>input_sequence_32710
--------------------------------------------------------------------------------
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-------------------------------------------ATGCTGGCAACGAGCGGTCGAGGCGCGGACGCTCGGT
TTAGCGAAATCGTGTCTGGGTCT---------------------------------------------------------
-------------------CTGGGACACTATAAATGGACCGGTGAGGTTGCGCTC-----TCTGTCGCAGCAAAGCCGGA
AAACTGGTCCGCCCGGAAGCAAGAGATGGCTGACTTGTCCCTCGTGTGCGCGGCATCGCTCCCACTCACTCTGCTCGCGG
CCTACGCGCTACAACCACTGGCCGACGCGCGCCGACGCCTCCCGCCCGGCCCCAGGCCACTCCCGCTCCTCGGTAACCTC
CTCGACATCGGCGAGCACCCTCACCGTTCCTTCGCCAGCCTCGCCGACATCCACGGCCCGCTCATGTTCGTCCGCCTCGG
CACTGTCCCAGCCGTCGTGGCCACCTCGCCGGAGGCCGCCCGCGAGGTCCTGCAGAAAAAGAACGCCAGCATGGCCGCTC
GCCGTGGCCTGGACGCCTGGCGCGTCATGGACCACGACGCCAACTCCATGGTCGCGCTCCCGCCGCGCGGCAAGTGGCGC
GCCTTCAGGCAGCACTCCAGGGCCGCGCTCCTCGGCCCCCGGCCGCTCGACGAGCACCGGGCGGTGCGGGAGGAGGAGGC
GCGCGAGCTGGTGCGGCGCTTGTCCGCGGCCGGAGGCGCCCCGGTCGATGTGGCTCGCGAGGCGTTCGTGGCCATGGTGA
ACGTGCTGTGCCGCGGGATGTTCTCGGAGAAGCTAGATCCGGCCGTGGTGTCGGAGCTGACGGACGTGGCGGAAGAGGCG
GCCGTGCTGTCCGGCCTGCCCAACGTGTCTGATTTCTTCCCGGCGCTCGCGGCCCTCGACCTGCAGGGTATCCGGCGCAA
GGCGGGGAAGGTGCTCGCGTGGCTGTATACGCTCATCGACGAGCAGATCGAGCGGCGGAAGCTCAGCCGGGCGGACGGCG
ATGCGCGCAGGAACGATCTGTTGGATGTGTTGCTTGACATGGACGGCGACGTGCGAGACGAGGACGGATGGGTGATGAAC
CAGGAGTCCATCCGAGGTCTATTGATGGTAAGCATGCACACACGACCTTAGCATATGTTATAGTT---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------TCTCTCTAAAAAAACATGTTATAATTGGCCAAAGTTTTATCCTAAAAGGAGTCAAATACATGCAT
TATGCAACGGAAAAAGGAGCTACAGAAATATTATTTTATCGATTTTGCTATTATGAAATGTTTTGTCAGCCCAGTCACTC
TTTTTTCCCTTTTTGTGCGTGGTTGCTTTTTCTTGCTTTATTTTCCTTTTCGTTTTTATGTAG----------------T
ATATAGGTCAATATGTGTGCCTGATCTGTGTATTGTGTGTGGATTTGTGTGCACGGCGTCGTGCGTGTCGTATGTAGTAG
TAGTATATGTGTGTGCACGCACGTGTGCGTATGCACGTTCTTTTTTTTTCCGGCGAGGCGTATGTTTGTTCCTGTACGTG
TGGCTAGTGTATGTGCGCAGGAGATGATACCATACATGAGATAAAAGGAA---TCATTATGGAAATCACACTGCTGTCCG
AATATACACAACTATGTGTGCTTGCATACTGTGAAACAATACAATTTGTGTGCAAGTGTTGTCATTTGTTTTGAGTTT--
--TTTTCCTTATTCTTTAAGTATACCGGTGTCTGTAATTCATTTCTTTTAGGGAGTCTATAATTCATTATTCATTATAAC
TCATGTTTTCTACCCCCACTCCCACCCAAAGAACCCCTCATGTTTTCTATTTAGTTTTAGTTTTTTACATTATATTATAT
GTTTTGTTTTAAAAAC-AGTTGACATGAAAAAATTCAATCGCATGTTGAATAGTTGCCACAAATGTATTGATCTCATGTA
TGCATGCATTTTCAGGAATTACTCCTAGGCGCAACATCAGTCCCCACCACAATCGAGTGGGCGATGTCGGAGCTATTGCA
AAACCCTCCCGCTATACACAAACTCCAAGCGGAGCTCAGGAACGTCCTCGGCACCCGACCATGCGCATGGATGGAGGAGT
