Multiple sequence alignment - TraesCS1A01G068000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G068000 chr1A 100.000 1775 0 0 1 1775 49368134 49366360 0.000000e+00 3278.0
1 TraesCS1A01G068000 chr1A 100.000 1320 0 0 1875 3194 49366260 49364941 0.000000e+00 2438.0
2 TraesCS1A01G068000 chr1A 88.590 780 75 11 999 1775 562034825 562034057 0.000000e+00 935.0
3 TraesCS1A01G068000 chr1A 87.868 272 14 7 2210 2476 562032341 562032084 5.620000e-78 302.0
4 TraesCS1A01G068000 chr1A 79.343 213 28 8 2538 2735 562032065 562031854 6.030000e-28 135.0
5 TraesCS1A01G068000 chr1A 100.000 52 0 0 3414 3465 49364721 49364670 2.850000e-16 97.1
6 TraesCS1A01G068000 chr1D 90.363 1349 73 24 1878 3194 50197249 50195926 0.000000e+00 1718.0
7 TraesCS1A01G068000 chr1D 94.123 1021 50 6 756 1775 50198274 50197263 0.000000e+00 1544.0
8 TraesCS1A01G068000 chr1D 86.393 779 66 19 999 1775 469041406 469040666 0.000000e+00 815.0
9 TraesCS1A01G068000 chr1D 84.270 623 79 11 1 607 50199963 50199344 1.070000e-164 590.0
10 TraesCS1A01G068000 chr1D 87.687 268 22 10 2210 2476 469035674 469035417 5.620000e-78 302.0
11 TraesCS1A01G068000 chr1B 91.845 981 62 10 805 1773 70712681 70711707 0.000000e+00 1352.0
12 TraesCS1A01G068000 chr1B 81.685 1365 168 49 1878 3194 70711728 70710398 0.000000e+00 1061.0
13 TraesCS1A01G068000 chr1B 88.432 778 70 14 999 1775 648588060 648587302 0.000000e+00 920.0
14 TraesCS1A01G068000 chr1B 87.407 270 15 5 2210 2474 648585661 648585406 3.380000e-75 292.0
15 TraesCS1A01G068000 chr1B 86.957 115 13 2 2621 2735 648585287 648585175 1.010000e-25 128.0
16 TraesCS1A01G068000 chr7B 86.757 370 31 7 2121 2476 34154573 34154208 2.510000e-106 396.0
17 TraesCS1A01G068000 chr3B 86.486 370 32 10 2121 2476 89686526 89686161 1.170000e-104 390.0
18 TraesCS1A01G068000 chr3B 78.704 108 21 2 295 400 550805991 550806098 1.730000e-08 71.3
19 TraesCS1A01G068000 chr7D 79.739 153 19 6 236 377 539708561 539708712 2.200000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G068000 chr1A 49364670 49368134 3464 True 1937.700000 3278 100.000000 1 3465 3 chr1A.!!$R1 3464
1 TraesCS1A01G068000 chr1A 562031854 562034825 2971 True 457.333333 935 85.267000 999 2735 3 chr1A.!!$R2 1736
2 TraesCS1A01G068000 chr1D 50195926 50199963 4037 True 1284.000000 1718 89.585333 1 3194 3 chr1D.!!$R3 3193
3 TraesCS1A01G068000 chr1D 469040666 469041406 740 True 815.000000 815 86.393000 999 1775 1 chr1D.!!$R2 776
4 TraesCS1A01G068000 chr1B 70710398 70712681 2283 True 1206.500000 1352 86.765000 805 3194 2 chr1B.!!$R1 2389
5 TraesCS1A01G068000 chr1B 648585175 648588060 2885 True 446.666667 920 87.598667 999 2735 3 chr1B.!!$R2 1736

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
580 593 0.107165 CCCGATTTCTCCAACCCTCC 60.107 60.0 0.0 0.0 0.0 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2544 5210 0.758123 AAGGGTTGTGGCATTGTTGG 59.242 50.0 0.0 0.0 0.0 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 5.173664 TGAGATGCACAGATACACTTTCTG 58.826 41.667 0.00 0.00 44.95 3.02
67 68 6.233434 AGATGCACAGATACACTTTCTGAAA 58.767 36.000 7.63 2.44 42.63 2.69
70 71 5.149977 GCACAGATACACTTTCTGAAAAGC 58.850 41.667 7.63 3.08 44.82 3.51
78 79 5.095490 ACACTTTCTGAAAAGCGAAAAGTG 58.905 37.500 19.28 19.28 44.82 3.16
80 81 2.383298 TCTGAAAAGCGAAAAGTGCG 57.617 45.000 0.00 0.00 37.44 5.34
85 86 2.103410 AAGCGAAAAGTGCGGTTGT 58.897 47.368 0.00 0.00 46.12 3.32
86 87 0.248458 AAGCGAAAAGTGCGGTTGTG 60.248 50.000 0.00 0.00 46.12 3.33
96 97 1.923864 GTGCGGTTGTGTTTCCAAAAG 59.076 47.619 0.00 0.00 0.00 2.27
114 116 6.534793 TCCAAAAGATTGAAAAAGCACAACTC 59.465 34.615 0.00 0.00 38.94 3.01
130 132 4.576463 CACAACTCTGCTTCTAGGTTTTGT 59.424 41.667 0.00 0.00 0.00 2.83
202 204 9.425577 TGTTTTTATTTCGGTTTCTGACTTTTT 57.574 25.926 0.00 0.00 0.00 1.94
