Multiple sequence alignment - TraesCS1A01G070800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G070800 chr1A 100.000 3056 0 0 1 3056 53508398 53511453 0.000000e+00 5644.0
1 TraesCS1A01G070800 chr1A 82.681 1686 199 51 933 2576 53656993 53658627 0.000000e+00 1410.0
2 TraesCS1A01G070800 chr1A 79.625 1119 195 17 1051 2146 53471791 53472899 0.000000e+00 773.0
3 TraesCS1A01G070800 chr1A 77.294 1308 236 35 1058 2320 53654373 53655664 0.000000e+00 713.0
4 TraesCS1A01G070800 chr1A 90.909 99 9 0 2703 2801 569823522 569823424 1.910000e-27 134.0
5 TraesCS1A01G070800 chr1A 95.745 47 2 0 2997 3043 53658625 53658671 3.270000e-10 76.8
6 TraesCS1A01G070800 chr1D 94.900 1549 55 8 641 2167 54195654 54197200 0.000000e+00 2401.0
7 TraesCS1A01G070800 chr1D 82.303 712 102 14 1385 2078 54018412 54019117 2.030000e-166 595.0
8 TraesCS1A01G070800 chr1D 95.489 266 5 2 382 647 54195372 54195630 4.710000e-113 418.0
9 TraesCS1A01G070800 chr1D 95.238 105 4 1 2526 2629 54197235 54197339 6.780000e-37 165.0
10 TraesCS1A01G070800 chr1B 92.424 1386 73 6 933 2297 90205204 90206578 0.000000e+00 1949.0
11 TraesCS1A01G070800 chr1B 77.355 1051 198 25 1051 2073 89960922 89961960 1.220000e-163 586.0
12 TraesCS1A01G070800 chr1B 90.799 413 23 10 2281 2689 90208959 90209360 3.470000e-149 538.0
13 TraesCS1A01G070800 chr4A 89.899 99 10 0 2703 2801 623828391 623828293 8.890000e-26 128.0
14 TraesCS1A01G070800 chr2A 89.691 97 10 0 2703 2799 240459667 240459571 1.150000e-24 124.0
15 TraesCS1A01G070800 chr5D 87.879 99 12 0 2703 2801 545904670 545904768 1.930000e-22 117.0
16 TraesCS1A01G070800 chr5D 86.667 105 13 1 2699 2802 180472058 180472162 6.920000e-22 115.0
17 TraesCS1A01G070800 chr6A 86.735 98 13 0 2702 2799 488978 488881 3.220000e-20 110.0
18 TraesCS1A01G070800 chr6A 88.679 53 4 2 330 381 144527006 144527057 2.540000e-06 63.9
19 TraesCS1A01G070800 chr3D 86.000 100 14 0 2700 2799 595916495 595916396 1.160000e-19 108.0
20 TraesCS1A01G070800 chr3D 86.885 61 7 1 321 381 592532665 592532724 1.970000e-07 67.6
21 TraesCS1A01G070800 chr7B 84.848 99 15 0 2701 2799 147514751 147514653 1.940000e-17 100.0
22 TraesCS1A01G070800 chr7B 93.750 48 3 0 335 382 642873303 642873350 4.230000e-09 73.1
23 TraesCS1A01G070800 chr2B 84.466 103 13 3 2702 2802 534847536 534847435 6.970000e-17 99.0
24 TraesCS1A01G070800 chr6D 87.838 74 7 2 312 383 43951334 43951407 5.430000e-13 86.1
25 TraesCS1A01G070800 chr3B 91.071 56 4 1 329 383 828344061 828344116 1.180000e-09 75.0
26 TraesCS1A01G070800 chr5A 89.655 58 5 1 325 382 633985873 633985929 4.230000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G070800 chr1A 53508398 53511453 3055 False 5644.000000 5644 100.0000 1 3056 1 chr1A.!!$F2 3055
1 TraesCS1A01G070800 chr1A 53471791 53472899 1108 False 773.000000 773 79.6250 1051 2146 1 chr1A.!!$F1 1095
2 TraesCS1A01G070800 chr1A 53654373 53658671 4298 False 733.266667 1410 85.2400 933 3043 3 chr1A.!!$F3 2110
3 TraesCS1A01G070800 chr1D 54195372 54197339 1967 False 994.666667 2401 95.2090 382 2629 3 chr1D.!!$F2 2247
4 TraesCS1A01G070800 chr1D 54018412 54019117 705 False 595.000000 595 82.3030 1385 2078 1 chr1D.!!$F1 693
5 TraesCS1A01G070800 chr1B 90205204 90209360 4156 False 1243.500000 1949 91.6115 933 2689 2 chr1B.!!$F2 1756
6 TraesCS1A01G070800 chr1B 89960922 89961960 1038 False 586.000000 586 77.3550 1051 2073 1 chr1B.!!$F1 1022

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
37 38 0.180642 CAGGGCATCACAGATCAGCT 59.819 55.0 0.00 0.0 0.00 4.24 F
374 375 0.462047 CCCCCGAATTTCTGGAGACG 60.462 60.0 8.31 0.0 0.00 4.18 F
375 376 0.462047 CCCCGAATTTCTGGAGACGG 60.462 60.0 8.31 0.0 40.03 4.79 F
1656 3361 1.028868 GCGGCATGAAGGAGAAAGCT 61.029 55.0 0.00 0.0 0.00 3.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1014 2703 0.250234 CAAGGTCAGCGGGAAGATCA 59.750 55.0 0.0 0.0 0.00 2.92 R
1858 3564 0.598065 GGGTTGATGAGGTTGCACAC 59.402 55.0 0.0 0.0 0.00 3.82 R
1927 3633 1.772836 AAGCAGGCATCCTTGATTCC 58.227 50.0 0.0 0.0 0.00 3.01 R
2970 7116 0.237498 GTGCTGGTTTTCTACGCACC 59.763 55.0 0.0 0.0 43.68 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.747355 GTGCTTCATGACCCCAATCAG 59.253 52.381 0.00 0.00 30.46 2.90
21 22 1.341285 TGCTTCATGACCCCAATCAGG 60.341 52.381 0.00 0.00 30.46 3.86
31 32 3.888424 CCAATCAGGGCATCACAGA 57.112 52.632 0.00 0.00 0.00 3.41
32 33 2.359981 CCAATCAGGGCATCACAGAT 57.640 50.000 0.00 0.00 0.00 2.90
33 34 2.228059 CCAATCAGGGCATCACAGATC 58.772 52.381 0.00 0.00 0.00 2.75
37 38 0.180642 CAGGGCATCACAGATCAGCT 59.819 55.000 0.00 0.00 0.00 4.24
38 39 0.917533 AGGGCATCACAGATCAGCTT 59.082 50.000 0.00 0.00 0.00 3.74
39 40 2.121948 AGGGCATCACAGATCAGCTTA 58.878 47.619 0.00 0.00 0.00 3.09
41 42 3.137913 AGGGCATCACAGATCAGCTTAAT 59.862 43.478 0.00 0.00 0.00 1.40
42 43 3.887716 GGGCATCACAGATCAGCTTAATT 59.112 43.478 0.00 0.00 0.00 1.40
43 44 4.340381 GGGCATCACAGATCAGCTTAATTT 59.660 41.667 0.00 0.00 0.00 1.82
44 45 5.532406 GGGCATCACAGATCAGCTTAATTTA 59.468 40.000 0.00 0.00 0.00 1.40
46 47 6.293845 GGCATCACAGATCAGCTTAATTTAGG 60.294 42.308 0.00 0.00 0.00 2.69
47 48 6.261826 GCATCACAGATCAGCTTAATTTAGGT 59.738 38.462 0.00 0.00 0.00 3.08
48 49 7.201767 GCATCACAGATCAGCTTAATTTAGGTT 60.202 37.037 0.00 0.00 0.00 3.50
51 52 7.665559 TCACAGATCAGCTTAATTTAGGTTGTT 59.334 33.333 0.00 0.00 0.00 2.83
52 53 8.299570 CACAGATCAGCTTAATTTAGGTTGTTT 58.700 33.333 0.00 0.00 0.00 2.83
53 54 8.860088 ACAGATCAGCTTAATTTAGGTTGTTTT 58.140 29.630 0.00 0.00 0.00 2.43
54 55 9.696917 CAGATCAGCTTAATTTAGGTTGTTTTT 57.303 29.630 0.00 0.00 0.00 1.94
147 148 8.956426 ACATTTTCTTATTTCTTAATCTCGGCA 58.044 29.630 0.00 0.00 0.00 5.69
148 149 9.787532 CATTTTCTTATTTCTTAATCTCGGCAA 57.212 29.630 0.00 0.00 0.00 4.52
150 151 9.620660 TTTTCTTATTTCTTAATCTCGGCAAAC 57.379 29.630 0.00 0.00 0.00 2.93
151 152 7.915293 TCTTATTTCTTAATCTCGGCAAACA 57.085 32.000 0.00 0.00 0.00 2.83
153 154 7.606456 TCTTATTTCTTAATCTCGGCAAACACT 59.394 33.333 0.00 0.00 0.00 3.55
154 155 8.780846 TTATTTCTTAATCTCGGCAAACACTA 57.219 30.769 0.00 0.00 0.00 2.74
155 156 7.865706 ATTTCTTAATCTCGGCAAACACTAT 57.134 32.000 0.00 0.00 0.00 2.12