CCGACACCGGCAGCCTCCCATATCTCCAAGCCGTCGTCAAAGAAACACTACGGCTCCATCCCCCGGTGCCATTCGCCACT
GGGCTAGCCGAGGAGGCGGTGGAGATAGAAGGCTACAACGTCCCTAAGGGCACGACTGCCCTGGTGAACATCTGGGGGAT
ATGCAGAAATGCCAAGGTATGGGATGAGCCCAACAGGTTCTTGCCGGAAAGGTTCCTGCATAGGGAGATAGAGTTCTTCG
GTGCAGATTTTGAGCTGATCGCATTCAGCGCCGGGAAGCGGATCTGTCCTGGGCTGCAGCTCTCGAGTAAGATGGTGCCA
CTTATACTCGGCTCAATGCTCTATCACTTTGATTGGACATTGCCGGGAGAAGAAGATGCTGCTCCTGTAGATATGACAGA
GCAGTTTGGACTGGTGTTGTCCATGGCTGTCCCGCTACGCGTTGTACCTAAGAAAATATTGTAA----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------
>chr1A_1_TraesCS1A01G076700
ACCAAGAC-TGAATGCTTTGTTGTGCAGCCGTGCAGAAATTATAATCAACTAACCTAAAGCGTCGGCAGTAGGACATTGA
GAGCCGCAAAGCACACTGAAATA-TTTTATTAGCATTCTGGCGAGCACCATGTTCCTGGGCACTAAATACTCACCTTGAT
ATCCAAATCGAAAGGATCACCGTTATTCCTGCTCTGTCTGATTTGATAATGCACACACACCAGGCGCTTCCATGACAAGG
CCTCCTCCGGCATGCACCTGACCATGTGGTCGCCGCGAAACAGCGGAGGCGGCAGGACCTTGAGGCTCGCCTCGGGGCAC
ATCTGCACGAAGTGAGCACCGGGAAGCAGCAACGTCACGGCCACCCTGAAGGTCCTGCCGTGCTTCCCCGTGAACCCAGA
AGCCTCCACATGAGCGGGCGCCCTGGAGAAGACCTCCCGAAAGACGTGGAGCTCCATGAGCGGTCTGTCCTCGCCGAAGA
TGAAATGGATGGTGTCGAGACGGAGCGAGATCCGAGCCTCGCGGCTGTGGCATGAGGGGTGGCGGCGCAGGACTCATCGG
CGTCGGCAAGGCGTCTAGATGGCGGAGTTCCACAGGAAGACGTGGGACGGGCGGGTCCAACGTGAAGCTCCTCGGATCCG
TCCGGGTTCACACGCGGTGGCGCACCAGAGGCGGATAGCGGCGGTCAGTAGGAGAACAGGGTCGCGGGCGACGTGAGGGG
GAGGAGGACCTCGGATGGGTGGGGTCGCCGGTGGGGAAGAGCACGGGGTTGCATCCGGCTGTGTAGGTGCAGCGGCAGAC
GCGCTAGAGGGTGGGGCGGCAGCTGAAGGCGCGCTGAGCGGCGAGGGTCCGACGGCGGCGGCGGCTAAAGGGGCGCTGTT
GGAGGCAGGGCATCGCGCTGGGGATAAGGCGCGGGGCGTGGCTCTGGGTTTTGTCGGATA-CGCGTGAGAGAACTGCGTC
TTGCCCCGACGAGGAAACACTTGGCGCTCGTGGGCCGTGCGATATGCTGGCAACGAGCGGTCGAGGCGCGGACGCTCGGT
TTAGCGAAATCGTGTCTGGGTCT---------------------------------------------------------
-------------------CTGGGACACTATAAATGGACCGGTGAGGTTGCGCTC-----TCTGTCGCAGCAAAGCCGGA
AAACTGGTCCGCCCGGAAGCAAGAGATGGCTGACTTGTCCCTCGTGTGCGCGGCATCGCTCCCACTCACTCTGCTCGCGG
CCTACGCGCTACAACCACTGGCCGACGCGCGCCGACGCCTCCCGCCCGGCCCCAGGCCACTCCCGCTCCTCGGTAACCTC
CTCGACATCGGCGAGCACCCTCACCGTTCCTTCGCCAGCCTCGCCGACATCCACGGCCCGCTCATGTTCGTCCGCCTCGG
CACTGTCCCAGCCGTCGTGGCCACCTCGCCGGAGGCCGCCCGCGAGGTCCTGCAGAAAAAGAACGCCAGCATGGCCGCTC
GCCGTGGCCTGGACGCCTGGCGCGTCATGGACCACGACGCCAACTCCATGGTCGCGCTCCCGCCGCGCGGCAAGTGGCGC
GCCTTCAGGCAGCACTCCAGGGCCGCGCTCCTCGGCCCCCGGCCGCTCGACGAGCACCGGGCGGTGCGGGAGGAGGAGGC
GCGCGAGCTGGTGCGGCGCTTGTCCGCGGCCGGAGGCGCCCCGGTCGATGTGGCTCGCGAGGCGTTCGTGGCCATGGTGA
ACGTGCTGTGCCGCGGGATGTTCTCGGAGAAGCTAGATCCGGCCGTGGTGTCGGAGCTGACGGACGTGGCGGAAGAGGCG
