Multiple sequence alignment - TraesCS1A01G076700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G076700 chr1A 100.000 4446 0 0 1 4446 59511257 59506812 0.000000e+00 8211
1 TraesCS1A01G076700 chr1D 93.591 1888 69 23 2048 3909 60940227 60938366 0.000000e+00 2769
2 TraesCS1A01G076700 chr1D 96.819 1006 27 1 1061 2061 60941407 60940402 0.000000e+00 1676
3 TraesCS1A01G076700 chr1D 87.951 1054 76 11 1 1051 82334639 82333634 0.000000e+00 1195
4 TraesCS1A01G076700 chr1D 93.186 587 31 2 1 587 61352195 61351618 0.000000e+00 854
5 TraesCS1A01G076700 chr1D 86.992 492 54 7 3904 4387 60938331 60937842 3.020000e-151 545
6 TraesCS1A01G076700 chr1D 89.439 303 27 2 657 958 60949976 60949678 1.170000e-100 377
7 TraesCS1A01G076700 chr1D 93.407 91 5 1 961 1051 60941582 60941493 2.790000e-27 134
8 TraesCS1A01G076700 chr2B 82.222 180 27 5 4185 4361 754779625 754779802 2.770000e-32 150
9 TraesCS1A01G076700 chr2A 81.111 180 29 5 4185 4361 749054762 749054939 6.000000e-29 139


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G076700 chr1A 59506812 59511257 4445 True 8211 8211 100.00000 1 4446 1 chr1A.!!$R1 4445
1 TraesCS1A01G076700 chr1D 60937842 60941582 3740 True 1281 2769 92.70225 961 4387 4 chr1D.!!$R4 3426
2 TraesCS1A01G076700 chr1D 82333634 82334639 1005 True 1195 1195 87.95100 1 1051 1 chr1D.!!$R3 1050
3 TraesCS1A01G076700 chr1D 61351618 61352195 577 True 854 854 93.18600 1 587 1 chr1D.!!$R2 586

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
958 962 0.664767 GCGTGAGAGAACTGCGTCTT 60.665 55.0 0.00 0.0 0.0 3.01 F
1426 1511 0.030638 GCAGAAAAAGAACGCCAGCA 59.969 50.0 0.00 0.0 0.0 4.41 F
2046 2131 0.443869 GCATGCACACACGACCTTAG 59.556 55.0 14.21 0.0 0.0 2.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1996 2081 0.396417 AGACCTCGGATGGACTCCTG 60.396 60.0 0.00 0.0 42.47 3.86 R
3391 3690 0.538057 CAGCCATGGACAACACCAGT 60.538 55.0 18.40 0.0 43.49 4.00 R
3986 4325 0.108138 GTCGGCCAGCTGTATGAACT 60.108 55.0 13.81 0.0 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
130 133 1.028330 CATTCTGGCGAGCACCATGT 61.028 55.000 0.00 0.00 39.54 3.21
152 155 2.504175 TCCTGGGCACTAAATACTCACC 59.496 50.000 0.00 0.00 0.00 4.02
216 219 5.472820 TGTCTGATTTGATAATGCACACACA 59.527 36.000 0.00 0.00 0.00 3.72
219 222 4.522022 TGATTTGATAATGCACACACACCA 59.478 37.500 0.00 0.00 0.00 4.17
221 224 2.435422 TGATAATGCACACACACCAGG 58.565 47.619 0.00 0.00 0.00 4.45
367 370 4.308458 CGTCACGGCCACCCTGAA 62.308 66.667 2.24 0.00 0.00 3.02
368 371 2.358737 GTCACGGCCACCCTGAAG 60.359 66.667 2.24 0.00 0.00 3.02
369 372 3.636231 TCACGGCCACCCTGAAGG 61.636 66.667 2.24 0.00 43.78 3.46
410 413 0.842030 ACCCAGAAGCCTCCACATGA 60.842 55.000 0.00 0.00 0.00 3.07
501 504 0.683179 ATGGATGGTGTCGAGACGGA 60.683 55.000 6.62 0.00 0.00 4.69
597 600 1.671742 GCGGAGTTCCACAGGAAGA 59.328 57.895 0.00 0.00 42.88 2.87
605 608 4.675404 CACAGGAAGACGTGGGAC 57.325 61.111 0.00 0.00 37.48 4.46
632 635 1.738099 CCAACGTGAAGCTCCTCGG 60.738 63.158 0.00 0.00 0.00 4.63
636 639 1.066587 CGTGAAGCTCCTCGGATCC 59.933 63.158 0.00 0.00 0.00 3.36
639 642 1.360911 GAAGCTCCTCGGATCCGTC 59.639 63.158 32.15 17.47 40.74 4.79
649 652 2.652095 GGATCCGTCCGGGTTCACA 61.652 63.158 0.00 0.00 36.40 3.58
651 654 3.291101 ATCCGTCCGGGTTCACACG 62.291 63.158 0.00 2.23 43.52 4.49
686 689 3.900892 CGGATAGCGGCGGTCAGT 61.901 66.667 17.55 2.52 0.00 3.41
692 695 2.261430 TAGCGGCGGTCAGTAGGAGA 62.261 60.000 17.55 0.00 0.00 3.71
695 698 1.592400 CGGCGGTCAGTAGGAGAACA 61.592 60.000 0.00 0.00 0.00 3.18
877 880 2.361230 GGCTAAAGGGGCGCTGTT 60.361 61.111 7.64 4.66 0.00 3.16
878 881 2.700773 GGCTAAAGGGGCGCTGTTG 61.701 63.158 7.64 1.17 0.00 3.33
879 882 2.700773 GCTAAAGGGGCGCTGTTGG 61.701 63.158 7.64 5.31 0.00 3.77
