>input_sequence_84662
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-------------------------------------------------------------------------------A
TGGCGAAGCCGCTGCTCGTGGGGGCGGACAGGTACAAGCTCGAGAGGCTGAAGCTGATCTGCGAGGAGGAGCTGTGCCGC
CACATGGGCGTCCATTC---GGTGGCCGCCATGCTAGCGCTGGCGGAGCAGCACTGTTGCCGCGTGCTCAAGGAGGCTTG
CACGCGGTTCCTCTCCGAGCCCGGTAATCTGAAAGCAGCCATGGCGACGCGTGACTTCGAGCAGCTGAAGACGGGTTGCC
ACCCTGCTCTCATGGAGCTCGTCATGAAGCAGTATATTGCCGCGACAGAAGCATAG------------------------
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>chr1A_1_TraesCS1A01G072500
AATATCTGACGACTAAAACTTCATGTACTCCTACGTATACTTCTCGGTCATTGCATTGGTCACC----TAAGTCTGTGAT
GCATGCCGAACGCCTGCATCCATCTCT--CCCTGACAAGTTGCTATAACTACTGTACGCGTCGCCTGTGATGCACCCCCA
AACTC--AATCCTTAAACATCACAAGCTTGAGTGTCTATTGATCAATCCACTTTGGCATCGACCATGTCGATGTCG--GC
GCTTATCTCTGCTCTCCGCGGCGCCGGCCGTCAGAAGCTCTCCACCGGCACCATTGTCACCACCACGCAGGTTACCGGCT
CCCACTTGCTCAGAATCGACGGGTGCACACTGAAGACGACGGCCAACGGCACGCTGGTCAAGTCAGGCACCTTCGGCGTC
GGCGGCCACAACTGGCGAATCAAGTGCTACCCGAACGGCAACATGGGTTACGACGGCTGGCTCTCCCTCTATGTCGAGCA
CGCCAGCCATAGCAAGACCGGCGACGCAACGGCTTGTATCTGCATGAGCATACTCGACCACGCCGGGAAGCCATGGCGCA
CCAAAGGTAACATCGCAGCCGAAGCCATGTT--------------------------GGGGCTGGGGAAACTTCGTGGAG
ACCAAAGACCTGGACAAGGAGAAGCAGTTCAAAGA---TGACGGCGTGTCCATCCTATGCGACGTCGACGTCCTCGACGT
GCACACCACCGACTACCGCGCCGGCCTCACATCGACATCCACGGGTACCGTGGTGCCGCCGAGCGAGCTGCACCAGCAGC
TCGCAGATCTCCTGTGGGAGTCCAAGGAGGGGGTGGACGTGGAGATCGAGGTCGGCGGCGAGACCTTCGCGGCGCACAGG
TGGATGCTCGCCGCGCGGTCGCCCACCTTCAAGGCGGAGCTCGCGCTGACCACCGCGACGACGAGGCTACGCGTCGACGG
CATGGATGCTGCAGTCTTCAAGGCCATGCTTCACTTCATATACACGGACGCGCTGACCAAGGAGGTAGAGCTGGCAACGA
TGGCGAAGCCGCTGCTCGTGGGGGCGGACAGGTACAAGCTCGAGAGGCTGAAGCTGATCTGCGAGGAGGAGCTGTGCCGC
CACATGGGCGTCCATTC---GGTGGCCGCCATGCTAGCGCTGGCGGAGCAGCACTGTTGCCGCGTGCTCAAGGAGGCTTG
CACGCGGTTCCTCTCCGAGCCCGGTAATCTGAAAGCAGCCATGGCGACGCGTGACTTCGAGCAGCTGAAGACGGGTTGCC
ACCCTGCTCTCATGGAGCTCGTCATGAAGCAGTATATTGCCGCGACAGAAGCATAGCATAGGGCCCCTGTAGCTCCTTGC
AGGATTAGTGCGTTAACTGGGCTCGTATGAGTTCTCGTCGCTAGCAAGATGCATGATTTCCACTTTTCAAGTTTCAACAG
ACATCCGAGTTCTGAAAAGACTATTATTATGTAGACAAGCTTTAATTCATGAGAGAATTCCTTATTTAACACTAGCTTAA
ACTTTTATTCCCTATTTAACACTGGAAAAATATTTCTTCCCTATCTAACACAGCCTTTAAATTTTGTTCCCAATATAACA
CTTTCATC--CT-TTTTTTATGCGAACAATGTTAAATGACACGTGAAATGACAATTCTACCCTCATACATCTATTCAGTT
CTTTTATTTATTTTGCTGTCCAATTTAAGGGTGAAATCCATGGTTAGTGTAACAGAATGGTGTCATATTCCTGAAGATCA
CACATACGCTAACTCCCTACTGGATGGATTTTTTAAGCTAGCATGCACACAG--CACACGCACGTATAAAACAACATGGG
CCCTGTTTGGATACTCTAACACAGTTAGAGTTAGAGTTATTTTCTAACCCACTCTAACCCAAATAAGCACCTCTCCATCG
GGATAGTTGGGTTAGATAGAACTAACCCACTCTAACCCTCCCTGTTTGGATACTTTTGGATTATTTGAGCCTCCAACTAA
CCTAAACTAGCCTAACCCCATGATCCAAACAGGGCCATGGCTGCGGGGCTTGCTTGATTGACGGCTCGACTAGACGAAAC
ATGCACACGACACACGCGAACAATACGAGGACACGCCGAGTTGATTACAAAAGGACTGTGTCGTGCCTTTGAATTTATTT
TTA-TTT--TTTTGGACCGTGTCGTGCCTTGGGATTTTTAATTGCTAGTATTTCTGATTGGGGTCACGGTTCAGTGTACC
TATATATCAGCTGCCAACACAAGCTTTTTCGATAAAAGGTGCTTTTATTATCTCAAAAAGTAGCATCAAGAAGATACAAC
