1.28
98 99 5.250543 TGAGATGGAGTTGTTTGAGGGATTA 59.749 40.000 0.00 0.00 0.00 1.75
99 100 4.043310 TGAGATGGAGTTGTTTGAGGGATT 59.957 41.667 0.00 0.00 0.00 3.01
100 101 3.588842 TGAGATGGAGTTGTTTGAGGGAT 59.411 43.478 0.00 0.00 0.00 3.85
101 102 2.978978 TGAGATGGAGTTGTTTGAGGGA 59.021 45.455 0.00 0.00 0.00 4.20
102 103 3.423539 TGAGATGGAGTTGTTTGAGGG 57.576 47.619 0.00 0.00 0.00 4.30
103 104 7.636150 ATTTATGAGATGGAGTTGTTTGAGG 57.364 36.000 0.00 0.00 0.00 3.86
104 105 8.186821 GGAATTTATGAGATGGAGTTGTTTGAG 58.813 37.037 0.00 0.00 0.00 3.02
105 106 7.122650 GGGAATTTATGAGATGGAGTTGTTTGA 59.877 37.037 0.00 0.00 0.00 2.69
106 107 7.093814 TGGGAATTTATGAGATGGAGTTGTTTG 60.094 37.037 0.00 0.00 0.00 2.93
107 108 6.953520 TGGGAATTTATGAGATGGAGTTGTTT 59.046 34.615 0.00 0.00 0.00 2.83
108 109 6.378280 GTGGGAATTTATGAGATGGAGTTGTT 59.622 38.462 0.00 0.00 0.00 2.83
109 110 5.888161 GTGGGAATTTATGAGATGGAGTTGT 59.112 40.000 0.00 0.00 0.00 3.32
110 111 6.125029 AGTGGGAATTTATGAGATGGAGTTG 58.875 40.000 0.00 0.00 0.00 3.16
111 112 6.332976 AGTGGGAATTTATGAGATGGAGTT 57.667 37.500 0.00 0.00 0.00 3.01
112 113 5.163152 GGAGTGGGAATTTATGAGATGGAGT 60.163 44.000 0.00 0.00 0.00 3.85
113 114 5.312079 GGAGTGGGAATTTATGAGATGGAG 58.688 45.833 0.00 0.00 0.00 3.86
114 115 4.104738 GGGAGTGGGAATTTATGAGATGGA 59.895 45.833 0.00 0.00 0.00 3.41
115 116 4.105377 AGGGAGTGGGAATTTATGAGATGG 59.895 45.833 0.00 0.00 0.00 3.51
116 117 5.316158 AGGGAGTGGGAATTTATGAGATG 57.684 43.478 0.00 0.00 0.00 2.90
117 118 6.347061 AAAGGGAGTGGGAATTTATGAGAT 57.653 37.500 0.00 0.00 0.00 2.75
118 119 5.340027 GGAAAGGGAGTGGGAATTTATGAGA 60.340 44.000 0.00 0.00 0.00 3.27
119 120 4.889995 GGAAAGGGAGTGGGAATTTATGAG 59.110 45.833 0.00 0.00 0.00 2.90
120 121 4.325816 GGGAAAGGGAGTGGGAATTTATGA 60.326 45.833 0.00 0.00 0.00 2.15
121 122 3.960755 GGGAAAGGGAGTGGGAATTTATG 59.039 47.826 0.00 0.00 0.00 1.90
122 123 3.864770 AGGGAAAGGGAGTGGGAATTTAT 59.135 43.478 0.00 0.00 0.00 1.40
123 124 3.274383 AGGGAAAGGGAGTGGGAATTTA 58.726 45.455 0.00 0.00 0.00 1.40
124 125 2.081855 AGGGAAAGGGAGTGGGAATTT 58.918 47.619 0.00 0.00 0.00 1.82
125 126 1.773541 AGGGAAAGGGAGTGGGAATT 58.226 50.000 0.00 0.00 0.00 2.17
126 127 1.773541 AAGGGAAAGGGAGTGGGAAT 58.226 50.000 0.00 0.00 0.00 3.01
127 128 2.444033 TAAGGGAAAGGGAGTGGGAA 57.556 50.000 0.00 0.00 0.00 3.97
128 129 2.377531 GTTTAAGGGAAAGGGAGTGGGA 59.622 50.000 0.00 0.00 0.00 4.37
129 130 2.378886 AGTTTAAGGGAAAGGGAGTGGG 59.621 50.000 0.00 0.00 0.00 4.61
130 131 3.808834 AGTTTAAGGGAAAGGGAGTGG 57.191 47.619 0.00 0.00 0.00 4.00
131 132 4.042435 TGGTAGTTTAAGGGAAAGGGAGTG 59.958 45.833 0.00 0.00 0.00 3.51
132 133 4.245308 TGGTAGTTTAAGGGAAAGGGAGT 58.755 43.478 0.00 0.00 0.00 3.85
133 134 4.921644 TGGTAGTTTAAGGGAAAGGGAG 57.078 45.455 0.00 0.00 0.00 4.30
134 135 4.416179 TGTTGGTAGTTTAAGGGAAAGGGA 59.584 41.667 0.00 0.00 0.00 4.20
135 136 4.732065 TGTTGGTAGTTTAAGGGAAAGGG 58.268 43.478 0.00 0.00 0.00 3.95
136 137 5.773176 ACATGTTGGTAGTTTAAGGGAAAGG 59.227 40.000 0.00 0.00 0.00 3.11
137 138 6.894339 ACATGTTGGTAGTTTAAGGGAAAG 57.106 37.500 0.00 0.00 0.00 2.62
138 139 6.461788 GCAACATGTTGGTAGTTTAAGGGAAA 60.462 38.462 33.56 0.00 40.74 3.13
139 140 5.010213 GCAACATGTTGGTAGTTTAAGGGAA 59.990 40.000 33.56 0.00 40.74 3.97
140 141 4.521256 GCAACATGTTGGTAGTTTAAGGGA 59.479 41.667 33.56 0.00 40.74 4.20
141 142 4.279671 TGCAACATGTTGGTAGTTTAAGGG 59.720 41.667 33.56 9.57 40.74 3.95
142 143 5.446143 TGCAACATGTTGGTAGTTTAAGG 57.554 39.130 33.56 9.76 40.74 2.69
143 144 6.420604 CCTTTGCAACATGTTGGTAGTTTAAG 59.579 38.462 33.56 16.17 40.74 1.85
144 145 6.127310 ACCTTTGCAACATGTTGGTAGTTTAA 60.127 34.615 33.56 9.59 40.74 1.52