880 883 1.002624 CTAAAGGGGCGCTGTTGGA 60.003 57.895 7.64 0.00 0.00 3.53
881 884 1.002624 TAAAGGGGCGCTGTTGGAG 60.003 57.895 7.64 0.00 0.00 3.86
882 885 2.478335 TAAAGGGGCGCTGTTGGAGG 62.478 60.000 7.64 0.00 0.00 4.30
889 892 4.666253 GCTGTTGGAGGCAGGGCA 62.666 66.667 0.00 0.00 34.73 5.36
890 893 2.357836 CTGTTGGAGGCAGGGCAT 59.642 61.111 0.00 0.00 0.00 4.40
891 894 1.751927 CTGTTGGAGGCAGGGCATC 60.752 63.158 0.00 0.00 38.72 3.91
892 895 2.825836 GTTGGAGGCAGGGCATCG 60.826 66.667 0.00 0.00 40.46 3.84
893 896 4.802051 TTGGAGGCAGGGCATCGC 62.802 66.667 0.00 0.00 40.46 4.58
958 962 0.664767 GCGTGAGAGAACTGCGTCTT 60.665 55.000 0.00 0.00 0.00 3.01
959 963 1.056103 CGTGAGAGAACTGCGTCTTG 58.944 55.000 0.00 0.00 0.00 3.02
1051 1055 1.990563 CTCGGTTTAGCGAAATCGTGT 59.009 47.619 21.68 0.00 46.94 4.49
1052 1056 1.987770 TCGGTTTAGCGAAATCGTGTC 59.012 47.619 21.68 0.00 46.94 3.67
1053 1057 1.990563 CGGTTTAGCGAAATCGTGTCT 59.009 47.619 15.72 0.00 42.92 3.41
1054 1058 2.222508 CGGTTTAGCGAAATCGTGTCTG 60.223 50.000 15.72 0.00 42.92 3.51
1055 1059 2.093783 GGTTTAGCGAAATCGTGTCTGG 59.906 50.000 4.59 0.00 42.22 3.86
1056 1060 2.004583 TTAGCGAAATCGTGTCTGGG 57.995 50.000 4.59 0.00 42.22 4.45
1057 1061 0.892755 TAGCGAAATCGTGTCTGGGT 59.107 50.000 4.59 0.00 42.22 4.51
1058 1062 0.389948 AGCGAAATCGTGTCTGGGTC 60.390 55.000 4.59 0.00 42.22 4.46
1059 1063 0.389948 GCGAAATCGTGTCTGGGTCT 60.390 55.000 4.59 0.00 42.22 3.85
1067 1147 0.832135 GTGTCTGGGTCTCTGGGACA 60.832 60.000 10.30 0.00 46.16 4.02
1079 1159 5.453480 GGTCTCTGGGACACTATAAATGGAC 60.453 48.000 10.30 0.00 46.16 4.02
1125 1210 0.313987 CAAAGCCGGAAAACTGGTCC 59.686 55.000 5.05 0.00 0.00 4.46
1215 1300 1.076533 CCTACGCGCTACAACCACTG 61.077 60.000 5.73 0.00 0.00 3.66
1278 1363 1.726533 CGCTCCTCGGTAACCTCCTC 61.727 65.000 0.00 0.00 33.78 3.71
1426 1511 0.030638 GCAGAAAAAGAACGCCAGCA 59.969 50.000 0.00 0.00 0.00 4.41
1651 1736 4.530857 CCCCGGTCGATGTGGCTC 62.531 72.222 0.00 0.00 0.00 4.70
1686 1771 1.081906 CATGGTGAACGTGCTGTGC 60.082 57.895 0.00 0.00 0.00 4.57
1739 1824 3.371063 GGTGTCGGAGCTGACGGA 61.371 66.667 7.47 0.00 41.87 4.69
1750 1835 4.351938 TGACGGACGTGGCGGAAG 62.352 66.667 0.53 0.00 0.00 3.46
2019 2104 2.297597 GGAGTCCATCCGAGGTCTATTG 59.702 54.545 3.60 0.00 38.67 1.90
2046 2131 0.443869 GCATGCACACACGACCTTAG 59.556 55.000 14.21 0.00 0.00 2.18
2047 2132 0.443869 CATGCACACACGACCTTAGC 59.556 55.000 0.00 0.00 0.00 3.09
2058 2143 7.114953 CACACACGACCTTAGCATATGTTATAG 59.885 40.741 4.29 3.76 0.00 1.31
2097 2372 8.916628 AAACATGTTATAATTGGCCAAAGTTT 57.083 26.923 24.71 15.19 0.00 2.66
2144 2419 3.859386 GCATTATGCAACGGAAAAAGGAG 59.141 43.478 12.80 0.00 44.26 3.69
2155 2430 5.801380 ACGGAAAAAGGAGCTACAGAAATA 58.199 37.500 0.00 0.00 0.00 1.40
2196 2471 7.035004 TGCTATTATGAAATGTTTTGTCAGCC 58.965 34.615 0.00 0.00 0.00 4.85
2245 2520 4.109050 CGTGGTTGCTTTTTCTTGCTTTA 58.891 39.130 0.00 0.00 0.00 1.85
2250 2525 7.639850 GTGGTTGCTTTTTCTTGCTTTATTTTC 59.360 33.333 0.00 0.00 0.00 2.29
2251 2526 7.132213 GGTTGCTTTTTCTTGCTTTATTTTCC 58.868 34.615 0.00 0.00 0.00 3.13
2253 2528 8.397906 GTTGCTTTTTCTTGCTTTATTTTCCTT 58.602 29.630 0.00 0.00 0.00 3.36
2254 2529 8.504812 TGCTTTTTCTTGCTTTATTTTCCTTT 57.495 26.923 0.00 0.00 0.00 3.11
2256 2531 9.438291 GCTTTTTCTTGCTTTATTTTCCTTTTC 57.562 29.630 0.00 0.00 0.00 2.29
2257 2532 9.636965 CTTTTTCTTGCTTTATTTTCCTTTTCG 57.363 29.630 0.00 0.00 0.00 3.46
2258 2533 8.710835 TTTTCTTGCTTTATTTTCCTTTTCGT 57.289 26.923 0.00 0.00 0.00 3.85
2292 2583 7.615403 AGTATATAGGTCAATATGTGTGCCTG 58.385 38.462 0.00 0.00 35.98 4.85
2304 2595 3.337358 TGTGTGCCTGATCTGTGTATTG 58.663 45.455 0.00 0.00 0.00 1.90
