Multiple sequence alignment - TraesCS1A01G068000
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS1A01G068000
chr1A
100.000
1775
0
0
1
1775
49368134
49366360
0.000000e+00
3278.0
1
TraesCS1A01G068000
chr1A
100.000
1320
0
0
1875
3194
49366260
49364941
0.000000e+00
2438.0
2
TraesCS1A01G068000
chr1A
88.590
780
75
11
999
1775
562034825
562034057
0.000000e+00
935.0
3
TraesCS1A01G068000
chr1A
87.868
272
14
7
2210
2476
562032341
562032084
5.620000e-78
302.0
4
TraesCS1A01G068000
chr1A
79.343
213
28
8
2538
2735
562032065
562031854
6.030000e-28
135.0
5
TraesCS1A01G068000
chr1A
100.000
52
0
0
3414
3465
49364721
49364670
2.850000e-16
97.1
6
TraesCS1A01G068000
chr1D
90.363
1349
73
24
1878
3194
50197249
50195926
0.000000e+00
1718.0
7
TraesCS1A01G068000
chr1D
94.123
1021
50
6
756
1775
50198274
50197263
0.000000e+00
1544.0
8
TraesCS1A01G068000
chr1D
86.393
779
66
19
999
1775
469041406
469040666
0.000000e+00
815.0
9
TraesCS1A01G068000
chr1D
84.270
623
79
11
1
607
50199963
50199344
1.070000e-164
590.0
10
TraesCS1A01G068000
chr1D
87.687
268
22
10
2210
2476
469035674
469035417
5.620000e-78
302.0
11
TraesCS1A01G068000
chr1B
91.845
981
62
10
805
1773
70712681
70711707
0.000000e+00
1352.0
12
TraesCS1A01G068000
chr1B
81.685
1365
168
49
1878
3194
70711728
70710398
0.000000e+00
1061.0
13
TraesCS1A01G068000
chr1B
88.432
778
70
14
999
1775
648588060
648587302
0.000000e+00
920.0
14
TraesCS1A01G068000
chr1B
87.407
270
15
5
2210
2474
648585661
648585406
3.380000e-75
292.0
15
TraesCS1A01G068000
chr1B
86.957
115
13
2
2621
2735
648585287
648585175
1.010000e-25
128.0
16
TraesCS1A01G068000
chr7B
86.757
370
31
7
2121
2476
34154573
34154208
2.510000e-106
396.0
17
TraesCS1A01G068000
chr3B
86.486
370
32
10
2121
2476
89686526
89686161
1.170000e-104
390.0
18
TraesCS1A01G068000
chr3B
78.704
108
21
2
295
400
550805991
550806098
1.730000e-08
71.3
19
TraesCS1A01G068000
chr7D
79.739
153
19
6
236
377
539708561
539708712
2.200000e-17
100.0
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS1A01G068000
chr1A
49364670
49368134
3464
True
1937.700000
3278
100.000000
1
3465
3
chr1A.!!$R1
3464
1
TraesCS1A01G068000
chr1A
562031854
562034825
2971
True
457.333333
935
85.267000
999
2735
3
chr1A.!!$R2
1736
2
TraesCS1A01G068000
chr1D
50195926
50199963
4037
True
1284.000000
1718
89.585333
1
3194
3
chr1D.!!$R3
3193
3
TraesCS1A01G068000
chr1D
469040666
469041406
740
True
815.000000
815
86.393000
999
1775
1
chr1D.!!$R2
776
4
TraesCS1A01G068000
chr1B
70710398
70712681
2283
True
1206.500000
1352
86.765000
