>input_sequence_58561
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-------------------------------------------ATGGCGGGGCACTTGCTGGTGGCGGTGACGGGGAGGA
GGAGAAGATGGTGGGAGGCGCCATTGTTTGCGGCGGAGCAGCGCGCGACGCTGGTTAACGTGAAGCTGAAGTTGGTCAAG
GATCCGGCGCTCGACGGGGCGTTGTCGCGGCAGCGCCACCTCCGCGCTGCCCACCACCTGCTCGACCTCGCGTCCTCGCG
GCCCGGCCACCGCATCTCGTGCCCCGAGCTCCTCGCCGACAAGTCCGTCCACAGGATGTTTGGCTCCGCGGCCGCTGCGC
TCGCCTTCCTCCGCAGATACCACACCCTGTTCGCGCTCTCCCGCCGCGGTGGAGGCGGCGTGTCCCTCACGGACGCAGCG
CTCGGCCTCCGGTGCCGGGAACTGGACTGCCTGGACGCCTCGGGGCCCGACCTGCTCGCTCGCCTTCGCCGCCTCCTCAT
GCTCACCCTGCCGCGGTCGCTCCCGCTCCACACTGTCGACCTTCTCCGCTGGGACTTGGGCCTGCCCCGCGACTACCGCG
CATCAATCCTCGGTCGCCACCCTGACCACTTCGCCCTTAGGCAGCCCGAGGGTGACGAGCGCATCTGGCTCCACCTCCTC
TCCTGGGATGACCGTCTGGCTGTCTCGGAACTCGAGAAGGCTGCGGCGGGCGGCGACACCACCTGCCTCCCATTTCCGGT
GAGCTTCACGAGGGGGTTTGGCCTGAGGAGCAAGTCTATGGACTGGCTGAAGGAGTGGCAGACGCTTCCATACACTAACC
CGTACGCCGACGCCTCCGGCCTTGACCGTCGCACTGATGTGTCAGAGAAGCGGAATGTCGGAGTGTTCCATGAGCTGCTG
CACCTCACATTGGCAAGGAGGACAGAGCGCCACAACGTGAGCAACATGAGGATGCTTCTTGGCATGCCACAGAAGTTTAC
CAAGGTATTTGAGCGTCACCCGGGCATTTTTTACCTTTCAAGGATACATGGCACACAGACAGTTGTACTCAGAGAAGCTT
ACGGTGGCACGAGCCAGCTGCTTGAGAAGCATGCACATCCACTTGTTGCTATCAGGGAGGAGTATGCCACCATGATGAGG
GCTGCATTGCCACCAAGGAAAAGCAGAGAAAGCTGCAACTATTGTGGTGAACTGGACGAGGAAAGTGAGGGAGAAGAAGG
AACTGAACTCTCTTAA----------------------------------------------------------------
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>chr1A_1_TraesCS1A01G079600
CCTACCCTTCTTTTTTATTGTCCATAAAAATTATTCTCATAAATAATCTCATGCCGTACCAAATGTGGGACTGGGACTAA
CATGTCACTTCTCAAGTATAATCCCTCAAACAACTCCATCTCATAAATTCCCACTCCCTTTCCCTTAAACTACCAACATG
TTGCAAAGGTATGATATACCGTGCTTTCGCATATGTGTTTGCTTTGTGTACATGACTACATGTTCTATAGAAGATCAACA
AGGGAATGAGCATACGAATAATTCATCTTTTTTAACAGGATATAGTTCCATATTTTTTATAAATTGATAGTGGCGACTTT
TCTAAAGTAGAAAAAAGATGGTAGTGAATAATACTCTGAGTGGTATCTATTGACATCCTATGCTAATTTTGTTATGTTCG
TATGAGCAAATTATTGTTAGTTATGTTGATTACATTTTATATATGTTACCTTTTCTATGAACATATTTAAAAAAATGATG
ATATCTATTTTGCCACACTAAAAAAACAATTTTCTCCTACCACTATTTACGAGTGGTCATCCATCGATATTTAGAAAGCT
ACGACACACGTCATTTTTGAATTTTAAGGCCCCATCTTAGAATTCGCATCGGGGCCTCAAATTTCTGAAGATGGCCCTGT
TGTTTAGTTCACTACTTTAATGATCTAAGCGGTCTTACATTTTTCAGAGGAGTAATTATATTAGACAAAATTATGTTCAA
AAAAATATACTATTAGAAAAAATGCCTTTGCATGTCTTTTCTTA-A--AAAAGAAAAACAAGAGAGGAGCGGGCAGCCGT
GCTCCCCCGAGAGACAGAGGGGGGAAACAGAGCCGCGCTCCTGCCTCGCGACCGCGCCGGCCGCCGCCGCCGCCCCCTTT
ACGCTGCTAGGTTTCCTCCTACTCCTCCTTGTCTCCTTTCTTCTCGGCCTCCTGGTCCGGTGACGGCGGGCGAGCGTGGC
GGTCCGCGAAAACGAGCACCTGGGCAGCGGCGAGTCTCGTTCCATGGCGGGGCACTTGCTGGTGGCGGTGACGGGGAGGA
GGAGAAGATGGTGGGAGGCGCCATTGTTTGCGGCGGAGCAGCGCGCGACGCTGGTTAACGTGAAGCTGAAGTTGGTCAAG