GCCGTGCTGTCCGGCCTGCCCAACGTGTCTGATTTCTTCCCGGCGCTCGCGGCCCTCGACCTGCAGGGTATCCGGCGCAA
GGCGGGGAAGGTGCTCGCGTGGCTGTATACGCTCATCGACGAGCAGATCGAGCGGCGGAAGCTCAGCCGGGCGGACGGCG
ATGCGCGCAGGAACGATCTGTTGGATGTGTTGCTTGACATGGACGGCGACGTGCGAGACGAGGACGGATGGGTGATGAAC
CAGGAGTCCATCCGAGGTCTATTGATGGTAAGCATGCACACACGACCTTAGCATATGTTATAGTT---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------TCTCTCTAAAAAAACATGTTATAATTGGCCAAAGTTTTATCCTAAAAGGAGTCAAATACATGCAT
TATGCAACGGAAAAAGGAGCTACAGAAATATTATTTTATCGATTTTGCTATTATGAAATGTTTTGTCAGCCCAGTCACTC
TTTTTTCCCTTTTTGTGCGTGGTTGCTTTTTCTTGCTTTATTTTCCTTTTCGTTTTTATGTAG----------------T
ATATAGGTCAATATGTGTGCCTGATCTGTGTATTGTGTGTGGATTTGTGTGCACGGCGTCGTGCGTGTCGTATGTAGTAG
TAGTATATGTGTGTGCACGCACGTGTGCGTATGCACGTTCTTTTTTTTTCCGGCGAGGCGTATGTTTGTTCCTGTACGTG
TGGCTAGTGTATGTGCGCAGGAGATGATACCATACATGAGATAAAAGGAA---TCATTATGGAAATCACACTGCTGTCCG
AATATACACAACTATGTGTGCTTGCATACTGTGAAACAATACAATTTGTGTGCAAGTGTTGTCATTTGTTTTGAGTTT--
--TTTTCCTTATTCTTTAAGTATACCGGTGTCTGTAATTCATTTCTTTTAGGGAGTCTATAATTCATTATTCATTATAAC
TCATGTTTTCTACCCCCACTCCCACCCAAAGAACCCCTCATGTTTTCTATTTAGTTTTAGTTTTTTACATTATATTATAT
GTTTTGTTTTAAAAAC-AGTTGACATGAAAAAATTCAATCGCATGTTGAATAGTTGCCACAAATGTATTGATCTCATGTA
TGCATGCATTTTCAGGAATTACTCCTAGGCGCAACATCAGTCCCCACCACAATCGAGTGGGCGATGTCGGAGCTATTGCA
AAACCCTCCCGCTATACACAAACTCCAAGCGGAGCTCAGGAACGTCCTCGGCACCCGACCATGCGCATGGATGGAGGAGT
CCGACACCGGCAGCCTCCCATATCTCCAAGCCGTCGTCAAAGAAACACTACGGCTCCATCCCCCGGTGCCATTCGCCACT
GGGCTAGCCGAGGAGGCGGTGGAGATAGAAGGCTACAACGTCCCTAAGGGCACGACTGCCCTGGTGAACATCTGGGGGAT
ATGCAGAAATGCCAAGGTATGGGATGAGCCCAACAGGTTCTTGCCGGAAAGGTTCCTGCATAGGGAGATAGAGTTCTTCG
GTGCAGATTTTGAGCTGATCGCATTCAGCGCCGGGAAGCGGATCTGTCCTGGGCTGCAGCTCTCGAGTAAGATGGTGCCA
CTTATACTCGGCTCAATGCTCTATCACTTTGATTGGACATTGCCGGGAGAAGAAGATGCTGCTCCTGTAGATATGACAGA
GCAGTTTGGACTGGTGTTGTCCATGGCTGTCCCGCTACGCGTTGTACCTAAGAAAATATTGTAAGGCCGGTCACAGTGAG
AGTATCATATAAAGTATAATGCCCGCCAACTAAGTAGTTCAGATGAGGTGACATAAAATTGAATGAAGAAAGAAGGATTG
AGTATCATAATATGACACCATATCATATTAAACAATGTGCCACTATTTGTCATGCATAACAATAAATAAGTTTACCTACA
ATATCATTCTATGATACTATGTAGTATGGAGATAGTATCATGAACTTGTATCATACAATACCCCACTACGACCAGCATGT
TACAGTGTTGTGCATGATTAATTAATATTCAGCTAGGAGTTGATTGAATGAGCTTAATGTGGATTAAGGAGGTTACATTT
CCTGCAAGTTAAAATTCCTCTCAATACCCTCTAATCCTCTTGAGTTGATTAGGATTAATCGAACAAGGCCTGCATAGAGA
AAATTGCGACCGCCTCTACCCATCAGTGGTGGCGGAAGACTATG------------------------------------
----TGTGAGCGGCTTGCATTCGGAACACGGCTCAACAGCGCCATCCTGTGCCGGTGCTAGTCCGAGTCGAGCGGGCACG
ACCAAGTTCATACAGCTGGCCGACACAATACGACACC----CCATTCACACCTACTCCCTTCGTTCATAAATATATGTAC