ACATGTATGCGTACAAGACACGGA
>chr1B_51
--------------------------------------------------TTGCATTGATCACCTAATTAAGTCAGTGAT
GCATGCCGAACTCCTCCATCCATCTATCGCCCGGAAAACTTGCTATAGCTACTCTAGGCATCA-CTGTGATGCACCCT-A
AACAC--AACCCTTAAACATCACAAGCTTGAGTATCGATCGCTCAATCCACTCTGGCATCGACCATGTCGATGTCG--GC
--TTATCTCTGCTCTCCGTGGCGCCGGCCGTCAGCAGCTCTCCACCGGCACCATTGTCGCAACCACGCAGGTTACCGGTT
CCTATTTGCTCAGGATCGACGGGTGCACACTGAAGACGGCCCCCAACGGCACGCTGGTCAAGTCAGGTACCTTCGGCGTC
GGCGGCCACGACTGGCGCATCAAGTGCTACCCGAACGGCGAGAAGGGTTACGACGGCTGGCTCTCCCTCTATCTCGAGCA
CGCCAGCCATAGCAAGACCGGCGACGCAAGGGCTTGTGTCCGCATGAGCATACTGGACCACGCCGGGAAGCCATGGCGCA
CCAAAGGTAATACCGAAGCCAAAGGCGTTAAATATTCGAGCTCGAGCTCAACGTGCCGGGGCTGGGGAAGCTTCATGGAG
ACCAAAGACCTGGACAAGGAGAAGCGGTTCAAGGA---TGACGGCGTGTCCATCCTATGCGACGTCGCCGTCTACGACAC
GCGCGCTGCCAACTACCGCGCCGGGCTCACGC------CCACGGGTACCGTGGTGCCCCCGAGCGAGCTGCACCAGCAGC
TCGCGGTGGTCCTGTGGGAGTCCAAGGAGGGGGTGGACGTGGAGATCGAGGCCGGCGGGGAGACCTTCGCGGCGCACAGG
TGGATGCTCGCCGCCCGGTCGCCCACCTTCAAGGCGGAGCTCGCGCTGACTACCGCAACGAACATGCTACACATCGACGG
CATGGATGCTGCAGTCTTCAAGGCCATGCTTCACTTCATCTACACGGACACGCTGCCGAAGGAGGTAGAGCTGGCGACGA
TGGCGAAGCCGCTGCTCGTGGCGGCGGACAAGTACAAGCTCGAGAGGCTGAAGCTGATCTGCGAGGAGGAGCTGTGCGGG
CACATCGGCGTGCATTCGGTGGTGGCCGCCATGCTGGCGCTGGCGGAACAGAACTGTTGCCGCGTGCTCAAGGAGGCTTG
CACGCAGTTCCTCTCTGAGCCCGGGAATCTGAAAGCAGCCATGGCGACATCTGATTTTGAGCAGCTGAAGACGGGTTGCC
ACCATGCTCTTATGGAGCTCGTCATGAAGCAGTATATTACCGCGACAGAAGCATAGCATAGGGCCCT----GTAGCTTGC
AGGATTAGTGTGTTAACTGGG-----------------------------------------------------------
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>chr1D_65
--------------------------------------------------------------------TAAGTCAGTGAT
GCATGCCGAACGCCTGCAGCCATCCAAACAATG-------TGCTATAACTACTCTACGCATCGCCTGTGATGCACCCT-A
AACTTATAACCCTTAAACATCACAAGCTTGAGTATCGATCGCTCAATCCACTCTGGAATCGACCATGTCAATGTCGGCGC
--TTATCTCTGCTCTCCGCGGCGCCGGCCGTCAGCAGCTCGCCGCCGGCACCACTGTCACCACCACGCAGGTTACCGGTT
CCTACTTGCTCAGGATCGACGGGTGCACACTGAAGACGGCCATCAATGACACGCTGGTCAAGTCAGGTACCTTCGGCGTC
GGCGGCCATGACTGGCGCATCCTGTGCTACCCGAACGGTGCGTGGTTGTACCGCGGCTGGCTCTCCCTCTACCTCGAGCG
CGCCAACCATAGCAAGACCGGCGACGCCATGGCGGATGTCCGCATGAGCATACTCGACCACGACGGCAAGACAAT-----
-------TACAACCAAAAGTGGCGGCCGGAAATTCTCGGGCCCCGATGATAGATGCGGCTGGGACGAA---TTCGTGGAG
ACCGAAGCCCTGGACAAGGAGAAGCGCCTCAAGGATGATGACAACTTGTCCATCCTATGCGACGTCATCGTCTACGACAC
GCGCGCCGCCGACTACCGCGCCGGGCTCACGC------CCACGGGTACCGTGGTGCCTCCGAGCGAGCTGCACCAGCAGC
TCGCGGTGGTCCTGTGGGAGTCCAAGGAGGGGGTGGACGTGGAGATCGAGGTCGGCGGGGAGACCTTCGCGGCGCACAGG
TGGATGCTCGCCGCCCGGTCGCCCGCCTTCAAGGCGGAGCTCGCGCTGACCACAGCAACGAACAGGCTACACATCGACGA
CATGGATGCTGCAGTGTTCAAGGCCATGCTTCTCTTCATCTACACGGACGCGCTGCCCAAGGAGTTGGAGCTGGCAACCA
TGGCGAAGCCGCTGCTCGTGGCGGCGGACAGGTACAAGCTCGAGAGGCTGAAGCTGATCTGCGAGGAGGAGCTGTGCGGG
CACATCGGCGTGCAATC---GGTGGCCGCCATGCTGGCGCTGGCGGAGCAGAATTCTTGCCGCGTGCTCAAGGAGGCTTG
CACGGGGTTCCTCTCCGAGCCCGGTAATCTCAAAGCAGCCATGGCGACCGGTGATTTTGAGCAGCTGAAGACGGGTTGCC
