>input_sequence_62012
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------------------------------------------------ATGTCAGAGCTTCGTGATCTTCCCGCTGACCT
TGCAGCGGGGTCTGACAAAAGGTCATATGTGATCAAGGTAGACGGCTATTCAAGAGTCAAGGGGATGATCGGGCATGGCG
ACAAAGTGAAATCTGCCCCTTTCAGTGTTGGAGGC------TACGACTGGGTTTTGTGGTTCTACCCAAACGGCAGCGAC
ATCACACATTATGAAGCCGGTTATGTATCTGTTTTTCTGGCTCTTGATTCTGGTTTTGCCACGGACGTGAGGGCGAAATT
TAGAATTAGTTTGCTT------GACAAGAATGGAGAACCAGACATTACAAGAAGCAAGACCAATCCCGAATGCATCTTCT
CTAGCAAAGGTTCATTCAAGGGTTTCCGTGATTTTATCGGCAGAGCTTATCTTGAGAATCCAAGGAATCTAAGCAACGAC
AGTGTCAGCATCATGTGCCATGTTACTGTCGTGAAGAATATCCACAAAGGTAATCGGTCTGGCTTGATTCCTCCAAGAAA
CTTGCAGCAACATCTTGGAGACCTACTGAAGAGCATGGATGGAGCCGACGTGACCTTTCATGTCGGCGGGGAGAGTTTCT
TGGCTCATAGGGCCGTGCTCG----CCGCTCGGTCATCCGTATTCAGAGCGGAGCTCTTTGGCGGCATGAAGGAGAAAGC
TGGCGGTCCGATTGAAATTAGTGACATGGAAAGTGACGTGTTCAAAGCCTTGCTCCACTTCATATACACAGACGAG-TAT
GAGCCTGTTCCTGAGATGACCGATGGATGTGAAGCACGGAGAGAAGCGGTGATGGCTGGCCATCTACTTGTTGCAGCAGA
CAGGTACAATATCGAGGGGCTGAAGCTGATATGCGAAGAGAGGGTGTGCAACCTCATCAACCCTGACATCGTGGCGACTA
GTTTGGCTCTAGCTGAGCAGCACGGCTTCCATGGAATCAAGGATGCCTGCTTTGAGTTCCTCGCTTCGCCTTCCAATTTG
GAGGCGATGAT----------------GAGCATCTCAAGAATAGCTGCCCATCAGTTCTCAAGGAGCTGGCTGCTAGCTT
CCTGCCCGCCGAACTGA---------------------------------------------------------------
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>chr1A_1_TraesCS1A01G070800
GTGCTTCATGACCCCAATCAGGGCATCACAGATCAGCTTAATTTAGGTTGTTTTTTCTACTGAATAATTATATCAATGTG
TCTATATATTTATCTTGGTAAACACTGTATATTAAATAATTACATTTTCTTATTTCTTAATCTCGGCAAACACTATATTG
AATAATTTTATATTAATATTGTTAGTTTCATATTTTTGCACATATGCATCAGTCTAGTACTATATTCACTACTTTTGTCG
CGTTGATATTTCATATATTTTGCACTACTGTACGAGATAACTCATATTCAAATTTATATGATTAACTGAATATATACTTT
AAAATTTAGGGCCCCATTTTATATATCGCACCGGGCCCCCGAATTTCTGGAGACGGCCCTGTTTAGCTCATGAACATTTT
GAATTTTTACCAACATTTTCTCAGATCCATGTATTATATTTTTAATGTAGTGAATGTTTTTTCATGAAACGTGAAAAAAT
TGGAACATCAATTCCCCTGTTCTTCTTAGTACAAATTTTGTTAATCAATTGCGTAGAAAACAAACCTTCAAAGAGAAAAA
CTTGGTAGTACGCACTCAGGAGTCCAGGCTCAGCCTGTTGCACTTGCACGCTCCGAGCGCCCTTGCCCCTGTGTGCTTAT
------------------------------ACGGCCGCCGGTGACACTGTGTGCCGCTCCACTGAGCTCTCCGCGCTAGC
TGGTTACAGGATCGGGAACGACAGCAGTCTTCGGAGTAGACGCCATGAAGGCGTCGTGCATTGGCCGGACTCGACCGCGC
CCAGGAGATCAGCGTTGATACGCATCTGAAGATAGCTATCCCAATCTTCCTTCGTTAGGATTCTTATTTGACATGTTATC
TGTTCGGTTTAAATAGCAGAAAACTATGCCGACCCCAAGATCTATTAGAGATCTTATTTGGCATGTATATATATCTGCCT
TGTATAG-------------------------------------------------------------------------
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-----------------------------------------------------------------ACGCAGGGAATCTCT
CATTGTCGCCGTTCTTCCATCGGAGTGCAAATCTAAGAGACGACAAGAATGTCAGAGCTTCGTGATCTTCCCGCTGACCT
TGCAGCGGGGTCTGACAAAAGGTCATATGTGATCAAGGTAGACGGCTATTCAAGAGTCAAGGGGATGATCGGGCATGGCG
ACAAAGTGAAATCTGCCCCTTTCAGTGTTGGAGGC------TACGACTGGGTTTTGTGGTTCTACCCAAACGGCAGCGAC
ATCACACATTATGAAGCCGGTTATGTATCTGTTTTTCTGGCTCTTGATTCTGGTTTTGCCACGGACGTGAGGGCGAAATT
TAGAATTAGTTTGCTT------GACAAGAATGGAGAACCAGACATTACAAGAAGCAAGACCAATCCCGAATGCATCTTCT
CTAGCAAAGGTTCATTCAAGGGTTTCCGTGATTTTATCGGCAGAGCTTATCTTGAGAATCCAAGGAATCTAAGCAACGAC
AGTGTCAGCATCATGTGCCATGTTACTGTCGTGAAGAATATCCACAAAGGTAATCGGTCTGGCTTGATTCCTCCAAGAAA