805
3194
2
chr1B.!!$R1
2389
5
TraesCS1A01G068000
chr1B
648585175
648588060
2885
True
446.666667
920
87.598667
999
2735
3
chr1B.!!$R2
1736
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
580
593
0.107165
CCCGATTTCTCCAACCCTCC
60.107
60.0
0.0
0.0
0.0
4.3
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
2544
5210
0.758123
AAGGGTTGTGGCATTGTTGG
59.242
50.0
0.0
0.0
0.0
3.77
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
64
65
5.173664
TGAGATGCACAGATACACTTTCTG
58.826
41.667
0.00
0.00
44.95
3.02
67
68
6.233434
AGATGCACAGATACACTTTCTGAAA
58.767
36.000
7.63
2.44
42.63
2.69
70
71
5.149977
GCACAGATACACTTTCTGAAAAGC
58.850
41.667
7.63
3.08
44.82
3.51
78
79
5.095490
ACACTTTCTGAAAAGCGAAAAGTG
58.905
37.500
19.28
19.28
44.82
3.16
80
81
2.383298
TCTGAAAAGCGAAAAGTGCG
57.617
45.000
0.00
0.00
37.44
5.34
85
86
2.103410
AAGCGAAAAGTGCGGTTGT
58.897
47.368
0.00
0.00
46.12
3.32
86
87
0.248458
AAGCGAAAAGTGCGGTTGTG
60.248
50.000
0.00
0.00
46.12
3.33
96
97
1.923864
GTGCGGTTGTGTTTCCAAAAG
59.076
47.619
0.00
0.00
0.00
2.27
114
116
6.534793
TCCAAAAGATTGAAAAAGCACAACTC
59.465
34.615
0.00
0.00
38.94
3.01
130
132
4.576463
CACAACTCTGCTTCTAGGTTTTGT
59.424
41.667
0.00
0.00
0.00
2.83
202
204
9.425577
TGTTTTTATTTCGGTTTCTGACTTTTT
57.574
25.926
0.00
0.00
0.00
1.94
250
262
8.575649
AAAACTTCATCGAAACCTATTACCAT
57.424
30.769
0.00
0.00
0.00
3.55
260
272
6.210784
CGAAACCTATTACCATGGGATCTAGA
59.789
42.308
18.09
0.00
34.53
2.43
263
275
8.525729
AACCTATTACCATGGGATCTAGATTT
57.474
34.615
18.09
6.02
34.53
2.17
278
290
4.976731
TCTAGATTTAAAGTCTCGATGCGC
59.023
41.667
0.00
0.00
0.00
6.09
289
301
2.177339
CGATGCGCGAAATTCAACG
58.823
52.632
12.10
4.39
44.57
4.10
294
306
1.577616
CGCGAAATTCAACGGCTCG
60.578
57.895
0.00
0.00
0.00
5.03
308
320
0.517316
GGCTCGTGATTTGGACACAC
59.483
55.000
0.00
0.00
38.04
3.82
309
321
1.225855
GCTCGTGATTTGGACACACA
58.774
50.000
0.00
0.00
38.04
3.72
310
322
1.195448
GCTCGTGATTTGGACACACAG
59.805
52.381
0.00
0.00
38.04
3.66
323
335
6.114187
TGGACACACAGTTCAAGAGATAAT
57.886
37.500
0.00
0.00
31.00
1.28
324
336
6.533730
TGGACACACAGTTCAAGAGATAATT
58.466
36.000
0.00
0.00
31.00
1.40
374
387
2.411069
GGAAAAGCTTCGAGGTTACGAC
59.589
50.000
0.00
0.00
41.97
4.34
380
393
2.093783
GCTTCGAGGTTACGACAATTGG
59.906
50.000
10.83
0.00
41.97
3.16
387
400
2.250188
GTTACGACAATTGGCATGCAC
58.750
47.619
21.36
9.64
0.00
4.57
389
402
2.153945
CGACAATTGGCATGCACGC
61.154
57.895
21.36
0.00
0.00
5.34
390
403
1.080637
GACAATTGGCATGCACGCA
60.081
52.632
21.36
5.42
0.00
5.24
393
406
0.170784
