Multiple sequence alignment - TraesCS1A01G072500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G072500 chr1A 100.000 2294 0 0 1 2294 56600206 56602499 0.000000e+00 4237.0
1 TraesCS1A01G072500 chr1A 94.767 344 18 0 1448 1791 452047185 452047528 9.330000e-149 536.0
2 TraesCS1A01G072500 chr1A 95.000 340 16 1 1449 1787 41872701 41872362 1.210000e-147 532.0
3 TraesCS1A01G072500 chr1A 98.611 216 3 0 2000 2215 452047535 452047750 1.290000e-102 383.0
4 TraesCS1A01G072500 chr1A 94.372 231 9 4 1989 2216 300769793 300770022 3.630000e-93 351.0
5 TraesCS1A01G072500 chr1A 98.500 200 2 1 1792 1990 333912946 333912747 3.630000e-93 351.0
6 TraesCS1A01G072500 chr1B 88.311 1326 102 19 51 1339 92550730 92552039 0.000000e+00 1541.0
7 TraesCS1A01G072500 chr1B 89.855 69 6 1 2215 2283 633041118 633041051 1.130000e-13 87.9
8 TraesCS1A01G072500 chr1D 86.255 1295 136 27 65 1339 57315085 57316357 0.000000e+00 1367.0
9 TraesCS1A01G072500 chr7B 98.837 344 4 0 1449 1792 696588211 696588554 4.190000e-172 614.0
10 TraesCS1A01G072500 chr7B 98.693 306 4 0 1989 2294 696588550 696588855 5.570000e-151 544.0
11 TraesCS1A01G072500 chr3A 98.256 344 4 2 1449 1792 430397432 430397091 3.260000e-168 601.0
12 TraesCS1A01G072500 chr3A 97.357 227 6 0 1989 2215 430397095 430396869 9.940000e-104 387.0
13 TraesCS1A01G072500 chr3A 96.985 199 5 1 1792 1989 637292326 637292524 1.310000e-87 333.0
14 TraesCS1A01G072500 chr3A 92.754 69 4 1 2215 2283 234972295 234972362 5.220000e-17 99.0
15 TraesCS1A01G072500 chr4A 97.391 345 8 1 1447 1791 323532612 323532269 9.130000e-164 586.0
16 TraesCS1A01G072500 chr4A 95.965 347 13 1 1447 1792 632866420 632866766 1.540000e-156 562.0
17 TraesCS1A01G072500 chr4A 97.797 227 5 0 1989 2215 323532272 323532046 2.140000e-105 392.0
18 TraesCS1A01G072500 chr4A 96.053 228 7 2 1989 2215 632866762 632866988 1.000000e-98 370.0
19 TraesCS1A01G072500 chr4A 97.000 200 5 1 1792 1990 697946350 697946151 3.650000e-88 335.0
20 TraesCS1A01G072500 chr4A 96.517 201 6 1 1792 1991 588185672 588185872 4.720000e-87 331.0
21 TraesCS1A01G072500 chr4A 88.571 70 6 2 2215 2283 667313175 667313107 1.460000e-12 84.2
22 TraesCS1A01G072500 chr3B 96.821 346 9 1 1449 1792 766166189 766165844 5.500000e-161 577.0
23 TraesCS1A01G072500 chr3B 96.035 227 9 0 1989 2215 766165848 766165622 1.000000e-98 370.0
24 TraesCS1A01G072500 chr5A 95.652 345 15 0 1448 1792 677745958 677745614 2.570000e-154 555.0
25 TraesCS1A01G072500 chr5A 96.507 229 5 2 1989 2215 677745618 677745391 2.150000e-100 375.0
26 TraesCS1A01G072500 chr5B 93.913 345 20 1 1449 1792 406281323 406281667 9.390000e-144 520.0
27 TraesCS1A01G072500 chr7A 96.117 206 7 1 1788 1992 680534133 680533928 3.650000e-88 335.0
28 TraesCS1A01G072500 chr6B 96.117 206 7 1 1787 1991 447685338 447685133 3.650000e-88 335.0
29 TraesCS1A01G072500 chr6B 97.000 200 5 1 1792 1990 703748803 703748604 3.650000e-88 335.0
30 TraesCS1A01G072500 chr6B 95.631 206 8 1 1787 1991 205275781 205275986 1.700000e-86 329.0
31 TraesCS1A01G072500 chr6B 89.855 69 6 1 2215 2283 706000870 706000803 1.130000e-13 87.9
32 TraesCS1A01G072500 chr2D 93.925 214 11 2 1785 1996 10277186 10277399 2.840000e-84 322.0
33 TraesCS1A01G072500 chr2A 92.991 214 14 1 2002 2215 475924392 475924180 6.150000e-81 311.0
34 TraesCS1A01G072500 chr2B 81.600 125 18 3 377 497 119183744 119183867 5.220000e-17 99.0
35 TraesCS1A01G072500 chr4B 91.549 71 5 1 2213 2283 567184106 567184175 1.880000e-16 97.1
36 TraesCS1A01G072500 chr4B 91.304 69 5 1 2215 2283 187621257 187621324 2.430000e-15 93.5
37 TraesCS1A01G072500 chr6D 91.304 69 5 1 2215 2283 163323793 163323860 2.430000e-15 93.5
38 TraesCS1A01G072500 chr6A 91.304 69 5 1 2215 2283 493725937 493726004 2.430000e-15 93.5
39 TraesCS1A01G072500 chrUn 94.444 36 2 0 935 970 42088119 42088154 3.180000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G072500 chr1A 56600206 56602499 2293 False 4237.0 4237 100.0000 1 2294 1 chr1A.!!$F1 2293
1 TraesCS1A01G072500 chr1A 452047185 452047750 565 False 459.5 536 96.6890 1448 2215 2 chr1A.!!$F3 767
2 TraesCS1A01G072500 chr1B 92550730 92552039 1309 False 1541.0 1541 88.3110 51 1339 1 chr1B.!!$F1 1288
3 TraesCS1A01G072500 chr1D 57315085 57316357 1272 False 1367.0 1367 86.2550 65 1339 1 chr1D.!!$F1 1274
4 TraesCS1A01G072500 chr7B 696588211 696588855 644 False 579.0 614 98.7650 1449 2294 2 chr7B.!!$F1 845
5 TraesCS1A01G072500 chr3A 430396869 430397432 563 True 494.0 601 97.8065 1449 2215 2 chr3A.!!$R1 766
6 TraesCS1A01G072500 chr4A 323532046 323532612 566 True 489.0 586 97.5940 1447 2215 2 chr4A.!!$R3 768
7 TraesCS1A01G072500 chr4A 632866420 632866988 568 False 466.0 562 96.0090 1447 2215 2 chr4A.!!$F2 768
8 TraesCS1A01G072500 chr3B 766165622 766166189 567 True 473.5 577 96.4280 1449 2215 2 chr3B.!!$R1 766
9 TraesCS1A01G072500 chr5A 677745391 677745958 567 True 465.0 555 96.0795 1448 2215 2 chr5A.!!$R1 767

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
565 576 0.1792 CGCACCAAAGGTAACATCGC 60.179 55.0 0.0 0.0 41.41 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1856 1904 0.032515 TCCCGATGGAGAGGTGCTTA 60.033 55.0 0.0 0.0 35.03 3.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 7.813852 ATCTGACGACTAAAACTTCATGTAC 57.186 36.000 0.00 0.00 0.00 2.90
28 29 6.978338 TCTGACGACTAAAACTTCATGTACT 58.022 36.000 0.00 0.00 0.00 2.73
29 30 7.082602 TCTGACGACTAAAACTTCATGTACTC 58.917 38.462 0.00 0.00 0.00 2.59
30 31 6.154445 TGACGACTAAAACTTCATGTACTCC 58.846 40.000 0.00 0.00 0.00 3.85
31 32 6.015688 TGACGACTAAAACTTCATGTACTCCT 60.016 38.462 0.00 0.00 0.00 3.69
32 33 7.175467 TGACGACTAAAACTTCATGTACTCCTA 59.825 37.037 0.00 0.00 0.00 2.94
33 34 7.311408 ACGACTAAAACTTCATGTACTCCTAC 58.689 38.462 0.00 0.00 0.00 3.18
34 35 6.468319 CGACTAAAACTTCATGTACTCCTACG 59.532 42.308 0.00 0.00 0.00 3.51
35 36 7.224522 ACTAAAACTTCATGTACTCCTACGT 57.775 36.000 0.00 0.00 0.00 3.57
36 37 8.340618 ACTAAAACTTCATGTACTCCTACGTA 57.659 34.615 0.00 0.00 0.00 3.57
37 38 8.964772 ACTAAAACTTCATGTACTCCTACGTAT 58.035 33.333 0.00 0.00 0.00 3.06
40 41 8.517062 AAACTTCATGTACTCCTACGTATACT 57.483 34.615 0.00 0.00 0.00 2.12
41 42 8.517062 AACTTCATGTACTCCTACGTATACTT 57.483 34.615 0.00 0.00 0.00 2.24
42 43 8.152309 ACTTCATGTACTCCTACGTATACTTC 57.848 38.462 0.00 0.00 0.00 3.01
43 44 7.992033 ACTTCATGTACTCCTACGTATACTTCT 59.008 37.037 0.00 0.00 0.00 2.85
44 45 7.959689 TCATGTACTCCTACGTATACTTCTC 57.040 40.000 0.00 0.00 0.00 2.87
45 46 6.644181 TCATGTACTCCTACGTATACTTCTCG 59.356 42.308 0.00 0.00 0.00 4.04
46 47 5.292765 TGTACTCCTACGTATACTTCTCGG 58.707 45.833 0.00 0.00 0.00 4.63
47 48 4.414337 ACTCCTACGTATACTTCTCGGT 57.586 45.455 0.00 0.00 0.00 4.69