ACCCTGCTCTTATGGAGCTCCTCATGAAGCAGTATATTGCCACGATAGAAGCTTA------GGGCCCTGCAGTAGCCTGC
AGGATTAGTGCGTTAACTGGG-----------------------------------------------------------
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>chr4A_1447
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------------------------------------------------ATGAGAGAATTCTTTATTTAACACTAGCTTAA
ACTTTTATTCCCTATTTAACACTGGAAAAATATTTATTCCCTATCTAACACAGCCTTTAAATTTTGTTCCCAATATAACA
CTTTCATC-T-T-TT-TTTATGCGAACAATGTTAAATGACATGTGAAATGACAATTCTACCCTCATACATCTATTCAGTT
CTTTTATTTATTCTGCTGTCCAATTTAAGGGTGGAATCCATGGTTAGTGTAACAGAATGGTGTCATATTCCTGGAGATCA
CACATATGCTAACTCCCTACTGGATGGATTTTTTAAGCTAGCATGCACACAA--CACACGCACGTATAAAACAACATGCC
C-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------GCGGGGCTTGCTTGATTGACGGCTCGACTAGACGAAAC
ATGCACACGACACACGCGAACAATACGAGGACACACCGAGTTGATTACAAAAGGACTGTGTCGTGCCTTTGGATTTATTT
TTA-TTT--TTTTGGACCGTGTCGTGCCTTGGGATTTTTCATTGCTAGTATTTCTGATTGGGGTCACGGTTCAGTGTACC
TATATATCAGCTGCCAACACAAGCT-------------------------------------------------------
------------------------
>chr4A_1447
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------------------------------------------------ATGAGAGAATTCCTTATTTAACACTAGCTTAA
ACTTTTATTCCCTATTTAACACTGGAAACATATTTCTTCCCTATCTAACACAACCTTTAAATTTTGTTCTCAATATAACA
CTTTCATC-TCT-TTCTTTATGCGAACAATGTTAAATGACACGTGAAATGACAATTCTACCCTCATACATCTATTCAGTT
CTTTTATTTATTCTGCTGTCCTATTTAAGGGTGGAATCCATGGTTAGTGTAACAGAATGGTGTCATATTCCTGGAGATCA
CACATACGCTAACTCCATACCGGATGGATTTCTTAAGCTACCATGCACACAG--CACACGCATGTATAAAACAACATGGC
T-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------GCC-GGCTTGCTTGATTGACGGCTCGACTAGACGAAAC
ATGCACACGACACACGCGAACAAAACGAGGACACGCCGAGTTGATTACAAAAGGACTGTGTCGTTCCTTTGGATTTATTT
TTATTTT--TTTTGGACCGTGTCGTGCCTTGAGATTTTTAATTGCTAGTATTTTTGATTGGTGTCACGGTTCAGTGTACC
TATATATCAGCTGCCAACACAAGCT-------------------------------------------------------
------------------------
>chr1A_1448
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-------------------------------------------------TGAGAGAATTCCTTATTTAACACTAGCTTAA
ACTTTTATTCCTTATTTAATACTGGAAAAATATTTCTTCCCTATTTAACACAGCCTTTAAATTTTGTTCCCAATATAACA
CTTTTATC-TCT-TT-TTTATGCAAACAATGTTAAATGACATGTGAAATGACAATTCTACCCTCATACATCTATTTAGTT
CTTTTATTTATTCTGCTGTCCTATTTAAGGGTGGAATCCATGGTTAGTGTAACAGGATGGTGTCATATTCCTGGAGATCA
CACATACGCTAACTCCCTACTGGATGAATTTCTTAAGCTAGCATGCACATAG--CACACGCATGTATAAAACAACATGAC
C-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------GCC-GGCTTGCTTGATTGACGGCTCGACTAGACGAAAC
ATGCACACGACACACGCGAACAATACGAGGACACGCCGAGTTGATTACAAAAGGACTGTGTCGTGCCTTTGGATTTATTT
TTA-TTT--TTTTGGACCATGTCGTGCCTTGGGATTCTTAATTGCTAGTATTTCTGATTGGGGTCACGGTTCAGTGTACC
TATATATCAGCTGCCAACACAAGCT-------------------------------------------------------
------------------------
>chr5A_1448
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-------------------------------------------------TGAGAGAATTCCTTATTTAACACTAGCTTAA