250 262 8.575649 AAAACTTCATCGAAACCTATTACCAT 57.424 30.769 0.00 0.00 0.00 3.55
260 272 6.210784 CGAAACCTATTACCATGGGATCTAGA 59.789 42.308 18.09 0.00 34.53 2.43
263 275 8.525729 AACCTATTACCATGGGATCTAGATTT 57.474 34.615 18.09 6.02 34.53 2.17
278 290 4.976731 TCTAGATTTAAAGTCTCGATGCGC 59.023 41.667 0.00 0.00 0.00 6.09
289 301 2.177339 CGATGCGCGAAATTCAACG 58.823 52.632 12.10 4.39 44.57 4.10
294 306 1.577616 CGCGAAATTCAACGGCTCG 60.578 57.895 0.00 0.00 0.00 5.03
308 320 0.517316 GGCTCGTGATTTGGACACAC 59.483 55.000 0.00 0.00 38.04 3.82
309 321 1.225855 GCTCGTGATTTGGACACACA 58.774 50.000 0.00 0.00 38.04 3.72
310 322 1.195448 GCTCGTGATTTGGACACACAG 59.805 52.381 0.00 0.00 38.04 3.66
323 335 6.114187 TGGACACACAGTTCAAGAGATAAT 57.886 37.500 0.00 0.00 31.00 1.28
324 336 6.533730 TGGACACACAGTTCAAGAGATAATT 58.466 36.000 0.00 0.00 31.00 1.40
374 387 2.411069 GGAAAAGCTTCGAGGTTACGAC 59.589 50.000 0.00 0.00 41.97 4.34
380 393 2.093783 GCTTCGAGGTTACGACAATTGG 59.906 50.000 10.83 0.00 41.97 3.16
387 400 2.250188 GTTACGACAATTGGCATGCAC 58.750 47.619 21.36 9.64 0.00 4.57
389 402 2.153945 CGACAATTGGCATGCACGC 61.154 57.895 21.36 0.00 0.00 5.34
390 403 1.080637 GACAATTGGCATGCACGCA 60.081 52.632 21.36 5.42 0.00 5.24
393 406 0.170784 CAATTGGCATGCACGCAGTA 59.829 50.000 21.36 0.00 41.61 2.74
409 422 2.404215 CAGTACGTCACTTGTTCCCAG 58.596 52.381 0.00 0.00 34.26 4.45
441 454 0.178961 GAGGGACTTTTGCAAGGGGT 60.179 55.000 0.00 0.00 41.55 4.95
442 455 1.074889 GAGGGACTTTTGCAAGGGGTA 59.925 52.381 0.00 0.00 41.55 3.69
443 456 1.716503 AGGGACTTTTGCAAGGGGTAT 59.283 47.619 0.00 0.00 27.25 2.73
445 458 2.100197 GGACTTTTGCAAGGGGTATCC 58.900 52.381 0.00 0.00 33.82 2.59
460 473 5.731678 AGGGGTATCCTTAATCAGTGACTTT 59.268 40.000 0.00 0.00 45.47 2.66
470 483 1.405105 TCAGTGACTTTGGTGCTTTGC 59.595 47.619 0.00 0.00 0.00 3.68
509 522 5.560966 ATTGTTTAGTTTAGATGTGCCCG 57.439 39.130 0.00 0.00 0.00 6.13
522 535 2.639286 GCCCGTTGCACTGTTCAG 59.361 61.111 0.00 0.00 40.77 3.02
527 540 1.215014 CGTTGCACTGTTCAGCTCGA 61.215 55.000 0.00 0.00 33.47 4.04
531 544 1.270252 TGCACTGTTCAGCTCGATTGA 60.270 47.619 0.00 0.00 0.00 2.57
535 548 2.037772 ACTGTTCAGCTCGATTGACCTT 59.962 45.455 0.00 0.00 0.00 3.50
559 572 7.342769 TCTATTTCGAGTTGTTCTATGGCTA 57.657 36.000 0.00 0.00 0.00 3.93
563 576 2.803492 CGAGTTGTTCTATGGCTAGCCC 60.803 54.545 30.81 14.58 34.56 5.19
565 578 1.138266 GTTGTTCTATGGCTAGCCCGA 59.862 52.381 30.81 20.46 35.87 5.14
579 592 0.748367 GCCCGATTTCTCCAACCCTC 60.748 60.000 0.00 0.00 0.00 4.30
580 593 0.107165 CCCGATTTCTCCAACCCTCC 60.107 60.000 0.00 0.00 0.00 4.30
581 594 0.462047 CCGATTTCTCCAACCCTCCG 60.462 60.000 0.00 0.00 0.00 4.63
582 595 0.535335 CGATTTCTCCAACCCTCCGA 59.465 55.000 0.00 0.00 0.00 4.55
585 598 0.399075 TTTCTCCAACCCTCCGAACC 59.601 55.000 0.00 0.00 0.00 3.62
586 599 0.765135 TTCTCCAACCCTCCGAACCA 60.765 55.000 0.00 0.00 0.00 3.67
594 607 4.207165 CAACCCTCCGAACCAATGATAAT 58.793 43.478 0.00 0.00 0.00 1.28
599 612 4.697352 CCTCCGAACCAATGATAATCCATC 59.303 45.833 0.00 0.00 0.00 3.51
601 614 5.689835 TCCGAACCAATGATAATCCATCAA 58.310 37.500 0.00 0.00 46.66 2.57
602 615 5.764686 TCCGAACCAATGATAATCCATCAAG 59.235 40.000 0.00 0.00 46.66 3.02
604 617 6.293626 CCGAACCAATGATAATCCATCAAGAC 60.294 42.308 0.00 0.00 46.66 3.01
605 618 6.484643 CGAACCAATGATAATCCATCAAGACT 59.515 38.462 0.00 0.00 46.66 3.24
606 619 7.519488 CGAACCAATGATAATCCATCAAGACTG 60.519 40.741 0.00 0.00 46.66 3.51
609 622 6.769341 CCAATGATAATCCATCAAGACTGTGA 59.231 38.462 0.00 0.00 46.66 3.58
610 623 7.041303 CCAATGATAATCCATCAAGACTGTGAG 60.041 40.741 0.00 0.00 46.66 3.51
611 624 5.922053 TGATAATCCATCAAGACTGTGAGG 58.078 41.667 0.00 0.00 40.80 3.86
615 628 0.325933 CATCAAGACTGTGAGGGGCA 59.674 55.000 0.00 0.00 0.00 5.36
638 703 5.941788 ACCTTGAGTGAATAGGTTGTCTTT 58.058 37.500 0.00 0.00 39.19 2.52