48 49 4.376146 ACTCCTACGTATACTTCTCGGTC 58.624 47.826 0.00 0.00 0.00 4.79
49 50 4.141846 ACTCCTACGTATACTTCTCGGTCA 60.142 45.833 0.00 0.00 0.00 4.02
58 59 2.086869 ACTTCTCGGTCATTGCATTGG 58.913 47.619 8.64 0.00 0.00 3.16
70 75 3.788227 TTGCATTGGTCACCTAAGTCT 57.212 42.857 0.00 0.00 0.00 3.24
101 106 1.493950 CGAACGCCTGCATCCATCTC 61.494 60.000 0.00 0.00 0.00 2.75
106 113 1.417288 GCCTGCATCCATCTCTCCCT 61.417 60.000 0.00 0.00 0.00 4.20
109 116 1.070445 CTGCATCCATCTCTCCCTGAC 59.930 57.143 0.00 0.00 0.00 3.51
112 119 2.485124 GCATCCATCTCTCCCTGACAAG 60.485 54.545 0.00 0.00 0.00 3.16
127 134 5.812642 CCCTGACAAGTTGCTATAACTACTG 59.187 44.000 1.81 0.00 0.00 2.74
133 140 4.595116 AGTTGCTATAACTACTGTACGCG 58.405 43.478 3.53 3.53 0.00 6.01
151 158 4.408821 TCGCCTGTGATGCACCCC 62.409 66.667 0.00 0.00 32.73 4.95
161 170 1.203162 TGATGCACCCCCAAACTCAAT 60.203 47.619 0.00 0.00 0.00 2.57
185 194 5.239306 TCCTTAAACATCACAAGCTTGAGTG 59.761 40.000 32.50 25.29 37.10 3.51
188 197 3.482156 ACATCACAAGCTTGAGTGTCT 57.518 42.857 32.50 6.30 37.07 3.41
191 200 5.555017 ACATCACAAGCTTGAGTGTCTATT 58.445 37.500 32.50 3.89 37.07 1.73
193 202 5.213891 TCACAAGCTTGAGTGTCTATTGA 57.786 39.130 32.50 18.30 37.07 2.57
204 213 6.950842 TGAGTGTCTATTGATCAATCCACTT 58.049 36.000 29.67 20.89 35.95 3.16
312 323 4.832608 CGCAGGTTACCGGCTCCC 62.833 72.222 22.70 0.00 42.35 4.30
323 334 2.947532 CGGCTCCCACTTGCTCAGA 61.948 63.158 0.00 0.00 0.00 3.27
348 359 1.069090 GGGTGCACACTGAAGACGA 59.931 57.895 20.43 0.00 0.00 4.20
350 361 1.548973 GGTGCACACTGAAGACGACG 61.549 60.000 20.43 0.00 0.00 5.12
351 362 1.299850 TGCACACTGAAGACGACGG 60.300 57.895 0.00 0.00 0.00 4.79
377 388 2.031163 ACGCTGGTCAAGTCAGGC 59.969 61.111 0.00 0.00 33.16 4.85
429 440 2.874664 AAGTGCTACCCGAACGGCA 61.875 57.895 7.80 0.00 33.26 5.69
431 442 2.357760 TGCTACCCGAACGGCAAC 60.358 61.111 7.80 0.00 33.26 4.17
433 444 1.743995 GCTACCCGAACGGCAACAT 60.744 57.895 7.80 0.00 33.26 2.71
462 473 1.814772 CGGCTGGCTCTCCCTCTATG 61.815 65.000 0.00 0.00 0.00 2.23
507 518 3.408020 GCGACGCAACGGCTTGTA 61.408 61.111 16.42 0.00 38.10 2.41
510 521 1.076533 CGACGCAACGGCTTGTATCT 61.077 55.000 0.00 0.00 38.10 1.98
560 571 3.752704 TGGCGCACCAAAGGTAAC 58.247 55.556 10.83 0.00 45.37 2.50
562 573 0.538516 TGGCGCACCAAAGGTAACAT 60.539 50.000 10.83 0.00 45.37 2.71
565 576 0.179200 CGCACCAAAGGTAACATCGC 60.179 55.000 0.00 0.00 41.41 4.58
579 590 4.393155 TCGCAGCCGAAGCCATGT 62.393 61.111 0.00 0.00 41.17 3.21
580 591 3.434319 CGCAGCCGAAGCCATGTT 61.434 61.111 0.00 0.00 41.25 2.71
593 630 1.229145 CATGTTGGGGCTGGGGAAA 60.229 57.895 0.00 0.00 0.00 3.13
636 673 3.214328 GGACAAGGAGAAGCAGTTCAAA 58.786 45.455 0.00 0.00 34.82 2.69
668 708 0.816421 TCCATCCTATGCGACGTCGA 60.816 55.000 39.74 24.63 43.02 4.20
688 728 3.220658 TCCTCGACGTGCACACCA 61.221 61.111 18.64 0.00 0.00 4.17
717 757 4.451150 GCCGGCCTCACATCGACA 62.451 66.667 18.11 0.00 0.00 4.35
718 758 2.501128 CCGGCCTCACATCGACAT 59.499 61.111 0.00 0.00 0.00 3.06
768 808 2.125229 CACCAGCAGCTCGCAGAT 60.125 61.111 10.16 0.00 46.13 2.90
769 809 2.172372 CACCAGCAGCTCGCAGATC 61.172 63.158 10.16 0.00 46.13 2.75
819 859 4.632458 GAGATCGAGGTCGGCGGC 62.632 72.222 7.21 4.32 40.29 6.53
960 1000 3.018856 CAAGGCCATGCTTCACTTCATA 58.981 45.455 5.01 0.00 0.00 2.15
976 1016 0.317519 CATATACACGGACGCGCTGA 60.318 55.000 5.73 0.00 0.00 4.26
1078 1118 4.828925 GCGAGGAGGAGCTGTGCC 62.829 72.222 0.00 0.00 0.00 5.01
1080 1120 4.828925 GAGGAGGAGCTGTGCCGC 62.829 72.222 0.00 0.00 0.00 6.53
1215 1258 2.809601 ATGGCGACGCGTGACTTC 60.810 61.111 20.70 0.00 0.00 3.01
1248 1291 2.360475 GGTTGCCACCCTGCTCTC 60.360 66.667 0.00 0.00 37.03 3.20
1307 1350 1.783250 GCATAGCATAGGGCCCCTGT 61.783 60.000 21.43 1.46 46.50 4.00
1310 1353 0.836400 TAGCATAGGGCCCCTGTAGC 60.836 60.000 21.43 16.16 46.50 3.58
1311 1354 2.150051 GCATAGGGCCCCTGTAGCT 61.150 63.158 21.43 0.00 34.61 3.32
1312 1355 2.062070 CATAGGGCCCCTGTAGCTC 58.938 63.158 21.43 0.00 34.61 4.09
1339 1382 1.669265 GGATTAGTGCGTTAACTGGGC 59.331 52.381 3.71 0.43 0.00 5.36
1340 1383 2.629051 GATTAGTGCGTTAACTGGGCT 58.371 47.619 3.71 0.00 0.00 5.19
1341 1384 2.088950 TTAGTGCGTTAACTGGGCTC 57.911 50.000 3.71 1.36 0.00 4.70
1342 1385 0.108992 TAGTGCGTTAACTGGGCTCG 60.109 55.000 3.71 0.00 0.00 5.03
1343 1386 1.666872 GTGCGTTAACTGGGCTCGT 60.667 57.895 3.71 0.00 0.00 4.18
1344 1387 0.388907 GTGCGTTAACTGGGCTCGTA 60.389 55.000 3.71 0.00 0.00 3.43
1345 1388 0.533491 TGCGTTAACTGGGCTCGTAT 59.467 50.000 3.71 0.00 0.00 3.06
1346 1389 0.928229 GCGTTAACTGGGCTCGTATG 59.072 55.000 3.71 0.00 0.00 2.39
1347 1390 1.470285 GCGTTAACTGGGCTCGTATGA 60.470 52.381 3.71 0.00 0.00 2.15
1348 1391 2.460918 CGTTAACTGGGCTCGTATGAG 58.539 52.381 7.65 7.65 45.49 2.90
1349 1392 2.159282 CGTTAACTGGGCTCGTATGAGT 60.159 50.000 13.46 0.00 44.48 3.41
1350 1393 3.675228 CGTTAACTGGGCTCGTATGAGTT 60.675 47.826 13.46 3.18 44.48 3.01
1351 1394 2.674796 AACTGGGCTCGTATGAGTTC 57.325 50.000 13.46 6.75 44.48 3.01
1352 1395 1.853963 ACTGGGCTCGTATGAGTTCT 58.146 50.000 13.46 0.00 44.48 3.01
1353 1396 1.751924 ACTGGGCTCGTATGAGTTCTC 59.248 52.381 13.46 0.00 44.48 2.87
1354 1397 0.738975 TGGGCTCGTATGAGTTCTCG 59.261 55.000 13.46 0.00 44.48 4.04
1355 1398 0.739561 GGGCTCGTATGAGTTCTCGT 59.260 55.000 13.46 0.24 44.48 4.18
1356 1399 1.268640 GGGCTCGTATGAGTTCTCGTC 60.269 57.143 13.46 0.00 44.48 4.20
1357 1400 1.595003 GGCTCGTATGAGTTCTCGTCG 60.595 57.143 13.46 3.51 44.48 5.12
1358 1401 1.732528 CTCGTATGAGTTCTCGTCGC 58.267 55.000 3.59 0.00 37.46 5.19
1359 1402 1.328069 CTCGTATGAGTTCTCGTCGCT 59.672 52.381 3.59 0.00 37.46 4.93
1360 1403 2.538861 CTCGTATGAGTTCTCGTCGCTA 59.461 50.000 3.59 0.00 37.46 4.26
1361 1404 2.538861 TCGTATGAGTTCTCGTCGCTAG 59.461 50.000 0.00 0.00 0.00 3.42
1362 1405 2.641912 GTATGAGTTCTCGTCGCTAGC 58.358 52.381 4.06 4.06 0.00 3.42
1363 1406 1.095600 ATGAGTTCTCGTCGCTAGCA 58.904 50.000 16.45 0.00 0.00 3.49
1364 1407 0.879090 TGAGTTCTCGTCGCTAGCAA 59.121 50.000 16.45 0.00 0.00 3.91
1365 1408 1.135660 TGAGTTCTCGTCGCTAGCAAG 60.136 52.381 16.45 6.32 0.00 4.01
1366 1409 1.130749 GAGTTCTCGTCGCTAGCAAGA 59.869 52.381 16.45 9.40 0.00 3.02
1367 1410 1.746220 AGTTCTCGTCGCTAGCAAGAT 59.254 47.619 16.45 0.00 0.00 2.40
1368 1411 1.849219 GTTCTCGTCGCTAGCAAGATG 59.151 52.381 16.45 10.29 0.00 2.90
1369 1412 0.248661 TCTCGTCGCTAGCAAGATGC 60.249 55.000 16.45 0.00 45.46 3.91
1381 1424 3.795623 GCAAGATGCATGATTTCCACT 57.204 42.857 2.46 0.00 44.26 4.00
1382 1425 4.119442 GCAAGATGCATGATTTCCACTT 57.881 40.909 2.46 0.00 44.26 3.16
1383 1426 4.501071 GCAAGATGCATGATTTCCACTTT 58.499 39.130 2.46 0.00 44.26 2.66
1384 1427 4.933400 GCAAGATGCATGATTTCCACTTTT 59.067 37.500 2.46 0.00 44.26 2.27