TAACTG-TTAATAAATCAAATGTATATAAATACATTTTAGTGTATTTATTCATTTATTTTAAAATGTATATAGTTTATAT
TAAAAT-TGTAAAACATCTTATATTTGTAAACAAATAGAGTATTGCACTAGAGCATCTATAACCAGAGATAGCAAATCCA
GGTCCTCAAATGCCCAAGGACACGCCGGGCGCGTCCGCGATCACTGACCGGGCACGTCTCATTTGTTGGTTTCTACACCT
ACGTCACTCATATCTGAAATCTCAAAACCATACAACCAATGCAACACTATGTAAAAGATAATCATTGGATGAAGCACATG
TAGTTCATCGGGTATGTGTGGGACAAGCTGGATCAATCCAACGTGGCGAATGCACCCAAGTCATCCCATA
>chr1D_1
ACCAAGATTTGAATTCTTGGTTGTGCCGCCGTGCAGGAATTATAATCAACTAACCTAAAGCCTTGGCAGTAGGACATTGA
GAGCCGCAAAGCACACTGAAAATCTTTTATTAGCATTCGGGTGAGCACCATGCTCCTGGGCACTAAATACTCACGTTGAT
ATCCAAATCGAAAGGATCACCTCTG-------------TGATTTGATAATGCACACACGCCTGACGCTTCCATGACAAGG
CCTCCTCCGGCATGCACCTGACCATGTGGTCGCCGCGAAACAGCGGAGGCGGCTAGACCTTGAGGCTCGCCTCCGGGCAC
ATCTGTACGAAGTGAGCACCGGGAAGCAGCAACATCACGACCACCCCGA-A---------TGCTTCCCCGTGAACCCAGA
AGCCTCCACCAGTGCGGGCGCCCTGGAGAAGACCTCCTGGAAGACGCGGAGCTCCATGAGCGGCCAGTCCTCGCCGAAGA
TGAAATGGATGGTGTTGAGACGGGGCGAGATCCGAGCCTCGCGGCTGTGGCACGAGGGGTGGCAGCGCAGGACTCACCGG
CGTCGGCAAGGCGTCTAGACGGCGGAGCTCCACAGGAAGCCGTGGGATGGGCGGATCCAGCGTGAAGCTCCTCGAATCGG
TTCGGGTTCCCGCACGGCGGCGCGCCAGAGACGGATAGCGGCGGTCAGCAGGAGGACGGGGTCGCGGGCGACGTGAGGGG
GAGGAGGACCTCGGATGGGTGGGGTCGCCGGCCGGGAAAAGCGCGGGGTTGCATCCGGCTGTGTAGGTGCAGCGGCAGAC
GCGCTAGAGGGTGGGGCGGCAGCTGGAGGGGCGCTGGGCGGCGAGGGTCCAA---CGGCGGCAGCTAAAGGGACGCTGCG
A----------------------ATAAGGCGCGGGCGGTGGCGCTGTGTTTTGTCGGATAGCGCGTGAGAGAACTGCATC
TCACCCCGACCAGGAAACACCTGGCGCTCGTGGGTCGTGCGATATGCTCGCAACGAGCGGTCAAGGCGCGGCCGCTCGGT
TTAGCGAAATCGTG------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------
>chr1D_1
ACCAAGAC-TGAATTCTTGGTTGCGCAGCCGTGCAGGAATTATAATCAACTAACCTAAAGCGTTGGCAGTAGGACATTGA
GAGCCACAAATCACACTGAAATA-TTTTATTAGCATTCTCGCGAGCACCATGCTCCTGGGCACTAAATACTCACGTTGAT
ATCCAAATCGAAAGGATCACCGTTATTCCTGCTCTGTCTGATTTGATAATGCACACACGCCTGACGCTTCCATGACAAGG
CCTCCTCCTGCATGCACCTGACCATGTGGTCGCCGCGAAACAGCGGAGGCGGCAGGACCTTGAGGCTCGCCTCGGGGCAT
ATCTGCACGAACTGAGCACCGGGAAGCAGCAACGTCACGGCCAACCTGATA---------TGCTTCCCCGCGAACCCAGA
AGCCTCCACATGCGCGGGCGCACTGGAGAAGACCTCCTGAAAGACGTGGAGCTCCATGAGCGGTCTGTCCTCGCCGAAGA
TGAAAGGGATGGTGTCAAGACGGGGCGAGATCCGAGCCTCGCGGCTGTGGCACGAGGGGTGGCGGTGCAGGACTCACCGG
TGTCGGGAAGGTGTCTAGATGGCGGAGTT---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------
>chr1D_961
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---CCCCGACCAGGAAACAGTTGGCGCTAGTGGCG-GTGCGATATGCTGGCAACGAGCGGTCGAGGCGCGGACGCTCGGT
TCAGCGAAATCGTGCGCACACACGGCGAAGTTTGTTTTTTTTGTTTTTTTTGTTTTTTGTTTCTTTTGCAAAACGAGCTT