156 157 8.958119 ATTTCTTAATCTCGGCAAACACTATA 57.042 30.769 0.00 0.00 0.00 1.31
157 158 8.958119 TTTCTTAATCTCGGCAAACACTATAT 57.042 30.769 0.00 0.00 0.00 0.86
160 161 8.201464 TCTTAATCTCGGCAAACACTATATTGA 58.799 33.333 0.00 0.00 0.00 2.57
161 162 8.725405 TTAATCTCGGCAAACACTATATTGAA 57.275 30.769 0.00 0.00 0.00 2.69
163 164 8.902540 AATCTCGGCAAACACTATATTGAATA 57.097 30.769 0.00 0.00 0.00 1.75
164 165 8.902540 ATCTCGGCAAACACTATATTGAATAA 57.097 30.769 0.00 0.00 0.00 1.40
165 166 8.902540 TCTCGGCAAACACTATATTGAATAAT 57.097 30.769 0.00 0.00 0.00 1.28
167 168 9.950680 CTCGGCAAACACTATATTGAATAATTT 57.049 29.630 0.00 0.00 0.00 1.82
240 241 8.853469 AGTACTATATTCACTACTTTTGTCGC 57.147 34.615 0.00 0.00 0.00 5.19
242 243 6.327934 ACTATATTCACTACTTTTGTCGCGT 58.672 36.000 5.77 0.00 0.00 6.01
243 244 6.810182 ACTATATTCACTACTTTTGTCGCGTT 59.190 34.615 5.77 0.00 0.00 4.84
244 245 3.579147 TTCACTACTTTTGTCGCGTTG 57.421 42.857 5.77 0.00 0.00 4.10
246 247 3.386486 TCACTACTTTTGTCGCGTTGAT 58.614 40.909 5.77 0.00 0.00 2.57
247 248 4.548494 TCACTACTTTTGTCGCGTTGATA 58.452 39.130 5.77 0.00 0.00 2.15
248 249 5.165676 TCACTACTTTTGTCGCGTTGATAT 58.834 37.500 5.77 0.00 0.00 1.63
249 250 5.636121 TCACTACTTTTGTCGCGTTGATATT 59.364 36.000 5.77 0.00 0.00 1.28
251 252 6.461698 CACTACTTTTGTCGCGTTGATATTTC 59.538 38.462 5.77 0.00 0.00 2.17
252 253 5.351233 ACTTTTGTCGCGTTGATATTTCA 57.649 34.783 5.77 0.00 0.00 2.69
253 254 5.938322 ACTTTTGTCGCGTTGATATTTCAT 58.062 33.333 5.77 0.00 0.00 2.57
254 255 7.067532 ACTTTTGTCGCGTTGATATTTCATA 57.932 32.000 5.77 0.00 0.00 2.15
256 257 8.822855 ACTTTTGTCGCGTTGATATTTCATATA 58.177 29.630 5.77 0.00 0.00 0.86
257 258 9.811655 CTTTTGTCGCGTTGATATTTCATATAT 57.188 29.630 5.77 0.00 0.00 0.86
261 262 9.592720 TGTCGCGTTGATATTTCATATATTTTG 57.407 29.630 5.77 0.00 0.00 2.44
262 263 8.567221 GTCGCGTTGATATTTCATATATTTTGC 58.433 33.333 5.77 0.00 0.00 3.68
263 264 8.286097 TCGCGTTGATATTTCATATATTTTGCA 58.714 29.630 5.77 0.00 0.00 4.08
264 265 8.357966 CGCGTTGATATTTCATATATTTTGCAC 58.642 33.333 0.00 0.00 0.00 4.57
265 266 9.398170 GCGTTGATATTTCATATATTTTGCACT 57.602 29.630 0.00 0.00 0.00 4.40
275 276 8.797266 TCATATATTTTGCACTACTGTACGAG 57.203 34.615 0.00 0.00 0.00 4.18
276 277 8.626526 TCATATATTTTGCACTACTGTACGAGA 58.373 33.333 0.00 0.00 0.00 4.04
277 278 9.411801 CATATATTTTGCACTACTGTACGAGAT 57.588 33.333 0.00 0.00 0.00 2.75
280 281 6.939551 TTTTGCACTACTGTACGAGATAAC 57.060 37.500 0.00 0.00 0.00 1.89
281 282 5.892160 TTGCACTACTGTACGAGATAACT 57.108 39.130 0.00 0.00 0.00 2.24
282 283 5.481200 TGCACTACTGTACGAGATAACTC 57.519 43.478 0.00 0.00 39.54 3.01
283 284 4.939439 TGCACTACTGTACGAGATAACTCA 59.061 41.667 0.59 0.00 42.72 3.41
284 285 5.589050 TGCACTACTGTACGAGATAACTCAT 59.411 40.000 0.59 0.00 42.72 2.90
285 286 6.764560 TGCACTACTGTACGAGATAACTCATA 59.235 38.462 0.59 0.00 42.72 2.15
286 287 7.444487 TGCACTACTGTACGAGATAACTCATAT 59.556 37.037 0.59 0.00 42.72 1.78
288 289 9.814507 CACTACTGTACGAGATAACTCATATTC 57.185 37.037 0.59 0.00 42.72 1.75
289 290 9.557061 ACTACTGTACGAGATAACTCATATTCA 57.443 33.333 0.59 0.00 42.72 2.57
339 340 7.097623 ACTTTAAAATTTAGGGCCCCATTTT 57.902 32.000 27.72 27.72 34.15 1.82
341 342 8.841757 ACTTTAAAATTTAGGGCCCCATTTTAT 58.158 29.630 28.46 18.84 33.31 1.40
347 348 8.533569 AATTTAGGGCCCCATTTTATATATCG 57.466 34.615 21.43 0.00 0.00 2.92
348 349 3.898482 AGGGCCCCATTTTATATATCGC 58.102 45.455 21.43 0.00 0.00 4.58
349 350 3.268334 AGGGCCCCATTTTATATATCGCA 59.732 43.478 21.43 0.00 0.00 5.10
350 351 3.380320 GGGCCCCATTTTATATATCGCAC 59.620 47.826 12.23 0.00 0.00 5.34
351 352 3.380320 GGCCCCATTTTATATATCGCACC 59.620 47.826 0.00 0.00 0.00 5.01
352 353 3.064820 GCCCCATTTTATATATCGCACCG 59.935 47.826 0.00 0.00 0.00 4.94
353 354 3.625764 CCCCATTTTATATATCGCACCGG 59.374 47.826 0.00 0.00 0.00 5.28
354 355 3.625764 CCCATTTTATATATCGCACCGGG 59.374 47.826 6.32 0.00 0.00 5.73
355 356 3.064820 CCATTTTATATATCGCACCGGGC 59.935 47.826 6.32 5.50 39.90 6.13
356 357 2.389962 TTTATATATCGCACCGGGCC 57.610 50.000 6.32 0.00 40.31 5.80
357 358 0.538118 TTATATATCGCACCGGGCCC 59.462 55.000 13.57 13.57 40.31 5.80
358 359 1.332144 TATATATCGCACCGGGCCCC 61.332 60.000 18.66 0.00 40.31 5.80
369 370 2.442087 GGGCCCCCGAATTTCTGG 60.442 66.667 12.23 0.11 0.00 3.86
370 371 2.680965 GGCCCCCGAATTTCTGGA 59.319 61.111 8.31 0.00 0.00 3.86
371 372 1.453928 GGCCCCCGAATTTCTGGAG 60.454 63.158 8.31 0.00 0.00 3.86
373 374 0.748367 GCCCCCGAATTTCTGGAGAC 60.748 60.000 8.31 0.00 0.00 3.36
374 375 0.462047 CCCCCGAATTTCTGGAGACG 60.462 60.000 8.31 0.00 0.00 4.18
375 376 0.462047 CCCCGAATTTCTGGAGACGG 60.462 60.000 8.31 0.00 40.03 4.79
376 377 1.090052 CCCGAATTTCTGGAGACGGC 61.090 60.000 0.79 0.00 39.19 5.68
378 379 1.090052 CGAATTTCTGGAGACGGCCC 61.090 60.000 0.00 0.00 36.33 5.80
518 519 8.002459 TCCCCTGTTCTTCTTAGTACAAATTTT 58.998 33.333 0.00 0.00 32.24 1.82
822 853 6.619329 AGATAGCTATCCCAATCTTCCTTC 57.381 41.667 26.65 1.89 33.17 3.46
864 895 9.438228 TGACATGTTATCTGTTCGGTTTAAATA 57.562 29.630 0.00 0.00 0.00 1.40
1014 2703 3.393089 ACAAGAATGTCAGAGCTTCGT 57.607 42.857 0.00 0.00 33.41 3.85
1087 2776 4.098044 TCAAGGTAGACGGCTATTCAAGAG 59.902 45.833 0.00 0.00 0.00 2.85
1209 2904 4.776349 TCACACATTATGAAGCCGGTTAT 58.224 39.130 1.90 0.00 0.00 1.89
1330 3031 2.025887 AGAAGCAAGACCAATCCCGAAT 60.026 45.455 0.00 0.00 0.00 3.34
1355 3056 5.356470 GCATCTTCTCTAGCAAAGGTTCATT 59.644 40.000 4.67 0.00 0.00 2.57
1366 3067 4.631131 CAAAGGTTCATTCAAGGGTTTCC 58.369 43.478 0.00 0.00 0.00 3.13
1478 3179 6.289064 AGAATATCCACAAAGGTAATCGGTC 58.711 40.000 0.00 0.00 39.02 4.79
1480 3181 3.328382 TCCACAAAGGTAATCGGTCTG 57.672 47.619 0.00 0.00 39.02 3.51
1486 3187 1.568504 AGGTAATCGGTCTGGCTTGA 58.431 50.000 0.00 0.00 0.00 3.02
1506 3207 3.822735 TGATTCCTCCAAGAAACTTGCAG 59.177 43.478 6.04 1.26 0.00 4.41
1656 3361 1.028868 GCGGCATGAAGGAGAAAGCT 61.029 55.000 0.00 0.00 0.00 3.74
1701 3406 3.692101 ACATGGAAAGTGACGTGTTCAAA 59.308 39.130 0.00 0.00 35.39 2.69
1858 3564 1.617850 AGCTGATATGCGAAGAGAGGG 59.382 52.381 0.00 0.00 38.13 4.30
1927 3633 2.749044 AGCAGCACGGCTTCCATG 60.749 61.111 0.00 0.00 42.71 3.66