1385 1428 5.063060 GCAAGATGCATGATTTCCACTTTTC 59.937 40.000 2.46 0.00 44.26 2.29
1386 1429 5.988310 AGATGCATGATTTCCACTTTTCA 57.012 34.783 2.46 0.00 0.00 2.69
1387 1430 6.349243 AGATGCATGATTTCCACTTTTCAA 57.651 33.333 2.46 0.00 0.00 2.69
1388 1431 6.395629 AGATGCATGATTTCCACTTTTCAAG 58.604 36.000 2.46 0.00 0.00 3.02
1389 1432 5.534207 TGCATGATTTCCACTTTTCAAGT 57.466 34.783 0.00 0.00 44.06 3.16
1390 1433 5.916318 TGCATGATTTCCACTTTTCAAGTT 58.084 33.333 0.00 0.00 40.46 2.66
1391 1434 6.347696 TGCATGATTTCCACTTTTCAAGTTT 58.652 32.000 0.00 0.00 40.46 2.66
1392 1435 6.479660 TGCATGATTTCCACTTTTCAAGTTTC 59.520 34.615 0.00 0.00 40.46 2.78
1393 1436 6.479660 GCATGATTTCCACTTTTCAAGTTTCA 59.520 34.615 0.00 0.00 40.46 2.69
1394 1437 7.011295 GCATGATTTCCACTTTTCAAGTTTCAA 59.989 33.333 0.00 0.00 40.46 2.69
1395 1438 7.826260 TGATTTCCACTTTTCAAGTTTCAAC 57.174 32.000 0.00 0.00 40.46 3.18
1396 1439 7.382110 TGATTTCCACTTTTCAAGTTTCAACA 58.618 30.769 0.00 0.00 40.46 3.33
1397 1440 7.545265 TGATTTCCACTTTTCAAGTTTCAACAG 59.455 33.333 0.00 0.00 40.46 3.16
1398 1441 6.582677 TTCCACTTTTCAAGTTTCAACAGA 57.417 33.333 0.00 0.00 40.46 3.41
1399 1442 5.949735 TCCACTTTTCAAGTTTCAACAGAC 58.050 37.500 0.00 0.00 40.46 3.51
1400 1443 5.475220 TCCACTTTTCAAGTTTCAACAGACA 59.525 36.000 0.00 0.00 40.46 3.41
1401 1444 6.152661 TCCACTTTTCAAGTTTCAACAGACAT 59.847 34.615 0.00 0.00 40.46 3.06
1402 1445 6.473455 CCACTTTTCAAGTTTCAACAGACATC 59.527 38.462 0.00 0.00 40.46 3.06
1403 1446 6.473455 CACTTTTCAAGTTTCAACAGACATCC 59.527 38.462 0.00 0.00 40.46 3.51
1404 1447 4.811555 TTCAAGTTTCAACAGACATCCG 57.188 40.909 0.00 0.00 0.00 4.18
1405 1448 4.066646 TCAAGTTTCAACAGACATCCGA 57.933 40.909 0.00 0.00 0.00 4.55
1406 1449 4.058124 TCAAGTTTCAACAGACATCCGAG 58.942 43.478 0.00 0.00 0.00 4.63
1407 1450 3.753294 AGTTTCAACAGACATCCGAGT 57.247 42.857 0.00 0.00 0.00 4.18
1408 1451 4.073293 AGTTTCAACAGACATCCGAGTT 57.927 40.909 0.00 0.00 0.00 3.01
1409 1452 4.058817 AGTTTCAACAGACATCCGAGTTC 58.941 43.478 0.00 0.00 0.00 3.01
1410 1453 4.058817 GTTTCAACAGACATCCGAGTTCT 58.941 43.478 0.00 0.00 0.00 3.01
1411 1454 3.303881 TCAACAGACATCCGAGTTCTG 57.696 47.619 7.27 7.27 34.85 3.02
1412 1455 2.890945 TCAACAGACATCCGAGTTCTGA 59.109 45.455 13.56 0.00 33.15 3.27
1413 1456 3.320826 TCAACAGACATCCGAGTTCTGAA 59.679 43.478 13.56 0.00 33.15 3.02
1414 1457 4.058124 CAACAGACATCCGAGTTCTGAAA 58.942 43.478 13.56 0.00 33.15 2.69
1415 1458 4.336889 ACAGACATCCGAGTTCTGAAAA 57.663 40.909 13.56 0.00 33.15 2.29
1416 1459 4.310769 ACAGACATCCGAGTTCTGAAAAG 58.689 43.478 13.56 0.00 33.15 2.27
1417 1460 4.039245 ACAGACATCCGAGTTCTGAAAAGA 59.961 41.667 13.56 0.00 33.15 2.52
1418 1461 4.387256 CAGACATCCGAGTTCTGAAAAGAC 59.613 45.833 3.79 0.00 0.00 3.01
1419 1462 4.282195 AGACATCCGAGTTCTGAAAAGACT 59.718 41.667 0.00 0.00 0.00 3.24
1420 1463 5.477291 AGACATCCGAGTTCTGAAAAGACTA 59.523 40.000 0.00 0.00 0.00 2.59
1421 1464 6.153680 AGACATCCGAGTTCTGAAAAGACTAT 59.846 38.462 0.00 0.00 0.00 2.12
1422 1465 6.702329 ACATCCGAGTTCTGAAAAGACTATT 58.298 36.000 0.00 0.00 0.00 1.73
1423 1466 7.837863 ACATCCGAGTTCTGAAAAGACTATTA 58.162 34.615 0.00 0.00 0.00 0.98
1424 1467 8.478877 ACATCCGAGTTCTGAAAAGACTATTAT 58.521 33.333 0.00 0.00 0.00 1.28
1425 1468 9.319143 CATCCGAGTTCTGAAAAGACTATTATT 57.681 33.333 0.00 0.00 0.00 1.40
1570 1616 8.893563 TCCCAATATAACACTTTCATCCTTTT 57.106 30.769 0.00 0.00 0.00 2.27
1668 1714 3.517296 TGCTGTCCAATTTAAGGGTGA 57.483 42.857 0.00 0.00 0.00 4.02
1792 1840 3.120130 ACGCACGTATAAAACAACATGGG 60.120 43.478 0.00 0.00 0.00 4.00
1794 1842 3.765026 CACGTATAAAACAACATGGGCC 58.235 45.455 0.00 0.00 0.00 5.80
1795 1843 2.756207 ACGTATAAAACAACATGGGCCC 59.244 45.455 17.59 17.59 0.00 5.80
1796 1844 3.020984 CGTATAAAACAACATGGGCCCT 58.979 45.455 25.70 5.48 0.00 5.19
1797 1845 3.181491 CGTATAAAACAACATGGGCCCTG 60.181 47.826 25.70 20.51 0.00 4.45
1798 1846 2.390225 TAAAACAACATGGGCCCTGT 57.610 45.000 25.70 21.20 0.00 4.00
1799 1847 1.506025 AAAACAACATGGGCCCTGTT 58.494 45.000 25.70 25.46 37.31 3.16
1800 1848 1.506025 AAACAACATGGGCCCTGTTT 58.494 45.000 26.36 26.36 37.21 2.83
1801 1849 0.758123 AACAACATGGGCCCTGTTTG 59.242 50.000 27.29 24.42 34.69 2.93
1802 1850 1.120795 ACAACATGGGCCCTGTTTGG 61.121 55.000 27.29 21.40 34.69 3.28
1803 1851 0.831288 CAACATGGGCCCTGTTTGGA 60.831 55.000 27.29 7.46 34.69 3.53
1804 1852 0.116940 AACATGGGCCCTGTTTGGAT 59.883 50.000 25.70 2.32 38.35 3.41
1805 1853 1.006813 ACATGGGCCCTGTTTGGATA 58.993 50.000 25.70 0.00 38.35 2.59
1806 1854 1.341976 ACATGGGCCCTGTTTGGATAC 60.342 52.381 25.70 0.00 38.35 2.24
1807 1855 1.063717 CATGGGCCCTGTTTGGATACT 60.064 52.381 25.70 0.00 38.35 2.12
1808 1856 0.623723 TGGGCCCTGTTTGGATACTC 59.376 55.000 25.70 0.00 38.35 2.59
1809 1857 0.919710 GGGCCCTGTTTGGATACTCT 59.080 55.000 17.04 0.00 38.35 3.24
1810 1858 2.124411 GGGCCCTGTTTGGATACTCTA 58.876 52.381 17.04 0.00 38.35 2.43
1811 1859 2.508300 GGGCCCTGTTTGGATACTCTAA 59.492 50.000 17.04 0.00 38.35 2.10
1812 1860 3.542648 GGCCCTGTTTGGATACTCTAAC 58.457 50.000 0.00 0.00 38.35 2.34
1813 1861 3.054655 GGCCCTGTTTGGATACTCTAACA 60.055 47.826 0.00 0.00 38.35 2.41
1814 1862 3.939592 GCCCTGTTTGGATACTCTAACAC 59.060 47.826 0.00 0.00 38.35 3.32
1815 1863 4.564821 GCCCTGTTTGGATACTCTAACACA 60.565 45.833 0.00 0.00 38.35 3.72
1816 1864 5.178797 CCCTGTTTGGATACTCTAACACAG 58.821 45.833 0.00 0.00 38.35 3.66
1817 1865 5.280011 CCCTGTTTGGATACTCTAACACAGT 60.280 44.000 0.00 0.00 38.35 3.55
1818 1866 6.231211 CCTGTTTGGATACTCTAACACAGTT 58.769 40.000 0.00 0.00 38.35 3.16
1819 1867 7.383687 CCTGTTTGGATACTCTAACACAGTTA 58.616 38.462 0.00 0.00 38.35 2.24
1820 1868 7.545965 CCTGTTTGGATACTCTAACACAGTTAG 59.454 40.741 9.97 9.97 38.35 2.34
1821 1869 8.185506 TGTTTGGATACTCTAACACAGTTAGA 57.814 34.615 16.22 16.22 31.46 2.10
1851 1899 8.319881 AGAGTTATTTTCTAACCCACTCTAACC 58.680 37.037 0.00 0.00 38.16 2.85
1852 1900 7.400439 AGTTATTTTCTAACCCACTCTAACCC 58.600 38.462 0.00 0.00 0.00 4.11
1853 1901 5.853572 ATTTTCTAACCCACTCTAACCCA 57.146 39.130 0.00 0.00 0.00 4.51
1854 1902 5.649970 TTTTCTAACCCACTCTAACCCAA 57.350 39.130 0.00 0.00 0.00 4.12
1855 1903 5.649970 TTTCTAACCCACTCTAACCCAAA 57.350 39.130 0.00 0.00 0.00 3.28
1856 1904 5.853572 TTCTAACCCACTCTAACCCAAAT 57.146 39.130 0.00 0.00 0.00 2.32
1857 1905 6.956102 TTCTAACCCACTCTAACCCAAATA 57.044 37.500 0.00 0.00 0.00 1.40
1858 1906 6.956102 TCTAACCCACTCTAACCCAAATAA 57.044 37.500 0.00 0.00 0.00 1.40
1859 1907 6.954232 TCTAACCCACTCTAACCCAAATAAG 58.046 40.000 0.00 0.00 0.00 1.73
1860 1908 3.964411 ACCCACTCTAACCCAAATAAGC 58.036 45.455 0.00 0.00 0.00 3.09
1861 1909 3.332485 ACCCACTCTAACCCAAATAAGCA 59.668 43.478 0.00 0.00 0.00 3.91