CTTGCAGCAACATCTTGGAGACCTACTGAAGAGCATGGATGGAGCCGACGTGACCTTTCATGTCGGCGGGGAGAGTTTCT
TGGCTCATAGGGCCGTGCTCG----CCGCTCGGTCATCCGTATTCAGAGCGGAGCTCTTTGGCGGCATGAAGGAGAAAGC
TGGCGGTCCGATTGAAATTAGTGACATGGAAAGTGACGTGTTCAAAGCCTTGCTCCACTTCATATACACAGACGAG-TAT
GAGCCTGTTCCTGAGATGACCGATGGATGTGAAGCACGGAGAGAAGCGGTGATGGCTGGCCATCTACTTGTTGCAGCAGA
CAGGTACAATATCGAGGGGCTGAAGCTGATATGCGAAGAGAGGGTGTGCAACCTCATCAACCCTGACATCGTGGCGACTA
GTTTGGCTCTAGCTGAGCAGCACGGCTTCCATGGAATCAAGGATGCCTGCTTTGAGTTCCTCGCTTCGCCTTCCAATTTG
GAGGCGATGAT----------------GAGCATCTCAAGAATAGCTGCCCATCAGTTCTCAAGGAGCTGGCTGCTAGCTT
CCTGCCCGCCGAACTGAAAGCGGCCAAAGATATTATCATGACAATTTAGTATTGTGGCTAGTCATCGTTGCATCTAATCT
AATTTAGTATCTATGGTCTTACCTATTTCTCTATGTTGATTGCATGTACTATCTAGATCCAATTTAGCAATCAGAATGCG
AATTGATTGGTGATTCCTGTGTCTTGTATTTGCTGGCATGCATGACTAGTGTCG-AACTGAATTTCTTGTGCTTGCTGCA
GTTTTCTTTATGGTTTGTA-------------------------------------------------------------
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----------------AGGACTTCTAAGTTTCTGCAGTTT-----------------CTGTTTTTCCCATGCATGGTTAA
TGTGGAATTGGCAAGGCTTTTTTATAGACTGAAATTTTCATCGTCTACCTTGCTTATAACAAAGATATCTTCTTAG---T
GATTCCAAGAATAT--TTTTTTTGCCATTATTACTTTGCAATACGCG--AAAAAACCTTGAATATT-ATTTCCCAATCAA
TCCCGAGGCTTCAGTTTGTTTGTCAATACAGGAACATGCATACTTCTTGCACCTGCAGCCTGAATTTCTA-TTTCCGTGA
TCACTCGTCGCTGACTTTACGGCGTCCAAACTCATGTAATCGTCGGTAACGAAAAGCATGCAAGAGTCACAACAGATAAA
CCATACCTGATCTCATGTTCGTTTTGCGTTCTGCCATTCCTGCTATATACTCCCTTCGTCCCAAAATAAATAACTCAAGT
TTATACTAGCTCTAGTATAAAGTTAGTATAAACTTGAGTCACTTATTTTAAAATGGAGGGAGTATATCACTATCGGAATT
AAAAATTATGCCGACGGCACGCAGCCGTAGGCATAGGCCCGAAAGCCGGCATACGGCCGTCTTCAACGTTTTTGTCGGCA
TAGATCTGTCAGTCTGTCGGTATATAAAAGTGATTTAGACGTTTCAAAAAAAAAGTGATTTAGACCAAAAGATAGGGTGC
GTAGAAAACCAGCACCCGCCAGATAGTATTCTCCGCTGATTTAAGCACATTGTCACACAGCTCAGACACAAAGCTATGCA
T
>chr1D_382
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-------------------------------------------------------------TTTAGCTCATGAACATTTT
GAATTTTTACCAACATTTTCTAAGATCCATGTACTATATTTTTAATGTAGTGAATGTTTTTTCATGAAACGTGAAAAAAT
TGCAACATCAATTCCCCTGTTCTTCTTAGTACAAATTT-GTTAATCAATTACGTAGAAAACAAACCTTCAAAGAAAAAAA
CTTGGTAGTACGCACTCAGGAGTCCAGGCTCAGCCTGTTGCACTTGCACGCTCCGAGCGCCC------CTGTGTGCTTAT
ACGGCCGGGTCATCCGCCCGCCCCACGCCAACGGCCGCCGGTGACACTGTG--CCGCTCCACTGAGCTCTCCGCGCTAGC
TGGTTACAGGATCGGGAACGACAGCAGTCTTCGGAGTAGACGCCATGAAGGCGTCGTGCATTGGCTGGACTCGACCGCGC
CCAGGAGATCAGCGTTGATACGCATCTGAAGATAGCTATCCCAATCTTCCTTGGTTAGGATTCTTATTTGGCATGTTATC
TGTTCGGTTTAAATGGCAGAAAACTATGCCGACCCCAAGATCTATTAGAGATCTTATTTGGCATGTATATATATCTGCCT
TGTATAG-------------------------------------------------------------------------
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-----------------------------------------------------------------ACGCAGGGAATCTCT
CATTGTCGCCGTTCTTCCATCGGAGAGCAAATCTAAGAGACGGCAAGAATGTCAGAGCTTCGCGATCTTCCCGCAGTCCT
TGCAGCGGGGTCTGACGAAAGGTCATATGTGATCGAGGTAGACGGCTATTCAAGAATCAAGGGGATGATCGGGCATGGCG
ACAAAGTGAAATCTGCCCCTTTCAGTGTTGGAGGCTACGTCTACGACTGGGTTTTGTGGTTCTACCCAAACGGCAGCGAC
ATCACACATTATGAAGCCGGTTACGTATCTGTTTTTCTGGCTCTTGATTCTGGTTTTGCCACGGACGTGAGGGCGAAATT
TAGAATTACTTTGCTT------GACAAGAATGGGGAACCAGACATTACAAGAAGCAAGACCAATCCCGAACGCATCTTCT
CTAGCAAAGGTTCATGCAAGGGTTTCAGTGATTTTGTCGGCAGAGCTTATCTTGAGAATCCAAGGACTCTAAGCAACGAT