145 146 5.361285 ACCTTTGCAACATGTTGGTAGTTTA 59.639 36.000 33.56 3.21 40.74 2.01
146 147 4.161377 ACCTTTGCAACATGTTGGTAGTTT 59.839 37.500 33.56 3.85 40.74 2.66
147 148 3.704061 ACCTTTGCAACATGTTGGTAGTT 59.296 39.130 33.56 4.18 40.74 2.24
148 149 3.295973 ACCTTTGCAACATGTTGGTAGT 58.704 40.909 33.56 12.74 40.74 2.73
149 150 5.182950 TCATACCTTTGCAACATGTTGGTAG 59.817 40.000 33.56 20.38 40.74 3.18
150 151 5.073428 TCATACCTTTGCAACATGTTGGTA 58.927 37.500 33.56 26.73 40.74 3.25
151 152 3.894427 TCATACCTTTGCAACATGTTGGT 59.106 39.130 33.56 25.67 40.74 3.67
152 153 4.517952 TCATACCTTTGCAACATGTTGG 57.482 40.909 33.56 21.90 40.74 3.77
153 154 7.862372 GGTATATCATACCTTTGCAACATGTTG 59.138 37.037 30.20 30.20 37.80 3.33
154 155 7.255104 CGGTATATCATACCTTTGCAACATGTT 60.255 37.037 4.92 4.92 35.49 2.71
155 156 6.204688 CGGTATATCATACCTTTGCAACATGT 59.795 38.462 0.00 0.00 35.49 3.21
156 157 6.204688 ACGGTATATCATACCTTTGCAACATG 59.795 38.462 0.00 0.85 35.49 3.21
157 158 6.204688 CACGGTATATCATACCTTTGCAACAT 59.795 38.462 0.00 0.00 35.49 2.71
158 159 5.525745 CACGGTATATCATACCTTTGCAACA 59.474 40.000 0.00 0.00 35.49 3.33
159 160 5.560183 GCACGGTATATCATACCTTTGCAAC 60.560 44.000 21.96 5.06 40.78 4.17
160 161 4.513692 GCACGGTATATCATACCTTTGCAA 59.486 41.667 21.96 0.00 40.78 4.08
161 162 4.062293 GCACGGTATATCATACCTTTGCA 58.938 43.478 21.96 0.00 40.78 4.08
162 163 4.315803 AGCACGGTATATCATACCTTTGC 58.684 43.478 20.58 20.58 41.10 3.68
163 164 6.346598 CGAAAGCACGGTATATCATACCTTTG 60.347 42.308 12.34 10.19 35.49 2.77
164 165 5.694910 CGAAAGCACGGTATATCATACCTTT 59.305 40.000 12.34 6.83 35.49 3.11
165 166 5.227908 CGAAAGCACGGTATATCATACCTT 58.772 41.667 12.34 1.81 35.49 3.50
166 167 4.806330 CGAAAGCACGGTATATCATACCT 58.194 43.478 12.34 0.00 35.49 3.08
183 184 4.681025 ACAAAGCAAACACATATGCGAAAG 59.319 37.500 1.58 0.00 46.98 2.62
184 185 4.443725 CACAAAGCAAACACATATGCGAAA 59.556 37.500 1.58 0.00 46.98 3.46
185 186 3.980134 CACAAAGCAAACACATATGCGAA 59.020 39.130 1.58 0.00 46.98 4.70
186 187 3.004210 ACACAAAGCAAACACATATGCGA 59.996 39.130 1.58 0.00 46.98 5.10
187 188 3.307674 ACACAAAGCAAACACATATGCG 58.692 40.909 1.58 0.00 46.98 4.73
188 189 5.218885 TGTACACAAAGCAAACACATATGC 58.781 37.500 1.58 0.00 42.87 3.14
189 190 7.060979 GTCATGTACACAAAGCAAACACATATG 59.939 37.037 0.00 0.00 0.00 1.78
190 191 7.040478 AGTCATGTACACAAAGCAAACACATAT 60.040 33.333 0.00 0.00 0.00 1.78
191 192 6.262049 AGTCATGTACACAAAGCAAACACATA 59.738 34.615 0.00 0.00 0.00 2.29
192 193 5.067674 AGTCATGTACACAAAGCAAACACAT 59.932 36.000 0.00 0.00 0.00 3.21
193 194 4.397730 AGTCATGTACACAAAGCAAACACA 59.602 37.500 0.00 0.00 0.00 3.72
194 195 4.920376 AGTCATGTACACAAAGCAAACAC 58.080 39.130 0.00 0.00 0.00 3.32
195 196 5.586643 TGTAGTCATGTACACAAAGCAAACA 59.413 36.000 0.00 0.00 0.00 2.83
196 197 6.055231 TGTAGTCATGTACACAAAGCAAAC 57.945 37.500 0.00 0.00 0.00 2.93
197 198 6.667370 CATGTAGTCATGTACACAAAGCAAA 58.333 36.000 0.00 0.00 44.37 3.68
198 199 6.239908 CATGTAGTCATGTACACAAAGCAA 57.760 37.500 0.00 0.00 44.37 3.91
199 200 5.861222 CATGTAGTCATGTACACAAAGCA 57.139 39.130 0.00 0.00 44.37 3.91
217 218 7.989741 CCCTTGTTGATCTTCTATAGAACATGT 59.010 37.037 11.24 0.00 35.82 3.21
218 219 8.206867 TCCCTTGTTGATCTTCTATAGAACATG 58.793 37.037 11.24 9.31 35.82 3.21
219 220 8.324191 TCCCTTGTTGATCTTCTATAGAACAT 57.676 34.615 11.24 7.01 35.82 2.71
220 221 7.733773 TCCCTTGTTGATCTTCTATAGAACA 57.266 36.000 11.24 5.70 36.22 3.18
221 222 9.050601 CATTCCCTTGTTGATCTTCTATAGAAC 57.949 37.037 11.24 3.10 36.22 3.01
222 223 8.992349 TCATTCCCTTGTTGATCTTCTATAGAA 58.008 33.333 14.42 14.42 36.22 2.10