2045 3767 2.515757 GCTGCTAGCTTCCTGCCC 60.516 66.667 17.23 0.00 44.23 5.36
2099 3821 8.437360 TCATGACAATTTAGTATTGTGGCTAG 57.563 34.615 7.78 0.00 41.76 3.42
2305 6425 8.990163 TTTCTTTATGGTTTGTAAGGACTTCT 57.010 30.769 0.00 0.00 0.00 2.85
2314 6434 7.497909 TGGTTTGTAAGGACTTCTAAGTTTCTG 59.502 37.037 0.00 0.00 39.88 3.02
2334 6471 4.053295 CTGCAGTTTCTGTTTTTCCCATG 58.947 43.478 5.25 0.00 33.43 3.66
2335 6472 2.802247 GCAGTTTCTGTTTTTCCCATGC 59.198 45.455 0.00 0.00 33.43 4.06
2336 6473 3.740764 GCAGTTTCTGTTTTTCCCATGCA 60.741 43.478 0.00 0.00 33.43 3.96
2337 6474 4.634199 CAGTTTCTGTTTTTCCCATGCAT 58.366 39.130 0.00 0.00 0.00 3.96
2338 6475 4.449743 CAGTTTCTGTTTTTCCCATGCATG 59.550 41.667 20.19 20.19 0.00 4.06
2359 6496 3.260380 TGGTTAATGTGGAATTGGCAAGG 59.740 43.478 5.96 0.00 0.00 3.61
2392 6529 6.969828 AGACTGAAATTTTCATCGTCTACC 57.030 37.500 22.65 6.23 40.96 3.18
2393 6530 6.702329 AGACTGAAATTTTCATCGTCTACCT 58.298 36.000 22.65 8.00 40.96 3.08
2395 6532 7.118390 AGACTGAAATTTTCATCGTCTACCTTG 59.882 37.037 22.65 8.04 40.96 3.61
2396 6533 5.938322 TGAAATTTTCATCGTCTACCTTGC 58.062 37.500 7.74 0.00 34.08 4.01
2397 6534 5.705441 TGAAATTTTCATCGTCTACCTTGCT 59.295 36.000 7.74 0.00 34.08 3.91
2398 6535 6.206634 TGAAATTTTCATCGTCTACCTTGCTT 59.793 34.615 7.74 0.00 34.08 3.91
2399 6536 7.389330 TGAAATTTTCATCGTCTACCTTGCTTA 59.611 33.333 7.74 0.00 34.08 3.09
2403 6540 7.766219 TTTCATCGTCTACCTTGCTTATAAC 57.234 36.000 0.00 0.00 0.00 1.89
2511 6656 0.984230 TCAATCCCGAGGCTTCAGTT 59.016 50.000 0.00 0.00 0.00 3.16
2568 6714 4.159135 CACCTGCAGCCTGAATTTCTATTT 59.841 41.667 8.66 0.00 0.00 1.40
2595 6741 0.975544 CACTCGTCGCTGACTTTACG 59.024 55.000 7.03 0.00 36.71 3.18
2652 6798 3.686241 GCATGCAAGAGTCACAACAGATA 59.314 43.478 14.21 0.00 0.00 1.98
2657 6803 4.515191 GCAAGAGTCACAACAGATAAACCA 59.485 41.667 0.00 0.00 0.00 3.67
2660 6806 7.624344 GCAAGAGTCACAACAGATAAACCATAC 60.624 40.741 0.00 0.00 0.00 2.39
2678 6824 5.118990 CCATACCTGATCTCATGTTCGTTT 58.881 41.667 0.00 0.00 0.00 3.60
2681 6827 3.189287 ACCTGATCTCATGTTCGTTTTGC 59.811 43.478 0.00 0.00 0.00 3.68
2682 6828 3.410850 CTGATCTCATGTTCGTTTTGCG 58.589 45.455 0.00 0.00 43.01 4.85
2689 6835 0.248296 TGTTCGTTTTGCGTTCTGCC 60.248 50.000 0.00 0.00 45.60 4.85
2690 6836 0.248296 GTTCGTTTTGCGTTCTGCCA 60.248 50.000 0.00 0.00 45.60 4.92
2691 6837 0.665835 TTCGTTTTGCGTTCTGCCAT 59.334 45.000 0.00 0.00 45.60 4.40
2692 6838 0.665835 TCGTTTTGCGTTCTGCCATT 59.334 45.000 0.00 0.00 45.60 3.16
2693 6839 1.052287 CGTTTTGCGTTCTGCCATTC 58.948 50.000 0.00 0.00 45.60 2.67
2694 6840 1.418373 GTTTTGCGTTCTGCCATTCC 58.582 50.000 0.00 0.00 45.60 3.01
2695 6841 1.000274 GTTTTGCGTTCTGCCATTCCT 60.000 47.619 0.00 0.00 45.60 3.36
2696 6842 0.597568 TTTGCGTTCTGCCATTCCTG 59.402 50.000 0.00 0.00 45.60 3.86
2697 6843 1.865788 TTGCGTTCTGCCATTCCTGC 61.866 55.000 0.00 0.00 45.60 4.85
2698 6844 2.042831 GCGTTCTGCCATTCCTGCT 61.043 57.895 0.00 0.00 37.76 4.24
2699 6845 0.744414 GCGTTCTGCCATTCCTGCTA 60.744 55.000 0.00 0.00 37.76 3.49
2700 6846 1.959042 CGTTCTGCCATTCCTGCTAT 58.041 50.000 0.00 0.00 0.00 2.97
2701 6847 2.806745 GCGTTCTGCCATTCCTGCTATA 60.807 50.000 0.00 0.00 37.76 1.31
2702 6848 3.668447 CGTTCTGCCATTCCTGCTATAT 58.332 45.455 0.00 0.00 0.00 0.86
2703 6849 4.820897 CGTTCTGCCATTCCTGCTATATA 58.179 43.478 0.00 0.00 0.00 0.86
2704 6850 4.627467 CGTTCTGCCATTCCTGCTATATAC 59.373 45.833 0.00 0.00 0.00 1.47
2705 6851 5.567623 CGTTCTGCCATTCCTGCTATATACT 60.568 44.000 0.00 0.00 0.00 2.12
2706 6852 5.667539 TCTGCCATTCCTGCTATATACTC 57.332 43.478 0.00 0.00 0.00 2.59
2707 6853 4.467795 TCTGCCATTCCTGCTATATACTCC 59.532 45.833 0.00 0.00 0.00 3.85
2708 6854 3.519510 TGCCATTCCTGCTATATACTCCC 59.480 47.826 0.00 0.00 0.00 4.30
2709 6855 3.777522 GCCATTCCTGCTATATACTCCCT 59.222 47.826 0.00 0.00 0.00 4.20
2710 6856 4.226168 GCCATTCCTGCTATATACTCCCTT 59.774 45.833 0.00 0.00 0.00 3.95
2711 6857 5.627968 GCCATTCCTGCTATATACTCCCTTC 60.628 48.000 0.00 0.00 0.00 3.46
2712 6858 5.394663 CCATTCCTGCTATATACTCCCTTCG 60.395 48.000 0.00 0.00 0.00 3.79
2713 6859 4.383931 TCCTGCTATATACTCCCTTCGT 57.616 45.455 0.00 0.00 0.00 3.85
2714 6860 4.333690 TCCTGCTATATACTCCCTTCGTC 58.666 47.826 0.00 0.00 0.00 4.20
2715 6861 3.444388 CCTGCTATATACTCCCTTCGTCC 59.556 52.174 0.00 0.00 0.00 4.79
2716 6862 3.428532 TGCTATATACTCCCTTCGTCCC 58.571 50.000 0.00 0.00 0.00 4.46
2717 6863 3.181426 TGCTATATACTCCCTTCGTCCCA 60.181 47.826 0.00 0.00 0.00 4.37
2718 6864 3.830755 GCTATATACTCCCTTCGTCCCAA 59.169 47.826 0.00 0.00 0.00 4.12
2719 6865 4.282703 GCTATATACTCCCTTCGTCCCAAA 59.717 45.833 0.00 0.00 0.00 3.28
2720 6866 5.221581 GCTATATACTCCCTTCGTCCCAAAA 60.222 44.000 0.00 0.00 0.00 2.44
2721 6867 5.906772 ATATACTCCCTTCGTCCCAAAAT 57.093 39.130 0.00 0.00 0.00 1.82
2722 6868 7.310237 GCTATATACTCCCTTCGTCCCAAAATA 60.310 40.741 0.00 0.00 0.00 1.40
2723 6869 5.703730 ATACTCCCTTCGTCCCAAAATAA 57.296 39.130 0.00 0.00 0.00 1.40
2724 6870 4.376225 ACTCCCTTCGTCCCAAAATAAA 57.624 40.909 0.00 0.00 0.00 1.40
2725 6871 4.930696 ACTCCCTTCGTCCCAAAATAAAT 58.069 39.130 0.00 0.00 0.00 1.40
2726 6872 6.069705 ACTCCCTTCGTCCCAAAATAAATA 57.930 37.500 0.00 0.00 0.00 1.40
2727 6873 6.486941 ACTCCCTTCGTCCCAAAATAAATAA 58.513 36.000 0.00 0.00 0.00 1.40
2728 6874 6.376299 ACTCCCTTCGTCCCAAAATAAATAAC 59.624 38.462 0.00 0.00 0.00 1.89
2729 6875 6.486941 TCCCTTCGTCCCAAAATAAATAACT 58.513 36.000 0.00 0.00 0.00 2.24
2730 6876 6.600427 TCCCTTCGTCCCAAAATAAATAACTC 59.400 38.462 0.00 0.00 0.00 3.01
2731 6877 6.376018 CCCTTCGTCCCAAAATAAATAACTCA 59.624 38.462 0.00 0.00 0.00 3.41
2732 6878 7.094118 CCCTTCGTCCCAAAATAAATAACTCAA 60.094 37.037 0.00 0.00 0.00 3.02
2733 6879 7.968405 CCTTCGTCCCAAAATAAATAACTCAAG 59.032 37.037 0.00 0.00 0.00 3.02
2734 6880 7.989416 TCGTCCCAAAATAAATAACTCAAGT 57.011 32.000 0.00 0.00 0.00 3.16
2735 6881 8.398878 TCGTCCCAAAATAAATAACTCAAGTT 57.601 30.769 0.46 0.46 41.73 2.66
2736 6882 8.852135 TCGTCCCAAAATAAATAACTCAAGTTT 58.148 29.630 0.00 0.00 39.31 2.66
2793 6939 9.846248 CTTGAGTCACTTATTTTAAAATGGAGG 57.154 33.333 21.19 7.34 0.00 4.30