GATCCGGCGCTCGACGGGGCGTTGTCGCGGCAGCGCCACCTCCGCGCTGCCCACCACCTGCTCGACCTCGCGTCCTCGCG
GCCCGGCCACCGCATCTCGTGCCCCGAGCTCCTCGCCGACAAGTCCGTCCACAGGATGTTTGGCTCCGCGGCCGCTGCGC
TCGCCTTCCTCCGCAGATACCACACCCTGTTCGCGCTCTCCCGCCGCGGTGGAGGCGGCGTGTCCCTCACGGACGCAGCG
CTCGGCCTCCGGTGCCGGGAACTGGACTGCCTGGACGCCTCGGGGCCCGACCTGCTCGCTCGCCTTCGCCGCCTCCTCAT
GCTCACCCTGCCGCGGTCGCTCCCGCTCCACACTGTCGACCTTCTCCGCTGGGACTTGGGCCTGCCCCGCGACTACCGCG
CATCAATCCTCGGTCGCCACCCTGACCACTTCGCCCTTAGGCAGCCCGAGGGTGACGAGCGCATCTGGCTCCACCTCCTC
TCCTGGGATGACCGTCTGGCTGTCTCGGAACTCGAGAAGGCTGCGGCGGGCGGCGACACCACCTGCCTCCCATTTCCGGT
GAGCTTCACGAGGGGGTTTGGCCTGAGGAGCAAGTCTATGGACTGGCTGAAGGAGTGGCAGACGCTTCCATACACTAACC
CGTACGCCGACGCCTCCGGCCTTGACCGTCGCACTGATGTGTCAGAGAAGCGGAATGTCGGAGTGTTCCATGAGCTGCTG
CACCTCACATTGGCAAGGAGGACAGAGCGCCACAACGTGAGCAACATGAGGATGCTTCTTGGCATGCCACAGAAGTTTAC
CAAGGTATTTGAGCGTCACCCGGGCATTTTTTACCTTTCAAGGATACATGGCACACAGACAGTTGTACTCAGAGAAGCTT
ACGGTGGCACGAGCCAGCTGCTTGAGAAGCATGCACATCCACTTGTTGCTATCAGGGAGGAGTATGCCACCATGATGAGG
GCTGCATTGCCACCAAGGAAAAGCAGAGAAAGCTGCAACTATTGTGGTGAACTGGACGAGGAAAGTGAGGGAGAAGAAGG
AACTGAACTCTCTTAATGAATGTCTTGTTGGCTCAATTAATTCTTAGTGCACCTGAATGAAGCAAAGCTAGTGACTTGAG
AGAATGGATGCTCTCTGATGGTTCAG-AGGTATGTGCATATTGATGCATCGTATCGAACGCACATTCCAGAATTTAGGAT
ATTACAATGCTTACATTATTAGGAAGCTTTCTTTT--CAAGATCTTTGCAGAGCTCTCTCATGTCATTTTGTCACCCCAC
ATAACAATTTGTTTATATCATTGCCTCATGTTTTGCTTTTCTTTTTCCTGCAGCTACAAATGCATTGGAGATTGAAAAAT
GGAATATACTCCCTCTGTTCCAAAATAATTGAAGTTATAGGTTTGTCCTAAGTCAAACTTCATTAACTTTGACCAAGTCT
ATATAAAAACATATCAACATCTACAACACCAAATCTGCTTCGTTAGATTCATTATGATATGTATTATCATATAATATACT
CCCTTTGTCCCAAAATTGTACTAAGGTTGGGACACTTATTTTGGGACGGAGGGAGTGT--TTAACATTGTGGATCTTAGC
AGATTTTTCTATAGACTTTACCAAACTTCAAAAAGTTTCACTTAGGACAATCCTACAACTT-CAGTTCTTTTGAAATGGA
GGGAGCAGCTAACAGCAAGCGCCTTTTCTTGTCCA-GAAAAAATATTTGTGGTTTTAAGGACATTGTTGCTTAGCAGACT
GGGATGCCGTTTGAGTATGGGGCCAAACAGTACCTACCTTGGATGTTTGTCTCTGTTTTTCTAAAGATGACCTTTTCTTC
CCTGTTATGCTGTCCTAAAAGGCCAATGTCTTCAAGCATAGTTATATAGGGCCTGGTTATGTTTGGAAGAGCAGCTTTGA
TTTTCCTTGCAGCCATATACAAGTTAGAATTTTACATTTTGCGTCCTTCAGAAACCAGACAGAGCCAACTTCAACGGTCT
TTTACTTTAGGAAATCATATGGTGGGCTAGAGAATCACCAATTATACTTGCCTATAAGGTGAC
>chr1B_731
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----------TATCAGACAAAATGCCTTTGGATGTCTTTTCTTAGAAGAAAAAAAAAACAATAGAGGAGCGGGCAGCCGT
GCGCCCCCGAGAGACAGAGGGGGGAAACAGAGC-GCGCTCCTGCCTCACGACCGCACCGGCCGCCGCCGCCGCCGCCTTT
ACGCTGCTAGGTTTCCTCATAGTCCTCCTTGTCTCCTTTCTTCTCGGCCTCCCAGTACGGTGACGGCGGGCGAGCGTCGC
GGTCCGCGAAAGCGAGCACCTGGGCAGCGGCGAGTTTCGTTCCATGGCGGGGCACTTGCTGGTGGCGGTGACGGGGAGGA
GGAGAAGATGGTGGGAAGCGCCATTGTTTGCGGCGGAGCAGCGCGCGACGCTGGTTAACGTGAAGCTCAAGCTGGTCAAG
GATCCGGCACTCGACGGGGCGCTGTCGCGCCAGCGCCACCTCCGCGCTGCCCACCACCTGCTCGACCTCGTGTCCTCGCG