AGTGTCAGCATCATGTGCCATGTTACTGTCGTGAAGAATATCCACAAAGGTGATCGGCTTATCGTGGTTACTTCAAGAAA
CTTGCATCAACATCTTGGAGACCTACTAAAGAGCATGGATGGAGCCGACGTGACCTTTCATGTCGGCGGGGAGAGTTTCT
CGGCTCATAGGGTCGTGCTCG----CCGCTCGGTCATCCGTATTCAGAGCGGAGCTCTTTGGCGGCATGAAGGAGAAAGC
CGGTGGTCCGATTGAAATTAGTGACATGGAAAGTGATGTGTTCAAGGCCTTGCTCCACTTTATATACACAGACGAG-TAT
GAGCCTGTTCCTGAGATGACCGATGGATGTGAAGCACGGAGAAAAGCGGTGATGGCTGGCCATCTACTTGTTGCAGCAGA
AAGATACAATATCGAGAGGCTGAAGCTGATATGCGAAGAGAGGATGTGCAACCTCATCAACCCTGACATCGTGGCGACTA
GTTTGGCTCTAGCTGAGCAGCACGGCTTCCATACATTCAAGGATGCCTGCTTTGAGTTCCTCGCTTCGCCTTCCAATCCA
GAGGCGATGATGGCAAGTGATGGTTACGAGCATCTGAAGAATAGCTGCCCATCAGTTCTCAAGGAGCTGGCTGCTAGCTT
CCTGCCTGCCGAACTGAAAGCGGCCAAAGATATTATCATGACAATTTAGTGTTGTGGCTAATCATCGTTGCATCTAATCT
AATTTAGTATCTATGGTCTTACCTATTTCTCTATATTGATTGCATGTATACTTCTTGCACTCGTCGCTGCACCTATTTCT
CA------------------------------------------------------------------------------
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-----------------------------AGGAACATGCATACTTCTTGCACCTGCAGCCTGAATTTCAATTTGCCGTGA
TCACTCTTCGCTGACTTTACAGCTTCCAAACTCATGTAATCGTCGGTAACGAAA--------------------------
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>chr1A_933
TACGTGATCAAGATAGACGAATACTCCAGGATCAAGCGGCAAACCGAGCGTGGAAAATACGTGAAATCGACCCCTTTCAG
TGTTGGAGGTCACGACTGGGTTGTGTGGTATTTCCCGAACGGTTGCCACACCGAAAAGTACGAAGCCGGTTTCATATCTG
TTTTTCTAGCTCTTGATTCCGCTGCGTCGAAGAATGTGAGGGCCAATGTTGGATTTAGTCTGTTTCCTGTTGGCAAGGAG
GGGGAACCAGTGGGGTCATATAACAAGACCACCGAACATATCTTCCCTAGCAAAGGTTCAGACTGGGGTTTCCCTAACTT
TATCAAGAAGGCAGATCTTGAGGGATCAGTGTATCTAAGGAAAGACAGACTCAGAATCATGTGCGATGTTACTGTCGTGA
AGTATGGCCACAATGCTAATCGGCTTAGCTTGGTTCCTCCAAGCAACTTGCATCAGCATCTCGGCGACCTCCTAAAGAGC
ATGGATGGAGCGGACGTCACCTTTCATGTTGGCGGGGAGAGTTTCTTGTCTCATAGGTCCATTCTCGCCGCTCGGTCGTC
TGTCTTCAGAGCGGAGCTCTTCGGTGCTATGAAGGAGGACGCCGGTCGCCCAATTGAAATCAGTGATATGGAACCTGATG
TATTCAGATCGTTGCTTCACTTCATATACACCGACTCACCACCCATTCGTATGATGACCAATGGAGGTCAAGCACGTAGA
GATGTGGCGATGGCTGGCCATCTTCTTGTTGCAGCTGACAGGTATAACATTGAGAGGCTGAAGCTGATTTGTGAAGAGAA
GTTATGCAAGCTCATCGACTCCGACATCGTGGCGACCAGTCTGGCTCTAGCTGAGCAGCACAACTCCCGCAGACTCAAGG
AAGCTTGCTTTCAGTTCCTCATTTCTCTTTCCAATTTGGAGGCGATGATGGCAAGTGATGGTTACGAGCATCTGAAGAAT
AGTTGCCCATCAGTTCTCAAGGAGCTGGCTGTTAGCTTCCTGCCTGCTGAGCTGAAAGTGGTCAAAGATATTATCATGAC
AACTTAGTAGCATGGCAATGATCATAGCATCTTATCTATTTTAGTATCCATATCTTCTACCATAGTACCTGCAAAAGAGC
TTATCTCTATAAATATCTGCATATCCACTTTGCAATCAGAATGCGAATTGATTGCGCGATTCCTGTGTTCTTTTATTTGC
TGGGATGCAATATTAACGTCGAACTGGATTTGATGTCCTTGCTGCATGCATTTTTTGTTACGGCTTTTAATGATTTCCAA
GGTTCTGCCGTTAGCTCACTCCATAGAAACACAAATGTGCTAGATATTTTTATGATGGAAGGGATTTCTCCATGATTTTT
TTGATAGAAGGGATTCTATGTAAAATCTGGGTTCCGGCGTTAGCTCATCTTATATATGCAGTTTTTGTTACTGTTTTTAA
TGATTTCCAAGGTTCTGCAGTTTGTGCTCCATCCATAGTCCTGTTTTCCCCTTTTTTAGTGTGGCACTGCCAAGTTTTTG
ATGGACTGAAAAATTCACCTACCTTGCTTAATGAATATATTGGCTCAGTGATTCCAAGCATAAAGTTCTTGACATGATTA
ATTTGCGTATGGAGAACTGCTCAATCTCGAGGCTTCAGTAGGCTTATCACTCTGGGAACATGCGTATACAGGTGTACTTG
GGCCCACTTTTCTTCATAATCAAGTCGTCGGTAATAAGCACCTTGGCGGCGTGTGAGGCCGTGATCTTCAGTAGCTGGTT
CTGTAATAAGTAGACAGCTCTTTTGTAGTTGCTCTAGTCTTTTCTTATGCTGTTAAGTGTGGTTGGTTCCGTCAGTTGAT
ATAGGATGGTTAATGTGTCGACCTCAGTCTATGGATTTGTTACCTGGGGTAAAGGGTCGTTGGTGATGTGCTGCGGCTGT