223 224 8.553085 TCATTCCCTTGTTGATCTTCTATAGA 57.447 34.615 0.00 0.00 37.28 1.98
224 225 7.387397 GCTCATTCCCTTGTTGATCTTCTATAG 59.613 40.741 0.00 0.00 0.00 1.31
225 226 7.147497 TGCTCATTCCCTTGTTGATCTTCTATA 60.147 37.037 0.00 0.00 0.00 1.31
226 227 6.060788 GCTCATTCCCTTGTTGATCTTCTAT 58.939 40.000 0.00 0.00 0.00 1.98
227 228 5.045651 TGCTCATTCCCTTGTTGATCTTCTA 60.046 40.000 0.00 0.00 0.00 2.10
228 229 4.263639 TGCTCATTCCCTTGTTGATCTTCT 60.264 41.667 0.00 0.00 0.00 2.85
229 230 4.012374 TGCTCATTCCCTTGTTGATCTTC 58.988 43.478 0.00 0.00 0.00 2.87
230 231 4.038271 TGCTCATTCCCTTGTTGATCTT 57.962 40.909 0.00 0.00 0.00 2.40
231 232 3.726557 TGCTCATTCCCTTGTTGATCT 57.273 42.857 0.00 0.00 0.00 2.75
232 233 4.024556 CGTATGCTCATTCCCTTGTTGATC 60.025 45.833 0.00 0.00 0.00 2.92
233 234 3.879295 CGTATGCTCATTCCCTTGTTGAT 59.121 43.478 0.00 0.00 0.00 2.57
234 235 3.055458 TCGTATGCTCATTCCCTTGTTGA 60.055 43.478 0.00 0.00 0.00 3.18
235 236 3.270027 TCGTATGCTCATTCCCTTGTTG 58.730 45.455 0.00 0.00 0.00 3.33
236 237 3.627395 TCGTATGCTCATTCCCTTGTT 57.373 42.857 0.00 0.00 0.00 2.83
237 238 3.627395 TTCGTATGCTCATTCCCTTGT 57.373 42.857 0.00 0.00 0.00 3.16
238 239 6.808008 ATTATTCGTATGCTCATTCCCTTG 57.192 37.500 0.00 0.00 0.00 3.61
239 240 6.998074 TGAATTATTCGTATGCTCATTCCCTT 59.002 34.615 0.23 0.00 0.00 3.95
240 241 6.533730 TGAATTATTCGTATGCTCATTCCCT 58.466 36.000 0.23 0.00 0.00 4.20
241 242 6.801539 TGAATTATTCGTATGCTCATTCCC 57.198 37.500 0.23 0.00 0.00 3.97
242 243 8.261492 AGATGAATTATTCGTATGCTCATTCC 57.739 34.615 0.00 0.00 0.00 3.01
295 296 9.997482 GAAAAGTCGCCACTATCAATTTATAAA 57.003 29.630 0.00 0.00 30.14 1.40
296 297 9.391006 AGAAAAGTCGCCACTATCAATTTATAA 57.609 29.630 0.00 0.00 30.14 0.98
297 298 8.958119 AGAAAAGTCGCCACTATCAATTTATA 57.042 30.769 0.00 0.00 30.14 0.98
298 299 7.865706 AGAAAAGTCGCCACTATCAATTTAT 57.134 32.000 0.00 0.00 30.14 1.40
299 300 8.780846 TTAGAAAAGTCGCCACTATCAATTTA 57.219 30.769 0.00 0.00 30.14 1.40
300 301 7.681939 TTAGAAAAGTCGCCACTATCAATTT 57.318 32.000 0.00 0.00 30.14 1.82
301 302 7.390718 ACTTTAGAAAAGTCGCCACTATCAATT 59.609 33.333 0.00 0.00 30.14 2.32
302 303 6.879458 ACTTTAGAAAAGTCGCCACTATCAAT 59.121 34.615 0.00 0.00 30.14 2.57
303 304 6.228258 ACTTTAGAAAAGTCGCCACTATCAA 58.772 36.000 0.00 0.00 30.14 2.57
304 305 5.790593 ACTTTAGAAAAGTCGCCACTATCA 58.209 37.500 0.00 0.00 30.14 2.15
305 306 7.256286 TCTACTTTAGAAAAGTCGCCACTATC 58.744 38.462 8.24 0.00 30.14 2.08
306 307 7.166691 TCTACTTTAGAAAAGTCGCCACTAT 57.833 36.000 8.24 0.00 30.14 2.12
307 308 6.579666 TCTACTTTAGAAAAGTCGCCACTA 57.420 37.500 8.24 0.00 30.14 2.74
308 309 5.464030 TCTACTTTAGAAAAGTCGCCACT 57.536 39.130 8.24 0.00 0.00 4.00
334 335 9.427821 ACTCAGAGTATTATTCACTACCATCTT 57.572 33.333 0.00 0.00 0.00 2.40
335 336 8.855110 CACTCAGAGTATTATTCACTACCATCT 58.145 37.037 1.67 0.00 0.00 2.90
336 337 8.085296 CCACTCAGAGTATTATTCACTACCATC 58.915 40.741 1.67 0.00 0.00 3.51
337 338 7.565398 ACCACTCAGAGTATTATTCACTACCAT 59.435 37.037 1.67 0.00 0.00 3.55
338 339 6.895756 ACCACTCAGAGTATTATTCACTACCA 59.104 38.462 1.67 0.00 0.00 3.25
339 340 7.349412 ACCACTCAGAGTATTATTCACTACC 57.651 40.000 1.67 0.00 0.00 3.18
348 349 9.862149 TGTCAATAGATACCACTCAGAGTATTA 57.138 33.333 1.67 0.00 29.37 0.98
349 350 8.768501 TGTCAATAGATACCACTCAGAGTATT 57.231 34.615 1.67 0.00 29.37 1.89
350 351 8.948401 ATGTCAATAGATACCACTCAGAGTAT 57.052 34.615 1.67 0.00 31.88 2.12
351 352 7.448777 GGATGTCAATAGATACCACTCAGAGTA 59.551 40.741 1.67 0.00 0.00 2.59
352 353 6.266558 GGATGTCAATAGATACCACTCAGAGT 59.733 42.308 0.00 0.00 0.00 3.24