1862 1910 3.694566 CCCACTCTAACCCAAATAAGCAC 59.305 47.826 0.00 0.00 0.00 4.40
1863 1911 3.694566 CCACTCTAACCCAAATAAGCACC 59.305 47.826 0.00 0.00 0.00 5.01
1864 1912 4.567747 CCACTCTAACCCAAATAAGCACCT 60.568 45.833 0.00 0.00 0.00 4.00
1865 1913 4.636206 CACTCTAACCCAAATAAGCACCTC 59.364 45.833 0.00 0.00 0.00 3.85
1866 1914 4.536489 ACTCTAACCCAAATAAGCACCTCT 59.464 41.667 0.00 0.00 0.00 3.69
1867 1915 5.099042 TCTAACCCAAATAAGCACCTCTC 57.901 43.478 0.00 0.00 0.00 3.20
1868 1916 2.808906 ACCCAAATAAGCACCTCTCC 57.191 50.000 0.00 0.00 0.00 3.71
1869 1917 1.992557 ACCCAAATAAGCACCTCTCCA 59.007 47.619 0.00 0.00 0.00 3.86
1870 1918 2.582636 ACCCAAATAAGCACCTCTCCAT 59.417 45.455 0.00 0.00 0.00 3.41
1871 1919 3.217626 CCCAAATAAGCACCTCTCCATC 58.782 50.000 0.00 0.00 0.00 3.51
1872 1920 2.874701 CCAAATAAGCACCTCTCCATCG 59.125 50.000 0.00 0.00 0.00 3.84
1873 1921 2.874701 CAAATAAGCACCTCTCCATCGG 59.125 50.000 0.00 0.00 0.00 4.18
1874 1922 1.051812 ATAAGCACCTCTCCATCGGG 58.948 55.000 0.00 0.00 0.00 5.14
1875 1923 0.032515 TAAGCACCTCTCCATCGGGA 60.033 55.000 0.00 0.00 42.29 5.14
1876 1924 0.692419 AAGCACCTCTCCATCGGGAT 60.692 55.000 0.00 0.00 43.91 3.85
1877 1925 0.188587 AGCACCTCTCCATCGGGATA 59.811 55.000 0.00 0.00 43.91 2.59
1878 1926 0.605589 GCACCTCTCCATCGGGATAG 59.394 60.000 0.00 0.00 43.91 2.08
1879 1927 2.002505 CACCTCTCCATCGGGATAGT 57.997 55.000 0.00 0.00 43.91 2.12
1880 1928 2.320781 CACCTCTCCATCGGGATAGTT 58.679 52.381 0.00 0.00 43.91 2.24
1881 1929 2.036475 CACCTCTCCATCGGGATAGTTG 59.964 54.545 0.00 0.00 43.91 3.16
1882 1930 1.620819 CCTCTCCATCGGGATAGTTGG 59.379 57.143 0.00 0.00 43.91 3.77
1883 1931 1.620819 CTCTCCATCGGGATAGTTGGG 59.379 57.143 0.00 0.00 43.91 4.12
1884 1932 1.062428 TCTCCATCGGGATAGTTGGGT 60.062 52.381 0.00 0.00 43.91 4.51
1885 1933 1.768870 CTCCATCGGGATAGTTGGGTT 59.231 52.381 0.00 0.00 43.91 4.11
1886 1934 2.969950 CTCCATCGGGATAGTTGGGTTA 59.030 50.000 0.00 0.00 43.91 2.85
1887 1935 2.969950 TCCATCGGGATAGTTGGGTTAG 59.030 50.000 0.00 0.00 38.64 2.34
1888 1936 2.969950 CCATCGGGATAGTTGGGTTAGA 59.030 50.000 0.00 0.00 35.59 2.10
1889 1937 3.583086 CCATCGGGATAGTTGGGTTAGAT 59.417 47.826 0.00 0.00 35.59 1.98
1890 1938 4.775780 CCATCGGGATAGTTGGGTTAGATA 59.224 45.833 0.00 0.00 35.59 1.98
1891 1939 5.105310 CCATCGGGATAGTTGGGTTAGATAG 60.105 48.000 0.00 0.00 35.59 2.08
1892 1940 5.329191 TCGGGATAGTTGGGTTAGATAGA 57.671 43.478 0.00 0.00 0.00 1.98
1893 1941 5.708544 TCGGGATAGTTGGGTTAGATAGAA 58.291 41.667 0.00 0.00 0.00 2.10
1894 1942 5.537674 TCGGGATAGTTGGGTTAGATAGAAC 59.462 44.000 0.00 0.00 0.00 3.01
1895 1943 5.539193 CGGGATAGTTGGGTTAGATAGAACT 59.461 44.000 0.00 0.00 0.00 3.01
1896 1944 6.718454 CGGGATAGTTGGGTTAGATAGAACTA 59.282 42.308 0.00 0.00 34.51 2.24
1897 1945 7.232127 CGGGATAGTTGGGTTAGATAGAACTAA 59.768 40.741 0.00 0.00 33.90 2.24
1898 1946 8.366401 GGGATAGTTGGGTTAGATAGAACTAAC 58.634 40.741 0.00 0.00 46.41 2.34
1909 1957 8.412456 GTTAGATAGAACTAACCCACTCTAACC 58.588 40.741 13.82 4.06 43.43 2.85
1910 1958 5.898397 AGATAGAACTAACCCACTCTAACCC 59.102 44.000 0.00 0.00 0.00 4.11
1911 1959 4.143406 AGAACTAACCCACTCTAACCCT 57.857 45.455 0.00 0.00 0.00 4.34
1912 1960 4.095211 AGAACTAACCCACTCTAACCCTC 58.905 47.826 0.00 0.00 0.00 4.30
1913 1961 2.830293 ACTAACCCACTCTAACCCTCC 58.170 52.381 0.00 0.00 0.00 4.30
1914 1962 2.117051 CTAACCCACTCTAACCCTCCC 58.883 57.143 0.00 0.00 0.00 4.30
1915 1963 0.496841 AACCCACTCTAACCCTCCCT 59.503 55.000 0.00 0.00 0.00 4.20
1916 1964 0.252742 ACCCACTCTAACCCTCCCTG 60.253 60.000 0.00 0.00 0.00 4.45
1917 1965 0.252742 CCCACTCTAACCCTCCCTGT 60.253 60.000 0.00 0.00 0.00 4.00
1918 1966 1.657804 CCACTCTAACCCTCCCTGTT 58.342 55.000 0.00 0.00 0.00 3.16
1919 1967 1.985895 CCACTCTAACCCTCCCTGTTT 59.014 52.381 0.00 0.00 0.00 2.83
1920 1968 2.290323 CCACTCTAACCCTCCCTGTTTG 60.290 54.545 0.00 0.00 0.00 2.93
1921 1969 1.985895 ACTCTAACCCTCCCTGTTTGG 59.014 52.381 0.00 0.00 0.00 3.28
1922 1970 2.266279 CTCTAACCCTCCCTGTTTGGA 58.734 52.381 0.00 0.00 38.35 3.53
1923 1971 2.846827 CTCTAACCCTCCCTGTTTGGAT 59.153 50.000 0.00 0.00 38.35 3.41
1924 1972 4.037927 CTCTAACCCTCCCTGTTTGGATA 58.962 47.826 0.00 0.00 38.35 2.59
1925 1973 3.778629 TCTAACCCTCCCTGTTTGGATAC 59.221 47.826 0.00 0.00 38.35 2.24
1926 1974 2.361085 ACCCTCCCTGTTTGGATACT 57.639 50.000 0.00 0.00 38.35 2.12
1927 1975 2.644151 ACCCTCCCTGTTTGGATACTT 58.356 47.619 0.00 0.00 38.35 2.24
1928 1976 2.993863 ACCCTCCCTGTTTGGATACTTT 59.006 45.455 0.00 0.00 38.35 2.66
1929 1977 3.401342 ACCCTCCCTGTTTGGATACTTTT 59.599 43.478 0.00 0.00 38.35 2.27
1930 1978 3.763897 CCCTCCCTGTTTGGATACTTTTG 59.236 47.826 0.00 0.00 38.35 2.44
1931 1979 3.763897 CCTCCCTGTTTGGATACTTTTGG 59.236 47.826 0.00 0.00 38.35 3.28
1932 1980 4.508405 CCTCCCTGTTTGGATACTTTTGGA 60.508 45.833 0.00 0.00 38.35 3.53
1933 1981 5.264395 CTCCCTGTTTGGATACTTTTGGAT 58.736 41.667 0.00 0.00 38.35 3.41
1934 1982 5.650283 TCCCTGTTTGGATACTTTTGGATT 58.350 37.500 0.00 0.00 38.35 3.01
1935 1983 6.795590 TCCCTGTTTGGATACTTTTGGATTA 58.204 36.000 0.00 0.00 38.35 1.75
1936 1984 7.418378 TCCCTGTTTGGATACTTTTGGATTAT 58.582 34.615 0.00 0.00 38.35 1.28
1937 1985 7.898636 TCCCTGTTTGGATACTTTTGGATTATT 59.101 33.333 0.00 0.00 38.35 1.40
1938 1986 8.539544 CCCTGTTTGGATACTTTTGGATTATTT 58.460 33.333 0.00 0.00 38.35 1.40
1939 1987 9.369904 CCTGTTTGGATACTTTTGGATTATTTG 57.630 33.333 0.00 0.00 38.35 2.32
1942 1990 9.087424 GTTTGGATACTTTTGGATTATTTGAGC 57.913 33.333 0.00 0.00 37.61 4.26
1943 1991 7.346751 TGGATACTTTTGGATTATTTGAGCC 57.653 36.000 0.00 0.00 37.61 4.70
1944 1992 7.125391 TGGATACTTTTGGATTATTTGAGCCT 58.875 34.615 0.00 0.00 37.61 4.58
1945 1993 7.285401 TGGATACTTTTGGATTATTTGAGCCTC 59.715 37.037 0.00 0.00 37.61 4.70
1946 1994 5.921962 ACTTTTGGATTATTTGAGCCTCC 57.078 39.130 0.00 0.00 0.00 4.30
1947 1995 5.332743 ACTTTTGGATTATTTGAGCCTCCA 58.667 37.500 0.00 0.00 34.27 3.86
1948 1996 5.779771 ACTTTTGGATTATTTGAGCCTCCAA 59.220 36.000 0.00 0.00 42.63 3.53
1949 1997 5.659440 TTTGGATTATTTGAGCCTCCAAC 57.341 39.130 1.97 0.00 43.67 3.77
1950 1998 4.591321 TGGATTATTTGAGCCTCCAACT 57.409 40.909 0.00 0.00 33.19 3.16
1951 1999 5.708736 TGGATTATTTGAGCCTCCAACTA 57.291 39.130 0.00 0.00 33.19 2.24
1952 2000 6.073447 TGGATTATTTGAGCCTCCAACTAA 57.927 37.500 0.00 0.00 33.19 2.24
1953 2001 5.885912 TGGATTATTTGAGCCTCCAACTAAC 59.114 40.000 0.00 0.00 33.19 2.34
1954 2002 5.299531 GGATTATTTGAGCCTCCAACTAACC 59.700 44.000 0.00 0.00 28.54 2.85
1955 2003 5.514500 TTATTTGAGCCTCCAACTAACCT 57.486 39.130 0.00 0.00 0.00 3.50
1956 2004 6.630203 TTATTTGAGCCTCCAACTAACCTA 57.370 37.500 0.00 0.00 0.00 3.08
1957 2005 4.986054 TTTGAGCCTCCAACTAACCTAA 57.014 40.909 0.00 0.00 0.00 2.69