2794 6940 8.348285 TGAGTCACTTATTTTAAAATGGAGGG 57.652 34.615 21.19 18.44 0.00 4.30
2795 6941 8.167392 TGAGTCACTTATTTTAAAATGGAGGGA 58.833 33.333 21.19 20.03 0.00 4.20
2796 6942 8.581253 AGTCACTTATTTTAAAATGGAGGGAG 57.419 34.615 21.70 14.35 30.87 4.30
2797 6943 8.170730 AGTCACTTATTTTAAAATGGAGGGAGT 58.829 33.333 21.70 21.51 30.87 3.85
2798 6944 9.457436 GTCACTTATTTTAAAATGGAGGGAGTA 57.543 33.333 21.70 7.35 30.87 2.59
2809 6955 7.411486 AAATGGAGGGAGTATATCACTATCG 57.589 40.000 0.00 0.00 43.76 2.92
2810 6956 4.856509 TGGAGGGAGTATATCACTATCGG 58.143 47.826 0.00 0.00 43.76 4.18
2811 6957 4.538891 TGGAGGGAGTATATCACTATCGGA 59.461 45.833 0.00 0.00 43.76 4.55
2812 6958 5.014860 TGGAGGGAGTATATCACTATCGGAA 59.985 44.000 0.00 0.00 43.76 4.30
2813 6959 6.130569 GGAGGGAGTATATCACTATCGGAAT 58.869 44.000 0.00 0.00 43.76 3.01
2814 6960 6.608002 GGAGGGAGTATATCACTATCGGAATT 59.392 42.308 0.00 0.00 43.76 2.17
2815 6961 7.778853 GGAGGGAGTATATCACTATCGGAATTA 59.221 40.741 0.00 0.00 43.76 1.40
2816 6962 9.186837 GAGGGAGTATATCACTATCGGAATTAA 57.813 37.037 0.00 0.00 43.76 1.40
2817 6963 9.543231 AGGGAGTATATCACTATCGGAATTAAA 57.457 33.333 0.00 0.00 41.08 1.52
2827 6973 8.286800 TCACTATCGGAATTAAAAATTATGCCG 58.713 33.333 0.00 0.00 43.11 5.69
2830 6976 5.503498 TCGGAATTAAAAATTATGCCGACG 58.497 37.500 4.22 0.00 44.94 5.12
2831 6977 4.673311 CGGAATTAAAAATTATGCCGACGG 59.327 41.667 10.29 10.29 44.25 4.79
2832 6978 8.850026 TCGGAATTAAAAATTATGCCGACGGC 62.850 42.308 31.85 31.85 44.94 5.68
2880 7026 4.195308 GCATACGGCCGTCTTCAA 57.805 55.556 38.01 18.62 36.11 2.69
2881 7027 1.713830 GCATACGGCCGTCTTCAAC 59.286 57.895 38.01 15.79 36.11 3.18
2892 7038 2.359598 CGTCTTCAACGTTTTTGTCGG 58.640 47.619 0.00 0.00 46.42 4.79
2893 7039 2.106418 GTCTTCAACGTTTTTGTCGGC 58.894 47.619 0.00 0.00 0.00 5.54
2894 7040 1.738350 TCTTCAACGTTTTTGTCGGCA 59.262 42.857 0.00 0.00 0.00 5.69
2895 7041 2.356382 TCTTCAACGTTTTTGTCGGCAT 59.644 40.909 0.00 0.00 0.00 4.40
2896 7042 3.560481 TCTTCAACGTTTTTGTCGGCATA 59.440 39.130 0.00 0.00 0.00 3.14
2897 7043 3.529634 TCAACGTTTTTGTCGGCATAG 57.470 42.857 0.00 0.00 0.00 2.23
2898 7044 3.132160 TCAACGTTTTTGTCGGCATAGA 58.868 40.909 0.00 0.00 0.00 1.98
2899 7045 3.749088 TCAACGTTTTTGTCGGCATAGAT 59.251 39.130 0.00 0.00 0.00 1.98
2900 7046 4.088648 CAACGTTTTTGTCGGCATAGATC 58.911 43.478 0.00 0.00 0.00 2.75
2901 7047 3.596214 ACGTTTTTGTCGGCATAGATCT 58.404 40.909 0.00 0.00 0.00 2.75
2902 7048 3.370978 ACGTTTTTGTCGGCATAGATCTG 59.629 43.478 5.18 0.00 0.00 2.90
2903 7049 3.370978 CGTTTTTGTCGGCATAGATCTGT 59.629 43.478 5.18 0.00 0.00 3.41
2904 7050 4.492570 CGTTTTTGTCGGCATAGATCTGTC 60.493 45.833 5.18 0.00 0.00 3.51
2905 7051 3.885724 TTTGTCGGCATAGATCTGTCA 57.114 42.857 5.18 0.00 0.00 3.58
2906 7052 3.443099 TTGTCGGCATAGATCTGTCAG 57.557 47.619 5.18 0.00 0.00 3.51
2907 7053 2.379005 TGTCGGCATAGATCTGTCAGT 58.621 47.619 5.18 0.00 0.00 3.41
2908 7054 2.359214 TGTCGGCATAGATCTGTCAGTC 59.641 50.000 5.18 0.00 0.00 3.51
2909 7055 2.621055 GTCGGCATAGATCTGTCAGTCT 59.379 50.000 5.18 5.15 0.00 3.24
2910 7056 2.620585 TCGGCATAGATCTGTCAGTCTG 59.379 50.000 5.18 0.00 0.00 3.51
2911 7057 2.360483 CGGCATAGATCTGTCAGTCTGT 59.640 50.000 5.18 5.85 0.00 3.41
2912 7058 3.549827 CGGCATAGATCTGTCAGTCTGTC 60.550 52.174 5.18 0.00 0.00 3.51
2913 7059 3.549827 GGCATAGATCTGTCAGTCTGTCG 60.550 52.174 5.18 5.09 0.00 4.35
2914 7060 3.549827 GCATAGATCTGTCAGTCTGTCGG 60.550 52.174 5.18 0.00 0.00 4.79
2915 7061 2.208132 AGATCTGTCAGTCTGTCGGT 57.792 50.000 0.00 0.00 0.00 4.69
2916 7062 3.351794 AGATCTGTCAGTCTGTCGGTA 57.648 47.619 0.00 0.00 0.00 4.02
2917 7063 3.892284 AGATCTGTCAGTCTGTCGGTAT 58.108 45.455 0.00 0.00 0.00 2.73
2918 7064 5.037383 AGATCTGTCAGTCTGTCGGTATA 57.963 43.478 0.00 0.00 0.00 1.47
2919 7065 5.626142 AGATCTGTCAGTCTGTCGGTATAT 58.374 41.667 0.00 0.00 0.00 0.86
2920 7066 6.770542 AGATCTGTCAGTCTGTCGGTATATA 58.229 40.000 0.00 0.00 0.00 0.86
2921 7067 7.225011 AGATCTGTCAGTCTGTCGGTATATAA 58.775 38.462 0.00 0.00 0.00 0.98
2922 7068 7.720074 AGATCTGTCAGTCTGTCGGTATATAAA 59.280 37.037 0.00 0.00 0.00 1.40
2923 7069 7.634671 TCTGTCAGTCTGTCGGTATATAAAA 57.365 36.000 0.00 0.00 0.00 1.52
2924 7070 7.704271 TCTGTCAGTCTGTCGGTATATAAAAG 58.296 38.462 0.00 0.00 0.00 2.27
2925 7071 7.338703 TCTGTCAGTCTGTCGGTATATAAAAGT 59.661 37.037 0.00 0.00 0.00 2.66
2926 7072 7.255569 TGTCAGTCTGTCGGTATATAAAAGTG 58.744 38.462 0.00 0.00 0.00 3.16
2927 7073 7.121611 TGTCAGTCTGTCGGTATATAAAAGTGA 59.878 37.037 0.00 0.00 0.00 3.41
2928 7074 8.136165 GTCAGTCTGTCGGTATATAAAAGTGAT 58.864 37.037 0.00 0.00 0.00 3.06
2929 7075 8.692710 TCAGTCTGTCGGTATATAAAAGTGATT 58.307 33.333 0.00 0.00 0.00 2.57
2930 7076 9.314321 CAGTCTGTCGGTATATAAAAGTGATTT 57.686 33.333 0.00 0.00 34.92 2.17
2935 7081 9.454585 TGTCGGTATATAAAAGTGATTTAGACG 57.545 33.333 0.00 0.00 36.94 4.18
2936 7082 9.455847 GTCGGTATATAAAAGTGATTTAGACGT 57.544 33.333 0.00 0.00 36.94 4.34
2971 7117 8.581253 AAAGTGATTTAGACCAAAAGATAGGG 57.419 34.615 0.00 0.00 0.00 3.53
2972 7118 7.272144 AGTGATTTAGACCAAAAGATAGGGT 57.728 36.000 0.00 0.00 37.70 4.34
2973 7119 7.112779 AGTGATTTAGACCAAAAGATAGGGTG 58.887 38.462 0.00 0.00 34.39 4.61
2974 7120 5.885912 TGATTTAGACCAAAAGATAGGGTGC 59.114 40.000 0.00 0.00 34.39 5.01
2975 7121 2.403252 AGACCAAAAGATAGGGTGCG 57.597 50.000 0.00 0.00 34.39 5.34
2976 7122 1.628846 AGACCAAAAGATAGGGTGCGT 59.371 47.619 0.00 0.00 34.39 5.24
2977 7123 2.835764 AGACCAAAAGATAGGGTGCGTA 59.164 45.455 0.00 0.00 34.39 4.42
2978 7124 3.118738 AGACCAAAAGATAGGGTGCGTAG 60.119 47.826 0.00 0.00 34.39 3.51
2979 7125 2.835764 ACCAAAAGATAGGGTGCGTAGA 59.164 45.455 0.00 0.00 32.60 2.59
2980 7126 3.262405 ACCAAAAGATAGGGTGCGTAGAA 59.738 43.478 0.00 0.00 32.60 2.10
2981 7127 4.258543 CCAAAAGATAGGGTGCGTAGAAA 58.741 43.478 0.00 0.00 0.00 2.52
2982 7128 4.698304 CCAAAAGATAGGGTGCGTAGAAAA 59.302 41.667 0.00 0.00 0.00 2.29
2983 7129 5.391629 CCAAAAGATAGGGTGCGTAGAAAAC 60.392 44.000 0.00 0.00 0.00 2.43
2984 7130 3.538634 AGATAGGGTGCGTAGAAAACC 57.461 47.619 0.00 0.00 0.00 3.27
2985 7131 2.835764 AGATAGGGTGCGTAGAAAACCA 59.164 45.455 0.00 0.00 35.56 3.67
2986 7132 2.754946 TAGGGTGCGTAGAAAACCAG 57.245 50.000 0.00 0.00 35.56 4.00