AACCTGGGGGTAAAGGTCTTCCCCTTCACTCAAACTGATCCTAGGTTCGTTTATCAGTTCCATATGAATGAAATTACAGG
CAAATATGCTCCTTTCCTTACAAAAATAGTGTCGGTAATTAAACACATCCAGGTGGAGGCTGGACAACAGATGGCAGCAT
ATGTAAGTCGGGCGGCGCGAAGTCGAGCTGAATGCGAGAGAAGCACGGCGACAGCAGCGTGACAGCAATGCCGGGTTAGG
CCAAGGTCACCATGGACGAGAGCGGGATCGAGAGGGGTGTCGGGCTAAAGTGACAAGTGAGTCCAGCAGGGCGAGTCGCG
CAAGGGCATCTGCCCAGTAAATTTTGACCCGTAGCTAATCGCGAGCCATTTTCACCAATCAGTGGCATTCGGCCTGTGAT
TTCTTCAAATTCCTCGTGTGGGTAAATCTGGGTTCTGGCATTAAAAATACAGACGTTCGGTGCGGCTCCACGCCCATGAA
GGCGTCGTGCAGTGCATGGGCCGGACTCGACCGTGTCCAAGAGGTCAGCGTTGATACGCATCCGAAGCTAGTTATCCCAG
TGTTCCTAGATTAGGATTCTTATTTGGCATGTAATCTGCTCAGTTTAAATGGCAGCAAAGACCTAGAGTTCTTATTTGGC
ATGTATCTGCGTTTGATTTGCTTCGAGACAGATCGATCGAACTTCCCACGGTACGTACTATATAGACGCAGGGAATTTCA
CGTTGTTGCCGTTATTCCATCCGGGTGC-AATCTAAGGGACGACAAGAATGTCAGAGCGTCACGATCTTGCTGCTGCCAT
TGTAGGGGGATCGGAGCAAAGGTCATGTGTGATCAAGATAGACAGCTACTCAAGAATCATGGGGATG---GAGCGTGGCA
AGTGCGTGCAATCTGTCCCATTCAGCGTTGGGGGTCACG------ACTGGGTTCTCCGGTACTACCCAAACGGCTGCGAC
AGCAAACATTATGAAGCCGGTTCCATATCTGTTTTCCTAGCTCTTGATTCTGATTCCTCCAAGGATGTGAGGGCAAAATT
TAGATTCGCTTTGCTC------GACAAGGACGGGGAACCAGTGCGTTCAAAAGGCAAGACCGCCCGCGAACGCATCTTCT
CTAGCAAAGGTTCTGATAAAGGTTTCAGTAATTTTATCAAGAAATATTTTCTTGAGAATTCAGGGCATATAAGAAACGAC
AGTTTCAACATCCAGTGCGATGTTACCGTCATGAAGTCTACCCGCAAAGGTAGTCGGTTTAGCTTGGTTCCTCCAAGCAA
CTTGCGTCAACAACTTGGTGACCTAGTGAAGAGCATGGATGGAGCCGACGTGACCTTTCATGTCGGCGGGGAGAGTTTCT
TGGCTCATAGGGCCGTGCTCG----CCGCTCGGCCATCCGTGTTCAGGGCGGAGCTCTTTGGCGGCATGAAGGAGAATGC
CGGCGGTCCAATTGAAATTTGTGATATGGAAAGTGACGTGTTCAAGGCCTTGCGCCACTTCATATACACAGACTGACTAT
GTGCCTGTTCCCGAGATGACTGATGGATGTGGAGCACGAAGAGAAGCGGTGATGGCTGGCCATCTGCTTGTTGCAGCGGA
CAGGTACAACATTGAGAGGCTGAAGCTGATATGCGAAGAGAAGTTGTGCGAGCTCATCAACTCTGACATCGTGGCGCCAA
GTTTGGCTCTAGCTGAGCAGCACAGTTTCGATACAATTAAGAAAGCTTGCTTTAAGTTCCTCGCTTCCCCTTCTAATTTG
AAGGCGATGATGGCAAGCGATGGTTACGAGCATCTGAAGAATAGCTGCCCATATGTTCTCAAGGAGCTGGCTGCTAGCTT
CCTGCCTGACGAGCTGAAAGCGGCCAAAGATATTATCATGACAATTTAGTAGTGTGGCTAATCATCACCGCATCTAATCG
GTTGCATGTAGAAGGCTCAAGGCAAA---------------------ACTATCTAGATCCAATTTAGCAATCAGAATGCG
AATTGATTGGTGATTCCTGTGTCTTGTATTTGCTGGCATGCATGACTAGTGTCGAAACTGAATTTCTTGTGCTTGCTGCA
GTTTTTGTTATGGTTTGTCAGGGC--------------------------------------------------------
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----------------------TTCAAGTTTCTTCAGTTTGTGCTCCATATGTACTCCTGTTTTTCCCTTT----GATAA
TGTGGCATTGCCAAGT-TTTTTTATAGACTGAAATATTCATCTACCTTGCT-----TAAGAAAGATACTTTCTCACTGAT
GATTCCAAGAATTT--TTT-----ACATGATTACCTTGAA-TACGGGAAAAAAAACTTTGAATATTTCTTTCCCTATCAA
TCCCGAGGCTTCAGTATGTTTGCCAATACAGGAACATGCATACT---------TGCAGCCTGAATTTCTATTTGCCGTGA
TAATATTT------------------------------------------------------------------------
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-------------------------------TCCGCTGATTTAAGCACATTGTCACACAGCTCAGACA------------
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>chr1B_933
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--TATAG-------------------------------------------------------------------------
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-----------------------------------------------------------------ACGCAGGGAATCTCT