TGCAACGCCACACTCGTGCCTGGGACCCTATAAATGGATCGGTGAGGTTGCGCTCAACTTTCTGTCGCAACAAAGCCGGA
AAACTGGTCTGCCCGGAAGCAAGAGATGGCTGACTTGTCCCTCGTGTGCGCGGCATCGCTCCCACTCACTCTGCTCGCGG
CCTACGCGCTACAACCACTCGCCGACGCACGCCGACGCCTCCCGCCCGGCCCAAGGCCACTCCCGGTCCTCGGTAACCTC
CTGGACATCGGCGAGCACCCTCACCGTTCCTTCGCCAGCCTCGCCGACATCCACGGCCCGCTCATGTTCGTCCGCCTCGG
CACTGTCCCAGCCGTCGTGGCCACCTCGCCGGAGGCCGCCCGCGAGGTCCTGCAGAAAAAGAACGCCAGCCTGGCCGCTC
GCCGTGGCCTGGACGCCTGGCGCGTCATGGACCACGACGCCAACTCCATGGTCGCGCTCCCGCCGCGCGGCAAGTGGCGC
GCCTTCAGGCAGCACTCCAGGGCCGCGCTCCTCGGTCCCCGGCCGCTCGACGAGCACCGGGCGGTACGGGAGGAGGAGGC
GCGCGAGCTGGTGCGCCGCGTGTCCGCGGCCGGAGGCGCCCCGGTCGATGTGGCTGGCGAGGCGTTCGTGGCCATGGTGA
ACGTGCTGTGTCGCGGGATGTTCTCGGAGAAGCTAGATCCGGCCGTGGTGTCGGAGCTGACGGGCGTGGCGGAACAGGCG
GCCGTGCTGTCTGGCCTGCCCAACGTGTCTGATTTCTTCCCGGCGCTCGCGGCCCTCGACCTGCAGGGTATCCGGCGCAA
GGCGAGGAAGGTGCTCGCGTGGCTGTATACGCTCATCGACGAGCAGATCGAGCGGCGGAAGCTCAGCCGGGCGGACGGCG
ATGCGCGCAGGAACGATCTGTTGGATGTGTTGCTTGACATGGACGGCGACGTGCAAGACGAAGACGGATGGGTGATGAAC
AAGGAGTCCATCCGAGGTCTATTCATGGTAAGCATGCACACACGACCTTAAAATATGTTATACTTCTTCAATCCTAAATA
TAAGTCTTTCTAAACATTTTAAATGCAATACAACATACGGATGTATGTAGATATATTTAAGAATGTAGATTCATTCATTT
TACTCCGTATGTAGTCACTTATTAAATCTCTAAAAAAACTTATATTTAGAAACGGAGGGAGTAGTTCTAAAAAATACATC
ATATGTCATAGTTTCTCTCTCTAAAAAAACATGTTATAGTTGGCCAAAGTTCTATCCTAAAAGGAGTCAACTACATGCAT
TATGCAACGGAAAAAATAACTACAGAAATGTTATTTTATCGATTTTGCTTTTATGAAATGTTTTGTCAGCTCAGTCACTC
TTTTTCCCCTTTTTGTGCGTGGTTGCTTTTTCTTGCTTTGTTTTTTTAGTGTCTTTTCTCTCTAAAGGGAGTATGTAAAT
ATATAGGTCAATATGTGTGCCTAATCTGTGTATTTTGTGTGGATTTGTGTGCACGGCGTCGTGCGTGTCGCATGT-----
----ATATGTGGGTGCAGGCACGTGTGCGTATGCACGTTCTTTTTTTTTCCGGCGAGGCGTATGTTTGTTCCTGTACGTG
TGGCTAGTGTATGTGCGCAGGAGATGGTACCATACATGAGATAACAGGAACCTTCATTATGGAAATCACACTGCTGTCCG
AATATACACAACTATGTGTGCTTGCATACTGTGAAACAATACAATTTGTGTGCGAGTATTGTCATTTGTTTTGAGTTTTT
TATTTTCCTTATTCTTTAAGTATACC--TGTCTATAATTCATTT-TTTTAGGGAGTCTATAATTCATTATTCATTATAAC
TCATGTTTTCTACCCCCACTCCCACCCAAAGAACCTCTCATGTTTTCTATTTAGTTTTAGTTTTT-ACATTATATTATAT
CTTTTGTTTTAAAAGATAGCTGACATGAAAAAATTTAGTCGCATGTTGAATAGTTGCCACAAATGTATTAATCTCATGTA
TGCATGCATTTTCAGGAATTACTCCTAGGCGCAACATCAGTCCCCACCACAATCGAGTGGGCGATGTCGGAGCTATTGCA
AAACCCTCCCGCTATGCACAAACTCCAAGCGGAGCTCAGGAACGTCCTCGGCACCCGACCATGCACATGGATGGAGGAGT
CCGACACCGGCAGCCTCCCATATCTCCAAGCCGTCGTCAAAGAAACACTACGGCTCCATCCCCCGGTGCCATTCGCCACT
GGGCTAGCTGAGGAGGCGGTGGAGATAGAAGGCTACAACGTCCCTAAGGGCACGACTGCCCTGGTGAACATCTGGGGGAT