642 707 8.846211 CCTTGAGTGAATAGGTTGTCTTTAAAA 58.154 33.333 0.00 0.00 0.00 1.52
651 716 5.842907 AGGTTGTCTTTAAAAGATTGGCAC 58.157 37.500 0.00 0.00 40.18 5.01
654 719 5.957842 TGTCTTTAAAAGATTGGCACGAT 57.042 34.783 0.00 0.00 40.18 3.73
658 723 5.937540 TCTTTAAAAGATTGGCACGATGAGA 59.062 36.000 0.00 0.00 31.20 3.27
702 768 4.632688 TCTTACCTTTTTAAATCTCCGGCG 59.367 41.667 0.00 0.00 0.00 6.46
716 782 2.588034 GGCGGGTGGCTTACGATC 60.588 66.667 0.00 0.00 42.94 3.69
719 785 1.588139 CGGGTGGCTTACGATCGAC 60.588 63.158 24.34 8.04 0.00 4.20
734 800 0.742505 TCGACAGAAATACGGCCGAT 59.257 50.000 35.90 18.27 0.00 4.18
745 811 5.371115 AATACGGCCGATATGATTTTTGG 57.629 39.130 35.90 0.00 0.00 3.28
749 815 2.223711 GGCCGATATGATTTTTGGCGTT 60.224 45.455 0.00 0.00 43.36 4.84
776 1713 1.634702 TTTTGCTGGTCGTTTTGTGC 58.365 45.000 0.00 0.00 0.00 4.57
791 1728 0.950836 TGTGCCATGTTGTCTTTCCG 59.049 50.000 0.00 0.00 0.00 4.30
796 1733 2.034053 GCCATGTTGTCTTTCCGTTGAA 59.966 45.455 0.00 0.00 0.00 2.69
823 1760 1.340568 GTAGACCCCCTCTGATTACGC 59.659 57.143 0.00 0.00 0.00 4.42
843 1780 8.611654 TTACGCCTTTTACTTTTAGACAATCT 57.388 30.769 0.00 0.00 0.00 2.40
884 1821 3.175133 AAGGGCGCCTTCAACTATG 57.825 52.632 28.56 0.00 40.17 2.23
915 1852 2.202730 GCTCTCTCAGCGCTGGAC 60.203 66.667 35.36 16.14 38.76 4.02
947 1884 4.722535 AGCTCGCCTTCCCCCTCA 62.723 66.667 0.00 0.00 0.00 3.86
949 1886 4.168291 CTCGCCTTCCCCCTCAGC 62.168 72.222 0.00 0.00 0.00 4.26
1304 2241 1.065928 GTACGGGTGATCTCTGCCG 59.934 63.158 9.90 9.90 0.00 5.69
1314 2251 3.479269 CTCTGCCGTTCCGCGTTC 61.479 66.667 4.92 0.00 39.32 3.95
1361 2298 4.159377 TCTGCACAATTCGTTTTGGATC 57.841 40.909 5.37 0.00 0.00 3.36
1452 2389 4.022849 GCTTGCAGTTTCAGTCTGGTTAAT 60.023 41.667 0.00 0.00 33.98 1.40
1501 2438 1.215647 GTCCGCACTACTGGGTGAG 59.784 63.158 7.11 4.14 39.34 3.51
1607 2544 1.667724 CGCAAGGACTTCATCATGGTC 59.332 52.381 0.00 0.00 0.00 4.02
1654 2600 5.911752 TGCTTGTTTTAATTGTGTGATGGT 58.088 33.333 0.00 0.00 0.00 3.55
1691 2638 9.155975 GTTATCAAAATCTGTATGTGTCTCTGT 57.844 33.333 0.00 0.00 0.00 3.41
1729 2676 4.753233 AGACTGATGAAATCCTGAGAACG 58.247 43.478 0.00 0.00 44.73 3.95
1771 2718 6.157645 ACTGATGAAATCCTGAGAACATAGGT 59.842 38.462 0.00 0.00 44.73 3.08
2134 4708 8.642432 TCAATACTTACTATCATGCAGCTTACT 58.358 33.333 0.00 0.00 0.00 2.24
2138 4712 6.477033 ACTTACTATCATGCAGCTTACTTTCG 59.523 38.462 0.00 0.00 0.00 3.46
2244 4844 9.436957 CTGTCCATATGTCTAATAATTACCCAC 57.563 37.037 1.24 0.00 0.00 4.61
2521 5135 1.373497 CTGCTGCTCCGTTTCGTCT 60.373 57.895 0.00 0.00 0.00 4.18
2524 5138 0.667792 GCTGCTCCGTTTCGTCTCTT 60.668 55.000 0.00 0.00 0.00 2.85
2566 5232 1.620822 ACAATGCCACAACCCTTCTC 58.379 50.000 0.00 0.00 0.00 2.87
2592 5262 0.475828 ACTTTGGCTGTACCCCTCCT 60.476 55.000 0.00 0.00 37.83 3.69
2775 5456 5.769662 TGTCACATTTATGGCAGAGAAGTTT 59.230 36.000 0.00 0.00 28.84 2.66
2800 5481 4.084287 ACGGAGTCAGTATTGGAACTACA 58.916 43.478 0.00 0.00 29.74 2.74
2857 5538 1.229145 CCCTTTGCATTCCACCCCA 60.229 57.895 0.00 0.00 0.00 4.96
2872 5553 2.238144 CACCCCATCAGTTCTGATGTCT 59.762 50.000 29.06 15.43 42.93 3.41
2877 5558 4.190001 CCATCAGTTCTGATGTCTTGGAG 58.810 47.826 29.06 15.61 42.93 3.86
2894 5575 4.098914 TGGAGGAGCAGTTTATGTTGTT 57.901 40.909 0.00 0.00 0.00 2.83
2895 5576 5.235850 TGGAGGAGCAGTTTATGTTGTTA 57.764 39.130 0.00 0.00 0.00 2.41
2896 5577 5.815581 TGGAGGAGCAGTTTATGTTGTTAT 58.184 37.500 0.00 0.00 0.00 1.89
2911 5592 6.252967 TGTTGTTATGTTGCAGAATAGTGG 57.747 37.500 0.00 0.00 0.00 4.00
2917 5598 9.237187 TGTTATGTTGCAGAATAGTGGATAAAA 57.763 29.630 0.00 0.00 0.00 1.52
2918 5599 9.722056 GTTATGTTGCAGAATAGTGGATAAAAG 57.278 33.333 0.00 0.00 0.00 2.27
2919 5600 7.944729 ATGTTGCAGAATAGTGGATAAAAGT 57.055 32.000 0.00 0.00 0.00 2.66
2920 5601 7.377766 TGTTGCAGAATAGTGGATAAAAGTC 57.622 36.000 0.00 0.00 0.00 3.01