2345 2636 0.518969 CGTCGTGCGTGTCGTATGTA 60.519 55.000 0.00 0.00 35.54 2.29
2346 2637 1.177668 GTCGTGCGTGTCGTATGTAG 58.822 55.000 0.00 0.00 31.00 2.74
2347 2638 0.798159 TCGTGCGTGTCGTATGTAGT 59.202 50.000 0.00 0.00 31.00 2.73
2348 2639 1.999024 TCGTGCGTGTCGTATGTAGTA 59.001 47.619 0.00 0.00 31.00 1.82
2349 2640 2.029606 TCGTGCGTGTCGTATGTAGTAG 59.970 50.000 0.00 0.00 31.00 2.57
2350 2641 2.222886 CGTGCGTGTCGTATGTAGTAGT 60.223 50.000 0.00 0.00 0.00 2.73
2351 2642 3.000222 CGTGCGTGTCGTATGTAGTAGTA 60.000 47.826 0.00 0.00 0.00 1.82
2352 2643 4.512657 GTGCGTGTCGTATGTAGTAGTAG 58.487 47.826 0.00 0.00 0.00 2.57
2353 2644 4.033358 GTGCGTGTCGTATGTAGTAGTAGT 59.967 45.833 0.00 0.00 0.00 2.73
2361 2652 9.987272 TGTCGTATGTAGTAGTAGTATATGTGT 57.013 33.333 4.88 0.00 0.00 3.72
2367 2658 7.700505 TGTAGTAGTAGTATATGTGTGTGCAC 58.299 38.462 10.75 10.75 45.44 4.57
2456 2747 0.823460 TGTATGTGCGCAGGAGATGA 59.177 50.000 12.22 0.00 32.04 2.92
2474 2765 9.552695 AGGAGATGATACCATACATGAGATAAA 57.447 33.333 0.00 0.00 32.09 1.40
2560 2854 6.580963 GTGAAACAATACAATTTGTGTGCA 57.419 33.333 12.30 2.33 39.68 4.57
2564 2858 6.586868 AACAATACAATTTGTGTGCAAGTG 57.413 33.333 12.30 4.02 41.89 3.16
2616 2914 9.245962 CTTATTCTTTAAGTATACCGGTGTCTG 57.754 37.037 19.93 1.26 0.00 3.51
2627 2925 6.920569 ATACCGGTGTCTGTAATTCATTTC 57.079 37.500 19.93 0.00 0.00 2.17
2698 2996 0.539669 CACTCCCACCCAAAGAACCC 60.540 60.000 0.00 0.00 0.00 4.11
2811 3110 7.598118 TGTTGAATAGTTGCCACAAATGTATTG 59.402 33.333 0.00 0.00 0.00 1.90
2917 3216 0.913205 TGCAAAACCCTCCCGCTATA 59.087 50.000 0.00 0.00 0.00 1.31
3155 3454 1.481055 GGGGGATATGCAGAAATGCCA 60.481 52.381 15.72 0.00 35.43 4.92
3160 3459 4.144297 GGATATGCAGAAATGCCAAGGTA 58.856 43.478 0.00 0.00 0.00 3.08
3223 3522 3.673543 AGGGAGATAGAGTTCTTCGGT 57.326 47.619 0.00 0.00 0.00 4.69
3226 3525 2.427453 GGAGATAGAGTTCTTCGGTGCA 59.573 50.000 0.00 0.00 0.00 4.57
3271 3570 2.427245 CGGGAAGCGGATCTGTCCT 61.427 63.158 10.25 0.00 42.73 3.85
3391 3690 5.422012 TGTAGATATGACAGAGCAGTTTGGA 59.578 40.000 0.00 0.00 0.00 3.53
3463 3762 1.821061 AAGGCCGGTCACAGTGAGAG 61.821 60.000 9.71 0.63 0.00 3.20
3495 3794 3.740115 AGTATAATGCCCGCCAACTAAG 58.260 45.455 0.00 0.00 0.00 2.18
3506 3805 3.865745 CCGCCAACTAAGTAGTTCAGATG 59.134 47.826 0.62 0.00 44.19 2.90
3517 3816 7.482169 AAGTAGTTCAGATGAGGTGACATAA 57.518 36.000 0.00 0.00 0.00 1.90
3522 3821 8.048534 AGTTCAGATGAGGTGACATAAAATTG 57.951 34.615 0.00 0.00 0.00 2.32
3582 3881 8.359642 ACACCATATCATATTAAACAATGTGCC 58.640 33.333 0.00 0.00 0.00 5.01
3597 3896 2.512705 TGTGCCACTATTTGTCATGCA 58.487 42.857 0.00 0.00 0.00 3.96
3601 3900 5.036737 GTGCCACTATTTGTCATGCATAAC 58.963 41.667 0.00 0.00 30.76 1.89
3698 3997 0.324923 ATACCCCACTACGACCAGCA 60.325 55.000 0.00 0.00 0.00 4.41
3701 4000 1.596934 CCCACTACGACCAGCATGT 59.403 57.895 0.00 0.00 0.00 3.21
3723 4022 7.213216 TGTTACAGTGTTGTGCATGATTAAT 57.787 32.000 0.00 0.00 38.23 1.40
3780 4079 9.408648 CTTAATGTGGATTAAGGAGGTTACATT 57.591 33.333 0.00 0.00 43.94 2.71
3785 4084 6.318900 GTGGATTAAGGAGGTTACATTTCCTG 59.681 42.308 3.68 0.00 40.39 3.86
3853 4152 3.545703 AGGATTAATCGAACAAGGCCTG 58.454 45.455 5.69 2.82 0.00 4.85
3870 4169 2.355756 GCCTGCATAGAGAAAATTGCGA 59.644 45.455 0.00 0.00 37.92 5.10
3965 4304 2.125512 CTGTGCCGGTGCTAGTCC 60.126 66.667 1.90 0.00 38.71 3.85
3966 4305 3.989698 CTGTGCCGGTGCTAGTCCG 62.990 68.421 17.35 17.35 46.49 4.79
3975 4314 2.325166 GCTAGTCCGAGTCGAGCG 59.675 66.667 15.64 0.00 0.00 5.03
4008 4347 1.079197 CATACAGCTGGCCGACACA 60.079 57.895 19.93 0.00 0.00 3.72
4011 4350 0.899019 TACAGCTGGCCGACACAATA 59.101 50.000 19.93 0.00 0.00 1.90
4045 4388 2.233922 CACACCTACTCCCTTCGTTCAT 59.766 50.000 0.00 0.00 0.00 2.57