1958 2006 4.986054 TTGAGCCTCCAACTAACCTAAA 57.014 40.909 0.00 0.00 0.00 1.85
1959 2007 4.281898 TGAGCCTCCAACTAACCTAAAC 57.718 45.455 0.00 0.00 0.00 2.01
1960 2008 3.908103 TGAGCCTCCAACTAACCTAAACT 59.092 43.478 0.00 0.00 0.00 2.66
1961 2009 5.088730 TGAGCCTCCAACTAACCTAAACTA 58.911 41.667 0.00 0.00 0.00 2.24
1962 2010 5.187186 TGAGCCTCCAACTAACCTAAACTAG 59.813 44.000 0.00 0.00 0.00 2.57
1963 2011 4.081031 AGCCTCCAACTAACCTAAACTAGC 60.081 45.833 0.00 0.00 0.00 3.42
1964 2012 4.767478 CCTCCAACTAACCTAAACTAGCC 58.233 47.826 0.00 0.00 0.00 3.93
1965 2013 4.470304 CCTCCAACTAACCTAAACTAGCCT 59.530 45.833 0.00 0.00 0.00 4.58
1966 2014 5.659971 CCTCCAACTAACCTAAACTAGCCTA 59.340 44.000 0.00 0.00 0.00 3.93
1967 2015 6.155737 CCTCCAACTAACCTAAACTAGCCTAA 59.844 42.308 0.00 0.00 0.00 2.69
1968 2016 6.939622 TCCAACTAACCTAAACTAGCCTAAC 58.060 40.000 0.00 0.00 0.00 2.34
1969 2017 6.070596 TCCAACTAACCTAAACTAGCCTAACC 60.071 42.308 0.00 0.00 0.00 2.85
1970 2018 5.946942 ACTAACCTAAACTAGCCTAACCC 57.053 43.478 0.00 0.00 0.00 4.11
1971 2019 4.718774 ACTAACCTAAACTAGCCTAACCCC 59.281 45.833 0.00 0.00 0.00 4.95
1972 2020 3.210098 ACCTAAACTAGCCTAACCCCA 57.790 47.619 0.00 0.00 0.00 4.96
1973 2021 3.744309 ACCTAAACTAGCCTAACCCCAT 58.256 45.455 0.00 0.00 0.00 4.00
1974 2022 3.458487 ACCTAAACTAGCCTAACCCCATG 59.542 47.826 0.00 0.00 0.00 3.66
1975 2023 3.714798 CCTAAACTAGCCTAACCCCATGA 59.285 47.826 0.00 0.00 0.00 3.07
1976 2024 4.351111 CCTAAACTAGCCTAACCCCATGAT 59.649 45.833 0.00 0.00 0.00 2.45
1977 2025 4.439253 AAACTAGCCTAACCCCATGATC 57.561 45.455 0.00 0.00 0.00 2.92
1978 2026 2.339769 ACTAGCCTAACCCCATGATCC 58.660 52.381 0.00 0.00 0.00 3.36
1979 2027 2.338809 CTAGCCTAACCCCATGATCCA 58.661 52.381 0.00 0.00 0.00 3.41
1980 2028 1.607225 AGCCTAACCCCATGATCCAA 58.393 50.000 0.00 0.00 0.00 3.53
1981 2029 1.929494 AGCCTAACCCCATGATCCAAA 59.071 47.619 0.00 0.00 0.00 3.28
1982 2030 2.031870 GCCTAACCCCATGATCCAAAC 58.968 52.381 0.00 0.00 0.00 2.93
1983 2031 2.622977 GCCTAACCCCATGATCCAAACA 60.623 50.000 0.00 0.00 0.00 2.83
1984 2032 3.290710 CCTAACCCCATGATCCAAACAG 58.709 50.000 0.00 0.00 0.00 3.16
1985 2033 2.236489 AACCCCATGATCCAAACAGG 57.764 50.000 0.00 0.00 39.47 4.00
1986 2034 0.336048 ACCCCATGATCCAAACAGGG 59.664 55.000 0.00 0.00 38.67 4.45
1987 2035 1.044790 CCCCATGATCCAAACAGGGC 61.045 60.000 0.00 0.00 37.79 5.19
1988 2036 1.044790 CCCATGATCCAAACAGGGCC 61.045 60.000 0.00 0.00 37.79 5.80
1989 2037 0.324552 CCATGATCCAAACAGGGCCA 60.325 55.000 6.18 0.00 38.24 5.36
1990 2038 1.690209 CCATGATCCAAACAGGGCCAT 60.690 52.381 6.18 0.00 38.24 4.40
1991 2039 1.411246 CATGATCCAAACAGGGCCATG 59.589 52.381 17.55 17.55 39.43 3.66
1992 2040 0.324552 TGATCCAAACAGGGCCATGG 60.325 55.000 23.35 7.63 38.24 3.66
1993 2041 1.679559 GATCCAAACAGGGCCATGGC 61.680 60.000 29.47 29.47 38.24 4.40
1994 2042 2.172229 ATCCAAACAGGGCCATGGCT 62.172 55.000 34.70 15.14 41.60 4.75
2226 2277 5.233263 GCCAACACAAGCTTTTTCGATAAAA 59.767 36.000 0.00 4.43 32.75 1.52
2290 2341 3.678072 ACACATGTATGCGTACAAGACAC 59.322 43.478 24.07 0.00 43.60 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.517609 GTACATGAAGTTTTAGTCGTCAGATAT 57.482 33.333 0.00 0.00 0.00 1.63
2 3 8.737175 AGTACATGAAGTTTTAGTCGTCAGATA 58.263 33.333 0.00 0.00 0.00 1.98
3 4 7.603651 AGTACATGAAGTTTTAGTCGTCAGAT 58.396 34.615 0.00 0.00 0.00 2.90
4 5 6.978338 AGTACATGAAGTTTTAGTCGTCAGA 58.022 36.000 0.00 0.00 0.00 3.27
5 6 6.308282 GGAGTACATGAAGTTTTAGTCGTCAG 59.692 42.308 0.00 0.00 0.00 3.51
6 7 6.015688 AGGAGTACATGAAGTTTTAGTCGTCA 60.016 38.462 0.00 0.00 0.00 4.35
7 8 6.388278 AGGAGTACATGAAGTTTTAGTCGTC 58.612 40.000 0.00 0.00 0.00 4.20
8 9 6.342338 AGGAGTACATGAAGTTTTAGTCGT 57.658 37.500 0.00 0.00 0.00 4.34
9 10 6.468319 CGTAGGAGTACATGAAGTTTTAGTCG 59.532 42.308 0.00 0.00 0.00 4.18
10 11 7.311408 ACGTAGGAGTACATGAAGTTTTAGTC 58.689 38.462 0.00 0.00 0.00 2.59
11 12 7.224522 ACGTAGGAGTACATGAAGTTTTAGT 57.775 36.000 0.00 0.00 0.00 2.24
14 15 8.964772 AGTATACGTAGGAGTACATGAAGTTTT 58.035 33.333 0.00 0.00 0.00 2.43
15 16 8.517062 AGTATACGTAGGAGTACATGAAGTTT 57.483 34.615 0.00 0.00 0.00 2.66
16 17 8.517062 AAGTATACGTAGGAGTACATGAAGTT 57.483 34.615 0.00 0.00 0.00 2.66
17 18 7.992033 AGAAGTATACGTAGGAGTACATGAAGT 59.008 37.037 0.00 0.00 0.00 3.01
18 19 8.380743 AGAAGTATACGTAGGAGTACATGAAG 57.619 38.462 0.00 0.00 0.00 3.02
19 20 7.170489 CGAGAAGTATACGTAGGAGTACATGAA 59.830 40.741 0.00 0.00 0.00 2.57
20 21 6.644181 CGAGAAGTATACGTAGGAGTACATGA 59.356 42.308 0.00 0.00 0.00 3.07
21 22 6.128607 CCGAGAAGTATACGTAGGAGTACATG 60.129 46.154 0.08 0.00 0.00 3.21
22 23 5.931146 CCGAGAAGTATACGTAGGAGTACAT 59.069 44.000 0.08 0.00 0.00 2.29
23 24 5.163405 ACCGAGAAGTATACGTAGGAGTACA 60.163 44.000 0.08 0.00 0.00 2.90
24 25 5.293560 ACCGAGAAGTATACGTAGGAGTAC 58.706 45.833 0.08 0.00 0.00 2.73
25 26 5.069119 TGACCGAGAAGTATACGTAGGAGTA 59.931 44.000 0.08 0.00 0.00 2.59
26 27 4.141846 TGACCGAGAAGTATACGTAGGAGT 60.142 45.833 0.08 2.52 0.00 3.85
27 28 4.375272 TGACCGAGAAGTATACGTAGGAG 58.625 47.826 0.08 0.00 0.00 3.69
28 29 4.406648 TGACCGAGAAGTATACGTAGGA 57.593 45.455 0.08 0.00 0.00 2.94
29 30 5.450171 CAATGACCGAGAAGTATACGTAGG 58.550 45.833 0.08 2.06 0.00 3.18
30 31 4.910456 GCAATGACCGAGAAGTATACGTAG 59.090 45.833 0.08 0.00 0.00 3.51
31 32 4.336153 TGCAATGACCGAGAAGTATACGTA 59.664 41.667 0.00 0.00 0.00 3.57
32 33 3.129813 TGCAATGACCGAGAAGTATACGT 59.870 43.478 0.00 0.00 0.00 3.57
33 34 3.702330 TGCAATGACCGAGAAGTATACG 58.298 45.455 0.00 0.00 0.00 3.06
34 35 5.050091 CCAATGCAATGACCGAGAAGTATAC 60.050 44.000 2.50 0.00 0.00 1.47
35 36 5.056480 CCAATGCAATGACCGAGAAGTATA 58.944 41.667 2.50 0.00 0.00 1.47
36 37 3.879295 CCAATGCAATGACCGAGAAGTAT 59.121 43.478 2.50 0.00 0.00 2.12
37 38 3.270027 CCAATGCAATGACCGAGAAGTA 58.730 45.455 2.50 0.00 0.00 2.24
38 39 2.086869 CCAATGCAATGACCGAGAAGT 58.913 47.619 2.50 0.00 0.00 3.01
39 40 2.086869 ACCAATGCAATGACCGAGAAG 58.913 47.619 2.50 0.00 0.00 2.85
40 41 2.083774 GACCAATGCAATGACCGAGAA 58.916 47.619 2.50 0.00 0.00 2.87
41 42 1.003003 TGACCAATGCAATGACCGAGA 59.997 47.619 2.50 0.00 0.00 4.04
42 43 1.131126 GTGACCAATGCAATGACCGAG 59.869 52.381 2.50 0.00 0.00 4.63
43 44 1.164411 GTGACCAATGCAATGACCGA 58.836 50.000 2.50 0.00 0.00 4.69
44 45 0.171007 GGTGACCAATGCAATGACCG 59.829 55.000 2.50 0.00 0.00 4.79
45 46 1.549203 AGGTGACCAATGCAATGACC 58.451 50.000 3.63 3.06 0.00 4.02
46 47 3.758554 ACTTAGGTGACCAATGCAATGAC 59.241 43.478 3.63 0.00 0.00 3.06
47 48 4.009675 GACTTAGGTGACCAATGCAATGA 58.990 43.478 3.63 0.00 0.00 2.57
48 49 4.012374 AGACTTAGGTGACCAATGCAATG 58.988 43.478 3.63 0.00 0.00 2.82
49 50 4.012374 CAGACTTAGGTGACCAATGCAAT 58.988 43.478 3.63 0.00 0.00 3.56