ATGCAGAAATGCCGAGGTGTGGGATGAGCCCAACAGGTTCTTGCCGGAAAGGTTCCTGCATAGGGAGATAGAGTTCTTCG
GCGCTGATTTTGAGCTGATCGCATTCAGCGCCGGGAAGCGGATCTGTCCCGGGCTGCAGCTCTCGAGTAAGATGGTGCCA
CTTATACTCGGCTCAATGCTCTATCACTTTGATTGGACATTGCCGGGAGAAGAAGATGCTGCTCATGTAGATATGACAGA
GCAGTTTGGGCTGGTGTTGTCGATGGCTGTCCCGCTACGCGTTGTACCTAAGAAAATATTGTAAGGCCGGTCACAGTGAG
AATATCATATAAAGTATAATGCCCGCCAACTAATTAGTTCAGATAAGGTGACATACAATTAAATGAAGAAAGAAGGATTC
AGTATCATAATATGATACCATATCATATTAAACAATGTGCTACTATTTGTCATGCGTAATAATAAATAAGTTTATCTACA
ATATCAATGTATGATACTATGTAGCATGGAGGTA-------------GTATCATACGATACCCCACTACGACCAGCCTGC
TACAGTGTTGTGCATGATTAACTAATGTTCAGCAAGAAGTTGATTGAATGAGCTTAATGTGGATTAAGGAGGTTACATGT
CCTACAAGTTAAAATTCCTCTCAATACCCTCTAATCCTCTTGAGTTGATTAGGATTAATCGAACAAGGCCTCCATAGAGA
AAATTGCGGCCGCCTCTACCCATCAGTGGTGGCGGAAGACTATGTGTCAATTCAGTTCAAAAAAAAGAAGACCATGTGTC
AATGTGTGAGCGGCTTGCATTCGGAACACGGCTCAACAGCGCCATCCTGTGCCGGTGCTAGTCTAAGTCGAGCCGGCACG
ACCAGGTTCATACAGCTGGCCGACACGATGCGACACCGACTCCATTCACACCTACTCCCTTCGTTCACAAATATATGTAC
TAACTTTTTTATAAATCAAATGTATATAAATACATGTTAGTGTGTTTGTTCACTCGTTTTAACATGCATATAATTTATAT
TAAAATATGTAAAACATTTTATATTTGTAAACGAATGGAGTACTGCATTAGAGCATCTACAGGCAGAGATAGCAAATTCA
GGTCCCCAAACGCCCAAGGACGCGCCGGGCGCGCCCGCAGGCACTGACCGGGCACGCCTTATTTGTTGGCTTTCACATAT
GTGTTCCTCATATCCGAAATCTTAAAACCATACAACCAATACAATGCTACGTAAAAGATGATCATCGGACTCAACACACG
CAGTTCATTGG-----------------------------------------------------------
>SNPs
--------------S---S-----------------S--------------------------S----------------
----------------------------------------------------S---------------------S-----
----------------------------------------------------------S--S-S----------------
--------------------------------------------------------------------------------
-------------------------------------------------SSSSSSSSSSS--------------------
------------S------------------------S------------------------------------------
-----------------------S----------------------------S-----------------------S---
---------------------------------------S-------S------S----S--------------S---S-
-S-------S-S-S---S-----S------S-----------------S-----S--S----------------------
-------------------------------SS-----S---S-------------------------------------
-------------------------S---S------S-------------S-SSS-------S---------S-----SS
SSSSSSSSSSSSSSSSSSSSSSS------------SS-----S---S------------------------------S--
-SS-------S-----------------------S---------------------------------------------