2987 7133 0.605589 AGGGTGCGTAGAAAACCAGC 60.606 55.000 0.00 0.00 35.56 4.85
2988 7134 0.887387 GGGTGCGTAGAAAACCAGCA 60.887 55.000 0.00 0.00 35.56 4.41
2990 7136 2.624169 TGCGTAGAAAACCAGCACC 58.376 52.632 0.00 0.00 32.43 5.01
2991 7137 0.887387 TGCGTAGAAAACCAGCACCC 60.887 55.000 0.00 0.00 32.43 4.61
2992 7138 1.908066 GCGTAGAAAACCAGCACCCG 61.908 60.000 0.00 0.00 0.00 5.28
2993 7139 1.873863 GTAGAAAACCAGCACCCGC 59.126 57.895 0.00 0.00 38.99 6.13
2994 7140 1.302993 TAGAAAACCAGCACCCGCC 60.303 57.895 0.00 0.00 39.83 6.13
2995 7141 2.058125 TAGAAAACCAGCACCCGCCA 62.058 55.000 0.00 0.00 39.83 5.69
2996 7142 2.912025 AAAACCAGCACCCGCCAG 60.912 61.111 0.00 0.00 39.83 4.85
2997 7143 3.429372 AAAACCAGCACCCGCCAGA 62.429 57.895 0.00 0.00 39.83 3.86
2998 7144 2.713531 AAAACCAGCACCCGCCAGAT 62.714 55.000 0.00 0.00 39.83 2.90
2999 7145 1.847798 AAACCAGCACCCGCCAGATA 61.848 55.000 0.00 0.00 39.83 1.98
3000 7146 2.109799 CCAGCACCCGCCAGATAG 59.890 66.667 0.00 0.00 39.83 2.08
3001 7147 2.735772 CCAGCACCCGCCAGATAGT 61.736 63.158 0.00 0.00 39.83 2.12
3002 7148 1.399744 CCAGCACCCGCCAGATAGTA 61.400 60.000 0.00 0.00 39.83 1.82
3003 7149 0.681733 CAGCACCCGCCAGATAGTAT 59.318 55.000 0.00 0.00 39.83 2.12
3004 7150 1.070758 CAGCACCCGCCAGATAGTATT 59.929 52.381 0.00 0.00 39.83 1.89
3005 7151 1.344763 AGCACCCGCCAGATAGTATTC 59.655 52.381 0.00 0.00 39.83 1.75
3043 7189 1.939974 TTGTCACACAGCTCAGACAC 58.060 50.000 6.57 0.00 40.37 3.67
3044 7190 0.823460 TGTCACACAGCTCAGACACA 59.177 50.000 3.67 0.00 36.20 3.72
3045 7191 1.206849 TGTCACACAGCTCAGACACAA 59.793 47.619 3.67 0.00 36.20 3.33
3046 7192 2.279741 GTCACACAGCTCAGACACAAA 58.720 47.619 0.00 0.00 0.00 2.83
3047 7193 2.286294 GTCACACAGCTCAGACACAAAG 59.714 50.000 0.00 0.00 0.00 2.77
3048 7194 1.003116 CACACAGCTCAGACACAAAGC 60.003 52.381 0.00 0.00 36.27 3.51
3049 7195 1.134280 ACACAGCTCAGACACAAAGCT 60.134 47.619 0.00 0.00 46.98 3.74
3050 7196 2.103094 ACACAGCTCAGACACAAAGCTA 59.897 45.455 0.00 0.00 44.30 3.32
3051 7197 3.244353 ACACAGCTCAGACACAAAGCTAT 60.244 43.478 0.00 0.00 44.30 2.97
3052 7198 3.124806 CACAGCTCAGACACAAAGCTATG 59.875 47.826 0.00 0.00 44.30 2.23
3053 7199 2.095532 CAGCTCAGACACAAAGCTATGC 59.904 50.000 0.00 0.00 44.30 3.14
3054 7200 2.079158 GCTCAGACACAAAGCTATGCA 58.921 47.619 0.00 0.00 33.23 3.96
3055 7201 2.681848 GCTCAGACACAAAGCTATGCAT 59.318 45.455 3.79 3.79 33.23 3.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.747355 CTGATTGGGGTCATGAAGCAC 59.253 52.381 0.00 0.00 0.00 4.40
1 2 1.341285 CCTGATTGGGGTCATGAAGCA 60.341 52.381 0.00 0.00 0.00 3.91
2 3 1.396653 CCTGATTGGGGTCATGAAGC 58.603 55.000 0.00 0.00 0.00 3.86
13 14 2.228059 GATCTGTGATGCCCTGATTGG 58.772 52.381 0.00 0.00 0.00 3.16
14 15 2.879026 CTGATCTGTGATGCCCTGATTG 59.121 50.000 0.00 0.00 0.00 2.67
15 16 2.748798 GCTGATCTGTGATGCCCTGATT 60.749 50.000 1.27 0.00 0.00 2.57
17 18 0.179702 GCTGATCTGTGATGCCCTGA 59.820 55.000 1.27 0.00 0.00 3.86
18 19 0.180642 AGCTGATCTGTGATGCCCTG 59.819 55.000 1.27 0.00 0.00 4.45
20 21 2.627515 TAAGCTGATCTGTGATGCCC 57.372 50.000 1.27 0.00 0.00 5.36
21 22 5.511234 AAATTAAGCTGATCTGTGATGCC 57.489 39.130 1.27 0.00 0.00 4.40
22 23 6.261826 ACCTAAATTAAGCTGATCTGTGATGC 59.738 38.462 1.27 0.00 0.00 3.91
24 25 7.831193 ACAACCTAAATTAAGCTGATCTGTGAT 59.169 33.333 1.27 0.00 0.00 3.06
25 26 7.168219 ACAACCTAAATTAAGCTGATCTGTGA 58.832 34.615 1.27 0.00 0.00 3.58
28 29 9.696917 AAAAACAACCTAAATTAAGCTGATCTG 57.303 29.630 0.00 0.00 0.00 2.90
121 122 8.956426 TGCCGAGATTAAGAAATAAGAAAATGT 58.044 29.630 0.00 0.00 0.00 2.71
122 123 9.787532 TTGCCGAGATTAAGAAATAAGAAAATG 57.212 29.630 0.00 0.00 0.00 2.32
124 125 9.620660 GTTTGCCGAGATTAAGAAATAAGAAAA 57.379 29.630 0.00 0.00 0.00 2.29
125 126 8.788806 TGTTTGCCGAGATTAAGAAATAAGAAA 58.211 29.630 0.00 0.00 0.00 2.52
126 127 8.234546 GTGTTTGCCGAGATTAAGAAATAAGAA 58.765 33.333 0.00 0.00 0.00 2.52
127 128 7.606456 AGTGTTTGCCGAGATTAAGAAATAAGA 59.394 33.333 0.00 0.00 0.00 2.10
129 130 7.681939 AGTGTTTGCCGAGATTAAGAAATAA 57.318 32.000 0.00 0.00 0.00 1.40
130 131 8.958119 ATAGTGTTTGCCGAGATTAAGAAATA 57.042 30.769 0.00 0.00 0.00 1.40
131 132 7.865706 ATAGTGTTTGCCGAGATTAAGAAAT 57.134 32.000 0.00 0.00 0.00 2.17
132 133 8.958119 ATATAGTGTTTGCCGAGATTAAGAAA 57.042 30.769 0.00 0.00 0.00 2.52
133 134 8.826710 CAATATAGTGTTTGCCGAGATTAAGAA 58.173 33.333 0.00 0.00 0.00 2.52
134 135 8.201464 TCAATATAGTGTTTGCCGAGATTAAGA 58.799 33.333 0.00 0.00 0.00 2.10
135 136 8.365399 TCAATATAGTGTTTGCCGAGATTAAG 57.635 34.615 0.00 0.00 0.00 1.85
136 137 8.725405 TTCAATATAGTGTTTGCCGAGATTAA 57.275 30.769 0.00 0.00 0.00 1.40
137 138 8.902540 ATTCAATATAGTGTTTGCCGAGATTA 57.097 30.769 0.00 0.00 0.00 1.75
138 139 7.807977 ATTCAATATAGTGTTTGCCGAGATT 57.192 32.000 0.00 0.00 0.00 2.40
140 141 8.902540 ATTATTCAATATAGTGTTTGCCGAGA 57.097 30.769 0.00 0.00 0.00 4.04
141 142 9.950680 AAATTATTCAATATAGTGTTTGCCGAG 57.049 29.630 0.00 0.00 0.00 4.63
203 204 9.527157 AGTGAATATAGTACTAGACTGATGCAT 57.473 33.333 8.85 0.00 39.39 3.96
204 205 8.926092 AGTGAATATAGTACTAGACTGATGCA 57.074 34.615 8.85 0.00 39.39 3.96
215 216 7.642978 CGCGACAAAAGTAGTGAATATAGTACT 59.357 37.037 0.00 0.00 38.20 2.73
216 217 7.430502 ACGCGACAAAAGTAGTGAATATAGTAC 59.569 37.037 15.93 0.00 0.00 2.73
217 218 7.475015 ACGCGACAAAAGTAGTGAATATAGTA 58.525 34.615 15.93 0.00 0.00 1.82
218 219 6.327934 ACGCGACAAAAGTAGTGAATATAGT 58.672 36.000 15.93 0.00 0.00 2.12
221 222 5.636121 TCAACGCGACAAAAGTAGTGAATAT 59.364 36.000 15.93 0.00 0.00 1.28
223 224 3.805422 TCAACGCGACAAAAGTAGTGAAT 59.195 39.130 15.93 0.00 0.00 2.57
225 226 2.811855 TCAACGCGACAAAAGTAGTGA 58.188 42.857 15.93 0.00 0.00 3.41
227 228 6.146510 TGAAATATCAACGCGACAAAAGTAGT 59.853 34.615 15.93 0.00 30.99 2.73
228 229 6.530567 TGAAATATCAACGCGACAAAAGTAG 58.469 36.000 15.93 0.00 30.99 2.57
230 231 5.351233 TGAAATATCAACGCGACAAAAGT 57.649 34.783 15.93 0.00 30.99 2.66
231 232 9.811655 ATATATGAAATATCAACGCGACAAAAG 57.188 29.630 15.93 0.00 39.18 2.27
235 236 9.592720 CAAAATATATGAAATATCAACGCGACA 57.407 29.630 15.93 0.00 39.18 4.35