2921 5602 6.939730 TGTTGCAGAATAGTGGATAAAAGTCA 59.060 34.615 0.00 0.00 0.00 3.41
2922 5603 6.985188 TGCAGAATAGTGGATAAAAGTCAC 57.015 37.500 0.00 0.00 0.00 3.67
2923 5604 6.472016 TGCAGAATAGTGGATAAAAGTCACA 58.528 36.000 0.00 0.00 34.17 3.58
2949 5630 7.996066 AGTCACAGTTCTAGAGAAGCATCTATA 59.004 37.037 0.00 0.00 35.54 1.31
2975 5656 6.899393 TTAGATGCAGGTTGTTCTTTCATT 57.101 33.333 0.00 0.00 0.00 2.57
2984 5665 4.202151 GGTTGTTCTTTCATTGCTTCCAGT 60.202 41.667 0.00 0.00 0.00 4.00
2987 5668 4.276678 TGTTCTTTCATTGCTTCCAGTCTG 59.723 41.667 0.00 0.00 0.00 3.51
2992 5673 1.134367 CATTGCTTCCAGTCTGCCATG 59.866 52.381 0.00 0.00 0.00 3.66
2993 5674 0.401356 TTGCTTCCAGTCTGCCATGA 59.599 50.000 0.00 0.00 0.00 3.07
2994 5675 0.622136 TGCTTCCAGTCTGCCATGAT 59.378 50.000 0.00 0.00 0.00 2.45
2995 5676 1.307097 GCTTCCAGTCTGCCATGATC 58.693 55.000 0.00 0.00 0.00 2.92
2997 5678 2.683152 GCTTCCAGTCTGCCATGATCTT 60.683 50.000 0.00 0.00 0.00 2.40
2998 5679 3.618351 CTTCCAGTCTGCCATGATCTTT 58.382 45.455 0.00 0.00 0.00 2.52
3000 5681 4.842531 TCCAGTCTGCCATGATCTTTTA 57.157 40.909 0.00 0.00 0.00 1.52
3003 5693 4.212847 CCAGTCTGCCATGATCTTTTATCG 59.787 45.833 0.00 0.00 0.00 2.92
3009 5699 4.756642 TGCCATGATCTTTTATCGGACATC 59.243 41.667 0.00 0.00 0.00 3.06
3011 5701 6.166279 GCCATGATCTTTTATCGGACATCTA 58.834 40.000 0.00 0.00 0.00 1.98
3017 5707 6.392625 TCTTTTATCGGACATCTACTCCAG 57.607 41.667 0.00 0.00 0.00 3.86
3025 5715 0.392336 CATCTACTCCAGCCCTGCTC 59.608 60.000 0.00 0.00 36.40 4.26
3030 5720 1.994507 CTCCAGCCCTGCTCTTCCT 60.995 63.158 0.00 0.00 36.40 3.36
3032 5722 2.296365 CCAGCCCTGCTCTTCCTGA 61.296 63.158 0.00 0.00 36.40 3.86
3039 5729 1.918467 CTGCTCTTCCTGATGGCCCA 61.918 60.000 0.00 0.00 0.00 5.36
3041 5731 0.822532 GCTCTTCCTGATGGCCCATG 60.823 60.000 0.00 0.00 0.00 3.66
3042 5732 0.822532 CTCTTCCTGATGGCCCATGC 60.823 60.000 0.00 0.00 0.00 4.06
3054 5744 3.016971 CCATGCCCCCTGTCCTGA 61.017 66.667 0.00 0.00 0.00 3.86
3074 5764 1.280421 AGCACTCTGACCCCATTTCTC 59.720 52.381 0.00 0.00 0.00 2.87
3106 5797 1.606224 GCCTGGCAATTGTGGTTCAAG 60.606 52.381 15.17 0.00 39.55 3.02
3142 5833 1.952296 GGATGCACAATGATCCCTGTC 59.048 52.381 0.00 0.00 33.21 3.51
3143 5834 1.952296 GATGCACAATGATCCCTGTCC 59.048 52.381 0.00 0.00 0.00 4.02
3155 5846 4.157607 CTGTCCGTTGCAGGGTTT 57.842 55.556 5.86 0.00 0.00 3.27
3156 5847 3.315765 CTGTCCGTTGCAGGGTTTA 57.684 52.632 5.86 0.00 0.00 2.01
3163 5854 1.544759 CGTTGCAGGGTTTAACCTCCT 60.545 52.381 14.27 0.41 39.34 3.69
3166 5857 1.351017 TGCAGGGTTTAACCTCCTCTG 59.649 52.381 14.27 12.90 39.34 3.35
3170 5861 1.454201 GGTTTAACCTCCTCTGCTGC 58.546 55.000 6.92 0.00 34.73 5.25
3172 5863 2.079925 GTTTAACCTCCTCTGCTGCAG 58.920 52.381 23.31 23.31 0.00 4.41
3434 6125 4.471904 TTACCTGTTCTGGAGCTACATG 57.528 45.455 0.00 0.00 0.00 3.21
3435 6126 2.540383 ACCTGTTCTGGAGCTACATGA 58.460 47.619 0.00 0.00 0.00 3.07
3436 6127 2.499289 ACCTGTTCTGGAGCTACATGAG 59.501 50.000 0.00 0.00 0.00 2.90
3437 6128 2.499289 CCTGTTCTGGAGCTACATGAGT 59.501 50.000 0.00 0.00 0.00 3.41
3438 6129 3.055530 CCTGTTCTGGAGCTACATGAGTT 60.056 47.826 0.00 0.00 0.00 3.01
3439 6130 3.930336 TGTTCTGGAGCTACATGAGTTG 58.070 45.455 0.00 0.00 0.00 3.16
3440 6131 2.675348 GTTCTGGAGCTACATGAGTTGC 59.325 50.000 0.00 0.00 45.09 4.17
3441 6132 1.901833 TCTGGAGCTACATGAGTTGCA 59.098 47.619 0.00 1.51 46.76 4.08
3442 6133 2.302733 TCTGGAGCTACATGAGTTGCAA 59.697 45.455 0.00 0.00 46.76 4.08
3443 6134 2.676839 CTGGAGCTACATGAGTTGCAAG 59.323 50.000 0.00 0.00 46.76 4.01
3444 6135 2.012673 GGAGCTACATGAGTTGCAAGG 58.987 52.381 0.00 0.00 46.76 3.61
3445 6136 2.616510 GGAGCTACATGAGTTGCAAGGT 60.617 50.000 0.00 0.00 46.76 3.50
3446 6137 2.417933 GAGCTACATGAGTTGCAAGGTG 59.582 50.000 0.00 0.00 46.76 4.00
3447 6138 2.038952 AGCTACATGAGTTGCAAGGTGA 59.961 45.455 0.00 0.00 46.76 4.02