58 59 3.319137 TGCATCACAGACTTAGGTGAC 57.681 47.619 0.00 0.00 45.84 3.67
70 75 3.037992 GCGTTCGGCATGCATCACA 62.038 57.895 21.36 0.00 42.87 3.58
101 106 5.091261 AGTTATAGCAACTTGTCAGGGAG 57.909 43.478 0.00 0.00 0.00 4.30
106 113 7.025365 CGTACAGTAGTTATAGCAACTTGTCA 58.975 38.462 0.00 0.00 0.00 3.58
109 116 5.052567 CGCGTACAGTAGTTATAGCAACTTG 60.053 44.000 0.00 0.00 0.00 3.16
112 119 4.346129 ACGCGTACAGTAGTTATAGCAAC 58.654 43.478 11.67 0.00 0.00 4.17
127 134 2.202570 ATCACAGGCGACGCGTAC 60.203 61.111 13.97 7.62 0.00 3.67
133 140 3.127533 GGGTGCATCACAGGCGAC 61.128 66.667 0.00 0.00 35.86 5.19
151 158 6.980593 TGTGATGTTTAAGGATTGAGTTTGG 58.019 36.000 0.00 0.00 0.00 3.28
152 159 7.115378 GCTTGTGATGTTTAAGGATTGAGTTTG 59.885 37.037 0.00 0.00 0.00 2.93
161 170 5.239306 CACTCAAGCTTGTGATGTTTAAGGA 59.761 40.000 29.78 5.61 36.38 3.36
185 194 5.357878 TGCCAAAGTGGATTGATCAATAGAC 59.642 40.000 20.75 18.22 40.96 2.59
188 197 5.008911 CGATGCCAAAGTGGATTGATCAATA 59.991 40.000 20.75 3.80 40.96 1.90
191 200 2.684374 CGATGCCAAAGTGGATTGATCA 59.316 45.455 0.00 0.00 40.96 2.92
193 202 2.684881 GTCGATGCCAAAGTGGATTGAT 59.315 45.455 0.00 0.00 40.96 2.57
264 275 4.021925 GGTGCCGGTGGAGAGCTT 62.022 66.667 1.90 0.00 0.00 3.74
308 319 1.205655 TCGATTCTGAGCAAGTGGGAG 59.794 52.381 0.00 0.00 0.00 4.30
312 323 0.994995 CCGTCGATTCTGAGCAAGTG 59.005 55.000 0.00 0.00 0.00 3.16
323 334 1.667830 CAGTGTGCACCCGTCGATT 60.668 57.895 15.69 0.00 0.00 3.34
399 410 2.076863 GTAGCACTTGATTCGCCAGTT 58.923 47.619 0.00 0.00 0.00 3.16
407 418 1.674817 CCGTTCGGGTAGCACTTGATT 60.675 52.381 3.04 0.00 0.00 2.57
429 440 0.672401 CAGCCGTCGTAACCCATGTT 60.672 55.000 0.00 0.00 38.52 2.71
431 442 1.813753 CCAGCCGTCGTAACCCATG 60.814 63.158 0.00 0.00 0.00 3.66
433 444 4.382320 GCCAGCCGTCGTAACCCA 62.382 66.667 0.00 0.00 0.00 4.51
462 473 3.716539 TATGGCTGGCGTGCTCGAC 62.717 63.158 13.13 10.23 46.54 4.20
499 510 0.585357 GCTCATGCAGATACAAGCCG 59.415 55.000 0.00 0.00 39.41 5.52
510 521 4.962089 CGTGGTCGAGTATGCTCATGCA 62.962 54.545 11.58 0.00 46.16 3.96
560 571 2.898840 ATGGCTTCGGCTGCGATG 60.899 61.111 0.00 0.00 41.44 3.84
562 573 3.899981 AACATGGCTTCGGCTGCGA 62.900 57.895 0.00 0.00 41.44 5.10
565 576 2.703798 CCCAACATGGCTTCGGCTG 61.704 63.158 0.00 0.00 41.44 4.85
574 585 2.745255 TTTCCCCAGCCCCAACATGG 62.745 60.000 0.00 0.00 37.25 3.66
576 587 1.229177 GTTTCCCCAGCCCCAACAT 60.229 57.895 0.00 0.00 0.00 2.71
579 590 1.155155 GAAGTTTCCCCAGCCCCAA 59.845 57.895 0.00 0.00 0.00 4.12
580 591 2.851045 GAAGTTTCCCCAGCCCCA 59.149 61.111 0.00 0.00 0.00 4.96
629 666 1.148310 CACGCCGTCATCTTTGAACT 58.852 50.000 0.00 0.00 32.48 3.01
673 713 3.036084 GGTGGTGTGCACGTCGAG 61.036 66.667 13.13 0.00 0.00 4.04
674 714 4.934942 CGGTGGTGTGCACGTCGA 62.935 66.667 13.13 2.33 0.00 4.20
679 719 1.666872 GGTAGTCGGTGGTGTGCAC 60.667 63.158 10.75 10.75 0.00 4.57
680 720 2.738480 GGTAGTCGGTGGTGTGCA 59.262 61.111 0.00 0.00 0.00 4.57
683 723 4.047059 CGCGGTAGTCGGTGGTGT 62.047 66.667 0.00 0.00 39.69 4.16
705 745 0.528466 CCGTGGATGTCGATGTGAGG 60.528 60.000 0.00 0.00 0.00 3.86
711 751 1.731433 CGGTACCCGTGGATGTCGAT 61.731 60.000 6.25 0.00 42.73 3.59
712 752 2.409055 CGGTACCCGTGGATGTCGA 61.409 63.158 6.25 0.00 42.73 4.20
713 753 2.103538 CGGTACCCGTGGATGTCG 59.896 66.667 6.25 0.00 42.73 4.35
911 951 3.630148 CATCCATGCCGTCGACGC 61.630 66.667 31.73 25.31 38.18 5.19
960 1000 2.202570 GTCAGCGCGTCCGTGTAT 60.203 61.111 8.43 0.00 36.67 2.29
1022 1062 2.436115 GCTTGTACCTGTCCGCCC 60.436 66.667 0.00 0.00 0.00 6.13
1206 1249 2.431601 AGCTGCTCGAAGTCACGC 60.432 61.111 0.00 0.00 0.00 5.34
1207 1250 0.664466 TTCAGCTGCTCGAAGTCACG 60.664 55.000 9.47 0.00 0.00 4.35
1212 1255 1.075425 CCGTCTTCAGCTGCTCGAAG 61.075 60.000 23.80 23.80 40.02 3.79
1215 1258 2.507992 CCCGTCTTCAGCTGCTCG 60.508 66.667 9.47 10.35 0.00 5.03
1248 1291 0.935898 GCTTCATGACGAGCTCCATG 59.064 55.000 20.78 20.78 40.97 3.66
1339 1382 1.328069 AGCGACGAGAACTCATACGAG 59.672 52.381 0.00 0.00 45.49 4.18
1340 1383 1.366679 AGCGACGAGAACTCATACGA 58.633 50.000 0.00 0.00 0.00 3.43
1341 1384 2.893837 CTAGCGACGAGAACTCATACG 58.106 52.381 0.00 5.57 0.00 3.06
1342 1385 2.031807 TGCTAGCGACGAGAACTCATAC 59.968 50.000 10.77 0.00 0.00 2.39
1343 1386 2.285977 TGCTAGCGACGAGAACTCATA 58.714 47.619 10.77 0.00 0.00 2.15
1344 1387 1.095600 TGCTAGCGACGAGAACTCAT 58.904 50.000 10.77 0.00 0.00 2.90
1345 1388 0.879090 TTGCTAGCGACGAGAACTCA 59.121 50.000 10.77 0.00 0.00 3.41
1346 1389 1.130749 TCTTGCTAGCGACGAGAACTC 59.869 52.381 10.77 0.00 0.00 3.01
1347 1390 1.166129 TCTTGCTAGCGACGAGAACT 58.834 50.000 10.77 0.00 0.00 3.01
1348 1391 1.849219 CATCTTGCTAGCGACGAGAAC 59.151 52.381 10.77 0.00 31.37 3.01
1349 1392 1.799181 GCATCTTGCTAGCGACGAGAA 60.799 52.381 10.77 0.00 40.96 2.87
1350 1393 0.248661 GCATCTTGCTAGCGACGAGA 60.249 55.000 10.77 10.84 40.96 4.04
1351 1394 0.526310 TGCATCTTGCTAGCGACGAG 60.526 55.000 10.77 5.62 45.31 4.18
1352 1395 0.103026 ATGCATCTTGCTAGCGACGA 59.897 50.000 10.77 8.26 45.31 4.20
1353 1396 0.231534 CATGCATCTTGCTAGCGACG 59.768 55.000 10.77 2.80 45.31 5.12
1354 1397 1.575244 TCATGCATCTTGCTAGCGAC 58.425 50.000 10.77 0.00 45.31 5.19
1355 1398 2.538512 ATCATGCATCTTGCTAGCGA 57.461 45.000 10.77 7.48 45.31 4.93
1356 1399 3.552541 GAAATCATGCATCTTGCTAGCG 58.447 45.455 10.77 0.00 45.31 4.26
1357 1400 3.317149 TGGAAATCATGCATCTTGCTAGC 59.683 43.478 8.10 8.10 45.31 3.42
1358 1401 4.579340 AGTGGAAATCATGCATCTTGCTAG 59.421 41.667 0.00 0.00 45.31 3.42
1359 1402 4.529897 AGTGGAAATCATGCATCTTGCTA 58.470 39.130 0.00 0.00 45.31 3.49
1360 1403 3.362706 AGTGGAAATCATGCATCTTGCT 58.637 40.909 0.00 0.00 45.31 3.91
1361 1404 3.795623 AGTGGAAATCATGCATCTTGC 57.204 42.857 0.00 0.00 45.29 4.01
1362 1405 6.160684 TGAAAAGTGGAAATCATGCATCTTG 58.839 36.000 0.00 0.00 0.00 3.02
1363 1406 6.349243 TGAAAAGTGGAAATCATGCATCTT 57.651 33.333 0.00 0.00 0.00 2.40
1364 1407 5.988310 TGAAAAGTGGAAATCATGCATCT 57.012 34.783 0.00 0.00 0.00 2.90
1365 1408 6.642683 CTTGAAAAGTGGAAATCATGCATC 57.357 37.500 0.00 0.00 39.70 3.91
1381 1424 5.355630 TCGGATGTCTGTTGAAACTTGAAAA 59.644 36.000 0.00 0.00 0.00 2.29
1382 1425 4.878971 TCGGATGTCTGTTGAAACTTGAAA 59.121 37.500 0.00 0.00 0.00 2.69
1383 1426 4.447290 TCGGATGTCTGTTGAAACTTGAA 58.553 39.130 0.00 0.00 0.00 2.69
1384 1427 4.058124 CTCGGATGTCTGTTGAAACTTGA 58.942 43.478 0.00 0.00 0.00 3.02
1385 1428 3.809832 ACTCGGATGTCTGTTGAAACTTG 59.190 43.478 0.00 0.00 0.00 3.16
1386 1429 4.073293 ACTCGGATGTCTGTTGAAACTT 57.927 40.909 0.00 0.00 0.00 2.66
1387 1430 3.753294 ACTCGGATGTCTGTTGAAACT 57.247 42.857 0.00 0.00 0.00 2.66
1388 1431 4.058817 AGAACTCGGATGTCTGTTGAAAC 58.941 43.478 0.00 0.00 0.00 2.78