CATTGTCGCCGTTCTTCCATCGGAGTGC-AATCCAAGAGACGACAAGAATGTCAGAGCTTCCCGATCTTCCCGCTGACCT
TGCAGCGGGGTCTGATAAAAGGTCATATGTGATCAAGGTAGACGACTACTCAAGAATCAAGTTGATGATCGGGCCTGGCA
ACTGCGTGAAATCTGCCCCTTTCAGTGTTGGAGGCTACG------ACTGGGTTTTGCGGTTCTACCCAAACGGCTGCGAC
ATCACACAGTATGAAGCCGGTTGCGTATCTGTTCTTCTGGCTCTTGATTCTGGTTTTGCCACGGACGTGAGGGCGAAATT
TAAAATTACTTTGCTT------GACAAGGATGGGGTACCAGCGCATACAAGAAGCAAGATCACTCGCGAACGCATCTTCT
CTAGCAAAGGCTCATGCAAGGGTTTCAGTGATTTTGTCGGCAGAGCTTATCTTGAGAATCCAAGTAGACTAAGCAACGAC
AGTGTCAGCATCATGTGCCATGTTACTGTCGTGAAGAATATCCACAGAGGTGATCGGCTTATCTTGGTTCCTTCAAGAAA
CTTGCATCAACATCTTGGAGACCTACTGAAGAGCATGGATGGAGCCGACGTGACCTTTCATGTCGGCGGGGAGAGTTTCT
CGGCTCATAGGGTCGTGCTCGATCGCCGCTCGGTCATCCGTATTCAGAGCGGAGCTCTTTGGCGGCACGAAGGAGAAAGC
CGGCGGTCCGATAGAAATTAGTGACATGGAAAGTGACGTGTTCAAGGCCTTGCTCCACTTCATATACACAGACGAG-TAT
GAGCCTGTTGCTGAGATGACCGATGGATGTGAAGCACGGAGAGAAGCGGTGATGGCTGGCCATCTACTTGTTGCAGCAGA
CAGGTACAATATCGAGGGGCTGAAGGTGATATGCGAAGAGAGGATGTGCAACCTCATCAACCCTGACATTGTGGCGACTA
GTTTGGCTCTAGCAGAGCAGCACGGCTTCCGTAGCATCAAGGATGCCTGCTTTGATTTCCTCGCTTCTCCTTCCAATTTG
GAGGCGATGATGGCAAGTGATGGTTACGAGCATCTCAAGAATAGCTGCCCATCAGTTCTCAAGGAGCTGGCTGCTAGCTT
CCTGCCTGCCGAACTGAAAGCGGCCAAAGATATTATCATGACAATTTAGTATTGTGGCTAATCATCGTTGCATCTAATCT
AATTTAGTATCTATCGTCTTACCTATTTCTCTATGTTGATTGCATGTACTATGTAGATCCAATTTTGCAATGAGAATGCG
AATTGGTTGGTGATTCCTGTGTCTTTTATCTGCTGGCATGCATGACTGGTGTCG-AACTGAA---------CTTGCTGCA
GTTTTCCTTATGGTTTGTATCTTTCGAAGGGCCTTTCCTTAGGCGCATGCTAGAAATCATCCGGCTGATCTGCGCGTGGG
ATCAGCCGGGTCGGCAGCCACTCGATCGTCCTGGCAGCCCGTATTATAAGCCGTTCGATCCACGTCTCAAGCCTGTTCGA
TTCATTTCTTTTCGAGAGTGCGGGTCGCGAGTACTGCTTTCACAAACAGCCACGCACACATGCATGACAGGCGAAGTGCT
TCTTGTTCAGCTAAGCAGCAAAGTCATCTAGTATTTGTTACGTAGCAAGTCACCCATTTTTTAATAGAAAAATAGCAAGT
CATCCATGCTCGTGCACCACCACGAGCTAATTCAAATACAATCGGCAGAGTTTTTTTTTTAGAGTACGCCAAAGGCTTGA
AAGCCTACAAGAAAATGTTGTAGGTGGATTTATATAGAAGGGGAGAAAATGTTGTACAAGACTTCGCGATGAGACTAGAA
AGCCTACACGGAAACTCCGACTCAAAAAAAAAAGTCTACTCTCTCACGAAAGGATCTAAACCCTCAACTCCTAGACCCGC
TTTCTTCCAAAGCTTGATCTCCTCATGGATGAGCTGAACAAGGTTAGTGTCCGAGCGCACTTGGTCATTGCAGTTGAACA
CCCGAGCGTTCCTCTGCTTCCATAGGTGCCACGCGGTCAAGATGACGAGCGAATCAAACCCTCTCTTGAGCTTTCCATGG
AAGGACTTCCGCGCTTGTCCCACCACACCATGAATGTATCCTCGAGGCTTGGGATTTGGATGTTGATTTGAAGCAACTGG
AAGCAACCACTCCAAACTTGCCTCGCGTAAACGCATCTAGCGAGGATATGGTCTGTTGTGTCCTCCTCTCAGCAAGTGTA
GCATGCCGAAGTCGTATCTTGGAGACCATGCCTCGCACGTCGGTCCGAATTCCATAGCCGGTATCGAGAGGCAAGCCACG
CAAAAATTTTGCACTTGAGAGGCGCCCAACTGCTCCAAATGCATTGAGCGGTGGCGAACCGAGTCATGCCCTGGCATAGC
ATACTGTAGGTGGATTTTGCGCTATATGAACCCGTGACACTCCAGGGCCAGTAGAAGACATCATCCTCCGATACATTCCT
TTGGATCGTCGCCAAGGCATGTTGCAAGTGTATGAGTTGCAGGTGAGCCGTGAAGGATAGCTCACCCGTGATGTCATTGA
CCCAAGAGCCCTCGAAACAATCGGCAGAGTGGCTGCTGCATATGCTGCATACGAGGGTAGACGCGCTGGAAGACGAGACG
ACAGTGTCGCAAAGGGTTGTTCGACTGTTGCGGGCCTAGAGTAAGGGCGCTAGCAGTGCTGCGACGCTGGACGACCATCT
CTGCAATGGCAGCCTGGGGTGATGCTACGAGGAGGGCTTCGACGAAAACCTAGCACATGCTTCGATAGCCGTGGTGATGG
CGCGATGACGTGCTTCGGCGGTCGCGGCGATTCTGCGACGGTAGCCTGTCTGCTTCGACGATGTTGCGACAACATGCTTT
GACACTTGCAGCGATACTATGACGACAAATTGTCTGCTTCAATGATGTTGTGACGGCATGCTTCGGCCACACAATGGTGG
GTGCTTCAACAACCGCGGTGATGCTACGACGGCAACCCGGGATACTTCGGTGATGTTGCATCGGCGTGCTTTGACGGCCG
CGATGGGTGCTTCGACAGTCACAACGATGCTACGATGGCGAGCCAGCTGCTTCCATGATGTTACGACAACATGCTTCCAA