3448 6139 2.417933 GCTACATGAGTTGCAAGGTGAG 59.582 50.000 0.00 0.00 44.32 3.51
3449 6140 2.645838 ACATGAGTTGCAAGGTGAGT 57.354 45.000 0.00 0.00 0.00 3.41
3450 6141 2.498167 ACATGAGTTGCAAGGTGAGTC 58.502 47.619 0.00 0.00 0.00 3.36
3451 6142 1.808945 CATGAGTTGCAAGGTGAGTCC 59.191 52.381 0.00 0.00 0.00 3.85
3452 6143 0.836606 TGAGTTGCAAGGTGAGTCCA 59.163 50.000 0.00 0.00 39.02 4.02
3453 6144 1.421268 TGAGTTGCAAGGTGAGTCCAT 59.579 47.619 0.00 0.00 39.02 3.41
3454 6145 2.158623 TGAGTTGCAAGGTGAGTCCATT 60.159 45.455 0.00 0.00 39.02 3.16
3455 6146 2.887152 GAGTTGCAAGGTGAGTCCATTT 59.113 45.455 0.00 0.00 39.02 2.32
3456 6147 2.887152 AGTTGCAAGGTGAGTCCATTTC 59.113 45.455 0.00 0.00 39.02 2.17
3457 6148 2.622942 GTTGCAAGGTGAGTCCATTTCA 59.377 45.455 0.00 0.00 39.02 2.69
3458 6149 2.942804 TGCAAGGTGAGTCCATTTCAA 58.057 42.857 0.00 0.00 39.02 2.69
3459 6150 2.886523 TGCAAGGTGAGTCCATTTCAAG 59.113 45.455 0.00 0.00 39.02 3.02
3460 6151 2.352127 GCAAGGTGAGTCCATTTCAAGC 60.352 50.000 0.00 0.00 39.02 4.01
3461 6152 3.152341 CAAGGTGAGTCCATTTCAAGCT 58.848 45.455 0.00 0.00 39.02 3.74
3462 6153 2.787994 AGGTGAGTCCATTTCAAGCTG 58.212 47.619 0.00 0.00 39.02 4.24
3463 6154 2.107204 AGGTGAGTCCATTTCAAGCTGT 59.893 45.455 0.00 0.00 39.02 4.40
3464 6155 2.485814 GGTGAGTCCATTTCAAGCTGTC 59.514 50.000 0.00 0.00 35.97 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 4.212143 TGCATCTCATAGAAGCACAAGT 57.788 40.909 2.92 0.00 43.06 3.16
64 65 1.516864 CAACCGCACTTTTCGCTTTTC 59.483 47.619 0.00 0.00 0.00 2.29
67 68 0.248458 CACAACCGCACTTTTCGCTT 60.248 50.000 0.00 0.00 0.00 4.68
70 71 1.843753 GAAACACAACCGCACTTTTCG 59.156 47.619 0.00 0.00 0.00 3.46
78 79 2.570442 TCTTTTGGAAACACAACCGC 57.430 45.000 0.00 0.00 42.67 5.68
80 81 6.976636 TTTCAATCTTTTGGAAACACAACC 57.023 33.333 0.00 0.00 42.67 3.77
85 86 6.652481 TGTGCTTTTTCAATCTTTTGGAAACA 59.348 30.769 0.00 0.00 39.51 2.83
86 87 7.071014 TGTGCTTTTTCAATCTTTTGGAAAC 57.929 32.000 0.00 0.00 39.51 2.78
96 97 4.961433 GCAGAGTTGTGCTTTTTCAATC 57.039 40.909 0.00 0.00 40.54 2.67
247 259 6.870965 CGAGACTTTAAATCTAGATCCCATGG 59.129 42.308 5.51 4.14 0.00 3.66
248 260 7.661968 TCGAGACTTTAAATCTAGATCCCATG 58.338 38.462 5.51 0.03 0.00 3.66
250 262 7.661968 CATCGAGACTTTAAATCTAGATCCCA 58.338 38.462 5.51 0.00 36.68 4.37
260 272 2.536365 TCGCGCATCGAGACTTTAAAT 58.464 42.857 8.75 0.00 43.16 1.40
278 290 0.787787 TCACGAGCCGTTGAATTTCG 59.212 50.000 0.00 0.00 38.32 3.46
289 301 0.517316 GTGTGTCCAAATCACGAGCC 59.483 55.000 0.00 0.00 38.48 4.70
294 306 4.335315 TCTTGAACTGTGTGTCCAAATCAC 59.665 41.667 0.00 0.00 36.48 3.06
355 368 3.102052 TGTCGTAACCTCGAAGCTTTT 57.898 42.857 0.00 0.00 41.47 2.27
374 387 0.170784 TACTGCGTGCATGCCAATTG 59.829 50.000 27.43 14.27 0.00 2.32
389 402 2.404215 CTGGGAACAAGTGACGTACTG 58.596 52.381 0.00 0.00 42.06 2.74
390 403 1.270147 GCTGGGAACAAGTGACGTACT 60.270 52.381 0.00 0.00 42.06 2.73
393 406 0.532862 CTGCTGGGAACAAGTGACGT 60.533 55.000 0.00 0.00 42.06 4.34
395 408 1.070758 TCTCTGCTGGGAACAAGTGAC 59.929 52.381 0.00 0.00 42.06 3.67
396 409 1.423584 TCTCTGCTGGGAACAAGTGA 58.576 50.000 0.00 0.00 42.06 3.41
404 417 2.768527 CCTCTTACATTCTCTGCTGGGA 59.231 50.000 0.00 0.00 0.00 4.37
405 418 2.158842 CCCTCTTACATTCTCTGCTGGG 60.159 54.545 0.00 0.00 0.00 4.45
409 422 4.479786 AAGTCCCTCTTACATTCTCTGC 57.520 45.455 0.00 0.00 34.23 4.26
441 454 5.880332 GCACCAAAGTCACTGATTAAGGATA 59.120 40.000 0.00 0.00 0.00 2.59
442 455 4.702131 GCACCAAAGTCACTGATTAAGGAT 59.298 41.667 0.00 0.00 0.00 3.24
443 456 4.072131 GCACCAAAGTCACTGATTAAGGA 58.928 43.478 0.00 0.00 0.00 3.36
445 458 5.695851 AAGCACCAAAGTCACTGATTAAG 57.304 39.130 0.00 0.00 0.00 1.85
454 467 1.405105 GACAGCAAAGCACCAAAGTCA 59.595 47.619 0.00 0.00 0.00 3.41
455 468 1.678101 AGACAGCAAAGCACCAAAGTC 59.322 47.619 0.00 0.00 0.00 3.01