GCCCGGCCACCGTATCTCGTGCCCCGAGCTCCTCGCCGACAAGTCCGTCCACAAGATGTTTGGCTCCGCGGACGCCGCGC
TCGCCTTCCTCCGCAGATACCACACCCTGTTCGTGCTCTCCCGCCGCGGTGGAGGCGGTGTGTCCCTCACGGACGCGGCG
CTCGGCCTCCGGTGCCGGGAACTGGACTGCCTGGACGCCTCGGAGCCCGACCTGCTCGCTTGCCTCCGCCGCCTCCTCAT
GCTCACCCTGTCGCGCTCGCTCCCGCTCCACACTGTCGACCTTCTCCGCTGGGACTTGGGCCTGCCCCGCGACTACCGCG
CCTCGATCCTCAGTCGCCAGCCTGACCACTTCGCCCTCAAGCAGCCCGAGGGTGACGAGCGCATCTGGCTCCACCTCCTC
TCCTGGGACGACCGTCTGGCTGTCTCGGAACTCGAGAAGGCTGCGGCGGGCGGCGACACCACCTGCCTCCCATTTCCGGT
GAGCTTCACGAGGGGGTTTGGCCTGAGGAGCAAGTCTATGGACTGGCTGAAGGAGTGGCAGAAGCTTCCATACACTAACC
CATACACCGACGCCTCCGGCCTTGACCGTCGCACTGATGTGTCAGAGAAGCGGAATGTGGGAGTGTTCCATGAACTGCTG
CACCTCACATTGGCAAAGAGGACAGAGCGCCACAACGTGAGCAACATGAGGAAGCTTCTTGGCATGCCACAGAAGTTTAC
CAAGGTATTTGAGCGTCACCCGGGCATTTTTTACCTCTCAAGGATACATGGCACACAGACAGTTGTACTCAGGGAAGCTT
ACGGTGGCACGAGCCAGCTGCTTGAGAAGCATGCACATCCACTTGTTGCTATCAGGGAGGAGTATACCACCATGATGAGG
GCTGCATTGCCACCAAGGAGGAGCAGAGAAAGCTTCAAATATTGTGGT-AACTGGATGAGGAAAGTGAGGGAGAAGAAGG
AACTGAACTCTCTTAATG-ATGTCTTGTAGGCTCAATTGATTCTTAGTGCACCTGAATGAAGCAAAGCTAGTGACTTGAG
AGAATGGATGCTCTCTGATGGTTCAGCAGGTATGTGAAAATTGATGCATCGTGTTGAACGCACATTCCAGAATTTAGGGA
ATTACAATGCCTACATTATTAAGAAGCTTTCTTTTACCAAGATCTTTACACAGCTCTTTTATGTCATTTTGTCACCCCAC
AGAACAATATGTTTATACCATTTCCTCATATTTTGCTTTTCTTTTTCCTGCAGCTACGAT----TTGGAGATTGAAAAAT
GGAATATACTCCCTCTGTTCCAAAATAATTGAAGTTATAGGTTTGTCCCAAGTCAAACTTCATTAACTTTGACCAAGTCT
ATATAAAAATATATCAACATCTACAACACCAAATTTGCTTCGTTAGATTCATTATGATATGTATTATTATATAATATATA
---------------------------------------------------------T--TTAACATTGTGGATCTTAGC
AGATTTTTCTATAGACTTTCTCAAACTTCAAAAAGTTTCACTTAGGACAATCCTTGAACTTCAG----TTTTGAAACGGA
GGGAGCAGCTAACAGCAAGTGCCTTTTCTTGTCCAAGAAAAAATATTTGTGATTTTAAGGACATTGTTGCTTAGCAGACT
GGGATGCCATTTGAGTATGGGGCCAAACAGTACCTACCTTGGATGTTTGTCTCTGTTTTTCTAAAGCTGATCTTTTCTTC
CCTGTTATGCAGTCCTAAAAAGCCAATGTCTTCAAGCATAGTTATATAGGGCTTGGTTATGTTTGGAAGAGCAGCTTTCA
TTTTCCTTGCAGCCATATACAAGTTAGAATTTTACAATTTGCGTCCTTCAGAAACCAGACAGAGCCAACTTCAATGGTCT
TTTCCTTTAGGAAATCATATGGTGGGCTGGAGAATTACCAATTATACTTGCCTATAA------
>chr1D_739
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------------------AAAATGCCTTTGGATGTCTTTTCTTAAA--AAAAGAAAAACAAGAGAGGAGCGGGCAGACGT
GCTCCCCCGAGAGACAGAGGGGGGAAACAGAGCCGCGCTCCTGCCTCACGACCGCGCCGGCCGCCGCCGCCGCCCCCTTT
ACGCTGCTAGGTTTCCTCATAGTCCTCCTTGACTCCTTTCTTCTCGGCCTCCTAGTCCGGTGACGGCGGGAGACCGTCGC
GGTCCGCGAAAGCGAGCACTTGGGCAGCGGCGAGTTTCGTTCCATGGCGGGGCACTTGCTGGTGGCGGTGGCGGGGAGGA
GGAGAAGATGGTGGGAAGCGCCATTGTTTGCGGCGGAGCAGCGCGCGACGCTGGTTAACGTGAAGCTGAAGCTGGTCAAG
GATCCGGCACTCGACGGGGCGTTGTCGCGCCAGCGCCACCTCCGCGCTGCCCACCACCTGCTCGACCTCGTGTCCTCGCG