CACCCACGACTATGTCGTGACGAACCGTGACGGCGACGTTCTTTCAATGACCATGGCGATGCTGCGACGAAGCCCTGATT
GCTTCGACGGCATGCTTCCCGGCCGTTGCAGTGCTGCCACAATGGCACGATTGTTTCAATGATGCTACGACAACAACTCG
GCTAATCCGATGATGTTGCGGTAGTATATATGTTTCGACAGCCACGACGCTTGCAGAGGTGTCAAGGACCCTACTCTAAG
CATTGCTATATCTAAGCAAATCATGACTCCATTGTGCTTGCGAGTACCATAATCCAACAAAGACCCACAATCAACGTAAA
TAATATGATGTTCTAAAATCCTGGTTTAGTTCTTGCTGTGTGCTTTCTCTTGGGATGTCACGGTTACTGTAGCTTACGTG
ACATCCCTTTTGGATGTTAGAGGATCCGCTTCCCACGTACATATGTAGGGACGTGCTAAGCACAAGGTGAGAAGTGCAAG
TAAAAAGAATCTGTTAATTAACAATCATAGCTTCAGGGGTCACTATGGACGTCACATGAAGAACACAGGCGCCGCACCAC
ACGATGGCGTGCGATCGCACGGTGCCGGACGCGGCTGACCAAGCCACAAAATCATCCGGCTGTTTTTGAACATTTTCCCT
TTCCTTATGGTTTGTAAGGACTTCCAATTTTCTTCAGTTT-----------------CTCTTTTTCCCATT----GTTAA
TGTGGAATTGGCAAGTCTTTTTTATAGACTGAAATATTCATCTACCTTGCT-----TAATAAAGATATTTTCTCAG---T
GATTCCAAGGATATTGTTTTTTTGACATTATTACTTTGCA-TACGCG--AGAAAACCTTGAATATTTATTTCCCAATCAA
TCCCGAGGCTTTAGTATGTTTGTCAATACAGGAACATGCATACTTCTTTCACCTGCAGCCTGAATTTCTATTTGCCGTGA
TCACTCGTCGCTGACTTTACAGCGTCCAAACTCATGTAATCGTCGGTAACCAAAAGCATGCAAGAGTCACAACAGAT-AA
CCGTAGCTGATCTCATGTTCGTTGTGTCTTCTGC----------------------------------------------
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>chr1A_1051
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------------------AAGTTCATATGTGATCAAGATAGACGGATACTCAAGACTCAAGGGGCAAATCGAGCATGGAA
ACTACGTGCAATCTACCCCTTTCACTGTTGGAGGTCACG------ATTGGGCCGTGGAGTATTACCCAAACGGTTGCTAC
GCCGAAAAGTATGAAGCCGGTTTCATATCTGTTTTTCTAGCTCTGTATTCTGATGTTTCTAACGATGTGAAAGCGAAAGT
TGGATTTAGTCTGCTT------GACAAAGATGGAGAACCACTGGAATCAAAAAGCATGATCACCCATGAGCATATCTTCG
ATAGCAAAGGTTCAGACTGGGGTTTCTCTAATTTTATCAAGGTTGCTGATCTCGAGAGCTCAGTGTATCTAAGAGACGAC
AGTTTCAGCATCAGGTGTGATGTTACGGTTATGAAGCCTGTCCATAAAGTTAATCGGTTTATTGTGGTTCCTCCAAGTAA
CTTGCACCAGCATCTCGGTGACCTCCTCATCAGCTTGGATGGAGCGGATGTGACCTTTCGGGTTGGCGGGGAAAGCTTCT
TGGCCCATAGGTCCGTGCTTG----CTGCTCGGTCATTAGTATTCAGGGCGGAGCTCTTTGGCCCCATGAAGGAGAGTGG
GAACAGTTTGATTGAAATTAGCGATATGGAAAGTGACGTGTTCAAGTCTTTGCTCCACTTCATTTACACTGACTCGC---
-TGCCTGTTCCTGAGACAACTGATGAGGGTGAAACAGGAAGAGAGATGGTGATAGCTGGTCATCTACTTGTTGCGGCAGA
CAGGTACAACATTGAGAGGCTCAAGCTGATATGCGAAGAGAAGTTGTGCAACCTCATTGACTCTGACGTCGTGGCGACTA
GTTTGGCTCTAGCTGAGCAGCACGGCTTGCATAGAATCAAGGAGGCCTGTTTTGAGTTCCTCGCTTCGCCTTCCAATTTG
GAGACGATGATGGCAAGTGATGGTTACGAGCATCTGAAGAATAGCTGCCCATCTGTTCTCAGGGAGCTGGCTGCTAGCTT
CCTGCCGGCCGAGCTGAAAGCGGTCAAAGATATTATCATGACAACTTAGTAGTGTAGCTAATGATCACTGCATCTTATCA
TATTTAGTATCTATGTTGTTACCTATT-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-
>chr1B_1051
--------------------------------------------------------------------------------
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------------------AAGTTCATATGTGATCAAGATAGACGAATACTCCAGAATCAAGGGGCAAAGCGAGCGTGGAA
AATATGTGAAATCGACCCCTTTCAGTGTTGGAGGTCACG------ATTGGGTTGTGTGGTATTTCCCAAACGGTTGCCAC
ACCAAAAAGTACGAAGCCGGTTTCATATATGTTTTTCTAGCTCTTGATTCTGCTGCGTCGAAGAATGTGAGGGCCAATGT
TGGATTTAGTTTGTTTCCTATTGGCAATGAGGTAGAACCAGTGGGTTCATATAACAAGACCG---CCGAACATATCTTCC
CTAGCAAAGGTTCAGATTGGGGTTTCTCTAACTTTATCAAGAAGGCAAATCT-GAGGGATCAATGTATCTAAGGAAAGAC
AGTCTCAGAATCATGTGCGATGTTACTGTCGTGAAGTATGGCCACAAGGCTAATCGGCTTAGCTTGGTTCCTCCAAGCAA