CAATTGGCATGCACGCAGTA
59.829
50.000
21.36
0.00
41.61
2.74
409
422
2.404215
CAGTACGTCACTTGTTCCCAG
58.596
52.381
0.00
0.00
34.26
4.45
441
454
0.178961
GAGGGACTTTTGCAAGGGGT
60.179
55.000
0.00
0.00
41.55
4.95
442
455
1.074889
GAGGGACTTTTGCAAGGGGTA
59.925
52.381
0.00
0.00
41.55
3.69
443
456
1.716503
AGGGACTTTTGCAAGGGGTAT
59.283
47.619
0.00
0.00
27.25
2.73
445
458
2.100197
GGACTTTTGCAAGGGGTATCC
58.900
52.381
0.00
0.00
33.82
2.59
460
473
5.731678
AGGGGTATCCTTAATCAGTGACTTT
59.268
40.000
0.00
0.00
45.47
2.66
470
483
1.405105
TCAGTGACTTTGGTGCTTTGC
59.595
47.619
0.00
0.00
0.00
3.68
509
522
5.560966
ATTGTTTAGTTTAGATGTGCCCG
57.439
39.130
0.00
0.00
0.00
6.13
522
535
2.639286
GCCCGTTGCACTGTTCAG
59.361
61.111
0.00
0.00
40.77
3.02
527
540
1.215014
CGTTGCACTGTTCAGCTCGA
61.215
55.000
0.00
0.00
33.47
4.04
531
544
1.270252
TGCACTGTTCAGCTCGATTGA
60.270
47.619
0.00
0.00
0.00
2.57
535
548
2.037772
ACTGTTCAGCTCGATTGACCTT
59.962
45.455
0.00
0.00
0.00
3.50
559
572
7.342769
TCTATTTCGAGTTGTTCTATGGCTA
57.657
36.000
0.00
0.00
0.00
3.93
563
576
2.803492
CGAGTTGTTCTATGGCTAGCCC
60.803
54.545
30.81
14.58
34.56
5.19
565
578
1.138266
GTTGTTCTATGGCTAGCCCGA
59.862
52.381
30.81
20.46
35.87
5.14
579
592
0.748367
GCCCGATTTCTCCAACCCTC
60.748
60.000
0.00
0.00
0.00
4.30
580
593
0.107165
CCCGATTTCTCCAACCCTCC
60.107
60.000
0.00
0.00
0.00
4.30
581
594
0.462047
CCGATTTCTCCAACCCTCCG
60.462
60.000
0.00
0.00
0.00
4.63
582
595
0.535335
CGATTTCTCCAACCCTCCGA
59.465
55.000
0.00
0.00
0.00
4.55
585
598
0.399075
TTTCTCCAACCCTCCGAACC
59.601
55.000
0.00
0.00
0.00
3.62
586
599
0.765135
TTCTCCAACCCTCCGAACCA
60.765
55.000
0.00
0.00
0.00
3.67
594
607
4.207165
CAACCCTCCGAACCAATGATAAT
58.793
43.478
0.00
0.00
0.00
1.28
599
612
4.697352
CCTCCGAACCAATGATAATCCATC
59.303
45.833
0.00
0.00
0.00
3.51
601
614
5.689835
TCCGAACCAATGATAATCCATCAA
58.310
37.500
0.00
0.00
46.66
2.57
602
615
5.764686
TCCGAACCAATGATAATCCATCAAG
59.235
40.000
0.00
0.00
46.66
3.02
604
617
6.293626
CCGAACCAATGATAATCCATCAAGAC
60.294
42.308
0.00
0.00
46.66
3.01
605
618
6.484643
CGAACCAATGATAATCCATCAAGACT
59.515
38.462
0.00
0.00
46.66
3.24
606
619
7.519488
CGAACCAATGATAATCCATCAAGACTG
60.519
40.741
0.00
0.00
46.66
3.51
609
622
6.769341
CCAATGATAATCCATCAAGACTGTGA
59.231
38.462
0.00
0.00
46.66
3.58
610
623
7.041303
CCAATGATAATCCATCAAGACTGTGAG
60.041
40.741
0.00
0.00
46.66
3.51
611
624
5.922053
TGATAATCCATCAAGACTGTGAGG
58.078
41.667
0.00
0.00
40.80
3.86
615
628
0.325933
CATCAAGACTGTGAGGGGCA
59.674
55.000
0.00
0.00
0.00
5.36
638
703
5.941788
ACCTTGAGTGAATAGGTTGTCTTT