--------------SSSSSSSSS---------------------------------------------------------
--------------------------S-----------S------------------------------S----------
---------S----------------------------------------------------------------------
-------------------S--------S-----------------------S------------S--------------
--S-----------------------------------------------------------------------------
----------------------------------------------------------------------S---------
--------------------------------------------------------------------------------
-----------------------------------S-----------------------------S--------------
---------------S---S-----------------------------------S------------------------
----------S----------------------------------------------------S----------S-----
-----------S--------------------------------------------------------------------
----S---------------------------------------------------------------------------
------------------------------------------------------S------S------------------
S----------------------S--------------------------SS----------S-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------S------------S------------------S---------
---------------SS-S----------S-------------------S--------------------S---------
-----S---------------------------------S----SS-SS-SSS----S-S-SS-----------------
----------------------S-----------S-----------------------------------S----SSSSS
SSSS-------S-----S--------------------------------------------------------------
--------------------------S-----------------S-----------------------------------
-----------------------------------------------------S---S----------------------
--------------------------SS-----S----------S-----------------------------------
-----------------------------------S-----------------------------S--------------
S-------------SS---S---------------S-S-------------------------------S----------
--------------------------------------------------------------------------------
---------------S------------------------------------------------S---------------
--------------------------------------------------------------------------------
--------S-----------------------------------------------------------------------
-------------S----S-------------------------------------------------------------
-S--S--------------------------------------------S------------------------------