353 354 6.493115 AGGATGTCAATAGATACCACTCAGAG 59.507 42.308 0.00 0.00 0.00 3.35
354 355 6.377080 AGGATGTCAATAGATACCACTCAGA 58.623 40.000 0.00 0.00 0.00 3.27
355 356 6.662865 AGGATGTCAATAGATACCACTCAG 57.337 41.667 0.00 0.00 0.00 3.35
356 357 7.310052 GCATAGGATGTCAATAGATACCACTCA 60.310 40.741 0.00 0.00 0.00 3.41
357 358 7.038659 GCATAGGATGTCAATAGATACCACTC 58.961 42.308 0.00 0.00 0.00 3.51
358 359 6.728164 AGCATAGGATGTCAATAGATACCACT 59.272 38.462 0.00 0.00 0.00 4.00
359 360 6.940739 AGCATAGGATGTCAATAGATACCAC 58.059 40.000 0.00 0.00 0.00 4.16
360 361 8.664669 TTAGCATAGGATGTCAATAGATACCA 57.335 34.615 0.00 0.00 0.00 3.25
365 366 9.851686 ACAAAATTAGCATAGGATGTCAATAGA 57.148 29.630 0.00 0.00 0.00 1.98
370 371 9.407380 ACATAACAAAATTAGCATAGGATGTCA 57.593 29.630 0.00 0.00 0.00 3.58
373 374 9.385902 CGAACATAACAAAATTAGCATAGGATG 57.614 33.333 0.00 0.00 0.00 3.51
374 375 9.120538 ACGAACATAACAAAATTAGCATAGGAT 57.879 29.630 0.00 0.00 0.00 3.24
375 376 8.500753 ACGAACATAACAAAATTAGCATAGGA 57.499 30.769 0.00 0.00 0.00 2.94
379 380 9.935682 CTCATACGAACATAACAAAATTAGCAT 57.064 29.630 0.00 0.00 0.00 3.79
380 381 7.908082 GCTCATACGAACATAACAAAATTAGCA 59.092 33.333 0.00 0.00 0.00 3.49
381 382 7.908082 TGCTCATACGAACATAACAAAATTAGC 59.092 33.333 0.00 0.00 0.00 3.09
382 383 9.767684 TTGCTCATACGAACATAACAAAATTAG 57.232 29.630 0.00 0.00 0.00 1.73
384 385 9.638239 ATTTGCTCATACGAACATAACAAAATT 57.362 25.926 0.00 0.00 0.00 1.82
385 386 9.638239 AATTTGCTCATACGAACATAACAAAAT 57.362 25.926 0.00 0.00 0.00 1.82
389 390 9.715123 CAATAATTTGCTCATACGAACATAACA 57.285 29.630 0.00 0.00 0.00 2.41
390 391 9.716507 ACAATAATTTGCTCATACGAACATAAC 57.283 29.630 0.00 0.00 36.22 1.89
393 394 9.935682 CTAACAATAATTTGCTCATACGAACAT 57.064 29.630 0.00 0.00 36.22 2.71
394 395 8.941977 ACTAACAATAATTTGCTCATACGAACA 58.058 29.630 0.00 0.00 36.22 3.18
395 396 9.769093 AACTAACAATAATTTGCTCATACGAAC 57.231 29.630 0.00 0.00 36.22 3.95
471 472 9.754382 GTGTGGCAAAATAGATATCATCATTTT 57.246 29.630 5.32 10.31 33.96 1.82
472 473 9.139734 AGTGTGGCAAAATAGATATCATCATTT 57.860 29.630 5.32 5.03 0.00 2.32
473 474 8.701908 AGTGTGGCAAAATAGATATCATCATT 57.298 30.769 5.32 0.00 0.00 2.57
474 475 9.797642 TTAGTGTGGCAAAATAGATATCATCAT 57.202 29.630 5.32 0.00 0.00 2.45
475 476 9.625747 TTTAGTGTGGCAAAATAGATATCATCA 57.374 29.630 5.32 0.00 0.00 3.07
504 505 8.943002 CGTAAATAGTGGTAGGAGAAAATTGTT 58.057 33.333 0.00 0.00 0.00 2.83
505 506 8.316214 TCGTAAATAGTGGTAGGAGAAAATTGT 58.684 33.333 0.00 0.00 0.00 2.71
506 507 8.712285 TCGTAAATAGTGGTAGGAGAAAATTG 57.288 34.615 0.00 0.00 0.00 2.32
507 508 8.537858 ACTCGTAAATAGTGGTAGGAGAAAATT 58.462 33.333 7.24 0.00 36.30 1.82
508 509 7.980099 CACTCGTAAATAGTGGTAGGAGAAAAT 59.020 37.037 7.24 0.00 40.56 1.82
509 510 7.318141 CACTCGTAAATAGTGGTAGGAGAAAA 58.682 38.462 7.24 0.00 40.56 2.29
510 511 6.860080 CACTCGTAAATAGTGGTAGGAGAAA 58.140 40.000 7.24 0.00 40.56 2.52
511 512 6.446781 CACTCGTAAATAGTGGTAGGAGAA 57.553 41.667 7.24 0.00 40.56 2.87
520 521 5.006153 TGGATGACCACTCGTAAATAGTG 57.994 43.478 0.00 0.00 41.77 2.74
534 535 6.876257 AGCTTTCTAAATATCGATGGATGACC 59.124 38.462 8.54 0.00 34.00 4.02
535 536 7.897575 AGCTTTCTAAATATCGATGGATGAC 57.102 36.000 8.54 0.00 34.00 3.06
536 537 7.755373 CGTAGCTTTCTAAATATCGATGGATGA 59.245 37.037 8.54 0.00 34.00 2.92
537 538 7.755373 TCGTAGCTTTCTAAATATCGATGGATG 59.245 37.037 8.54 0.00 34.00 3.51
538 539 7.755822 GTCGTAGCTTTCTAAATATCGATGGAT 59.244 37.037 8.54 0.00 36.65 3.41
539 540 7.082602 GTCGTAGCTTTCTAAATATCGATGGA 58.917 38.462 8.54 0.00 0.00 3.41
540 541 6.861572 TGTCGTAGCTTTCTAAATATCGATGG 59.138 38.462 8.54 0.00 0.00 3.51