457 470 1.269413 CCAGACAGCAAAGCACCAAAG 60.269 52.381 0.00 0.00 0.00 2.77
460 473 0.535780 CTCCAGACAGCAAAGCACCA 60.536 55.000 0.00 0.00 0.00 4.17
470 483 2.219458 CAATATGCAGGCTCCAGACAG 58.781 52.381 0.00 0.00 0.00 3.51
509 522 1.151668 ATCGAGCTGAACAGTGCAAC 58.848 50.000 0.00 0.00 0.00 4.17
522 535 4.360563 TCGAAATAGAAGGTCAATCGAGC 58.639 43.478 0.00 0.00 40.07 5.03
527 540 7.162082 AGAACAACTCGAAATAGAAGGTCAAT 58.838 34.615 0.00 0.00 0.00 2.57
531 544 7.042335 CCATAGAACAACTCGAAATAGAAGGT 58.958 38.462 0.00 0.00 0.00 3.50
535 548 6.222038 AGCCATAGAACAACTCGAAATAGA 57.778 37.500 0.00 0.00 0.00 1.98
559 572 1.208165 AGGGTTGGAGAAATCGGGCT 61.208 55.000 0.00 0.00 0.00 5.19
563 576 0.535335 TCGGAGGGTTGGAGAAATCG 59.465 55.000 0.00 0.00 0.00 3.34
565 578 1.004394 GGTTCGGAGGGTTGGAGAAAT 59.996 52.381 0.00 0.00 0.00 2.17
579 592 5.764686 TCTTGATGGATTATCATTGGTTCGG 59.235 40.000 0.00 0.00 44.90 4.30
580 593 6.484643 AGTCTTGATGGATTATCATTGGTTCG 59.515 38.462 0.00 0.00 44.90 3.95
581 594 7.284034 ACAGTCTTGATGGATTATCATTGGTTC 59.716 37.037 0.00 0.00 44.90 3.62
582 595 7.067859 CACAGTCTTGATGGATTATCATTGGTT 59.932 37.037 0.00 0.00 44.90 3.67
585 598 7.041303 CCTCACAGTCTTGATGGATTATCATTG 60.041 40.741 0.00 0.00 44.90 2.82
586 599 6.996879 CCTCACAGTCTTGATGGATTATCATT 59.003 38.462 0.00 0.00 44.90 2.57
594 607 1.279496 CCCCTCACAGTCTTGATGGA 58.721 55.000 7.46 0.00 34.14 3.41
599 612 4.386413 GTGCCCCTCACAGTCTTG 57.614 61.111 0.00 0.00 44.98 3.02
606 619 1.302832 CACTCAAGGTGCCCCTCAC 60.303 63.158 0.00 0.00 41.56 3.51
609 622 1.561542 CTATTCACTCAAGGTGCCCCT 59.438 52.381 0.00 0.00 45.63 4.79
610 623 1.408822 CCTATTCACTCAAGGTGCCCC 60.409 57.143 0.00 0.00 44.98 5.80
611 624 1.282157 ACCTATTCACTCAAGGTGCCC 59.718 52.381 0.00 0.00 42.08 5.36
612 625 2.749621 CAACCTATTCACTCAAGGTGCC 59.250 50.000 0.00 0.00 42.86 5.01
615 628 5.568620 AAGACAACCTATTCACTCAAGGT 57.431 39.130 0.00 0.00 45.62 3.50
616 629 7.979444 TTAAAGACAACCTATTCACTCAAGG 57.021 36.000 0.00 0.00 36.42 3.61
617 630 9.884465 CTTTTAAAGACAACCTATTCACTCAAG 57.116 33.333 0.00 0.00 0.00 3.02
618 631 9.621629 TCTTTTAAAGACAACCTATTCACTCAA 57.378 29.630 2.94 0.00 31.20 3.02
638 703 3.623060 GCTCTCATCGTGCCAATCTTTTA 59.377 43.478 0.00 0.00 0.00 1.52
642 707 0.529337 CGCTCTCATCGTGCCAATCT 60.529 55.000 0.00 0.00 0.00 2.40
651 716 1.543941 GACCGCAATCGCTCTCATCG 61.544 60.000 0.00 0.00 35.30 3.84
654 719 1.139734 GAGACCGCAATCGCTCTCA 59.860 57.895 5.46 0.00 43.41 3.27
702 768 0.527817 CTGTCGATCGTAAGCCACCC 60.528 60.000 15.94 0.00 37.18 4.61
716 782 2.410785 TATCGGCCGTATTTCTGTCG 57.589 50.000 27.15 0.00 0.00 4.35
719 785 5.862924 AAATCATATCGGCCGTATTTCTG 57.137 39.130 27.15 14.67 0.00 3.02
776 1713 3.980646 TTCAACGGAAAGACAACATGG 57.019 42.857 0.00 0.00 0.00 3.66
791 1728 3.956848 AGGGGGTCTACGTAGTATTCAAC 59.043 47.826 21.53 11.29 44.56 3.18
796 1733 3.051581 TCAGAGGGGGTCTACGTAGTAT 58.948 50.000 21.53 3.51 44.56 2.12
823 1760 8.103935 AGGAGGAGATTGTCTAAAAGTAAAAGG 58.896 37.037 0.00 0.00 0.00 3.11
843 1780 5.139727 TCGGGAATTACGTAATTAGGAGGA 58.860 41.667 28.60 19.11 36.13 3.71
941 1878 1.134068 GCTAGGGTTTTAGCTGAGGGG 60.134 57.143 0.00 0.00 42.18 4.79
947 1884 0.540454 GTCGGGCTAGGGTTTTAGCT 59.460 55.000 5.17 0.00 44.32 3.32
949 1886 0.808847 GCGTCGGGCTAGGGTTTTAG 60.809 60.000 0.00 0.00 39.11 1.85
970 1907 1.079503 GTTCTAGAAGGTTGCTGCGG 58.920 55.000 5.12 0.00 0.00 5.69
1101 2038 3.765257 ATCCAGGAGCCGGAGAGGG 62.765 68.421 5.05 0.00 41.48 4.30
1304 2241 2.163211 AGACTACTAAGGAACGCGGAAC 59.837 50.000 12.47 0.00 0.00 3.62
1314 2251 6.423302 TCGTCGCTATCTTTAGACTACTAAGG 59.577 42.308 0.00 0.00 39.36 2.69
1361 2298 5.331013 GCGACGCACAATTAAAATGATGATG 60.331 40.000 16.42 0.00 0.00 3.07
1429 2366 1.312815 ACCAGACTGAAACTGCAAGC 58.687 50.000 3.32 0.00 37.60 4.01