1389 1432 4.058124 CAGAACTCGGATGTCTGTTGAAA 58.942 43.478 8.99 0.00 0.00 2.69
1390 1433 3.320826 TCAGAACTCGGATGTCTGTTGAA 59.679 43.478 14.30 0.00 0.00 2.69
1391 1434 2.890945 TCAGAACTCGGATGTCTGTTGA 59.109 45.455 14.30 0.00 0.00 3.18
1392 1435 3.303881 TCAGAACTCGGATGTCTGTTG 57.696 47.619 14.30 0.00 0.00 3.33
1393 1436 4.336889 TTTCAGAACTCGGATGTCTGTT 57.663 40.909 14.30 0.00 0.00 3.16
1394 1437 4.039245 TCTTTTCAGAACTCGGATGTCTGT 59.961 41.667 14.30 0.00 0.00 3.41
1395 1438 4.387256 GTCTTTTCAGAACTCGGATGTCTG 59.613 45.833 10.36 10.36 0.00 3.51
1396 1439 4.282195 AGTCTTTTCAGAACTCGGATGTCT 59.718 41.667 0.00 0.00 0.00 3.41
1397 1440 4.561105 AGTCTTTTCAGAACTCGGATGTC 58.439 43.478 0.00 0.00 0.00 3.06
1398 1441 4.608948 AGTCTTTTCAGAACTCGGATGT 57.391 40.909 0.00 0.00 0.00 3.06
1399 1442 8.879342 ATAATAGTCTTTTCAGAACTCGGATG 57.121 34.615 0.00 0.00 0.00 3.51
1426 1469 9.107177 CTCTCATGAATTAAAGCTTGTCTACAT 57.893 33.333 0.00 1.33 0.00 2.29
1427 1470 8.314021 TCTCTCATGAATTAAAGCTTGTCTACA 58.686 33.333 0.00 0.00 0.00 2.74
1428 1471 8.709386 TCTCTCATGAATTAAAGCTTGTCTAC 57.291 34.615 0.00 0.00 0.00 2.59
1429 1472 9.896645 ATTCTCTCATGAATTAAAGCTTGTCTA 57.103 29.630 0.00 0.00 33.33 2.59
1430 1473 8.804912 ATTCTCTCATGAATTAAAGCTTGTCT 57.195 30.769 0.00 0.00 33.33 3.41
1431 1474 9.500864 GAATTCTCTCATGAATTAAAGCTTGTC 57.499 33.333 0.00 0.00 43.97 3.18
1432 1475 8.465201 GGAATTCTCTCATGAATTAAAGCTTGT 58.535 33.333 0.00 0.00 43.97 3.16
1433 1476 8.684520 AGGAATTCTCTCATGAATTAAAGCTTG 58.315 33.333 0.00 0.00 43.97 4.01
1434 1477 8.820153 AGGAATTCTCTCATGAATTAAAGCTT 57.180 30.769 5.23 0.00 43.97 3.74
1435 1478 8.820153 AAGGAATTCTCTCATGAATTAAAGCT 57.180 30.769 5.23 0.00 43.97 3.74
1570 1616 8.695284 GTGTCATTTAACATTGTTCGCATAAAA 58.305 29.630 5.07 0.58 0.00 1.52
1647 1693 3.838565 TCACCCTTAAATTGGACAGCAA 58.161 40.909 0.00 0.00 0.00 3.91
1668 1714 7.122650 CCATTCTGTTACACTAACCATGGATTT 59.877 37.037 21.47 5.69 39.60 2.17
1792 1840 3.939592 GTGTTAGAGTATCCAAACAGGGC 59.060 47.826 0.00 0.00 40.68 5.19
1794 1842 5.794894 ACTGTGTTAGAGTATCCAAACAGG 58.205 41.667 0.00 0.00 40.68 4.00
1795 1843 8.304596 TCTAACTGTGTTAGAGTATCCAAACAG 58.695 37.037 14.02 0.00 40.68 3.16
1796 1844 8.185506 TCTAACTGTGTTAGAGTATCCAAACA 57.814 34.615 14.02 0.00 38.63 2.83
1797 1845 8.690680 CTCTAACTGTGTTAGAGTATCCAAAC 57.309 38.462 26.67 0.00 41.73 2.93
1825 1873 8.319881 GGTTAGAGTGGGTTAGAAAATAACTCT 58.680 37.037 7.50 7.50 43.79 3.24
1826 1874 7.551974 GGGTTAGAGTGGGTTAGAAAATAACTC 59.448 40.741 0.00 0.00 34.21 3.01
1827 1875 7.017850 TGGGTTAGAGTGGGTTAGAAAATAACT 59.982 37.037 0.00 0.00 0.00 2.24
1828 1876 7.170277 TGGGTTAGAGTGGGTTAGAAAATAAC 58.830 38.462 0.00 0.00 0.00 1.89
1829 1877 7.332433 TGGGTTAGAGTGGGTTAGAAAATAA 57.668 36.000 0.00 0.00 0.00 1.40
1830 1878 6.956102 TGGGTTAGAGTGGGTTAGAAAATA 57.044 37.500 0.00 0.00 0.00 1.40
1831 1879 5.853572 TGGGTTAGAGTGGGTTAGAAAAT 57.146 39.130 0.00 0.00 0.00 1.82
1832 1880 5.649970 TTGGGTTAGAGTGGGTTAGAAAA 57.350 39.130 0.00 0.00 0.00 2.29
1833 1881 5.649970 TTTGGGTTAGAGTGGGTTAGAAA 57.350 39.130 0.00 0.00 0.00 2.52
1834 1882 5.853572 ATTTGGGTTAGAGTGGGTTAGAA 57.146 39.130 0.00 0.00 0.00 2.10
1835 1883 6.577638 GCTTATTTGGGTTAGAGTGGGTTAGA 60.578 42.308 0.00 0.00 0.00 2.10
1836 1884 5.589050 GCTTATTTGGGTTAGAGTGGGTTAG 59.411 44.000 0.00 0.00 0.00 2.34
1837 1885 5.014333 TGCTTATTTGGGTTAGAGTGGGTTA 59.986 40.000 0.00 0.00 0.00 2.85
1838 1886 4.202631 TGCTTATTTGGGTTAGAGTGGGTT 60.203 41.667 0.00 0.00 0.00 4.11
1839 1887 3.332485 TGCTTATTTGGGTTAGAGTGGGT 59.668 43.478 0.00 0.00 0.00 4.51
1840 1888 3.694566 GTGCTTATTTGGGTTAGAGTGGG 59.305 47.826 0.00 0.00 0.00 4.61
1841 1889 3.694566 GGTGCTTATTTGGGTTAGAGTGG 59.305 47.826 0.00 0.00 0.00 4.00
1842 1890 4.589908 AGGTGCTTATTTGGGTTAGAGTG 58.410 43.478 0.00 0.00 0.00 3.51
1843 1891 4.536489 AGAGGTGCTTATTTGGGTTAGAGT 59.464 41.667 0.00 0.00 0.00 3.24
1844 1892 5.104259 AGAGGTGCTTATTTGGGTTAGAG 57.896 43.478 0.00 0.00 0.00 2.43
1845 1893 4.080526 GGAGAGGTGCTTATTTGGGTTAGA 60.081 45.833 0.00 0.00 0.00 2.10
1846 1894 4.200092 GGAGAGGTGCTTATTTGGGTTAG 58.800 47.826 0.00 0.00 0.00 2.34
1847 1895 3.589735 TGGAGAGGTGCTTATTTGGGTTA 59.410 43.478 0.00 0.00 0.00 2.85
1848 1896 2.378547 TGGAGAGGTGCTTATTTGGGTT 59.621 45.455 0.00 0.00 0.00 4.11
1849 1897 1.992557 TGGAGAGGTGCTTATTTGGGT 59.007 47.619 0.00 0.00 0.00 4.51
1850 1898 2.806945 TGGAGAGGTGCTTATTTGGG 57.193 50.000 0.00 0.00 0.00 4.12
1851 1899 2.874701 CGATGGAGAGGTGCTTATTTGG 59.125 50.000 0.00 0.00 0.00 3.28
1852 1900 2.874701 CCGATGGAGAGGTGCTTATTTG 59.125 50.000 0.00 0.00 0.00 2.32
1853 1901 2.158755 CCCGATGGAGAGGTGCTTATTT 60.159 50.000 0.00 0.00 0.00 1.40
1854 1902 1.417890 CCCGATGGAGAGGTGCTTATT 59.582 52.381 0.00 0.00 0.00 1.40
1855 1903 1.051812 CCCGATGGAGAGGTGCTTAT 58.948 55.000 0.00 0.00 0.00 1.73
1856 1904 0.032515 TCCCGATGGAGAGGTGCTTA 60.033 55.000 0.00 0.00 35.03 3.09
1857 1905 0.692419 ATCCCGATGGAGAGGTGCTT 60.692 55.000 0.00 0.00 46.08 3.91
1858 1906 0.188587 TATCCCGATGGAGAGGTGCT 59.811 55.000 0.00 0.00 46.08 4.40
1859 1907 0.605589 CTATCCCGATGGAGAGGTGC 59.394 60.000 0.00 0.00 44.71 5.01
1864 1912 1.062428 ACCCAACTATCCCGATGGAGA 60.062 52.381 0.00 0.00 46.08 3.71
1865 1913 1.424638 ACCCAACTATCCCGATGGAG 58.575 55.000 0.00 0.00 46.08 3.86
1867 1915 2.969950 TCTAACCCAACTATCCCGATGG 59.030 50.000 0.00 0.00 0.00 3.51
1868 1916 4.891992 ATCTAACCCAACTATCCCGATG 57.108 45.455 0.00 0.00 0.00 3.84
1869 1917 5.900437 TCTATCTAACCCAACTATCCCGAT 58.100 41.667 0.00 0.00 0.00 4.18
1870 1918 5.329191 TCTATCTAACCCAACTATCCCGA 57.671 43.478 0.00 0.00 0.00 5.14
1871 1919 5.539193 AGTTCTATCTAACCCAACTATCCCG 59.461 44.000 0.00 0.00 0.00 5.14
1872 1920 6.997942 AGTTCTATCTAACCCAACTATCCC 57.002 41.667 0.00 0.00 0.00 3.85
1883 1931 8.412456 GGTTAGAGTGGGTTAGTTCTATCTAAC 58.588 40.741 11.46 11.46 45.03 2.34
1884 1932 7.562821 GGGTTAGAGTGGGTTAGTTCTATCTAA 59.437 40.741 0.00 0.00 0.00 2.10
1885 1933 7.065504 GGGTTAGAGTGGGTTAGTTCTATCTA 58.934 42.308 0.00 0.00 0.00 1.98
1886 1934 5.898397 GGGTTAGAGTGGGTTAGTTCTATCT 59.102 44.000 0.00 0.00 0.00 1.98
1887 1935 5.898397 AGGGTTAGAGTGGGTTAGTTCTATC 59.102 44.000 0.00 0.00 0.00 2.08
1888 1936 5.851418 AGGGTTAGAGTGGGTTAGTTCTAT 58.149 41.667 0.00 0.00 0.00 1.98
1889 1937 5.267587 GAGGGTTAGAGTGGGTTAGTTCTA 58.732 45.833 0.00 0.00 0.00 2.10
1890 1938 4.095211 GAGGGTTAGAGTGGGTTAGTTCT 58.905 47.826 0.00 0.00 0.00 3.01
1891 1939 3.197333 GGAGGGTTAGAGTGGGTTAGTTC 59.803 52.174 0.00 0.00 0.00 3.01
1892 1940 3.179685 GGAGGGTTAGAGTGGGTTAGTT 58.820 50.000 0.00 0.00 0.00 2.24
1893 1941 2.561526 GGGAGGGTTAGAGTGGGTTAGT 60.562 54.545 0.00 0.00 0.00 2.24