ACTTTTATTCCCTATTTAACACTAGAAAAATATTTCTTCCCTATCTAACACAACCTTTAAATTTTATTCCCAATATAACA
CTTTCATC-TCT-TT-TTTATGCGAACAATGTTAAATGACACGTGAAATGACAATTCTACCCTCATACATCTATTGAGTT
CTTTTATTTATTCTGCTGTCCTATTTAAGAGTGGAATCCATCGTTAGTGTAACAGAATGGTGTCATATTCGTGGAGATCA
CACATACGCTAACTCCCTACTGGATGGATTTCTTAAGCTAGCATGCACACAG--CACACGCATGTATAAAACAACATGGC
C-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------GCC-GGCTTGCTTGATTGACGGCTCGACTAGACGAAAC
ATGCACACGACACACGCGAACAATACGAGGACACGCCGAGTTGATTACAAAAGGACTGTGTCGTGCCTTTGGATTTATTT
TTA-TTTTTTTTTGGACCGTGTCGTGCCTTGGGATTTTTAATTGCTAGTATTTTTGATTGGGGTCACGGTTCAATGTACC
TATATATCAGCTGCCAACACAAGCT-------------------------------------------------------
------------------------
>chr7B_1449
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--------------------------------------------------GAGAGAATTCCTTATTTAACACTAGCTTAA
ACTTTTATTCCCTATTTAACACTGGAAAAATATTTCTTCCCTATCTAACACAGCCTTTAAATTTTGTTCCCAATATAACA
CTTTCATC-T-TTTT-TTTATGCGAACAATGTTAAATGACACGTGAAATGACAATTCTACCCTCATACATCTATTCAGTT
CTTTTATTTATTCTGCTGTCCAATTTAAGGGTGGAATCCATGGTTAGTGTAACAGAATGGTGTCATATTTCTGAAGATCA
CACATACGCTAACTCCCTACTGGATGGATTTTTTAAGCTAGCATGCACACAG--CACACGCACGTATAAAACAACATGGC
C-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------GTGGGGCTTGCTTGATTGACGGCTCGACTAGACGAAAC
ATGCACACGACACACGCGAACAATACGAGGACACGCCGAGTTGATTACAAAAGGACTGTGTCGTGCCTTTGAATTTATTT
TTA-TTT--TTTTGGACCGTGTCGTGCCTTGGGATTTTTAATTGCTAGTATTTCTGATTGGGGTCACGGTTCAGTGTACC
TATATATCAGCTGCCAACACAAGCTTTTTCGATAAAGGGTGCTTTTATTATCTCAAAAAGTAGCATCAAGAAGATACAAC
ACATGTATGCGTACAAGACATGGA
>chr3A_1449
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--------------------------------------------------GAGAGAATTCCTTATTTAACACTAGCTTAA
ACTTTTATTCCCTATTTAACACTGGAAAAATATTTCTTCCCTATCTAACACAGCCTTTAAATTTTGTTCCCAATATAACA
CTTTCATC-T-T-TT-TTTATGCGAACAATGTTAAATGACACGTGAAATGACAATTCTACCCTCATACATCTATTCAGTT
CCTTTATTTATTCTGCTGTCCAATTTAAGGGTGGAATCCATGGTTAGTGTAACAGAATGGTGTCATATTCCTGGAGATCA
CACATACGCTAACTCCCTACTGGATGGATTTTT-AAGCTAGCATGCACACAG--CACACGCACGTATAAAACAACATGGC
C-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------GCGGGGCTTGCTTGATTGACGGCTTGACTAGACGAAAC
ATGCACACGACACACGCGAACAATACGAGGACACGCTGAGTTGATTACAAAAGGACTGTGTGGTGCCTTTGGATTTATTT
TTA-TTT--TTTTGGACCGTGTCGTGCCTTGGGATTTTTAATTGCTAGTATTTCTGATTGGGGTCACGGTTCAGTGTACC
TATATATCATCTGCCAACACAAGCT-------------------------------------------------------
------------------------
>chr3B_1449
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--------------------------------------------------GAGAGAATTCCTTATTTAACACTAGCTTAA
ACTTTTATTCCCTATTTAACATTGGAAAAATATTTCTTCCCTATCTAACACAGCCTTTAAATTTTGTTCCCAATATAACA
CTTTCATCTT-T-TT-TTTATGCGAACAATGTTAAATGACACGTGAAATGACAATTCTACCCTCATACATCTATTCAGTT
CTTTTATTTATTCTGCTGTCCAATTTAAGGGTGGAATCCATGGTTAGTGTAACAGAATGGTGTCATATTCCTGGAGATCA
CACATACGCTAACTCCCTACTGGATGGATTTTTTAATCTCGCATGCACAGAGCACACACACACGTATAAAACAACATGGC