GCCCGGCCACCGTATCTCGTGCCCCGAGCTCCTCGCCGACAAGTCCGTCCACAAGATGCTTGGCTCCACGGCCGCCGTGC
TCGCCTTCCTCCGCAGATACCACACCCTGTTCTCGCTCTCCCGCCGCGGTGGAGGCGGCGTGTCCCTCACGGACGCAGCG
CTCGGCCTCCGGTGCCGGGAACTGGACTGCCTGGACGCCTCGGAGCCCGACCTGCTCGCTCGCCTCCGCCGCCTCCTCAT
GCTCACCCTGCCGCGCTCGCTCCCGCTCCACACCGTCGACCTTCTCCGCTGGGACTTGGGCCTGCCCCGCGACTACCGCG
CATCGATCCTGGCTCGCCACCTCGACCACTTCGACCTTAAGCAGCCCGAGGGCGACGAGCGCATCTGGCTCCACCTCCTC
TCCTGGGACGACCGTCTGGCTGTCTCGGAACTCGAGAAGGCTGCGGCAGGTGGCGACACCACCTGTCTCCCATTTCCGGT
GAGCTTCACGAGGGGGTTTGGCCTGAGGAGCAAGTCTATGGACTGGCTGAAGGAGTGGCAGACGCTTCCATACACTAACC
CGTACGCCGACGCCTCGGGCCTTGACCGTCGCACTGATGTGTCAGAGAAGCGGAATGTCGGAGTGTTCCATGAGCTGCTG
CACCTCACATTGGCAAAGAGGACAGAGCGCCACAACGTGAGCAACATGAGGAAGCTTCTTGGCATGCCACAGAAGTTTAC
CAAGGTATTTGAGCGTCACCCCGGCATTTTTTACCTCTCAAGGATACATGGTACACAGACAGTTGTACTCAGGGAAGCTT
ACGGTGGCACGAGCCAGCTGCTTGAGAAGCATGCGCATCCACTTGTTGCTATCAGGGAGGAGTATACCACCATGATGAGG
GCTGCATTGCCACCAAGGAGGAGCAGAGAAAGCTGCAACTATTGTGGTGAACTGGATGAGGAAAGTGAGGGAGAAGAAGG
AACTGAACTCTCTTAATGAATGTCTTATAGGCTCAGTTGATTCTTAGTGCACCTGAATGAAGCAAAGCTAGTGACTTGAG
AGAATGGATGCTCTCTGATGGTTCAGCAGGTATGTGCATATTGATGCATCGTGTCGAACGCACATTCCAGAATTTAGGAA
ATTACAATGCCTACATTATTATGAAGCTTTCTTTTTCCAAGATCTTTACACAGCTCTCTTATGTCATTTTGTCAGCCCAC
AGAACAATTTGTTTATATCGTTGCCTCATATTTTGCTTTTCTTTTTCCTGCAGCTACGAATGCGTTGGAGATTGAAAAAT
GGAAT-TACTCCCTCTGTTCCAAAATAATTGAAGTTGTAGGTTTGTCCCAAGTCATACTTCATTAACTTTGAACAAGTCT
ATATAAAAATATATCAACATCTACAACACCAAATTTGCTTCGTTAGATTCATTATGATATGTATTATCATATAATATATA
---------------------------------------------------------TATTTAACATTGTGGATATTAGC
AGATTTTTCTATAGACTTTCTCAAACTTCAAAAAGTTTCACTTAGGACAATCCTAGAACTTGCAGTTCTTTTGAAACGGA
GGGAGCAGCTAACAGCAAGCGCCTTTTCTTGTCT-AGAAAAAATATTTGTGATTTTAAGGACATTGTTGCTTAGCAGACT
GGGATGCCGTTTGAGTATGGGGCCAAACAGTACCTACCTTGGATGTTTGT-TCTGTTTTTCTAAAGATGACATTTTCTTC
CCTGTTATGCAGTCCTAAAAGGCCAATGTCTTCAAGCATAGTTATATAGGGCTTGGTTATGCTTGGAAGAGCAACTTTCA
TTTTCCTTGCAGCCATATACAAGTTAGAATTTTACAATTTGCGTCCTTCAGAAACCAGACAGAGACAACTTCAATGGTCT
TTTCCTTTAGGAAATCATATGGTGGGCTCTACAATTACCAATTATACTTGCCTATAAG-----
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS---S---S------------S-------------------------------------------------
-----------------------------------------------S--------------------------------
------------------S--S-------------------------------S-----------------------S--
-----------S-----------------------S--------------------------------------------
----------------S------------------------------------------------------S--------
--------S--------------------S----------------------------------------S---------
------------S----------------------------------------S---------------------S----