58.058
37.500
0.00
0.00
39.19
2.52
642
707
8.846211
CCTTGAGTGAATAGGTTGTCTTTAAAA
58.154
33.333
0.00
0.00
0.00
1.52
651
716
5.842907
AGGTTGTCTTTAAAAGATTGGCAC
58.157
37.500
0.00
0.00
40.18
5.01
654
719
5.957842
TGTCTTTAAAAGATTGGCACGAT
57.042
34.783
0.00
0.00
40.18
3.73
658
723
5.937540
TCTTTAAAAGATTGGCACGATGAGA
59.062
36.000
0.00
0.00
31.20
3.27
702
768
4.632688
TCTTACCTTTTTAAATCTCCGGCG
59.367
41.667
0.00
0.00
0.00
6.46
716
782
2.588034
GGCGGGTGGCTTACGATC
60.588
66.667
0.00
0.00
42.94
3.69
719
785
1.588139
CGGGTGGCTTACGATCGAC
60.588
63.158
24.34
8.04
0.00
4.20
734
800
0.742505
TCGACAGAAATACGGCCGAT
59.257
50.000
35.90
18.27
0.00
4.18
745
811
5.371115
AATACGGCCGATATGATTTTTGG
57.629
39.130
35.90
0.00
0.00
3.28
749
815
2.223711
GGCCGATATGATTTTTGGCGTT
60.224
45.455
0.00
0.00
43.36
4.84
776
1713
1.634702
TTTTGCTGGTCGTTTTGTGC
58.365
45.000
0.00
0.00
0.00
4.57
791
1728
0.950836
TGTGCCATGTTGTCTTTCCG
59.049
50.000
0.00
0.00
0.00
4.30
796
1733
2.034053
GCCATGTTGTCTTTCCGTTGAA
59.966
45.455
0.00
0.00
0.00
2.69
823
1760
1.340568
GTAGACCCCCTCTGATTACGC
59.659
57.143
0.00
0.00
0.00
4.42
843
1780
8.611654
TTACGCCTTTTACTTTTAGACAATCT
57.388
30.769
0.00
0.00
0.00
2.40
884
1821
3.175133
AAGGGCGCCTTCAACTATG
57.825
52.632
28.56
0.00
40.17
2.23
915
1852
2.202730
GCTCTCTCAGCGCTGGAC
60.203
66.667
35.36
16.14
38.76
4.02
947
1884
4.722535
AGCTCGCCTTCCCCCTCA
62.723
66.667
0.00
0.00
0.00
3.86
949
1886
4.168291
CTCGCCTTCCCCCTCAGC
62.168
72.222
0.00
0.00
0.00
4.26
1304
2241
1.065928
GTACGGGTGATCTCTGCCG
59.934
63.158
9.90
9.90
0.00
5.69
1314
2251
3.479269
CTCTGCCGTTCCGCGTTC
61.479
66.667
4.92
0.00
39.32
3.95
1361
2298
4.159377
TCTGCACAATTCGTTTTGGATC
57.841
40.909
5.37
0.00
0.00
3.36
1452
2389
4.022849
GCTTGCAGTTTCAGTCTGGTTAAT
60.023
41.667
0.00
0.00
33.98
1.40
1501
2438
1.215647
GTCCGCACTACTGGGTGAG
59.784
63.158
7.11
4.14
39.34
3.51
1607
2544
1.667724
CGCAAGGACTTCATCATGGTC
59.332
52.381
0.00
0.00
0.00
4.02
1654
2600
5.911752
TGCTTGTTTTAATTGTGTGATGGT
58.088
33.333
0.00
0.00
0.00
3.55
1691
2638
9.155975
GTTATCAAAATCTGTATGTGTCTCTGT
57.844
33.333
0.00
0.00
0.00
3.41
1729
2676
4.753233
AGACTGATGAAATCCTGAGAACG
58.247
43.478
0.00
0.00
44.73
3.95
1771
2718
6.157645
ACTGATGAAATCCTGAGAACATAGGT
59.842
38.462
0.00
0.00
44.73
3.08
2134
4708
8.642432
TCAATACTTACTATCATGCAGCTTACT
58.358
33.333
0.00
0.00
0.00
2.24
2138
4712
6.477033
ACTTACTATCATGCAGCTTACTTTCG
59.523
38.462
0.00
0.00
0.00
3.46
2244
4844
9.436957
CTGTCCATATGTCTAATAATTACCCAC
57.563
37.037
1.24
0.00
0.00
4.61
2521
5135
1.373497