----------------------------------------------------------------S---------------
---------S-----------S----------------------------------------------------------
-S-------------------------------S----------S----------S----S------------------S
---------------S------------------------S--------------S---S--------------S-----
------S-S---------------S------S--SSSSSSSSSSSSS---------S-------------------S--S
---------------------S----S------S--S-----------------------------------------S-
---S-------------------------------------------------------------------S--------
--------S-----------------------------------------------------------------------
---------------------------------------------------------------SS--------S------
----S---------------------S--S-------------------------------------S------------
-----S---S-------------------------S-------S---S----S-SS------S---S-----S-------
-----------------S--------------S---S-----S----S-----------S-SS--------------S--
-----S----S----------S-----------S----SSS---------------S--S---------S--SS---SS-
SS--SS--------S-------S-----------------S---SS---S---------S-----S---SSS-S----S-
S-------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_962
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------GCGTGAGAGAACTGCGTC
TT------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------
>reverse_2081
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
CAGGAGTCCATCCGAGGTCT------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------
>forward_1511
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------GCAGAAAAAGAACGCCAGCA---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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----------------------------------------------------------------------
>reverse_3690
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------ACTGGTGTTGTCCATGGCTG---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------
>forward_2131
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------GCATGCACACACGACCTTAG-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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----------------------------------------------------------------------
>reverse_4325
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----AGTTCATACAGCTGGCCGAC--------------------------------------------------------
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