1452 2389 3.548745 ATAACAGCAGCATCAGCAGTA 57.451 42.857 0.00 0.00 45.49 2.74
1654 2600 8.121305 ACAGATTTTGATAACCTTGCATACAA 57.879 30.769 0.00 0.00 0.00 2.41
1702 2649 5.898397 TCTCAGGATTTCATCAGTCTCTCAT 59.102 40.000 0.00 0.00 0.00 2.90
1704 2651 5.850557 TCTCAGGATTTCATCAGTCTCTC 57.149 43.478 0.00 0.00 0.00 3.20
1706 2653 4.803088 CGTTCTCAGGATTTCATCAGTCTC 59.197 45.833 0.00 0.00 0.00 3.36
1709 2656 4.543590 ACGTTCTCAGGATTTCATCAGT 57.456 40.909 0.00 0.00 0.00 3.41
1711 2658 4.466370 ACCTACGTTCTCAGGATTTCATCA 59.534 41.667 9.10 0.00 35.76 3.07
1720 2667 6.449698 TGTTAAAACTACCTACGTTCTCAGG 58.550 40.000 0.00 0.00 37.97 3.86
1729 2676 9.485206 TTTCATCAGTCTGTTAAAACTACCTAC 57.515 33.333 0.00 0.00 0.00 3.18
1874 2821 9.620259 ATTACTTCTATTCTCAGGATTTCAACC 57.380 33.333 0.00 0.00 0.00 3.77
1980 4544 5.761818 AGCACAATACTTTTAAAATGCGC 57.238 34.783 13.44 0.00 36.93 6.09
2024 4588 8.437575 AGAAAGAATAAAGAACAGTGGGTTAGA 58.562 33.333 0.00 0.00 40.63 2.10
2134 4708 9.554724 GTTTTTGAATCTATATGAAGCACGAAA 57.445 29.630 0.00 0.00 0.00 3.46
2138 4712 9.846248 ACAAGTTTTTGAATCTATATGAAGCAC 57.154 29.630 0.00 0.00 37.73 4.40
2271 4871 6.316140 CCGAACCAAGATGAATGAATGTAAGA 59.684 38.462 0.00 0.00 0.00 2.10
2283 4896 1.377202 GCCTGCCGAACCAAGATGA 60.377 57.895 0.00 0.00 0.00 2.92
2294 4907 1.892819 TTCCTCTTCTCAGCCTGCCG 61.893 60.000 0.00 0.00 0.00 5.69
2544 5210 0.758123 AAGGGTTGTGGCATTGTTGG 59.242 50.000 0.00 0.00 0.00 3.77
2566 5232 1.265905 GGTACAGCCAAAGTTTCACCG 59.734 52.381 0.00 0.00 37.17 4.94
2592 5262 2.673775 TTTTGGGATGGCTGTTGAGA 57.326 45.000 0.00 0.00 0.00 3.27
2775 5456 4.084287 AGTTCCAATACTGACTCCGTACA 58.916 43.478 0.00 0.00 0.00 2.90
2800 5481 8.043113 TGAGCAGTAGATCAATAACAATCACTT 58.957 33.333 0.00 0.00 37.20 3.16
2872 5553 4.098914 ACAACATAAACTGCTCCTCCAA 57.901 40.909 0.00 0.00 0.00 3.53
2877 5558 5.572896 GCAACATAACAACATAAACTGCTCC 59.427 40.000 0.00 0.00 0.00 4.70
2894 5575 9.109393 GACTTTTATCCACTATTCTGCAACATA 57.891 33.333 0.00 0.00 0.00 2.29
2895 5576 7.611467 TGACTTTTATCCACTATTCTGCAACAT 59.389 33.333 0.00 0.00 0.00 2.71
2896 5577 6.939730 TGACTTTTATCCACTATTCTGCAACA 59.060 34.615 0.00 0.00 0.00 3.33
2908 5589 5.057149 ACTGTGACTGTGACTTTTATCCAC 58.943 41.667 0.00 0.00 0.00 4.02
2911 5592 8.082852 TCTAGAACTGTGACTGTGACTTTTATC 58.917 37.037 0.00 0.00 0.00 1.75
2917 5598 4.720046 TCTCTAGAACTGTGACTGTGACT 58.280 43.478 0.00 2.38 0.00 3.41
2918 5599 5.440234 TTCTCTAGAACTGTGACTGTGAC 57.560 43.478 0.00 0.00 0.00 3.67
2919 5600 4.022762 GCTTCTCTAGAACTGTGACTGTGA 60.023 45.833 0.00 0.00 0.00 3.58
2920 5601 4.233789 GCTTCTCTAGAACTGTGACTGTG 58.766 47.826 0.00 0.00 0.00 3.66
2921 5602 3.891977 TGCTTCTCTAGAACTGTGACTGT 59.108 43.478 0.00 0.00 0.00 3.55
2922 5603 4.511617 TGCTTCTCTAGAACTGTGACTG 57.488 45.455 0.00 0.00 0.00 3.51
2923 5604 5.016173 AGATGCTTCTCTAGAACTGTGACT 58.984 41.667 0.00 0.00 0.00 3.41
2949 5630 7.288810 TGAAAGAACAACCTGCATCTAATTT 57.711 32.000 0.00 0.00 0.00 1.82
2962 5643 4.936891 ACTGGAAGCAATGAAAGAACAAC 58.063 39.130 0.00 0.00 37.60 3.32
2971 5652 0.401356 TGGCAGACTGGAAGCAATGA 59.599 50.000 4.26 0.00 37.60 2.57
2975 5656 0.622136 ATCATGGCAGACTGGAAGCA 59.378 50.000 4.26 0.00 37.60 3.91
2984 5665 4.141733 TGTCCGATAAAAGATCATGGCAGA 60.142 41.667 0.00 0.00 0.00 4.26
2987 5668 4.999950 AGATGTCCGATAAAAGATCATGGC 59.000 41.667 0.00 0.00 0.00 4.40
2992 5673 6.982852 TGGAGTAGATGTCCGATAAAAGATC 58.017 40.000 0.00 0.00 36.82 2.75
2993 5674 6.517529 GCTGGAGTAGATGTCCGATAAAAGAT 60.518 42.308 0.00 0.00 36.82 2.40
2994 5675 5.221263 GCTGGAGTAGATGTCCGATAAAAGA 60.221 44.000 0.00 0.00 36.82 2.52
2995 5676 4.985409 GCTGGAGTAGATGTCCGATAAAAG 59.015 45.833 0.00 0.00 36.82 2.27
2997 5678 3.321111 GGCTGGAGTAGATGTCCGATAAA 59.679 47.826 0.00 0.00 36.82 1.40
2998 5679 2.891580 GGCTGGAGTAGATGTCCGATAA 59.108 50.000 0.00 0.00 36.82 1.75