4213 4558 8.040132 AGCATCTATAACCAGAGATAGCAAATC 58.960 37.037 0.00 0.00 30.87 2.17
4221 4566 3.390639 CAGAGATAGCAAATCCAGGTCCT 59.609 47.826 0.00 0.00 0.00 3.85
4226 4571 3.463048 AGCAAATCCAGGTCCTCAAAT 57.537 42.857 0.00 0.00 0.00 2.32
4237 4582 0.776810 TCCTCAAATGCCCAAGGACA 59.223 50.000 0.00 0.00 33.00 4.02
4272 4617 3.296709 GATCACTGACCGGGCACGT 62.297 63.158 5.41 6.16 38.78 4.49
4275 4620 3.681835 ACTGACCGGGCACGTCTC 61.682 66.667 5.41 1.27 38.78 3.36
4285 4630 0.951558 GGCACGTCTCATTTGTTGGT 59.048 50.000 0.00 0.00 0.00 3.67
4288 4633 3.042887 GCACGTCTCATTTGTTGGTTTC 58.957 45.455 0.00 0.00 0.00 2.78
4289 4634 3.243068 GCACGTCTCATTTGTTGGTTTCT 60.243 43.478 0.00 0.00 0.00 2.52
4293 4638 5.007332 ACGTCTCATTTGTTGGTTTCTACAC 59.993 40.000 0.00 0.00 0.00 2.90
4294 4639 5.560183 CGTCTCATTTGTTGGTTTCTACACC 60.560 44.000 0.00 0.00 37.34 4.16
4296 4641 6.708949 GTCTCATTTGTTGGTTTCTACACCTA 59.291 38.462 0.00 0.00 37.75 3.08
4297 4642 6.708949 TCTCATTTGTTGGTTTCTACACCTAC 59.291 38.462 0.00 0.00 41.45 3.18
4300 4645 3.981211 TGTTGGTTTCTACACCTACGTC 58.019 45.455 0.00 0.00 43.32 4.34
4301 4646 3.384146 TGTTGGTTTCTACACCTACGTCA 59.616 43.478 0.00 0.00 43.32 4.35
4310 4655 5.926663 TCTACACCTACGTCACTCATATCT 58.073 41.667 0.00 0.00 0.00 1.98
4318 4663 7.081349 CCTACGTCACTCATATCTGAAATCTC 58.919 42.308 0.00 0.00 0.00 2.75
4336 4681 7.871973 TGAAATCTCAAAACCATACAACCAATG 59.128 33.333 0.00 0.00 0.00 2.82
4340 4685 5.053145 TCAAAACCATACAACCAATGCAAC 58.947 37.500 0.00 0.00 0.00 4.17
4341 4686 4.679373 AAACCATACAACCAATGCAACA 57.321 36.364 0.00 0.00 0.00 3.33
4345 4690 5.016173 ACCATACAACCAATGCAACACTAT 58.984 37.500 0.00 0.00 0.00 2.12
4355 4700 8.574251 ACCAATGCAACACTATGTAAAAGATA 57.426 30.769 0.00 0.00 0.00 1.98
4374 4719 7.834881 AAGATAATCATTGGATGAAGCACAT 57.165 32.000 0.00 0.00 43.50 3.21
4376 4721 6.776116 AGATAATCATTGGATGAAGCACATGT 59.224 34.615 0.00 0.00 43.50 3.21
4387 4732 2.315925 AGCACATGTAGTTCATCGGG 57.684 50.000 0.00 0.00 34.09 5.14
4388 4733 1.555075 AGCACATGTAGTTCATCGGGT 59.445 47.619 0.00 0.00 34.09 5.28
4389 4734 2.764010 AGCACATGTAGTTCATCGGGTA 59.236 45.455 0.00 0.00 34.09 3.69
4390 4735 3.388024 AGCACATGTAGTTCATCGGGTAT 59.612 43.478 0.00 0.00 34.09 2.73
4391 4736 3.494626 GCACATGTAGTTCATCGGGTATG 59.505 47.826 0.00 0.00 34.09 2.39
4392 4737 4.693283 CACATGTAGTTCATCGGGTATGT 58.307 43.478 0.00 0.00 36.89 2.29
4393 4738 4.507756 CACATGTAGTTCATCGGGTATGTG 59.492 45.833 0.00 0.00 38.45 3.21
4394 4739 4.161565 ACATGTAGTTCATCGGGTATGTGT 59.838 41.667 0.00 0.00 36.89 3.72
4395 4740 4.118093 TGTAGTTCATCGGGTATGTGTG 57.882 45.455 0.00 0.00 36.89 3.82
4396 4741 2.691409 AGTTCATCGGGTATGTGTGG 57.309 50.000 0.00 0.00 36.89 4.17
4397 4742 1.209504 AGTTCATCGGGTATGTGTGGG 59.790 52.381 0.00 0.00 36.89 4.61
4398 4743 1.208535 GTTCATCGGGTATGTGTGGGA 59.791 52.381 0.00 0.00 36.89 4.37
4399 4744 0.828022 TCATCGGGTATGTGTGGGAC 59.172 55.000 0.00 0.00 36.89 4.46
4400 4745 0.539518 CATCGGGTATGTGTGGGACA 59.460 55.000 0.00 0.00 39.53 4.02
4401 4746 1.065782 CATCGGGTATGTGTGGGACAA 60.066 52.381 0.00 0.00 44.16 3.18
4402 4747 0.611200 TCGGGTATGTGTGGGACAAG 59.389 55.000 0.00 0.00 44.16 3.16
4403 4748 1.024579 CGGGTATGTGTGGGACAAGC 61.025 60.000 0.00 0.00 44.16 4.01
4404 4749 0.328258 GGGTATGTGTGGGACAAGCT 59.672 55.000 0.00 0.00 44.16 3.74
4405 4750 1.453155 GGTATGTGTGGGACAAGCTG 58.547 55.000 0.00 0.00 44.16 4.24
4406 4751 1.453155 GTATGTGTGGGACAAGCTGG 58.547 55.000 0.00 0.00 44.16 4.85
4407 4752 1.003118 GTATGTGTGGGACAAGCTGGA 59.997 52.381 0.00 0.00 44.16 3.86
4408 4753 0.700564 ATGTGTGGGACAAGCTGGAT 59.299 50.000 0.00 0.00 44.16 3.41
4409 4754 0.036732 TGTGTGGGACAAGCTGGATC 59.963 55.000 0.00 0.00 44.16 3.36