237 238 8.286097 TGCAAAATATATGAAATATCAACGCGA 58.714 29.630 15.93 0.00 39.18 5.87
238 239 8.357966 GTGCAAAATATATGAAATATCAACGCG 58.642 33.333 3.53 3.53 39.18 6.01
248 249 9.589111 TCGTACAGTAGTGCAAAATATATGAAA 57.411 29.630 0.00 0.00 0.00 2.69
249 250 9.244799 CTCGTACAGTAGTGCAAAATATATGAA 57.755 33.333 0.00 0.00 0.00 2.57
251 252 8.797266 TCTCGTACAGTAGTGCAAAATATATG 57.203 34.615 0.00 0.00 0.00 1.78
254 255 9.245962 GTTATCTCGTACAGTAGTGCAAAATAT 57.754 33.333 0.00 0.00 0.00 1.28
256 257 7.321153 AGTTATCTCGTACAGTAGTGCAAAAT 58.679 34.615 0.00 0.00 0.00 1.82
257 258 6.684686 AGTTATCTCGTACAGTAGTGCAAAA 58.315 36.000 0.00 0.00 0.00 2.44
259 260 5.413523 TGAGTTATCTCGTACAGTAGTGCAA 59.586 40.000 0.00 0.00 43.09 4.08
261 262 5.481200 TGAGTTATCTCGTACAGTAGTGC 57.519 43.478 0.00 0.00 43.09 4.40
262 263 9.814507 GAATATGAGTTATCTCGTACAGTAGTG 57.185 37.037 5.11 0.00 42.61 2.74
263 264 9.557061 TGAATATGAGTTATCTCGTACAGTAGT 57.443 33.333 5.11 0.00 42.61 2.73
311 312 9.683270 AATGGGGCCCTAAATTTTAAAGTATAT 57.317 29.630 25.93 0.00 0.00 0.86
312 313 9.508721 AAATGGGGCCCTAAATTTTAAAGTATA 57.491 29.630 25.93 0.00 0.00 1.47
313 314 8.400619 AAATGGGGCCCTAAATTTTAAAGTAT 57.599 30.769 25.93 0.00 0.00 2.12
322 323 7.069455 GCGATATATAAAATGGGGCCCTAAATT 59.931 37.037 25.93 17.28 0.00 1.82
323 324 6.549736 GCGATATATAAAATGGGGCCCTAAAT 59.450 38.462 25.93 10.68 0.00 1.40
324 325 5.889289 GCGATATATAAAATGGGGCCCTAAA 59.111 40.000 25.93 8.45 0.00 1.85
325 326 5.044772 TGCGATATATAAAATGGGGCCCTAA 60.045 40.000 25.93 11.44 0.00 2.69
326 327 4.475381 TGCGATATATAAAATGGGGCCCTA 59.525 41.667 25.93 18.54 0.00 3.53
328 329 3.380320 GTGCGATATATAAAATGGGGCCC 59.620 47.826 18.17 18.17 0.00 5.80
332 333 3.625764 CCCGGTGCGATATATAAAATGGG 59.374 47.826 0.00 0.00 0.00 4.00
333 334 3.064820 GCCCGGTGCGATATATAAAATGG 59.935 47.826 0.00 0.00 0.00 3.16
334 335 3.064820 GGCCCGGTGCGATATATAAAATG 59.935 47.826 0.00 0.00 42.61 2.32
335 336 3.275999 GGCCCGGTGCGATATATAAAAT 58.724 45.455 0.00 0.00 42.61 1.82
336 337 2.616001 GGGCCCGGTGCGATATATAAAA 60.616 50.000 5.69 0.00 42.61 1.52
339 340 1.332144 GGGGCCCGGTGCGATATATA 61.332 60.000 17.79 0.00 42.61 0.86
341 342 3.315949 GGGGCCCGGTGCGATATA 61.316 66.667 17.79 0.00 42.61 0.86
352 353 2.442087 CCAGAAATTCGGGGGCCC 60.442 66.667 15.76 15.76 0.00 5.80
353 354 1.453928 CTCCAGAAATTCGGGGGCC 60.454 63.158 12.04 0.00 32.32 5.80
354 355 0.748367 GTCTCCAGAAATTCGGGGGC 60.748 60.000 12.04 2.71 31.83 5.80
355 356 0.462047 CGTCTCCAGAAATTCGGGGG 60.462 60.000 12.04 9.02 33.15 5.40
356 357 0.462047 CCGTCTCCAGAAATTCGGGG 60.462 60.000 12.04 6.38 32.32 5.73
357 358 1.090052 GCCGTCTCCAGAAATTCGGG 61.090 60.000 5.79 5.79 38.63 5.14
358 359 1.090052 GGCCGTCTCCAGAAATTCGG 61.090 60.000 0.00 0.00 40.72 4.30
359 360 1.090052 GGGCCGTCTCCAGAAATTCG 61.090 60.000 0.00 0.00 0.00 3.34
360 361 0.253327 AGGGCCGTCTCCAGAAATTC 59.747 55.000 0.00 0.00 0.00 2.17
363 364 1.415672 AACAGGGCCGTCTCCAGAAA 61.416 55.000 0.00 0.00 0.00 2.52
364 365 1.415672 AAACAGGGCCGTCTCCAGAA 61.416 55.000 0.00 0.00 0.00 3.02
365 366 0.543410 TAAACAGGGCCGTCTCCAGA 60.543 55.000 0.00 0.00 0.00 3.86
366 367 0.108138 CTAAACAGGGCCGTCTCCAG 60.108 60.000 0.00 0.00 0.00 3.86
367 368 1.980052 CTAAACAGGGCCGTCTCCA 59.020 57.895 0.00 0.00 0.00 3.86
368 369 1.449778 GCTAAACAGGGCCGTCTCC 60.450 63.158 0.00 0.00 0.00 3.71
369 370 0.460459 GAGCTAAACAGGGCCGTCTC 60.460 60.000 0.00 0.00 0.00 3.36
370 371 1.192146 TGAGCTAAACAGGGCCGTCT 61.192 55.000 0.00 0.00 0.00 4.18
371 372 0.107654 ATGAGCTAAACAGGGCCGTC 60.108 55.000 0.00 0.00 0.00 4.79
373 374 0.107703 TCATGAGCTAAACAGGGCCG 60.108 55.000 0.00 0.00 0.00 6.13
374 375 1.745653 GTTCATGAGCTAAACAGGGCC 59.254 52.381 1.76 0.00 0.00 5.80
375 376 2.436417 TGTTCATGAGCTAAACAGGGC 58.564 47.619 11.09 0.00 0.00 5.19
376 377 5.649782 AAATGTTCATGAGCTAAACAGGG 57.350 39.130 11.09 0.00 36.44 4.45
378 379 8.752766 ATTCAAAATGTTCATGAGCTAAACAG 57.247 30.769 11.09 0.00 36.44 3.16
518 519 8.747666 GTTTGTTTTCTACGCAATTGATTAACA 58.252 29.630 10.34 6.19 0.00 2.41
530 531 5.575019 TCTTTGAAGGTTTGTTTTCTACGC 58.425 37.500 0.00 0.00 0.00 4.42
622 623 1.677518 CGTATAAGCACACAGGGGCAA 60.678 52.381 0.00 0.00 0.00 4.52
625 626 0.814010 GCCGTATAAGCACACAGGGG 60.814 60.000 0.00 0.00 0.00 4.79
626 627 0.814010 GGCCGTATAAGCACACAGGG 60.814 60.000 0.00 0.00 0.00 4.45
627 628 1.151777 CGGCCGTATAAGCACACAGG 61.152 60.000 19.50 0.00 0.00 4.00
864 895 1.679032 GGGTCGGCATAGTTTTCTGCT 60.679 52.381 0.00 0.00 38.45 4.24
1014 2703 0.250234 CAAGGTCAGCGGGAAGATCA 59.750 55.000 0.00 0.00 0.00 2.92
1087 2776 1.227973 GCCCGATCATCCCCTTGAC 60.228 63.158 0.00 0.00 0.00 3.18
1209 2904 5.620206 TCAAGAGCCAGAAAAACAGATACA 58.380 37.500 0.00 0.00 0.00 2.29
1330 3031 3.988976 ACCTTTGCTAGAGAAGATGCA 57.011 42.857 0.00 0.00 0.00 3.96
1355 3056 4.393680 CGATAAAATCACGGAAACCCTTGA 59.606 41.667 0.00 0.00 36.57 3.02
1366 3067 2.205074 AGCTCTGCCGATAAAATCACG 58.795 47.619 0.00 0.00 0.00 4.35
1478 3179 2.795231 TCTTGGAGGAATCAAGCCAG 57.205 50.000 0.00 0.00 40.82 4.85
1480 3181 3.425659 AGTTTCTTGGAGGAATCAAGCC 58.574 45.455 0.00 0.00 40.82 4.35
1486 3187 2.560105 GCTGCAAGTTTCTTGGAGGAAT 59.440 45.455 24.28 0.00 38.16 3.01
1506 3207 3.055819 TCAGTAGGTCTCCAAGATGTTGC 60.056 47.826 0.00 0.00 31.64 4.17
1656 3361 2.285083 CTAATTTCAATCGGACCGCCA 58.715 47.619 9.66 0.00 0.00 5.69
1701 3406 3.455910 TGTATATGAAGTGGAGCAAGGCT 59.544 43.478 0.00 0.00 43.88 4.58
1858 3564 0.598065 GGGTTGATGAGGTTGCACAC 59.402 55.000 0.00 0.00 0.00 3.82
1927 3633 1.772836 AAGCAGGCATCCTTGATTCC 58.227 50.000 0.00 0.00 0.00 3.01
2284 4007 9.856162 AACTTAGAAGTCCTTACAAACCATAAA 57.144 29.630 0.00 0.00 38.57 1.40
2305 6425 7.033185 GGAAAAACAGAAACTGCAGAAACTTA 58.967 34.615 23.35 0.00 34.37 2.24
2314 6434 2.802247 GCATGGGAAAAACAGAAACTGC 59.198 45.455 0.00 0.00 34.37 4.40
2334 6471 3.197265 GCCAATTCCACATTAACCATGC 58.803 45.455 0.00 0.00 36.14 4.06
2335 6472 4.468765 TGCCAATTCCACATTAACCATG 57.531 40.909 0.00 0.00 39.07 3.66
2336 6473 4.080975 CCTTGCCAATTCCACATTAACCAT 60.081 41.667 0.00 0.00 0.00 3.55
2337 6474 3.260380 CCTTGCCAATTCCACATTAACCA 59.740 43.478 0.00 0.00 0.00 3.67