C-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------GGAGGGCTTGCTTGATTGACGGCTCGACTAGACGAAAC
ATGCACACGACATACGCGAACAATACGAGGACACGCCGAGTTGATTACAAAAGGACTGTGTCGTGCCTTTGGATTTATTT
TTA-TTT--TTTTGAACCGTGTCGTGCCTTGGGATTTTTAATTGCTAGTATTTCTGATTAGGGTCACGAATCAGTGTACC
TATATATCAGCTGCCAACACAAGCT-------------------------------------------------------
------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S---------------S-----
-------------------------S------S--S--S--------------S-----S-----------------SS-
---------S-----------------------S--S--S-S----------S---------------------------
SS--------------------------------S-------------------------------------------S-
--S----------S------------------------S-SS-------------------------S------------
---------S-------S---------------------S-S-S----------------------------S-------
-----------------------------S-------S--S---------------------------------------
----------S-S--S--------S-S--SS--------------------------------------S----------
-------------------------S------S----------------------------------S----SS----SS
--S-S--S----------------S-----SSSSSSSS-------------------S----------------------
----S-SSS-------------------------------------------------S---------------------
--------------S-----------------------------------------S----SS-------S-S-------
---------------------------------------S---------------S------------------------
---------------------S-------------------------------------------------------S-S
-----S-----S-----------------------S---------------S----------------------------
------------------------------------------------SS----S--S----------------------
----------S----------------------------------------------------------S--SSS-----
---------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------
--------------------------------------------------------------------------------
---------------S----------------------------------------------------------------
------------S--------------------S----------------------------------------------
-------------------------------------------------------------------------------S
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------------
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------------------------------------S-------------------------------------------
--------------------S---
>forward_576
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----------------------------------------------------------------------------CGCA
CCAAAGGTAACATCGC----------------------------------------------------------------
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>reverse_1904
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---------------------------------------------------------------TAAGCACCTCTCCATCG
GGA-----------------------------------------------------------------------------
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------------------------