541 542 7.378728 TGTGTCGTAGCTTTCTAAATATCGATG 59.621 37.037 8.54 0.00 0.00 3.84
542 543 7.378995 GTGTGTCGTAGCTTTCTAAATATCGAT 59.621 37.037 2.16 2.16 0.00 3.59
543 544 6.690098 GTGTGTCGTAGCTTTCTAAATATCGA 59.310 38.462 0.00 0.00 0.00 3.59
544 545 6.344002 CGTGTGTCGTAGCTTTCTAAATATCG 60.344 42.308 0.00 0.00 34.52 2.92
545 546 6.853938 CGTGTGTCGTAGCTTTCTAAATATC 58.146 40.000 0.00 0.00 34.52 1.63
546 547 6.807708 CGTGTGTCGTAGCTTTCTAAATAT 57.192 37.500 0.00 0.00 34.52 1.28
562 563 8.265998 CCTTAAAATTCAAAAATGACGTGTGTC 58.734 33.333 0.00 0.00 45.71 3.67
563 564 7.254286 GCCTTAAAATTCAAAAATGACGTGTGT 60.254 33.333 0.00 0.00 0.00 3.72
564 565 7.062848 GCCTTAAAATTCAAAAATGACGTGTG 58.937 34.615 0.00 0.00 0.00 3.82
565 566 6.201997 GGCCTTAAAATTCAAAAATGACGTGT 59.798 34.615 0.00 0.00 0.00 4.49
566 567 6.347321 GGGCCTTAAAATTCAAAAATGACGTG 60.347 38.462 0.84 0.00 0.00 4.49
567 568 5.699001 GGGCCTTAAAATTCAAAAATGACGT 59.301 36.000 0.84 0.00 0.00 4.34
568 569 5.121611 GGGGCCTTAAAATTCAAAAATGACG 59.878 40.000 0.84 0.00 0.00 4.35
569 570 6.000840 TGGGGCCTTAAAATTCAAAAATGAC 58.999 36.000 0.84 0.00 0.00 3.06
570 571 6.192970 TGGGGCCTTAAAATTCAAAAATGA 57.807 33.333 0.84 0.00 0.00 2.57
571 572 6.885918 AGATGGGGCCTTAAAATTCAAAAATG 59.114 34.615 0.84 0.00 0.00 2.32
572 573 7.031415 AGATGGGGCCTTAAAATTCAAAAAT 57.969 32.000 0.84 0.00 0.00 1.82
573 574 6.446909 AGATGGGGCCTTAAAATTCAAAAA 57.553 33.333 0.84 0.00 0.00 1.94
574 575 6.446909 AAGATGGGGCCTTAAAATTCAAAA 57.553 33.333 0.84 0.00 0.00 2.44
575 576 6.957020 TCTAAGATGGGGCCTTAAAATTCAAA 59.043 34.615 0.84 0.00 0.00 2.69
576 577 6.498538 TCTAAGATGGGGCCTTAAAATTCAA 58.501 36.000 0.84 0.00 0.00 2.69
577 578 6.086011 TCTAAGATGGGGCCTTAAAATTCA 57.914 37.500 0.84 0.00 0.00 2.57
578 579 7.603180 ATTCTAAGATGGGGCCTTAAAATTC 57.397 36.000 0.84 0.00 0.00 2.17
579 580 7.201911 CGAATTCTAAGATGGGGCCTTAAAATT 60.202 37.037 0.84 0.00 32.52 1.82
580 581 6.265422 CGAATTCTAAGATGGGGCCTTAAAAT 59.735 38.462 0.84 0.00 0.00 1.82
581 582 5.592688 CGAATTCTAAGATGGGGCCTTAAAA 59.407 40.000 0.84 0.00 0.00 1.52
582 583 5.130350 CGAATTCTAAGATGGGGCCTTAAA 58.870 41.667 0.84 0.00 0.00 1.52
583 584 4.714632 CGAATTCTAAGATGGGGCCTTAA 58.285 43.478 0.84 0.00 0.00 1.85
584 585 3.496160 GCGAATTCTAAGATGGGGCCTTA 60.496 47.826 0.84 0.00 0.00 2.69
585 586 2.749800 GCGAATTCTAAGATGGGGCCTT 60.750 50.000 0.84 0.00 0.00 4.35
586 587 1.202818 GCGAATTCTAAGATGGGGCCT 60.203 52.381 0.84 0.00 0.00 5.19
587 588 1.239347 GCGAATTCTAAGATGGGGCC 58.761 55.000 3.52 0.00 0.00 5.80
588 589 1.967319 TGCGAATTCTAAGATGGGGC 58.033 50.000 3.52 0.00 0.00 5.80
589 590 2.738846 CGATGCGAATTCTAAGATGGGG 59.261 50.000 3.52 0.00 0.00 4.96
590 591 2.738846 CCGATGCGAATTCTAAGATGGG 59.261 50.000 3.52 0.00 0.00 4.00
591 592 2.738846 CCCGATGCGAATTCTAAGATGG 59.261 50.000 3.52 0.00 0.00 3.51
592 593 2.738846 CCCCGATGCGAATTCTAAGATG 59.261 50.000 3.52 0.00 0.00 2.90
593 594 2.872038 GCCCCGATGCGAATTCTAAGAT 60.872 50.000 3.52 0.00 0.00 2.40
594 595 1.540363 GCCCCGATGCGAATTCTAAGA 60.540 52.381 3.52 0.00 0.00 2.10
595 596 0.868406 GCCCCGATGCGAATTCTAAG 59.132 55.000 3.52 0.00 0.00 2.18
596 597 0.534203 GGCCCCGATGCGAATTCTAA 60.534 55.000 3.52 0.00 0.00 2.10
597 598 1.070786 GGCCCCGATGCGAATTCTA 59.929 57.895 3.52 0.00 0.00 2.10
598 599 2.203209 GGCCCCGATGCGAATTCT 60.203 61.111 3.52 0.00 0.00 2.40
599 600 2.203209 AGGCCCCGATGCGAATTC 60.203 61.111 0.00 0.00 0.00 2.17
600 601 2.203209 GAGGCCCCGATGCGAATT 60.203 61.111 0.00 0.00 0.00 2.17
601 602 2.550699 TTTGAGGCCCCGATGCGAAT 62.551 55.000 0.00 0.00 0.00 3.34
602 603 2.550699 ATTTGAGGCCCCGATGCGAA 62.551 55.000 0.00 0.00 0.00 4.70