4410 4755 0.036732 GTGTGGGACAAGCTGGATCA 59.963 55.000 0.00 0.00 44.16 2.92
4411 4756 0.770499 TGTGGGACAAGCTGGATCAA 59.230 50.000 0.00 0.00 44.16 2.57
4412 4757 1.355381 TGTGGGACAAGCTGGATCAAT 59.645 47.619 0.00 0.00 44.16 2.57
4413 4758 2.019984 GTGGGACAAGCTGGATCAATC 58.980 52.381 0.00 0.00 44.16 2.67
4414 4759 1.064463 TGGGACAAGCTGGATCAATCC 60.064 52.381 0.00 1.86 41.39 3.01
4415 4760 3.698339 TGGGACAAGCTGGATCAATCCA 61.698 50.000 11.17 11.17 46.33 3.41
4423 4768 1.721487 GGATCAATCCAACGTGGCG 59.279 57.895 4.09 0.00 46.38 5.69
4424 4769 0.742990 GGATCAATCCAACGTGGCGA 60.743 55.000 4.09 0.00 46.38 5.54
4425 4770 1.083489 GATCAATCCAACGTGGCGAA 58.917 50.000 0.00 0.00 37.47 4.70
4426 4771 1.670811 GATCAATCCAACGTGGCGAAT 59.329 47.619 0.00 0.00 37.47 3.34
4427 4772 0.801872 TCAATCCAACGTGGCGAATG 59.198 50.000 0.00 0.00 37.47 2.67
4428 4773 0.798009 CAATCCAACGTGGCGAATGC 60.798 55.000 0.00 0.00 37.47 3.56
4429 4774 1.240641 AATCCAACGTGGCGAATGCA 61.241 50.000 0.00 0.00 45.35 3.96
4430 4775 1.922135 ATCCAACGTGGCGAATGCAC 61.922 55.000 0.00 0.00 45.35 4.57
4431 4776 2.126888 CAACGTGGCGAATGCACC 60.127 61.111 0.00 0.00 45.35 5.01
4432 4777 3.361977 AACGTGGCGAATGCACCC 61.362 61.111 0.00 0.00 45.35 4.61
4433 4778 4.634703 ACGTGGCGAATGCACCCA 62.635 61.111 0.00 0.00 45.35 4.51
4434 4779 3.361158 CGTGGCGAATGCACCCAA 61.361 61.111 0.00 0.00 45.35 4.12
4435 4780 2.568090 GTGGCGAATGCACCCAAG 59.432 61.111 0.00 0.00 45.35 3.61
4436 4781 2.115052 TGGCGAATGCACCCAAGT 59.885 55.556 0.00 0.00 45.35 3.16
4437 4782 1.971167 TGGCGAATGCACCCAAGTC 60.971 57.895 0.00 0.00 45.35 3.01
4438 4783 1.971167 GGCGAATGCACCCAAGTCA 60.971 57.895 0.00 0.00 45.35 3.41
4439 4784 1.315257 GGCGAATGCACCCAAGTCAT 61.315 55.000 0.00 0.00 45.35 3.06
4440 4785 0.099436 GCGAATGCACCCAAGTCATC 59.901 55.000 0.00 0.00 42.15 2.92
4441 4786 0.734889 CGAATGCACCCAAGTCATCC 59.265 55.000 0.00 0.00 0.00 3.51
4442 4787 1.106285 GAATGCACCCAAGTCATCCC 58.894 55.000 0.00 0.00 0.00 3.85
4443 4788 0.409092 AATGCACCCAAGTCATCCCA 59.591 50.000 0.00 0.00 0.00 4.37
4444 4789 0.632835 ATGCACCCAAGTCATCCCAT 59.367 50.000 0.00 0.00 0.00 4.00
4445 4790 1.294041 TGCACCCAAGTCATCCCATA 58.706 50.000 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 15 1.945662 CACGGCTGCACAACAAAGC 60.946 57.895 0.50 0.00 36.17 3.51
62 64 1.804372 GCTCTCAATGTCCTACTGCCG 60.804 57.143 0.00 0.00 0.00 5.69
130 133 3.054655 GGTGAGTATTTAGTGCCCAGGAA 60.055 47.826 0.00 0.00 0.00 3.36
152 155 7.308229 GGTGATCCTTTCGATTTGGATATCAAG 60.308 40.741 12.38 0.00 40.33 3.02
216 219 2.045926 GTCATGGAAGCGCCTGGT 60.046 61.111 2.29 0.00 37.63 4.00
219 222 1.377725 CCTTGTCATGGAAGCGCCT 60.378 57.895 2.29 0.00 37.63 5.52
221 224 2.486966 GCCTTGTCATGGAAGCGC 59.513 61.111 8.93 0.00 0.00 5.92
367 370 4.021925 GGAAGCACGGCAGGACCT 62.022 66.667 0.00 0.00 35.61 3.85
375 378 3.047877 GTTCACGGGGAAGCACGG 61.048 66.667 0.00 0.00 35.82 4.94
435 438 1.289066 TGGAGCTCCACGTCTTTCG 59.711 57.895 32.00 0.00 42.01 3.46
501 504 3.283684 CGAGGCTCGGATCTCGCT 61.284 66.667 28.52 0.00 44.68 4.93
612 615 1.009389 CGAGGAGCTTCACGTTGGAC 61.009 60.000 3.36 0.00 0.00 4.02
617 620 1.668101 GGATCCGAGGAGCTTCACGT 61.668 60.000 11.06 0.00 0.00 4.49
632 635 1.447314 GTGTGAACCCGGACGGATC 60.447 63.158 13.13 10.54 37.50 3.36
661 664 3.227276 CCGCTATCCGCCTCTGGT 61.227 66.667 0.00 0.00 35.03 4.00
686 689 2.050350 CCGCGACCCTGTTCTCCTA 61.050 63.158 8.23 0.00 0.00 2.94
749 752 4.974438 ACCCCGTGCTCTTCCCCA 62.974 66.667 0.00 0.00 0.00 4.96
750 753 3.647771 AACCCCGTGCTCTTCCCC 61.648 66.667 0.00 0.00 0.00 4.81
756 759 3.134127 GGATGCAACCCCGTGCTC 61.134 66.667 0.47 0.00 45.17 4.26
860 863 2.361230 AACAGCGCCCCTTTAGCC 60.361 61.111 2.29 0.00 0.00 3.93