CTTGCATCAACATCTCGGTGAGCTCCTAAAGAGTAGGGATGGAGCGGATGTGACCTTTCATGTTGGCGGGGAGAGTTTCT
TGGCTCATAGGGCCGTGCTCG----CCGCTCGATCATCTGTCTTCAAAGCGGAGCTCTTCGGTGCTATGAAGGAGGACGC
CGATCGCCCAACTGAAATCAGTGATATGGAACCTGATGTATTCAGGTCGTTGCTTCACTTCATATACACAGACTCAC---
-CACCCATTCGTCTGATGACCAATGGTGGTAAAGCACGAAGAGATGCGGTCATGGCTGGCCATCTACTTGTTGTAGCTGA
CAGGTATTACATTGAGAGGCTGAAGGTGTTTTGTGAAGAGAAGTTATGCAAGCTCCTCGACTCTGACATTGTGGCAACTA
GTCTGGCTCTAGCTGAGCAGCACAAGTCCCGCAGACTCAAGGAAGCTTGCTTTCAGTTCCTCGCTTCTCTTTCCAATTTG
AAGGCGATGATGGCAAGTGATGGTTACGAGCATCTGAAGAATAGTTGCCCATCTGTTCTCAAAGAGCTGGCTGTTAGCTT
CCTACCTGCTGAGCTGAAAGCAGTCAAAGATCATT---------------------------------------------
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>chr1D_1385
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--------------------------------------------GCTGATCTCGAGAGATCAGTGCATCTAAGAGACGAC
AGTTTCAGCATCAGGTGTGATGTTACGGTTATGAAGCCTGTACGTAAAGTTAATCGGTTTATTGCGGTTCCTCCAAGTAA
CTTGCACCAGCATCTCGGTGACCTCCTCATCAGCATTGATGGAGCTGATGTGACCTTTCGGGTTGGCGGGGAAAGCTTCT
TGGCCCATAGGTCCGTGCTCG----CTGCTTGGTCATCAGTATTCAGAGCGGAGCTCTTTGGCCCCATGAAGGAGAGTGG
GAACAGTCTGATTGAAATTAGCGATATGGAAAGTCACGTGTTCAAGTCTTTGCTCCACTTCATTTACACGGACTCAC---
-TGCCTGTTCCTGAGACAACTGATGTGGGTGAAACAGGAAGAGACGTGGCGATGGCTGGTCATCTACTTGTTGCGGCAGA
CAGGTACAATATTGAGAGGCTCAAGCTGATATGCGAAGAGAAGTTGTGCAACCTCATTGACTCTGACGTCGTGGCGACTA
GTTTGGCTCTAGCTGAGCAGCACGGCTTGCATAGAATCAAGGAGGCCTGTTTTGAGTTCCTCGCTTCGCCTTCCAATTTG
GAGGCG-TGATGGCAAGTGATGGTTACGAGCATGTGAAGAATAGCTGCCCATCTGTTCTCAGGGAGCTGGCTGCTAGCTT
CCTGCCGGCCGAGCTGAAAGCGGTCAAAGATATTATCAT-----------------------------------------
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-
>SNPs
SSSS-SSSSS-SSSSS-SS-SSS-SS--SSSSSS---SSS-SSSS-SSS--SSSSSS---SSS-S-SSS-SSS-SS-SS-
-S-SSSSSS-S-SSSSS-SSSSSSS--SSSS--SSSS--SSSSSSSSS-SSSSSSSSSS-SSSS-S-SSSSS-SSSSS--
SS-SSS-SSS-S--S--SSS-S-SSS-SS-SSSS-S--SSSSSSSSSS-SS-SS-SSSS--S-S-S-SS-SSSSSS-SS-
S-SSS-SSSS-SSSS-SS-S-SSSSSSSSSSS---SSSS-SSSSSSS-SSS-SSSS-SSSSSSSSSS-SS-SSS--SS--
S-SSSSS-S---SSSSS--S-SSS---SSSSSSSSSSSSSS--SSSSSSSSS-SSSS-S---------------------
---------------------S----------------------------------------------------------
--------------------------------------S-----------S-----------------------------
--------------------------------------------------------------S--SSS------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------S--------------
----------------------------------------------------S---------------------------
--------------S-----------------------------------------------------------------
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--------------------------------------------------------------S-----------------
-------------------------------------------------------S------------------------
--------------------------------------------------------------------------------
-----------------------S--------------------------------------------------------
----------------------------------------------------------------------S---------
---------------S----------S-----------------------------------------------------
----------------------------------------------------------S-S-----S-------------