2338 6475 3.860641 CCTTGCCAATTCCACATTAACC 58.139 45.455 0.00 0.00 0.00 2.85
2379 6516 7.324935 TGTTATAAGCAAGGTAGACGATGAAA 58.675 34.615 0.00 0.00 0.00 2.69
2443 6585 5.743467 TCGCGTATTGCAAAGTAATAATGG 58.257 37.500 5.77 0.00 46.97 3.16
2511 6656 5.068329 TGCATGTTCCTGTATTGACAAACAA 59.932 36.000 0.00 0.00 38.90 2.83
2568 6714 2.038837 AGCGACGAGTGATCACGGA 61.039 57.895 19.85 0.00 36.20 4.69
2595 6741 2.030457 CGATTACATGAGTTTGGACGCC 59.970 50.000 0.00 0.00 0.00 5.68
2652 6798 5.118990 CGAACATGAGATCAGGTATGGTTT 58.881 41.667 0.00 0.00 40.26 3.27
2657 6803 5.065218 GCAAAACGAACATGAGATCAGGTAT 59.935 40.000 0.00 0.00 40.26 2.73
2660 6806 3.751621 GCAAAACGAACATGAGATCAGG 58.248 45.455 0.00 0.00 0.00 3.86
2678 6824 1.865788 GCAGGAATGGCAGAACGCAA 61.866 55.000 0.00 0.00 45.17 4.85
2681 6827 1.959042 ATAGCAGGAATGGCAGAACG 58.041 50.000 0.00 0.00 0.00 3.95
2682 6828 5.799213 AGTATATAGCAGGAATGGCAGAAC 58.201 41.667 0.00 0.00 0.00 3.01
2689 6835 5.186021 ACGAAGGGAGTATATAGCAGGAATG 59.814 44.000 0.00 0.00 0.00 2.67
2690 6836 5.334421 ACGAAGGGAGTATATAGCAGGAAT 58.666 41.667 0.00 0.00 0.00 3.01
2691 6837 4.737578 ACGAAGGGAGTATATAGCAGGAA 58.262 43.478 0.00 0.00 0.00 3.36
2692 6838 4.333690 GACGAAGGGAGTATATAGCAGGA 58.666 47.826 0.00 0.00 0.00 3.86
2693 6839 3.444388 GGACGAAGGGAGTATATAGCAGG 59.556 52.174 0.00 0.00 0.00 4.85
2694 6840 3.444388 GGGACGAAGGGAGTATATAGCAG 59.556 52.174 0.00 0.00 0.00 4.24
2695 6841 3.181426 TGGGACGAAGGGAGTATATAGCA 60.181 47.826 0.00 0.00 0.00 3.49
2696 6842 3.428532 TGGGACGAAGGGAGTATATAGC 58.571 50.000 0.00 0.00 0.00 2.97
2697 6843 6.415206 TTTTGGGACGAAGGGAGTATATAG 57.585 41.667 0.00 0.00 0.00 1.31
2698 6844 8.495160 TTATTTTGGGACGAAGGGAGTATATA 57.505 34.615 0.00 0.00 0.00 0.86
2699 6845 5.906772 ATTTTGGGACGAAGGGAGTATAT 57.093 39.130 0.00 0.00 0.00 0.86
2700 6846 6.811634 TTATTTTGGGACGAAGGGAGTATA 57.188 37.500 0.00 0.00 0.00 1.47
2701 6847 5.703730 TTATTTTGGGACGAAGGGAGTAT 57.296 39.130 0.00 0.00 0.00 2.12
2702 6848 5.502089 TTTATTTTGGGACGAAGGGAGTA 57.498 39.130 0.00 0.00 0.00 2.59
2703 6849 4.376225 TTTATTTTGGGACGAAGGGAGT 57.624 40.909 0.00 0.00 0.00 3.85
2704 6850 6.602009 AGTTATTTATTTTGGGACGAAGGGAG 59.398 38.462 0.00 0.00 0.00 4.30
2705 6851 6.486941 AGTTATTTATTTTGGGACGAAGGGA 58.513 36.000 0.00 0.00 0.00 4.20
2706 6852 6.376018 TGAGTTATTTATTTTGGGACGAAGGG 59.624 38.462 0.00 0.00 0.00 3.95
2707 6853 7.385778 TGAGTTATTTATTTTGGGACGAAGG 57.614 36.000 0.00 0.00 0.00 3.46
2708 6854 8.512138 ACTTGAGTTATTTATTTTGGGACGAAG 58.488 33.333 0.00 0.00 0.00 3.79
2709 6855 8.398878 ACTTGAGTTATTTATTTTGGGACGAA 57.601 30.769 0.00 0.00 0.00 3.85
2710 6856 7.989416 ACTTGAGTTATTTATTTTGGGACGA 57.011 32.000 0.00 0.00 0.00 4.20
2767 6913 9.846248 CCTCCATTTTAAAATAAGTGACTCAAG 57.154 33.333 12.98 0.00 0.00 3.02
2768 6914 8.802267 CCCTCCATTTTAAAATAAGTGACTCAA 58.198 33.333 12.98 0.00 0.00 3.02
2769 6915 8.167392 TCCCTCCATTTTAAAATAAGTGACTCA 58.833 33.333 12.98 0.00 0.00 3.41
2770 6916 8.575649 TCCCTCCATTTTAAAATAAGTGACTC 57.424 34.615 12.98 0.00 0.00 3.36
2771 6917 8.170730 ACTCCCTCCATTTTAAAATAAGTGACT 58.829 33.333 12.98 0.00 0.00 3.41
2772 6918 8.349568 ACTCCCTCCATTTTAAAATAAGTGAC 57.650 34.615 12.98 0.00 0.00 3.67
2783 6929 8.967918 CGATAGTGATATACTCCCTCCATTTTA 58.032 37.037 0.00 0.00 40.89 1.52
2784 6930 7.093289 CCGATAGTGATATACTCCCTCCATTTT 60.093 40.741 0.00 0.00 40.89 1.82
2785 6931 6.381420 CCGATAGTGATATACTCCCTCCATTT 59.619 42.308 0.00 0.00 40.89 2.32
2786 6932 5.894393 CCGATAGTGATATACTCCCTCCATT 59.106 44.000 0.00 0.00 40.89 3.16
2787 6933 5.193930 TCCGATAGTGATATACTCCCTCCAT 59.806 44.000 0.00 0.00 40.89 3.41
2788 6934 4.538891 TCCGATAGTGATATACTCCCTCCA 59.461 45.833 0.00 0.00 40.89 3.86
2789 6935 5.113446 TCCGATAGTGATATACTCCCTCC 57.887 47.826 0.00 0.00 40.89 4.30
2790 6936 7.648039 AATTCCGATAGTGATATACTCCCTC 57.352 40.000 0.00 0.00 40.89 4.30
2791 6937 9.543231 TTTAATTCCGATAGTGATATACTCCCT 57.457 33.333 0.00 0.00 40.89 4.20
2801 6947 8.286800 CGGCATAATTTTTAATTCCGATAGTGA 58.713 33.333 5.36 0.00 38.02 3.41
2802 6948 8.286800 TCGGCATAATTTTTAATTCCGATAGTG 58.713 33.333 8.49 0.00 39.56 2.74
2803 6949 8.287503 GTCGGCATAATTTTTAATTCCGATAGT 58.712 33.333 13.19 0.00 44.96 2.12
2804 6950 7.477422 CGTCGGCATAATTTTTAATTCCGATAG 59.523 37.037 13.19 9.08 44.96 2.08
2805 6951 7.292292 CGTCGGCATAATTTTTAATTCCGATA 58.708 34.615 13.19 0.00 44.96 2.92
2806 6952 6.140110 CGTCGGCATAATTTTTAATTCCGAT 58.860 36.000 13.19 0.00 44.96 4.18
2807 6953 5.503498 CGTCGGCATAATTTTTAATTCCGA 58.497 37.500 8.49 8.49 41.78 4.55
2808 6954 4.673311 CCGTCGGCATAATTTTTAATTCCG 59.327 41.667 0.00 0.00 37.21 4.30
2863 7009 1.713830 GTTGAAGACGGCCGTATGC 59.286 57.895 34.36 29.07 40.16 3.14
2873 7019 2.106418 GCCGACAAAAACGTTGAAGAC 58.894 47.619 0.00 0.00 0.00 3.01
2874 7020 1.738350 TGCCGACAAAAACGTTGAAGA 59.262 42.857 0.00 0.00 0.00 2.87
2875 7021 2.181426 TGCCGACAAAAACGTTGAAG 57.819 45.000 0.00 0.00 0.00 3.02
2876 7022 2.853731 ATGCCGACAAAAACGTTGAA 57.146 40.000 0.00 0.00 0.00 2.69
2877 7023 3.132160 TCTATGCCGACAAAAACGTTGA 58.868 40.909 0.00 0.00 0.00 3.18
2878 7024 3.529634 TCTATGCCGACAAAAACGTTG 57.470 42.857 0.00 0.00 0.00 4.10
2879 7025 4.000988 AGATCTATGCCGACAAAAACGTT 58.999 39.130 0.00 0.00 0.00 3.99
2880 7026 3.370978 CAGATCTATGCCGACAAAAACGT 59.629 43.478 0.00 0.00 0.00 3.99
2881 7027 3.370978 ACAGATCTATGCCGACAAAAACG 59.629 43.478 0.00 0.00 0.00 3.60
2882 7028 4.391830 TGACAGATCTATGCCGACAAAAAC 59.608 41.667 0.00 0.00 0.00 2.43
2883 7029 4.574892 TGACAGATCTATGCCGACAAAAA 58.425 39.130 0.00 0.00 0.00 1.94
2884 7030 4.183865 CTGACAGATCTATGCCGACAAAA 58.816 43.478 0.00 0.00 0.00 2.44
2885 7031 3.195610 ACTGACAGATCTATGCCGACAAA 59.804 43.478 10.08 0.00 0.00 2.83
2886 7032 2.760650 ACTGACAGATCTATGCCGACAA 59.239 45.455 10.08 0.00 0.00 3.18
2887 7033 2.359214 GACTGACAGATCTATGCCGACA 59.641 50.000 10.08 0.00 0.00 4.35
2888 7034 2.621055 AGACTGACAGATCTATGCCGAC 59.379 50.000 10.08 0.00 0.00 4.79
2889 7035 2.620585 CAGACTGACAGATCTATGCCGA 59.379 50.000 10.08 0.00 0.00 5.54
2890 7036 2.360483 ACAGACTGACAGATCTATGCCG 59.640 50.000 10.08 0.00 0.00 5.69