876 879 4.802051 GCGATGCCCTGCCTCCAA 62.802 66.667 0.00 0.00 0.00 3.53
887 890 2.280797 TTATCCCCAGCGCGATGC 60.281 61.111 20.85 0.00 46.98 3.91
888 891 1.669115 CCTTATCCCCAGCGCGATG 60.669 63.158 19.16 19.16 0.00 3.84
889 892 2.743718 CCTTATCCCCAGCGCGAT 59.256 61.111 12.10 0.00 0.00 4.58
890 893 4.235762 GCCTTATCCCCAGCGCGA 62.236 66.667 12.10 0.00 0.00 5.87
895 898 4.626081 CCCGCGCCTTATCCCCAG 62.626 72.222 0.00 0.00 0.00 4.45
913 916 2.130073 GACAAAACCCAGAGCCACGC 62.130 60.000 0.00 0.00 0.00 5.34
914 917 1.841663 CGACAAAACCCAGAGCCACG 61.842 60.000 0.00 0.00 0.00 4.94
920 923 1.673626 GCGTATCCGACAAAACCCAGA 60.674 52.381 0.00 0.00 35.63 3.86
924 927 0.094046 CACGCGTATCCGACAAAACC 59.906 55.000 13.44 0.00 35.63 3.27
954 958 2.444700 TTTCCTCGTCGGGGCAAGAC 62.445 60.000 6.17 2.06 35.41 3.01
958 962 3.235481 TGTTTCCTCGTCGGGGCA 61.235 61.111 6.17 0.00 0.00 5.36
959 963 2.726822 AAGTGTTTCCTCGTCGGGGC 62.727 60.000 6.17 0.00 0.00 5.80
967 971 1.869690 GAGCGCCAAGTGTTTCCTC 59.130 57.895 2.29 0.00 0.00 3.71
991 995 2.179547 TTGCCAGCATATCGCACGG 61.180 57.895 0.00 0.00 46.13 4.94
1051 1055 1.081481 TAGTGTCCCAGAGACCCAGA 58.919 55.000 0.00 0.00 45.68 3.86
1052 1056 2.166907 ATAGTGTCCCAGAGACCCAG 57.833 55.000 0.00 0.00 45.68 4.45
1053 1057 3.769189 TTATAGTGTCCCAGAGACCCA 57.231 47.619 0.00 0.00 45.68 4.51
1054 1058 4.202367 CCATTTATAGTGTCCCAGAGACCC 60.202 50.000 0.00 0.00 45.68 4.46
1055 1059 4.654262 TCCATTTATAGTGTCCCAGAGACC 59.346 45.833 0.00 0.00 45.68 3.85
1056 1060 5.453480 GGTCCATTTATAGTGTCCCAGAGAC 60.453 48.000 0.00 0.00 46.51 3.36
1057 1061 4.654262 GGTCCATTTATAGTGTCCCAGAGA 59.346 45.833 0.00 0.00 0.00 3.10
1058 1062 4.501571 CGGTCCATTTATAGTGTCCCAGAG 60.502 50.000 0.00 0.00 0.00 3.35
1059 1063 3.386726 CGGTCCATTTATAGTGTCCCAGA 59.613 47.826 0.00 0.00 0.00 3.86
1067 1147 3.381335 ACCTCACCGGTCCATTTATAGT 58.619 45.455 2.59 0.00 44.93 2.12
1079 1159 4.379243 AGAGCGCAACCTCACCGG 62.379 66.667 11.47 0.00 34.26 5.28
1105 1190 0.318699 GACCAGTTTTCCGGCTTTGC 60.319 55.000 0.00 0.00 0.00 3.68
1125 1210 2.176273 CATCTCTTGCTTCCGGGCG 61.176 63.158 0.00 0.00 34.52 6.13
1261 1346 0.107312 TCGAGGAGGTTACCGAGGAG 60.107 60.000 0.00 0.00 34.73 3.69
1686 1771 3.774959 CTCCGAGAACATCCCGCGG 62.775 68.421 21.04 21.04 46.07 6.46
1970 2055 1.753463 ACCCATCCGTCCTCGTCTC 60.753 63.158 0.00 0.00 35.01 3.36
1977 2062 0.463833 GGTTCATCACCCATCCGTCC 60.464 60.000 0.00 0.00 40.19 4.79
1996 2081 0.396417 AGACCTCGGATGGACTCCTG 60.396 60.000 0.00 0.00 42.47 3.86
2019 2104 1.202065 CGTGTGTGCATGCTTACCATC 60.202 52.381 20.33 9.61 29.71 3.51
2084 2359 7.236640 TCCTTTTAGGATAAAACTTTGGCCAAT 59.763 33.333 21.26 6.36 40.06 3.16
2097 2372 9.120538 GCATGTATTTGACTCCTTTTAGGATAA 57.879 33.333 0.00 0.00 44.81 1.75
2175 2450 6.014327 ACTGGGCTGACAAAACATTTCATAAT 60.014 34.615 0.00 0.00 0.00 1.28
2211 2486 0.457851 CAACCACGCACAAAAAGGGA 59.542 50.000 0.00 0.00 0.00 4.20
2265 2540 8.750298 AGGCACACATATTGACCTATATACTAC 58.250 37.037 0.00 0.00 34.66 2.73
2267 2542 7.454694 TCAGGCACACATATTGACCTATATACT 59.545 37.037 0.00 0.00 34.66 2.12
2268 2543 7.611770 TCAGGCACACATATTGACCTATATAC 58.388 38.462 0.00 0.00 34.66 1.47
2292 2583 6.072508 ACAAATCCACACACAATACACAGATC 60.073 38.462 0.00 0.00 0.00 2.75
2304 2595 1.838913 GTGCACACAAATCCACACAC 58.161 50.000 13.17 0.00 0.00 3.82
2340 2631 9.563748 TGCACACACATATACTACTACTACATA 57.436 33.333 0.00 0.00 0.00 2.29
2474 2765 7.417116 GCAGTGTGATTTCCATAATGATTCCTT 60.417 37.037 0.00 0.00 34.53 3.36
2560 2854 7.961325 AAACTCAAAACAAATGACAACACTT 57.039 28.000 0.00 0.00 0.00 3.16
2609 2907 8.244113 CCCTAAAAGAAATGAATTACAGACACC 58.756 37.037 0.00 0.00 0.00 4.16
2610 2908 9.010029 TCCCTAAAAGAAATGAATTACAGACAC 57.990 33.333 0.00 0.00 0.00 3.67