CTGCTGCTCCGTTTCGTCT
60.373
57.895
0.00
0.00
0.00
4.18
2524
5138
0.667792
GCTGCTCCGTTTCGTCTCTT
60.668
55.000
0.00
0.00
0.00
2.85
2566
5232
1.620822
ACAATGCCACAACCCTTCTC
58.379
50.000
0.00
0.00
0.00
2.87
2592
5262
0.475828
ACTTTGGCTGTACCCCTCCT
60.476
55.000
0.00
0.00
37.83
3.69
2775
5456
5.769662
TGTCACATTTATGGCAGAGAAGTTT
59.230
36.000
0.00
0.00
28.84
2.66
2800
5481
4.084287
ACGGAGTCAGTATTGGAACTACA
58.916
43.478
0.00
0.00
29.74
2.74
2857
5538
1.229145
CCCTTTGCATTCCACCCCA
60.229
57.895
0.00
0.00
0.00
4.96
2872
5553
2.238144
CACCCCATCAGTTCTGATGTCT
59.762
50.000
29.06
15.43
42.93
3.41
2877
5558
4.190001
CCATCAGTTCTGATGTCTTGGAG
58.810
47.826
29.06
15.61
42.93
3.86
2894
5575
4.098914
TGGAGGAGCAGTTTATGTTGTT
57.901
40.909
0.00
0.00
0.00
2.83
2895
5576
5.235850
TGGAGGAGCAGTTTATGTTGTTA
57.764
39.130
0.00
0.00
0.00
2.41
2896
5577
5.815581
TGGAGGAGCAGTTTATGTTGTTAT
58.184
37.500
0.00
0.00
0.00
1.89
2911
5592
6.252967
TGTTGTTATGTTGCAGAATAGTGG
57.747
37.500
0.00
0.00
0.00
4.00
2917
5598
9.237187
TGTTATGTTGCAGAATAGTGGATAAAA
57.763
29.630
0.00
0.00
0.00
1.52
2918
5599
9.722056
GTTATGTTGCAGAATAGTGGATAAAAG
57.278
33.333
0.00
0.00
0.00
2.27
2919
5600
7.944729
ATGTTGCAGAATAGTGGATAAAAGT
57.055
32.000
0.00
0.00
0.00
2.66
2920
5601
7.377766
TGTTGCAGAATAGTGGATAAAAGTC
57.622
36.000
0.00
0.00
0.00
3.01
2921
5602
6.939730
TGTTGCAGAATAGTGGATAAAAGTCA
59.060
34.615
0.00
0.00
0.00
3.41
2922
5603
6.985188
TGCAGAATAGTGGATAAAAGTCAC
57.015
37.500
0.00
0.00
0.00
3.67
2923
5604
6.472016
TGCAGAATAGTGGATAAAAGTCACA
58.528
36.000
0.00
0.00
34.17
3.58
2949
5630
7.996066
AGTCACAGTTCTAGAGAAGCATCTATA
59.004
37.037
0.00
0.00
35.54
1.31
2975
5656
6.899393
TTAGATGCAGGTTGTTCTTTCATT
57.101
33.333
0.00
0.00
0.00
2.57
2984
5665
4.202151
GGTTGTTCTTTCATTGCTTCCAGT
60.202
41.667
0.00
0.00
0.00
4.00
2987
5668
4.276678
TGTTCTTTCATTGCTTCCAGTCTG
59.723
41.667
0.00
0.00
0.00
3.51
2992
5673
1.134367
CATTGCTTCCAGTCTGCCATG
59.866
52.381
0.00
0.00
0.00
3.66
2993
5674
0.401356
TTGCTTCCAGTCTGCCATGA
59.599
50.000
0.00
0.00
0.00
3.07
2994
5675
0.622136
TGCTTCCAGTCTGCCATGAT
59.378
50.000
0.00
0.00
0.00
2.45
2995
5676
1.307097
GCTTCCAGTCTGCCATGATC
58.693
55.000
0.00
0.00
0.00
2.92
2997
5678
2.683152
GCTTCCAGTCTGCCATGATCTT
60.683
50.000
0.00
0.00
0.00
2.40
2998
5679
3.618351
CTTCCAGTCTGCCATGATCTTT
58.382
45.455
0.00
0.00
0.00
2.52
3000
5681
4.842531
TCCAGTCTGCCATGATCTTTTA
57.157
40.909
0.00
0.00
0.00
1.52
3003
5693
4.212847
CCAGTCTGCCATGATCTTTTATCG
59.787
45.833
0.00
0.00
0.00
2.92
3009
5699
4.756642
TGCCATGATCTTTTATCGGACATC