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-------------------------------------------S---------------------S--------------
---------------S----------------------------------------------------------------
----S----------------------------------S----------------------------------------
--------S-----------------------------------------------------------------------
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----------------S-----------------------------------S---------------------------
------------------------------------S-----------------------------------S-------
-----------------------------------------------------------------S--------------
-------------------SS-----------------------------------S-----------------------
----------------------------S---------S-----------------------------------------
----------------------------------------------------S--------------------------S
----------S----------S-------------------------S--S--------S--------------------
-S---------------------------S---------------------------S-----S----------------
------------------------------------------------S-------------------------------
---------S------------------------S-------------------------------------------SS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------
-------------------SS----------------------------------S--------------------S---
---------------------------------------------------S----------------------------
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----------S-----------------------------------------S-------------------------S-
------------------------------------S-------------------------------------S-----
---S------------------------S------S----------------------SSSSS
>forward_625
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---------------------------------------------GCATCGGGGCCTCAAATTTC---------------
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>reverse_1993
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------------------------------------------------------------------------AGAAGCTT
ACGGTGGCACG---------------------------------------------------------------------
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>forward_934
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----------------------------------CCTTTCTTCTCGGCCTCCTG--------------------------
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>reverse_2682
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-----------------------------------------TGGGACGGAGGGAGTGTTTA-------------------
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