2777 3076 3.792956 GGCAACTATTCAACATGCGATTG 59.207 43.478 0.00 0.00 37.88 2.67
2779 3078 3.016031 TGGCAACTATTCAACATGCGAT 58.984 40.909 0.00 0.00 37.88 4.58
2966 3265 1.070445 CGGACTCCTCCATCCATGC 59.930 63.158 0.00 0.00 36.12 4.06
3070 3369 1.519751 CTATCTCCACCGCCTCCTCG 61.520 65.000 0.00 0.00 0.00 4.63
3223 3522 1.399440 GCGATCAGCTCAAAATCTGCA 59.601 47.619 0.00 0.00 44.04 4.41
3271 3570 3.767806 CTCGAGAGCTGCAGCCCA 61.768 66.667 34.39 13.21 43.38 5.36
3366 3665 5.752472 CCAAACTGCTCTGTCATATCTACAG 59.248 44.000 8.00 8.00 44.66 2.74
3391 3690 0.538057 CAGCCATGGACAACACCAGT 60.538 55.000 18.40 0.00 43.49 4.00
3403 3702 2.586079 CGTAGCGGGACAGCCATG 60.586 66.667 0.00 0.00 38.01 3.66
3463 3762 7.713507 TGGCGGGCATTATACTTTATATGATAC 59.286 37.037 0.00 0.00 0.00 2.24
3495 3794 8.723942 ATTTTATGTCACCTCATCTGAACTAC 57.276 34.615 0.00 0.00 0.00 2.73
3506 3805 9.912634 TTTCTTCATTCAATTTTATGTCACCTC 57.087 29.630 0.00 0.00 0.00 3.85
3517 3816 9.924650 CTCAATCCTTCTTTCTTCATTCAATTT 57.075 29.630 0.00 0.00 0.00 1.82
3522 3821 9.388506 TGATACTCAATCCTTCTTTCTTCATTC 57.611 33.333 0.00 0.00 33.22 2.67
3557 3856 8.358895 TGGCACATTGTTTAATATGATATGGTG 58.641 33.333 0.00 0.00 0.00 4.17
3668 3967 6.016024 GTCGTAGTGGGGTATTGTATGATACA 60.016 42.308 0.23 0.23 34.82 2.29
3678 3977 0.828677 GCTGGTCGTAGTGGGGTATT 59.171 55.000 0.00 0.00 0.00 1.89
3698 3997 5.710513 AATCATGCACAACACTGTAACAT 57.289 34.783 0.00 0.00 33.79 2.71
3728 4027 6.656902 TCATTCAATCAACTCCTAGCTGAAT 58.343 36.000 0.00 0.00 33.47 2.57
3735 4034 8.049117 ACATTAAGCTCATTCAATCAACTCCTA 58.951 33.333 0.00 0.00 0.00 2.94
3738 4037 6.971184 CCACATTAAGCTCATTCAATCAACTC 59.029 38.462 0.00 0.00 0.00 3.01
3780 4079 6.068010 TGAGAGGAATTTTAACTTGCAGGAA 58.932 36.000 1.40 0.00 0.00 3.36
3785 4084 7.122799 AGGGTATTGAGAGGAATTTTAACTTGC 59.877 37.037 0.00 0.00 0.00 4.01
3853 4152 2.851008 GCGGTCGCAATTTTCTCTATGC 60.851 50.000 10.67 0.00 41.49 3.14
3870 4169 1.001760 ACTGATGGGTAGAGGCGGT 59.998 57.895 0.00 0.00 0.00 5.68
3975 4314 1.084289 GTATGAACTTGGTCGTGCCC 58.916 55.000 0.00 0.00 36.04 5.36
3986 4325 0.108138 GTCGGCCAGCTGTATGAACT 60.108 55.000 13.81 0.00 0.00 3.01
4008 4347 2.617021 GGTGTGAATGGGGTGTCGTATT 60.617 50.000 0.00 0.00 0.00 1.89
4011 4350 1.072505 GGTGTGAATGGGGTGTCGT 59.927 57.895 0.00 0.00 0.00 4.34
4168 4513 7.961351 AGATGCTCTAGTGCAATACTCTATTT 58.039 34.615 22.16 2.97 46.61 1.40
4172 4517 8.519526 GTTATAGATGCTCTAGTGCAATACTCT 58.480 37.037 22.16 20.38 46.61 3.24
4178 4523 5.598417 TCTGGTTATAGATGCTCTAGTGCAA 59.402 40.000 22.16 7.76 46.61 4.08
4183 4528 7.555914 TGCTATCTCTGGTTATAGATGCTCTAG 59.444 40.741 0.00 0.00 34.36 2.43
4195 4540 4.721776 ACCTGGATTTGCTATCTCTGGTTA 59.278 41.667 0.00 0.00 0.00 2.85
4197 4542 3.118531 ACCTGGATTTGCTATCTCTGGT 58.881 45.455 0.00 10.41 0.00 4.00
4198 4543 3.495806 GGACCTGGATTTGCTATCTCTGG 60.496 52.174 0.00 0.01 0.00 3.86
4213 4558 0.251742 TTGGGCATTTGAGGACCTGG 60.252 55.000 0.00 0.00 0.00 4.45
4221 4566 1.523154 GCGTGTCCTTGGGCATTTGA 61.523 55.000 0.00 0.00 0.00 2.69
4249 4594 3.822192 CCGGTCAGTGATCGCGGA 61.822 66.667 20.50 4.91 34.53 5.54
4254 4599 2.509336 CGTGCCCGGTCAGTGATC 60.509 66.667 0.00 0.00 0.00 2.92
4255 4600 3.296709 GACGTGCCCGGTCAGTGAT 62.297 63.158 0.00 0.00 38.78 3.06
4256 4601 3.986006 GACGTGCCCGGTCAGTGA 61.986 66.667 0.00 0.00 38.78 3.41
4272 4617 5.690865 AGGTGTAGAAACCAACAAATGAGA 58.309 37.500 0.00 0.00 43.20 3.27
4275 4620 5.237779 ACGTAGGTGTAGAAACCAACAAATG 59.762 40.000 0.00 0.00 43.20 2.32
4285 4630 6.827251 AGATATGAGTGACGTAGGTGTAGAAA 59.173 38.462 0.00 0.00 0.00 2.52
4288 4633 5.758784 TCAGATATGAGTGACGTAGGTGTAG 59.241 44.000 0.00 0.00 0.00 2.74
4289 4634 5.677567 TCAGATATGAGTGACGTAGGTGTA 58.322 41.667 0.00 0.00 0.00 2.90