59.243
41.667
0.00
0.00
0.00
3.06
3011
5701
6.166279
GCCATGATCTTTTATCGGACATCTA
58.834
40.000
0.00
0.00
0.00
1.98
3017
5707
6.392625
TCTTTTATCGGACATCTACTCCAG
57.607
41.667
0.00
0.00
0.00
3.86
3025
5715
0.392336
CATCTACTCCAGCCCTGCTC
59.608
60.000
0.00
0.00
36.40
4.26
3030
5720
1.994507
CTCCAGCCCTGCTCTTCCT
60.995
63.158
0.00
0.00
36.40
3.36
3032
5722
2.296365
CCAGCCCTGCTCTTCCTGA
61.296
63.158
0.00
0.00
36.40
3.86
3039
5729
1.918467
CTGCTCTTCCTGATGGCCCA
61.918
60.000
0.00
0.00
0.00
5.36
3041
5731
0.822532
GCTCTTCCTGATGGCCCATG
60.823
60.000
0.00
0.00
0.00
3.66
3042
5732
0.822532
CTCTTCCTGATGGCCCATGC
60.823
60.000
0.00
0.00
0.00
4.06
3054
5744
3.016971
CCATGCCCCCTGTCCTGA
61.017
66.667
0.00
0.00
0.00
3.86
3074
5764
1.280421
AGCACTCTGACCCCATTTCTC
59.720
52.381
0.00
0.00
0.00
2.87
3106
5797
1.606224
GCCTGGCAATTGTGGTTCAAG
60.606
52.381
15.17
0.00
39.55
3.02
3142
5833
1.952296
GGATGCACAATGATCCCTGTC
59.048
52.381
0.00
0.00
33.21
3.51
3143
5834
1.952296
GATGCACAATGATCCCTGTCC
59.048
52.381
0.00
0.00
0.00
4.02
3155
5846
4.157607
CTGTCCGTTGCAGGGTTT
57.842
55.556
5.86
0.00
0.00
3.27
3156
5847
3.315765
CTGTCCGTTGCAGGGTTTA
57.684
52.632
5.86
0.00
0.00
2.01
3163
5854
1.544759
CGTTGCAGGGTTTAACCTCCT
60.545
52.381
14.27
0.41
39.34
3.69
3166
5857
1.351017
TGCAGGGTTTAACCTCCTCTG
59.649
52.381
14.27
12.90
39.34
3.35
3170
5861
1.454201
GGTTTAACCTCCTCTGCTGC
58.546
55.000
6.92
0.00
34.73
5.25
3172
5863
2.079925
GTTTAACCTCCTCTGCTGCAG
58.920
52.381
23.31
23.31
0.00
4.41
3434
6125
4.471904
TTACCTGTTCTGGAGCTACATG
57.528
45.455
0.00
0.00
0.00
3.21
3435
6126
2.540383
ACCTGTTCTGGAGCTACATGA
58.460
47.619
0.00
0.00
0.00
3.07
3436
6127
2.499289
ACCTGTTCTGGAGCTACATGAG
59.501
50.000
0.00
0.00
0.00
2.90
3437
6128
2.499289
CCTGTTCTGGAGCTACATGAGT
59.501
50.000
0.00
0.00
0.00
3.41
3438
6129
3.055530
CCTGTTCTGGAGCTACATGAGTT
60.056
47.826
0.00
0.00
0.00
3.01
3439
6130
3.930336
TGTTCTGGAGCTACATGAGTTG
58.070
45.455
0.00
0.00
0.00
3.16
3440
6131
2.675348
GTTCTGGAGCTACATGAGTTGC
59.325
50.000
0.00
0.00
45.09
4.17
3441
6132
1.901833
TCTGGAGCTACATGAGTTGCA
59.098
47.619
0.00
1.51
46.76
4.08
3442
6133
2.302733
TCTGGAGCTACATGAGTTGCAA
59.697
45.455
0.00
0.00
46.76
4.08
3443
6134
2.676839
CTGGAGCTACATGAGTTGCAAG
59.323
50.000
0.00
0.00
46.76
4.01
3444
6135
2.012673
GGAGCTACATGAGTTGCAAGG
58.987
52.381
0.00
0.00
46.76
3.61
3445
6136
2.616510
GGAGCTACATGAGTTGCAAGGT
60.617
50.000
0.00
0.00
46.76
3.50
3446
6137
2.417933
GAGCTACATGAGTTGCAAGGTG
59.582
50.000
0.00
0.00
46.76
4.00
3447
6138
2.038952