603 604 2.550699 AATTTGAGGCCCCGATGCGA 62.551 55.000 0.00 0.00 0.00 5.10
604 605 1.666209 AAATTTGAGGCCCCGATGCG 61.666 55.000 0.00 0.00 0.00 4.73
605 606 0.103026 GAAATTTGAGGCCCCGATGC 59.897 55.000 0.00 0.00 0.00 3.91
606 607 1.406539 CAGAAATTTGAGGCCCCGATG 59.593 52.381 0.00 0.00 0.00 3.84
607 608 1.284785 TCAGAAATTTGAGGCCCCGAT 59.715 47.619 0.00 0.00 0.00 4.18
608 609 0.695924 TCAGAAATTTGAGGCCCCGA 59.304 50.000 0.00 0.00 0.00 5.14
609 610 1.474077 CTTCAGAAATTTGAGGCCCCG 59.526 52.381 0.00 0.00 0.00 5.73
610 611 2.807676 TCTTCAGAAATTTGAGGCCCC 58.192 47.619 0.00 0.00 0.00 5.80
611 612 3.131755 CCATCTTCAGAAATTTGAGGCCC 59.868 47.826 0.00 0.00 0.00 5.80
612 613 3.429960 GCCATCTTCAGAAATTTGAGGCC 60.430 47.826 0.00 0.00 31.82 5.19
613 614 3.429960 GGCCATCTTCAGAAATTTGAGGC 60.430 47.826 0.00 0.00 35.23 4.70
614 615 3.131755 GGGCCATCTTCAGAAATTTGAGG 59.868 47.826 4.39 0.00 0.00 3.86
615 616 4.021916 AGGGCCATCTTCAGAAATTTGAG 58.978 43.478 6.18 0.00 0.00 3.02
616 617 3.765511 CAGGGCCATCTTCAGAAATTTGA 59.234 43.478 6.18 0.00 0.00 2.69
617 618 3.512724 ACAGGGCCATCTTCAGAAATTTG 59.487 43.478 6.18 0.00 0.00 2.32
618 619 3.782992 ACAGGGCCATCTTCAGAAATTT 58.217 40.909 6.18 0.00 0.00 1.82
619 620 3.463048 ACAGGGCCATCTTCAGAAATT 57.537 42.857 6.18 0.00 0.00 1.82
620 621 3.094572 CAACAGGGCCATCTTCAGAAAT 58.905 45.455 6.18 0.00 0.00 2.17
621 622 2.158475 ACAACAGGGCCATCTTCAGAAA 60.158 45.455 6.18 0.00 0.00 2.52
622 623 1.425066 ACAACAGGGCCATCTTCAGAA 59.575 47.619 6.18 0.00 0.00 3.02
623 624 1.067295 ACAACAGGGCCATCTTCAGA 58.933 50.000 6.18 0.00 0.00 3.27
624 625 1.915141 AACAACAGGGCCATCTTCAG 58.085 50.000 6.18 0.00 0.00 3.02
625 626 2.380064 AAACAACAGGGCCATCTTCA 57.620 45.000 6.18 0.00 0.00 3.02
626 627 3.421844 ACTAAACAACAGGGCCATCTTC 58.578 45.455 6.18 0.00 0.00 2.87
627 628 3.525800 ACTAAACAACAGGGCCATCTT 57.474 42.857 6.18 0.00 0.00 2.40
628 629 3.181434 TGAACTAAACAACAGGGCCATCT 60.181 43.478 6.18 0.00 0.00 2.90
629 630 3.057526 GTGAACTAAACAACAGGGCCATC 60.058 47.826 6.18 0.00 0.00 3.51
630 631 2.890945 GTGAACTAAACAACAGGGCCAT 59.109 45.455 6.18 0.00 0.00 4.40
631 632 2.092103 AGTGAACTAAACAACAGGGCCA 60.092 45.455 6.18 0.00 0.00 5.36
632 633 2.583143 AGTGAACTAAACAACAGGGCC 58.417 47.619 0.00 0.00 0.00 5.80
633 634 4.386711 AGTAGTGAACTAAACAACAGGGC 58.613 43.478 0.00 0.00 36.36 5.19
634 635 6.937436 AAAGTAGTGAACTAAACAACAGGG 57.063 37.500 0.00 0.00 37.50 4.45
635 636 9.878599 CATTAAAGTAGTGAACTAAACAACAGG 57.121 33.333 0.00 0.00 37.50 4.00
644 645 9.731819 CGCTTAGATCATTAAAGTAGTGAACTA 57.268 33.333 0.00 0.00 37.50 2.24
645 646 7.707035 CCGCTTAGATCATTAAAGTAGTGAACT 59.293 37.037 0.00 0.00 41.49 3.01
646 647 7.491696 ACCGCTTAGATCATTAAAGTAGTGAAC 59.508 37.037 0.00 0.00 0.00 3.18
647 648 7.553334 ACCGCTTAGATCATTAAAGTAGTGAA 58.447 34.615 0.00 0.00 0.00 3.18
648 649 7.068348 AGACCGCTTAGATCATTAAAGTAGTGA 59.932 37.037 0.00 0.00 0.00 3.41
649 650 7.203910 AGACCGCTTAGATCATTAAAGTAGTG 58.796 38.462 0.00 0.00 0.00 2.74
650 651 7.349412 AGACCGCTTAGATCATTAAAGTAGT 57.651 36.000 0.00 0.00 0.00 2.73
651 652 9.182933 GTAAGACCGCTTAGATCATTAAAGTAG 57.817 37.037 0.00 0.00 37.28 2.57
652 653 8.689061 TGTAAGACCGCTTAGATCATTAAAGTA 58.311 33.333 0.00 0.00 37.28 2.24
653 654 7.553334 TGTAAGACCGCTTAGATCATTAAAGT 58.447 34.615 0.00 0.00 37.28 2.66
654 655 8.594881 ATGTAAGACCGCTTAGATCATTAAAG 57.405 34.615 0.00 0.00 36.22 1.85
655 656 8.958119 AATGTAAGACCGCTTAGATCATTAAA 57.042 30.769 0.00 0.00 39.03 1.52
656 657 8.958119 AAATGTAAGACCGCTTAGATCATTAA 57.042 30.769 0.00 0.00 39.03 1.40
657 658 8.958119 AAAATGTAAGACCGCTTAGATCATTA 57.042 30.769 0.00 0.00 39.03 1.90