2891 7037 3.549827 CGACAGACTGACAGATCTATGCC 60.550 52.174 10.08 0.00 0.00 4.40
2892 7038 3.549827 CCGACAGACTGACAGATCTATGC 60.550 52.174 10.08 1.50 0.00 3.14
2893 7039 3.629855 ACCGACAGACTGACAGATCTATG 59.370 47.826 10.08 0.00 0.00 2.23
2894 7040 3.892284 ACCGACAGACTGACAGATCTAT 58.108 45.455 10.08 0.00 0.00 1.98
2895 7041 3.351794 ACCGACAGACTGACAGATCTA 57.648 47.619 10.08 0.00 0.00 1.98
2896 7042 2.208132 ACCGACAGACTGACAGATCT 57.792 50.000 10.08 5.64 0.00 2.75
2897 7043 5.950758 ATATACCGACAGACTGACAGATC 57.049 43.478 10.08 3.28 0.00 2.75
2898 7044 7.818997 TTTATATACCGACAGACTGACAGAT 57.181 36.000 10.08 0.00 0.00 2.90
2899 7045 7.338703 ACTTTTATATACCGACAGACTGACAGA 59.661 37.037 10.08 0.00 0.00 3.41
2900 7046 7.432545 CACTTTTATATACCGACAGACTGACAG 59.567 40.741 10.08 0.00 0.00 3.51
2901 7047 7.121611 TCACTTTTATATACCGACAGACTGACA 59.878 37.037 10.08 0.00 0.00 3.58
2902 7048 7.478322 TCACTTTTATATACCGACAGACTGAC 58.522 38.462 10.08 1.49 0.00 3.51
2903 7049 7.634671 TCACTTTTATATACCGACAGACTGA 57.365 36.000 10.08 0.00 0.00 3.41
2904 7050 8.873215 AATCACTTTTATATACCGACAGACTG 57.127 34.615 0.00 0.00 0.00 3.51
2909 7055 9.454585 CGTCTAAATCACTTTTATATACCGACA 57.545 33.333 0.00 0.00 0.00 4.35
2910 7056 9.455847 ACGTCTAAATCACTTTTATATACCGAC 57.544 33.333 0.00 0.00 0.00 4.79
2945 7091 9.025041 CCCTATCTTTTGGTCTAAATCACTTTT 57.975 33.333 0.00 0.00 0.00 2.27
2946 7092 8.170730 ACCCTATCTTTTGGTCTAAATCACTTT 58.829 33.333 0.00 0.00 0.00 2.66
2947 7093 7.611855 CACCCTATCTTTTGGTCTAAATCACTT 59.388 37.037 0.00 0.00 0.00 3.16
2948 7094 7.112779 CACCCTATCTTTTGGTCTAAATCACT 58.887 38.462 0.00 0.00 0.00 3.41
2949 7095 6.183360 GCACCCTATCTTTTGGTCTAAATCAC 60.183 42.308 0.00 0.00 0.00 3.06
2950 7096 5.885912 GCACCCTATCTTTTGGTCTAAATCA 59.114 40.000 0.00 0.00 0.00 2.57
2951 7097 5.007724 CGCACCCTATCTTTTGGTCTAAATC 59.992 44.000 0.00 0.00 0.00 2.17
2952 7098 4.881850 CGCACCCTATCTTTTGGTCTAAAT 59.118 41.667 0.00 0.00 0.00 1.40
2953 7099 4.258543 CGCACCCTATCTTTTGGTCTAAA 58.741 43.478 0.00 0.00 0.00 1.85
2954 7100 3.262405 ACGCACCCTATCTTTTGGTCTAA 59.738 43.478 0.00 0.00 0.00 2.10
2955 7101 2.835764 ACGCACCCTATCTTTTGGTCTA 59.164 45.455 0.00 0.00 0.00 2.59
2956 7102 1.628846 ACGCACCCTATCTTTTGGTCT 59.371 47.619 0.00 0.00 0.00 3.85
2957 7103 2.109425 ACGCACCCTATCTTTTGGTC 57.891 50.000 0.00 0.00 0.00 4.02
2958 7104 2.835764 TCTACGCACCCTATCTTTTGGT 59.164 45.455 0.00 0.00 0.00 3.67
2959 7105 3.536956 TCTACGCACCCTATCTTTTGG 57.463 47.619 0.00 0.00 0.00 3.28
2960 7106 5.391629 GGTTTTCTACGCACCCTATCTTTTG 60.392 44.000 0.00 0.00 0.00 2.44
2961 7107 4.698780 GGTTTTCTACGCACCCTATCTTTT 59.301 41.667 0.00 0.00 0.00 2.27
2962 7108 4.259356 GGTTTTCTACGCACCCTATCTTT 58.741 43.478 0.00 0.00 0.00 2.52
2963 7109 3.262405 TGGTTTTCTACGCACCCTATCTT 59.738 43.478 0.00 0.00 0.00 2.40
2964 7110 2.835764 TGGTTTTCTACGCACCCTATCT 59.164 45.455 0.00 0.00 0.00 1.98
2965 7111 3.195661 CTGGTTTTCTACGCACCCTATC 58.804 50.000 0.00 0.00 0.00 2.08
2966 7112 2.679930 GCTGGTTTTCTACGCACCCTAT 60.680 50.000 0.00 0.00 0.00 2.57
2967 7113 1.338389 GCTGGTTTTCTACGCACCCTA 60.338 52.381 0.00 0.00 0.00 3.53
2968 7114 0.605589 GCTGGTTTTCTACGCACCCT 60.606 55.000 0.00 0.00 0.00 4.34
2969 7115 0.887387 TGCTGGTTTTCTACGCACCC 60.887 55.000 0.00 0.00 0.00 4.61
2970 7116 0.237498 GTGCTGGTTTTCTACGCACC 59.763 55.000 0.00 0.00 43.68 5.01
2971 7117 3.748021 GTGCTGGTTTTCTACGCAC 57.252 52.632 0.00 0.00 43.22 5.34
2972 7118 0.887387 GGGTGCTGGTTTTCTACGCA 60.887 55.000 0.00 0.00 0.00 5.24
2973 7119 1.873863 GGGTGCTGGTTTTCTACGC 59.126 57.895 0.00 0.00 0.00 4.42
2974 7120 1.908066 GCGGGTGCTGGTTTTCTACG 61.908 60.000 0.00 0.00 38.39 3.51
2975 7121 1.583495 GGCGGGTGCTGGTTTTCTAC 61.583 60.000 0.00 0.00 42.25 2.59
2976 7122 1.302993 GGCGGGTGCTGGTTTTCTA 60.303 57.895 0.00 0.00 42.25 2.10
2977 7123 2.597510 GGCGGGTGCTGGTTTTCT 60.598 61.111 0.00 0.00 42.25 2.52
2978 7124 2.909965 TGGCGGGTGCTGGTTTTC 60.910 61.111 0.00 0.00 42.25 2.29
2979 7125 2.713531 ATCTGGCGGGTGCTGGTTTT 62.714 55.000 0.00 0.00 42.25 2.43
2980 7126 1.847798 TATCTGGCGGGTGCTGGTTT 61.848 55.000 0.00 0.00 42.25 3.27
2981 7127 2.257409 CTATCTGGCGGGTGCTGGTT 62.257 60.000 0.00 0.00 42.25 3.67
2982 7128 2.687200 TATCTGGCGGGTGCTGGT 60.687 61.111 0.00 0.00 42.25 4.00
2983 7129 1.399744 TACTATCTGGCGGGTGCTGG 61.400 60.000 0.00 0.00 42.25 4.85
2984 7130 0.681733 ATACTATCTGGCGGGTGCTG 59.318 55.000 0.00 0.00 42.25 4.41
2985 7131 1.344763 GAATACTATCTGGCGGGTGCT 59.655 52.381 0.00 0.00 42.25 4.40
2986 7132 1.344763 AGAATACTATCTGGCGGGTGC 59.655 52.381 0.00 0.00 41.71 5.01
2987 7133 2.028930 GGAGAATACTATCTGGCGGGTG 60.029 54.545 0.00 0.00 0.00 4.61
2988 7134 2.249139 GGAGAATACTATCTGGCGGGT 58.751 52.381 0.00 0.00 0.00 5.28
2989 7135 1.202582 CGGAGAATACTATCTGGCGGG 59.797 57.143 0.00 0.00 0.00 6.13
2990 7136 1.402984 GCGGAGAATACTATCTGGCGG 60.403 57.143 0.00 0.00 0.00 6.13
2991 7137 1.542030 AGCGGAGAATACTATCTGGCG 59.458 52.381 0.00 0.00 33.17 5.69
2992 7138 2.558795 TCAGCGGAGAATACTATCTGGC 59.441 50.000 0.00 0.00 0.00 4.85
2993 7139 5.398603 AATCAGCGGAGAATACTATCTGG 57.601 43.478 0.00 0.00 0.00 3.86
2994 7140 7.062839 GCTTAAATCAGCGGAGAATACTATCTG 59.937 40.741 0.00 0.00 0.00 2.90
2995 7141 7.093992 GCTTAAATCAGCGGAGAATACTATCT 58.906 38.462 0.00 0.00 0.00 1.98
2996 7142 6.868864 TGCTTAAATCAGCGGAGAATACTATC 59.131 38.462 0.00 0.00 43.37 2.08
2997 7143 6.647067 GTGCTTAAATCAGCGGAGAATACTAT 59.353 38.462 0.00 0.00 43.37 2.12
2998 7144 5.983720 GTGCTTAAATCAGCGGAGAATACTA 59.016 40.000 0.00 0.00 43.37 1.82
2999 7145 4.811557 GTGCTTAAATCAGCGGAGAATACT 59.188 41.667 0.00 0.00 43.37 2.12
3000 7146 4.570772 TGTGCTTAAATCAGCGGAGAATAC 59.429 41.667 0.00 0.00 43.37 1.89
3001 7147 4.765273 TGTGCTTAAATCAGCGGAGAATA 58.235 39.130 0.00 0.00 43.37 1.75
3002 7148 3.609853 TGTGCTTAAATCAGCGGAGAAT 58.390 40.909 0.00 0.00 43.37 2.40
3003 7149 3.052455 TGTGCTTAAATCAGCGGAGAA 57.948 42.857 0.00 0.00 43.37 2.87
3004 7150 2.760634 TGTGCTTAAATCAGCGGAGA 57.239 45.000 0.00 0.00 43.37 3.71
3005 7151 3.127548 ACAATGTGCTTAAATCAGCGGAG 59.872 43.478 0.00 0.00 43.37 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.