------S-------------------------------------------------------------------------
--------------------------------------------------------------------------------
S--------------------------------------------S----------------------------------
--------------------------------------------------------------------------------
-------------------------------------------S------------------------------------
--------------------------------S-----------------------------------------------
--------------------------------------------------------------------------------
------S-----------------------------------------------------S-------------------
--------------------------------------------------------------------------------
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------S-------------------------------------------------------------------------
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------------------------S--------S------------------------------------SSSSS-----
---------------S-------------------S------SS-SSSSS-SSSSS---S--------S----S------
------------------------S---------------S---------------------------------------
---------------S---------------------------------------------------------S------
--------------------S--------------------------------------------------------S--
--S--S-----------------S--SS------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------SSSSSSSSSSSS
S
>forward_38
------------------CAGGGCATCACAGATCAGCT------------------------------------------
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>reverse_2703
--------------------------------------------------------------------------------
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--------------------------------------------------------------TGATCTTCCCGCTGACCT
TG------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-
>forward_375
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------CCCCCGAATTTCTGGAGACG-------------------------
--------------------------------------------------------------------------------
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-
>reverse_3564
--------------------------------------------------------------------------------
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-------------------------------------------GTGTGCAACCTCATCAACCC-----------------
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-
>forward_376
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------CCCCGAATTTCTGGAGACGG------------------------
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-
>reverse_3633
--------------------------------------------------------------------------------
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--------------------------------GGAATCAAGGATGCCTGCTT----------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-
>forward_3361
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------GCGGCATGAAGGAGAAAGC
T-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-
>reverse_7116
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------------------GGTGC
GTAGAAAACCAGCAC-----------------------------------------------------------------
-