658 659 7.865706 AAAATGTAAGACCGCTTAGATCATT 57.134 32.000 0.00 0.00 39.03 2.57
659 660 7.552687 TGAAAAATGTAAGACCGCTTAGATCAT 59.447 33.333 0.00 0.00 39.03 2.45
660 661 6.876789 TGAAAAATGTAAGACCGCTTAGATCA 59.123 34.615 0.00 0.00 39.03 2.92
661 662 7.277981 TCTGAAAAATGTAAGACCGCTTAGATC 59.722 37.037 0.00 0.00 39.03 2.75
662 663 7.103641 TCTGAAAAATGTAAGACCGCTTAGAT 58.896 34.615 0.00 0.00 40.98 1.98
663 664 6.460781 TCTGAAAAATGTAAGACCGCTTAGA 58.539 36.000 0.00 0.00 37.28 2.10
664 665 6.183360 CCTCTGAAAAATGTAAGACCGCTTAG 60.183 42.308 0.00 0.00 37.28 2.18
665 666 5.642063 CCTCTGAAAAATGTAAGACCGCTTA 59.358 40.000 0.00 0.00 35.56 3.09
666 667 4.455877 CCTCTGAAAAATGTAAGACCGCTT 59.544 41.667 0.00 0.00 38.15 4.68
667 668 4.003648 CCTCTGAAAAATGTAAGACCGCT 58.996 43.478 0.00 0.00 0.00 5.52
668 669 4.000988 TCCTCTGAAAAATGTAAGACCGC 58.999 43.478 0.00 0.00 0.00 5.68
669 670 5.238583 ACTCCTCTGAAAAATGTAAGACCG 58.761 41.667 0.00 0.00 0.00 4.79
670 671 8.794335 ATTACTCCTCTGAAAAATGTAAGACC 57.206 34.615 0.00 0.00 0.00 3.85
895 899 4.349365 AGAAAGGAGACAAGGAGGAGTAG 58.651 47.826 0.00 0.00 0.00 2.57
898 902 3.837731 AGAAGAAAGGAGACAAGGAGGAG 59.162 47.826 0.00 0.00 0.00 3.69
1108 1112 2.267642 CGCCGGATCCTTGACCAA 59.732 61.111 5.05 0.00 0.00 3.67
1521 1525 3.782443 GGGTGGCGACCGAGGATT 61.782 66.667 12.15 0.00 44.23 3.01
1605 1609 2.626780 CGAGACAGCCAGACGGTCA 61.627 63.158 11.27 0.00 44.95 4.02
1853 1857 3.240134 TTGTGGCGCTCTGTCCTCC 62.240 63.158 7.64 0.00 0.00 4.30
1953 1957 3.008923 TCTGTGTGCCATGTATCCTTGAA 59.991 43.478 0.00 0.00 0.00 2.69
1989 1993 1.374252 CGTGCCACCGTAAGCTTCT 60.374 57.895 0.00 0.00 0.00 2.85
2062 2066 1.826921 CAGCCCTCATCATGGTGGC 60.827 63.158 6.03 9.64 42.48 5.01
2133 2137 2.171840 TCTTCTCCCTCACTTTCCTCG 58.828 52.381 0.00 0.00 0.00 4.63
2185 2189 5.125417 GGTGCACTAAGAATTAATTGAGCCA 59.875 40.000 17.98 0.00 0.00 4.75
2195 2199 5.105997 GCTTCATTCAGGTGCACTAAGAATT 60.106 40.000 17.98 6.28 0.00 2.17
2288 2293 2.093306 TTCTGGAATGTGCGTTCGAT 57.907 45.000 0.00 0.00 0.00 3.59
2361 2368 2.894763 ATGACATGAGAGAGCTCTGC 57.105 50.000 23.91 13.57 40.61 4.26
2364 2371 4.934001 TGACAAAATGACATGAGAGAGCTC 59.066 41.667 5.27 5.27 41.67 4.09
2373 2380 2.627221 TGTGGGGTGACAAAATGACATG 59.373 45.455 0.00 0.00 0.00 3.21
2423 2430 5.544136 TGCAGGAAAAAGAAAAGCAAAAC 57.456 34.783 0.00 0.00 0.00 2.43
2451 2458 7.169591 TCCATTTTTCAATCTCCAATGCATTT 58.830 30.769 9.83 0.00 0.00 2.32
2563 2570 8.896744 AGATTTGGTGTTGTAGATGTTGATATG 58.103 33.333 0.00 0.00 0.00 1.78
2639 2646 5.536916 CCAACCTTAGTACAATTTTGGGACA 59.463 40.000 0.00 0.00 0.00 4.02
2640 2647 6.020971 CCAACCTTAGTACAATTTTGGGAC 57.979 41.667 0.00 0.00 0.00 4.46
2642 2649 5.400066 CCCAACCTTAGTACAATTTTGGG 57.600 43.478 14.36 14.36 44.30 4.12
2643 2650 5.536916 TGTCCCAACCTTAGTACAATTTTGG 59.463 40.000 0.00 1.19 33.25 3.28
2644 2651 6.264518 AGTGTCCCAACCTTAGTACAATTTTG 59.735 38.462 0.00 0.00 0.00 2.44
2645 2652 6.370453 AGTGTCCCAACCTTAGTACAATTTT 58.630 36.000 0.00 0.00 0.00 1.82
2646 2653 5.948842 AGTGTCCCAACCTTAGTACAATTT 58.051 37.500 0.00 0.00 0.00 1.82
2647 2654 5.578157 AGTGTCCCAACCTTAGTACAATT 57.422 39.130 0.00 0.00 0.00 2.32
2648 2655 5.578157 AAGTGTCCCAACCTTAGTACAAT 57.422 39.130 0.00 0.00 0.00 2.71
2649 2656 6.691255 ATAAGTGTCCCAACCTTAGTACAA 57.309 37.500 0.00 0.00 0.00 2.41
2650 2657 6.691255 AATAAGTGTCCCAACCTTAGTACA 57.309 37.500 0.00 0.00 0.00 2.90
2651 2658 7.094506 CCAAAATAAGTGTCCCAACCTTAGTAC 60.095 40.741 0.00 0.00 0.00 2.73
2652 2659 6.943718 CCAAAATAAGTGTCCCAACCTTAGTA 59.056 38.462 0.00 0.00 0.00 1.82
2653 2660 5.773176 CCAAAATAAGTGTCCCAACCTTAGT 59.227 40.000 0.00 0.00 0.00 2.24