4293 4638 6.976088 AGATTTCAGATATGAGTGACGTAGG 58.024 40.000 0.00 0.00 0.00 3.18
4294 4639 7.643579 TGAGATTTCAGATATGAGTGACGTAG 58.356 38.462 0.00 0.00 0.00 3.51
4296 4641 6.456795 TGAGATTTCAGATATGAGTGACGT 57.543 37.500 0.00 0.00 0.00 4.34
4297 4642 7.761651 TTTGAGATTTCAGATATGAGTGACG 57.238 36.000 0.00 0.00 34.15 4.35
4300 4645 8.272545 TGGTTTTGAGATTTCAGATATGAGTG 57.727 34.615 0.00 0.00 34.15 3.51
4310 4655 6.968263 TGGTTGTATGGTTTTGAGATTTCA 57.032 33.333 0.00 0.00 0.00 2.69
4318 4663 4.813161 TGTTGCATTGGTTGTATGGTTTTG 59.187 37.500 0.00 0.00 0.00 2.44
4345 4690 9.187996 TGCTTCATCCAATGATTATCTTTTACA 57.812 29.630 0.00 0.00 39.39 2.41
4355 4700 5.889853 ACTACATGTGCTTCATCCAATGATT 59.110 36.000 9.11 0.00 39.39 2.57
4361 4706 4.284829 TGAACTACATGTGCTTCATCCA 57.715 40.909 9.11 0.00 34.09 3.41
4365 4710 3.261580 CCGATGAACTACATGTGCTTCA 58.738 45.455 17.56 17.56 39.56 3.02
4366 4711 2.609459 CCCGATGAACTACATGTGCTTC 59.391 50.000 9.11 9.28 39.56 3.86
4367 4712 2.027192 ACCCGATGAACTACATGTGCTT 60.027 45.455 9.11 0.00 39.56 3.91
4369 4714 2.024176 ACCCGATGAACTACATGTGC 57.976 50.000 9.11 0.00 39.56 4.57
4374 4719 3.118920 CCACACATACCCGATGAACTACA 60.119 47.826 0.00 0.00 39.06 2.74
4376 4721 2.432874 CCCACACATACCCGATGAACTA 59.567 50.000 0.00 0.00 39.06 2.24
4384 4729 1.024579 GCTTGTCCCACACATACCCG 61.025 60.000 0.00 0.00 33.90 5.28
4387 4732 1.003118 TCCAGCTTGTCCCACACATAC 59.997 52.381 0.00 0.00 33.90 2.39
4388 4733 1.357137 TCCAGCTTGTCCCACACATA 58.643 50.000 0.00 0.00 33.90 2.29
4389 4734 0.700564 ATCCAGCTTGTCCCACACAT 59.299 50.000 0.00 0.00 33.90 3.21
4390 4735 0.036732 GATCCAGCTTGTCCCACACA 59.963 55.000 0.00 0.00 0.00 3.72
4391 4736 0.036732 TGATCCAGCTTGTCCCACAC 59.963 55.000 0.00 0.00 0.00 3.82
4392 4737 0.770499 TTGATCCAGCTTGTCCCACA 59.230 50.000 0.00 0.00 0.00 4.17
4393 4738 2.019984 GATTGATCCAGCTTGTCCCAC 58.980 52.381 0.00 0.00 0.00 4.61
4394 4739 1.064463 GGATTGATCCAGCTTGTCCCA 60.064 52.381 5.14 0.00 46.38 4.37
4395 4740 1.685148 GGATTGATCCAGCTTGTCCC 58.315 55.000 5.14 0.00 46.38 4.46
4406 4751 1.083489 TTCGCCACGTTGGATTGATC 58.917 50.000 8.04 0.00 40.96 2.92
4407 4752 1.401552 CATTCGCCACGTTGGATTGAT 59.598 47.619 8.04 0.00 40.96 2.57
4408 4753 0.801872 CATTCGCCACGTTGGATTGA 59.198 50.000 8.04 0.65 40.96 2.57
4409 4754 0.798009 GCATTCGCCACGTTGGATTG 60.798 55.000 8.04 3.75 40.96 2.67
4410 4755 1.240641 TGCATTCGCCACGTTGGATT 61.241 50.000 8.04 0.00 40.96 3.01
4411 4756 1.673993 TGCATTCGCCACGTTGGAT 60.674 52.632 8.04 0.00 40.96 3.41
4412 4757 2.281139 TGCATTCGCCACGTTGGA 60.281 55.556 8.04 0.00 40.96 3.53
4413 4758 2.126888 GTGCATTCGCCACGTTGG 60.127 61.111 0.00 0.00 41.55 3.77
4414 4759 2.126888 GGTGCATTCGCCACGTTG 60.127 61.111 0.00 0.00 42.42 4.10
4415 4760 3.361977 GGGTGCATTCGCCACGTT 61.362 61.111 0.00 0.00 44.64 3.99
4416 4761 4.634703 TGGGTGCATTCGCCACGT 62.635 61.111 0.00 0.00 44.64 4.49
4417 4762 3.326889 CTTGGGTGCATTCGCCACG 62.327 63.158 0.00 0.00 44.64 4.94
4418 4763 2.200170 GACTTGGGTGCATTCGCCAC 62.200 60.000 0.00 0.00 44.64 5.01
4419 4764 1.971167 GACTTGGGTGCATTCGCCA 60.971 57.895 0.00 0.00 44.64 5.69
4420 4765 1.315257 ATGACTTGGGTGCATTCGCC 61.315 55.000 0.00 0.00 42.13 5.54
4421 4766 0.099436 GATGACTTGGGTGCATTCGC 59.901 55.000 0.00 0.00 39.24 4.70
4422 4767 0.734889 GGATGACTTGGGTGCATTCG 59.265 55.000 0.00 0.00 0.00 3.34
4423 4768 1.106285 GGGATGACTTGGGTGCATTC 58.894 55.000 0.00 0.00 0.00 2.67
4424 4769 0.409092 TGGGATGACTTGGGTGCATT 59.591 50.000 0.00 0.00 0.00 3.56
4425 4770 0.632835 ATGGGATGACTTGGGTGCAT 59.367 50.000 0.00 0.00 0.00 3.96
4426 4771 1.294041 TATGGGATGACTTGGGTGCA 58.706 50.000 0.00 0.00 0.00 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.