1894 1942 2.117051 GGGAGGGTTAGAGTGGGTTAG 58.883 57.143 0.00 0.00 0.00 2.34
1895 1943 1.726352 AGGGAGGGTTAGAGTGGGTTA 59.274 52.381 0.00 0.00 0.00 2.85
1896 1944 0.496841 AGGGAGGGTTAGAGTGGGTT 59.503 55.000 0.00 0.00 0.00 4.11
1897 1945 0.252742 CAGGGAGGGTTAGAGTGGGT 60.253 60.000 0.00 0.00 0.00 4.51
1898 1946 0.252742 ACAGGGAGGGTTAGAGTGGG 60.253 60.000 0.00 0.00 0.00 4.61
1899 1947 1.657804 AACAGGGAGGGTTAGAGTGG 58.342 55.000 0.00 0.00 0.00 4.00
1900 1948 2.290323 CCAAACAGGGAGGGTTAGAGTG 60.290 54.545 0.00 0.00 0.00 3.51
1901 1949 1.985895 CCAAACAGGGAGGGTTAGAGT 59.014 52.381 0.00 0.00 0.00 3.24
1902 1950 2.266279 TCCAAACAGGGAGGGTTAGAG 58.734 52.381 0.00 0.00 38.24 2.43
1903 1951 2.426431 TCCAAACAGGGAGGGTTAGA 57.574 50.000 0.00 0.00 38.24 2.10
1904 1952 3.780850 AGTATCCAAACAGGGAGGGTTAG 59.219 47.826 0.00 0.00 41.08 2.34
1905 1953 3.810623 AGTATCCAAACAGGGAGGGTTA 58.189 45.455 0.00 0.00 41.08 2.85
1906 1954 2.644151 AGTATCCAAACAGGGAGGGTT 58.356 47.619 0.00 0.00 41.08 4.11
1907 1955 2.361085 AGTATCCAAACAGGGAGGGT 57.639 50.000 0.00 0.00 41.08 4.34
1908 1956 3.739401 AAAGTATCCAAACAGGGAGGG 57.261 47.619 0.00 0.00 41.08 4.30
1909 1957 3.763897 CCAAAAGTATCCAAACAGGGAGG 59.236 47.826 0.00 0.00 41.08 4.30
1910 1958 4.662278 TCCAAAAGTATCCAAACAGGGAG 58.338 43.478 0.00 0.00 41.08 4.30
1911 1959 4.733077 TCCAAAAGTATCCAAACAGGGA 57.267 40.909 0.00 0.00 42.21 4.20
1912 1960 7.660030 ATAATCCAAAAGTATCCAAACAGGG 57.340 36.000 0.00 0.00 38.24 4.45
1913 1961 9.369904 CAAATAATCCAAAAGTATCCAAACAGG 57.630 33.333 0.00 0.00 39.47 4.00
1916 1964 9.087424 GCTCAAATAATCCAAAAGTATCCAAAC 57.913 33.333 0.00 0.00 0.00 2.93
1917 1965 8.257306 GGCTCAAATAATCCAAAAGTATCCAAA 58.743 33.333 0.00 0.00 0.00 3.28
1918 1966 7.619302 AGGCTCAAATAATCCAAAAGTATCCAA 59.381 33.333 0.00 0.00 0.00 3.53
1919 1967 7.125391 AGGCTCAAATAATCCAAAAGTATCCA 58.875 34.615 0.00 0.00 0.00 3.41
1920 1968 7.255625 GGAGGCTCAAATAATCCAAAAGTATCC 60.256 40.741 17.69 0.00 0.00 2.59
1921 1969 7.285401 TGGAGGCTCAAATAATCCAAAAGTATC 59.715 37.037 17.69 0.00 37.12 2.24
1922 1970 7.125391 TGGAGGCTCAAATAATCCAAAAGTAT 58.875 34.615 17.69 0.00 37.12 2.12
1923 1971 6.489603 TGGAGGCTCAAATAATCCAAAAGTA 58.510 36.000 17.69 0.00 37.12 2.24
1924 1972 5.332743 TGGAGGCTCAAATAATCCAAAAGT 58.667 37.500 17.69 0.00 37.12 2.66
1925 1973 5.920193 TGGAGGCTCAAATAATCCAAAAG 57.080 39.130 17.69 0.00 37.12 2.27
1928 1976 4.934356 AGTTGGAGGCTCAAATAATCCAA 58.066 39.130 17.69 6.66 45.38 3.53
1929 1977 4.591321 AGTTGGAGGCTCAAATAATCCA 57.409 40.909 17.69 0.00 38.26 3.41
1930 1978 5.299531 GGTTAGTTGGAGGCTCAAATAATCC 59.700 44.000 17.69 15.35 38.72 3.01
1931 1979 6.122964 AGGTTAGTTGGAGGCTCAAATAATC 58.877 40.000 17.69 16.43 38.72 1.75
1932 1980 6.079712 AGGTTAGTTGGAGGCTCAAATAAT 57.920 37.500 17.69 4.65 38.72 1.28
1933 1981 5.514500 AGGTTAGTTGGAGGCTCAAATAA 57.486 39.130 17.69 14.31 35.65 1.40
1934 1982 6.630203 TTAGGTTAGTTGGAGGCTCAAATA 57.370 37.500 17.69 9.40 0.00 1.40
1935 1983 5.514500 TTAGGTTAGTTGGAGGCTCAAAT 57.486 39.130 17.69 10.35 0.00 2.32
1936 1984 4.986054 TTAGGTTAGTTGGAGGCTCAAA 57.014 40.909 17.69 8.86 0.00 2.69
1937 1985 4.349930 AGTTTAGGTTAGTTGGAGGCTCAA 59.650 41.667 17.69 0.76 0.00 3.02
1938 1986 3.908103 AGTTTAGGTTAGTTGGAGGCTCA 59.092 43.478 17.69 0.00 0.00 4.26
1939 1987 4.554960 AGTTTAGGTTAGTTGGAGGCTC 57.445 45.455 5.78 5.78 0.00 4.70
1940 1988 4.081031 GCTAGTTTAGGTTAGTTGGAGGCT 60.081 45.833 0.00 0.00 0.00 4.58
1941 1989 4.190001 GCTAGTTTAGGTTAGTTGGAGGC 58.810 47.826 0.00 0.00 0.00 4.70
1942 1990 4.470304 AGGCTAGTTTAGGTTAGTTGGAGG 59.530 45.833 0.00 0.00 0.00 4.30
1943 1991 5.678955 AGGCTAGTTTAGGTTAGTTGGAG 57.321 43.478 0.00 0.00 0.00 3.86
1944 1992 6.070596 GGTTAGGCTAGTTTAGGTTAGTTGGA 60.071 42.308 0.00 0.00 0.00 3.53
1945 1993 6.111382 GGTTAGGCTAGTTTAGGTTAGTTGG 58.889 44.000 0.00 0.00 0.00 3.77
1946 1994 6.111382 GGGTTAGGCTAGTTTAGGTTAGTTG 58.889 44.000 0.00 0.00 0.00 3.16
1947 1995 5.190528 GGGGTTAGGCTAGTTTAGGTTAGTT 59.809 44.000 0.00 0.00 0.00 2.24
1948 1996 4.718774 GGGGTTAGGCTAGTTTAGGTTAGT 59.281 45.833 0.00 0.00 0.00 2.24
1949 1997 4.718276 TGGGGTTAGGCTAGTTTAGGTTAG 59.282 45.833 0.00 0.00 0.00 2.34
1950 1998 4.697798 TGGGGTTAGGCTAGTTTAGGTTA 58.302 43.478 0.00 0.00 0.00 2.85
1951 1999 3.534192 TGGGGTTAGGCTAGTTTAGGTT 58.466 45.455 0.00 0.00 0.00 3.50
1952 2000 3.210098 TGGGGTTAGGCTAGTTTAGGT 57.790 47.619 0.00 0.00 0.00 3.08
1953 2001 3.714798 TCATGGGGTTAGGCTAGTTTAGG 59.285 47.826 0.00 0.00 0.00 2.69
1954 2002 5.513267 GGATCATGGGGTTAGGCTAGTTTAG 60.513 48.000 0.00 0.00 0.00 1.85
1955 2003 4.349930 GGATCATGGGGTTAGGCTAGTTTA 59.650 45.833 0.00 0.00 0.00 2.01
1956 2004 3.138468 GGATCATGGGGTTAGGCTAGTTT 59.862 47.826 0.00 0.00 0.00 2.66
1957 2005 2.711547 GGATCATGGGGTTAGGCTAGTT 59.288 50.000 0.00 0.00 0.00 2.24
1958 2006 2.339769 GGATCATGGGGTTAGGCTAGT 58.660 52.381 0.00 0.00 0.00 2.57
1959 2007 2.338809 TGGATCATGGGGTTAGGCTAG 58.661 52.381 0.00 0.00 0.00 3.42
1960 2008 2.505672 TGGATCATGGGGTTAGGCTA 57.494 50.000 0.00 0.00 0.00 3.93
1961 2009 1.607225 TTGGATCATGGGGTTAGGCT 58.393 50.000 0.00 0.00 0.00 4.58
1962 2010 2.031870 GTTTGGATCATGGGGTTAGGC 58.968 52.381 0.00 0.00 0.00 3.93
1963 2011 3.290710 CTGTTTGGATCATGGGGTTAGG 58.709 50.000 0.00 0.00 0.00 2.69
1964 2012 3.290710 CCTGTTTGGATCATGGGGTTAG 58.709 50.000 0.00 0.00 38.35 2.34
1965 2013 2.024464 CCCTGTTTGGATCATGGGGTTA 60.024 50.000 0.00 0.00 38.35 2.85
1966 2014 1.273211 CCCTGTTTGGATCATGGGGTT 60.273 52.381 0.00 0.00 38.35 4.11
1967 2015 0.336048 CCCTGTTTGGATCATGGGGT 59.664 55.000 0.00 0.00 38.35 4.95
1968 2016 1.044790 GCCCTGTTTGGATCATGGGG 61.045 60.000 0.00 0.00 38.35 4.96
1969 2017 1.044790 GGCCCTGTTTGGATCATGGG 61.045 60.000 0.00 0.00 38.35 4.00
1970 2018 0.324552 TGGCCCTGTTTGGATCATGG 60.325 55.000 0.00 0.00 38.35 3.66
1971 2019 1.411246 CATGGCCCTGTTTGGATCATG 59.589 52.381 0.00 0.00 38.55 3.07
1972 2020 1.690209 CCATGGCCCTGTTTGGATCAT 60.690 52.381 7.30 0.00 38.35 2.45
1973 2021 0.324552 CCATGGCCCTGTTTGGATCA 60.325 55.000 7.30 0.00 38.35 2.92
1974 2022 1.679559 GCCATGGCCCTGTTTGGATC 61.680 60.000 27.24 0.00 38.35 3.36
1975 2023 1.686800 GCCATGGCCCTGTTTGGAT 60.687 57.895 27.24 0.00 38.35 3.41
1976 2024 2.283821 GCCATGGCCCTGTTTGGA 60.284 61.111 27.24 0.00 38.35 3.53
1977 2025 2.284112 AGCCATGGCCCTGTTTGG 60.284 61.111 33.14 4.55 43.17 3.28
1978 2026 2.975536 CAGCCATGGCCCTGTTTG 59.024 61.111 33.14 19.47 43.17 2.93
1979 2027 2.999063 GCAGCCATGGCCCTGTTT 60.999 61.111 33.14 10.96 43.17 2.83
1993 2041 2.345760 AATCAAGCAAGCCCCGCAG 61.346 57.895 0.00 0.00 0.00 5.18
1994 2042 2.283101 AATCAAGCAAGCCCCGCA 60.283 55.556 0.00 0.00 0.00 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.