3000 5681 1.333177 GGCTGGAGTAGATGTCCGAT 58.667 55.000 0.00 0.00 36.82 4.18
3003 5693 0.755686 CAGGGCTGGAGTAGATGTCC 59.244 60.000 0.00 0.00 34.31 4.02
3009 5699 0.463620 GAAGAGCAGGGCTGGAGTAG 59.536 60.000 0.00 0.00 39.88 2.57
3011 5701 2.297129 GGAAGAGCAGGGCTGGAGT 61.297 63.158 0.00 0.00 39.88 3.85
3017 5707 1.153005 CCATCAGGAAGAGCAGGGC 60.153 63.158 0.00 0.00 36.89 5.19
3025 5715 3.851955 GCATGGGCCATCAGGAAG 58.148 61.111 18.16 5.38 36.89 3.46
3039 5729 3.415087 GCTCAGGACAGGGGGCAT 61.415 66.667 0.00 0.00 0.00 4.40
3041 5731 4.416738 GTGCTCAGGACAGGGGGC 62.417 72.222 0.00 0.00 0.00 5.80
3042 5732 2.608988 AGTGCTCAGGACAGGGGG 60.609 66.667 0.00 0.00 0.00 5.40
3043 5733 1.611851 AGAGTGCTCAGGACAGGGG 60.612 63.158 0.00 0.00 0.00 4.79
3054 5744 1.280421 GAGAAATGGGGTCAGAGTGCT 59.720 52.381 0.00 0.00 0.00 4.40
3132 5823 1.296392 CTGCAACGGACAGGGATCA 59.704 57.895 0.00 0.00 0.00 2.92
3142 5833 0.879090 GAGGTTAAACCCTGCAACGG 59.121 55.000 0.00 0.00 39.75 4.44
3143 5834 0.879090 GGAGGTTAAACCCTGCAACG 59.121 55.000 0.00 0.00 42.17 4.10
3154 5845 0.615331 CCTGCAGCAGAGGAGGTTAA 59.385 55.000 24.90 0.00 41.71 2.01
3155 5846 0.252239 TCCTGCAGCAGAGGAGGTTA 60.252 55.000 24.90 0.00 46.21 2.85
3156 5847 1.130054 TTCCTGCAGCAGAGGAGGTT 61.130 55.000 24.90 0.00 46.21 3.50
3413 6104 4.093743 TCATGTAGCTCCAGAACAGGTAA 58.906 43.478 0.00 0.00 0.00 2.85
3414 6105 3.701542 CTCATGTAGCTCCAGAACAGGTA 59.298 47.826 0.00 0.00 0.00 3.08
3415 6106 2.499289 CTCATGTAGCTCCAGAACAGGT 59.501 50.000 0.00 0.00 0.00 4.00
3416 6107 2.499289 ACTCATGTAGCTCCAGAACAGG 59.501 50.000 0.00 0.00 0.00 4.00
3417 6108 3.883830 ACTCATGTAGCTCCAGAACAG 57.116 47.619 0.00 0.00 0.00 3.16
3418 6109 3.866066 GCAACTCATGTAGCTCCAGAACA 60.866 47.826 0.00 0.00 0.00 3.18
3419 6110 2.675348 GCAACTCATGTAGCTCCAGAAC 59.325 50.000 0.00 0.00 0.00 3.01
3420 6111 2.302733 TGCAACTCATGTAGCTCCAGAA 59.697 45.455 0.00 0.00 0.00 3.02
3421 6112 1.901833 TGCAACTCATGTAGCTCCAGA 59.098 47.619 0.00 0.00 0.00 3.86
3422 6113 2.391616 TGCAACTCATGTAGCTCCAG 57.608 50.000 0.00 0.00 0.00 3.86
3423 6114 2.616256 CCTTGCAACTCATGTAGCTCCA 60.616 50.000 0.00 0.00 0.00 3.86
3424 6115 2.012673 CCTTGCAACTCATGTAGCTCC 58.987 52.381 0.00 0.00 0.00 4.70
3425 6116 2.417933 CACCTTGCAACTCATGTAGCTC 59.582 50.000 0.00 0.00 0.00 4.09
3426 6117 2.038952 TCACCTTGCAACTCATGTAGCT 59.961 45.455 0.00 0.00 0.00 3.32
3427 6118 2.417933 CTCACCTTGCAACTCATGTAGC 59.582 50.000 0.00 0.00 0.00 3.58
3428 6119 3.668447 ACTCACCTTGCAACTCATGTAG 58.332 45.455 0.00 0.00 0.00 2.74
3429 6120 3.557054 GGACTCACCTTGCAACTCATGTA 60.557 47.826 0.00 0.00 35.41 2.29
3430 6121 2.498167 GACTCACCTTGCAACTCATGT 58.502 47.619 0.00 0.00 0.00 3.21
3431 6122 1.808945 GGACTCACCTTGCAACTCATG 59.191 52.381 0.00 0.00 35.41 3.07
3432 6123 1.421268 TGGACTCACCTTGCAACTCAT 59.579 47.619 0.00 0.00 39.86 2.90
3433 6124 0.836606 TGGACTCACCTTGCAACTCA 59.163 50.000 0.00 0.00 39.86 3.41
3434 6125 2.191128 ATGGACTCACCTTGCAACTC 57.809 50.000 0.00 0.00 39.86 3.01
3435 6126 2.664402 AATGGACTCACCTTGCAACT 57.336 45.000 0.00 0.00 39.86 3.16
3436 6127 2.622942 TGAAATGGACTCACCTTGCAAC 59.377 45.455 0.00 0.00 39.86 4.17
3437 6128 2.942804 TGAAATGGACTCACCTTGCAA 58.057 42.857 0.00 0.00 39.86 4.08
3438 6129 2.655090 TGAAATGGACTCACCTTGCA 57.345 45.000 0.00 0.00 39.86 4.08
3439 6130 2.352127 GCTTGAAATGGACTCACCTTGC 60.352 50.000 0.00 0.00 39.86 4.01
3440 6131 3.057736 CAGCTTGAAATGGACTCACCTTG 60.058 47.826 0.00 0.00 39.86 3.61
3441 6132 3.152341 CAGCTTGAAATGGACTCACCTT 58.848 45.455 0.00 0.00 39.86 3.50
3442 6133 2.107204 ACAGCTTGAAATGGACTCACCT 59.893 45.455 0.00 0.00 39.86 4.00
3443 6134 2.485814 GACAGCTTGAAATGGACTCACC 59.514 50.000 0.00 0.00 39.54 4.02
3444 6135 3.820777 GACAGCTTGAAATGGACTCAC 57.179 47.619 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.