2654 2661 5.185056 CCCAAAATAAGTGTCCCAACCTTAG 59.815 44.000 0.00 0.00 0.00 2.18
2655 2662 5.081032 CCCAAAATAAGTGTCCCAACCTTA 58.919 41.667 0.00 0.00 0.00 2.69
2656 2663 3.901222 CCCAAAATAAGTGTCCCAACCTT 59.099 43.478 0.00 0.00 0.00 3.50
2657 2664 3.141272 TCCCAAAATAAGTGTCCCAACCT 59.859 43.478 0.00 0.00 0.00 3.50
2658 2665 3.257375 GTCCCAAAATAAGTGTCCCAACC 59.743 47.826 0.00 0.00 0.00 3.77
2659 2666 3.057806 CGTCCCAAAATAAGTGTCCCAAC 60.058 47.826 0.00 0.00 0.00 3.77
2660 2667 3.150767 CGTCCCAAAATAAGTGTCCCAA 58.849 45.455 0.00 0.00 0.00 4.12
2661 2668 2.553466 CCGTCCCAAAATAAGTGTCCCA 60.553 50.000 0.00 0.00 0.00 4.37
2662 2669 2.089201 CCGTCCCAAAATAAGTGTCCC 58.911 52.381 0.00 0.00 0.00 4.46
2663 2670 3.007635 CTCCGTCCCAAAATAAGTGTCC 58.992 50.000 0.00 0.00 0.00 4.02
2664 2671 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
2665 2672 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
2666 2673 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
2667 2674 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
2668 2675 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
2669 2676 2.026636 CACTCCCTCCGTCCCAAAATAA 60.027 50.000 0.00 0.00 0.00 1.40
2670 2677 1.557832 CACTCCCTCCGTCCCAAAATA 59.442 52.381 0.00 0.00 0.00 1.40
2671 2678 0.328258 CACTCCCTCCGTCCCAAAAT 59.672 55.000 0.00 0.00 0.00 1.82
2672 2679 1.057851 ACACTCCCTCCGTCCCAAAA 61.058 55.000 0.00 0.00 0.00 2.44
2673 2680 1.057851 AACACTCCCTCCGTCCCAAA 61.058 55.000 0.00 0.00 0.00 3.28
2674 2681 1.057851 AAACACTCCCTCCGTCCCAA 61.058 55.000 0.00 0.00 0.00 4.12
2675 2682 0.178926 TAAACACTCCCTCCGTCCCA 60.179 55.000 0.00 0.00 0.00 4.37
2676 2683 0.978907 TTAAACACTCCCTCCGTCCC 59.021 55.000 0.00 0.00 0.00 4.46
2677 2684 1.345415 TGTTAAACACTCCCTCCGTCC 59.655 52.381 0.00 0.00 0.00 4.79
2678 2685 2.825861 TGTTAAACACTCCCTCCGTC 57.174 50.000 0.00 0.00 0.00 4.79
2679 2686 3.181448 ACAATGTTAAACACTCCCTCCGT 60.181 43.478 0.00 0.00 0.00 4.69
2680 2687 3.188460 CACAATGTTAAACACTCCCTCCG 59.812 47.826 0.00 0.00 0.00 4.63
2681 2688 3.506067 CCACAATGTTAAACACTCCCTCC 59.494 47.826 0.00 0.00 0.00 4.30
2682 2689 4.394729 TCCACAATGTTAAACACTCCCTC 58.605 43.478 0.00 0.00 0.00 4.30
2683 2690 4.447138 TCCACAATGTTAAACACTCCCT 57.553 40.909 0.00 0.00 0.00 4.20
2684 2691 5.010282 AGATCCACAATGTTAAACACTCCC 58.990 41.667 0.00 0.00 0.00 4.30
2685 2692 6.575162 AAGATCCACAATGTTAAACACTCC 57.425 37.500 0.00 0.00 0.00 3.85
2686 2693 7.094805 TGCTAAGATCCACAATGTTAAACACTC 60.095 37.037 0.00 0.00 0.00 3.51
2687 2694 6.714810 TGCTAAGATCCACAATGTTAAACACT 59.285 34.615 0.00 0.00 0.00 3.55
2688 2695 6.908825 TGCTAAGATCCACAATGTTAAACAC 58.091 36.000 0.00 0.00 0.00 3.32
2689 2696 6.939730 TCTGCTAAGATCCACAATGTTAAACA 59.060 34.615 0.00 0.00 0.00 2.83
2690 2697 7.377766 TCTGCTAAGATCCACAATGTTAAAC 57.622 36.000 0.00 0.00 0.00 2.01
2767 2776 6.698766 CCTCCATTTCAAAAGAACTGAAGTTG 59.301 38.462 0.00 0.00 38.56 3.16
2787 2797 1.903877 GCTGTTAGCTGCTCCCTCCA 61.904 60.000 4.91 0.00 38.45 3.86
2841 2852 6.212955 TGCTAAGCAACAATGTCCTTAAAAC 58.787 36.000 7.52 3.06 34.76 2.43
3002 3013 3.119708 GCTGCTCTTCCAAACATAACCAG 60.120 47.826 0.00 0.00 0.00 4.00
3028 3039 5.772825 TGTATATGGCTGCAAGGAAAATC 57.227 39.130 0.50 0.00 0.00 2.17
3066 3077 2.357637 CTGGTTTCTGAAGGACGCAAAA 59.642 45.455 0.00 0.00 0.00 2.44
3113 3124 5.103515 AGCCCACCATATGATTTCCTAAAGT 60.104 40.000 3.65 0.00 0.00 2.66
3138 3149 6.904626 AGGCAAGTATAATTGGTGATTCTCT 58.095 36.000 14.26 0.00 0.00 3.10
3145 3156 7.936847 TCACCTTATAGGCAAGTATAATTGGTG 59.063 37.037 14.26 10.71 39.62 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.