AGCTACATGAGTTGCAAGGTGA
59.961
45.455
0.00
0.00
46.76
4.02
3448
6139
2.417933
GCTACATGAGTTGCAAGGTGAG
59.582
50.000
0.00
0.00
44.32
3.51
3449
6140
2.645838
ACATGAGTTGCAAGGTGAGT
57.354
45.000
0.00
0.00
0.00
3.41
3450
6141
2.498167
ACATGAGTTGCAAGGTGAGTC
58.502
47.619
0.00
0.00
0.00
3.36
3451
6142
1.808945
CATGAGTTGCAAGGTGAGTCC
59.191
52.381
0.00
0.00
0.00
3.85
3452
6143
0.836606
TGAGTTGCAAGGTGAGTCCA
59.163
50.000
0.00
0.00
39.02
4.02
3453
6144
1.421268
TGAGTTGCAAGGTGAGTCCAT
59.579
47.619
0.00
0.00
39.02
3.41
3454
6145
2.158623
TGAGTTGCAAGGTGAGTCCATT
60.159
45.455
0.00
0.00
39.02
3.16
3455
6146
2.887152
GAGTTGCAAGGTGAGTCCATTT
59.113
45.455
0.00
0.00
39.02
2.32
3456
6147
2.887152
AGTTGCAAGGTGAGTCCATTTC
59.113
45.455
0.00
0.00
39.02
2.17
3457
6148
2.622942
GTTGCAAGGTGAGTCCATTTCA
59.377
45.455
0.00
0.00
39.02
2.69
3458
6149
2.942804
TGCAAGGTGAGTCCATTTCAA
58.057
42.857
0.00
0.00
39.02
2.69
3459
6150
2.886523
TGCAAGGTGAGTCCATTTCAAG
59.113
45.455
0.00
0.00
39.02
3.02
3460
6151
2.352127
GCAAGGTGAGTCCATTTCAAGC
60.352
50.000
0.00
0.00
39.02
4.01
3461
6152
3.152341
CAAGGTGAGTCCATTTCAAGCT
58.848
45.455
0.00
0.00
39.02
3.74
3462
6153
2.787994
AGGTGAGTCCATTTCAAGCTG
58.212
47.619
0.00
0.00
39.02
4.24
3463
6154
2.107204
AGGTGAGTCCATTTCAAGCTGT
59.893
45.455
0.00
0.00
39.02
4.40
3464
6155
2.485814
GGTGAGTCCATTTCAAGCTGTC
59.514
50.000
0.00
0.00
35.97
3.51
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
28
29
4.212143
TGCATCTCATAGAAGCACAAGT
57.788
40.909
2.92
0.00
43.06
3.16
64
65
1.516864
CAACCGCACTTTTCGCTTTTC
59.483
47.619
0.00
0.00
0.00
2.29
67
68
0.248458
CACAACCGCACTTTTCGCTT
60.248
50.000
0.00
0.00
0.00
4.68
70
71
1.843753
GAAACACAACCGCACTTTTCG
59.156
47.619
0.00
0.00
0.00
3.46
78
79
2.570442
TCTTTTGGAAACACAACCGC
57.430
45.000
0.00
0.00
42.67
5.68
80
81
6.976636
TTTCAATCTTTTGGAAACACAACC
57.023
33.333
0.00
0.00
42.67
3.77
85
86
6.652481
TGTGCTTTTTCAATCTTTTGGAAACA
59.348
30.769
0.00
0.00
39.51
2.83
86
87
7.071014
TGTGCTTTTTCAATCTTTTGGAAAC
57.929
32.000
0.00
0.00
39.51
2.78
96
97
4.961433
GCAGAGTTGTGCTTTTTCAATC
57.039
40.909
0.00
0.00
40.54
2.67
247
259
6.870965
CGAGACTTTAAATCTAGATCCCATGG
59.129
42.308
5.51
4.14
0.00
3.66
248
260
7.661968
TCGAGACTTTAAATCTAGATCCCATG
58.338
38.462
5.51
0.03
0.00
3.66
250
262
7.661968
CATCGAGACTTTAAATCTAGATCCCA
58.338
38.462
5.51
0.00
36.68
4.37
260
272
2.536365
TCGCGCATCGAGACTTTAAAT
58.464
42.857
8.75
0.00
43.16
1.40
278
290
0.787787
TCACGAGCCGTTGAATTTCG
59.212
50.000
0.00
0.00
38.32
3.46
289
301
0.517316
GTGTGTCCAAATCACGAGCC
59.483
55.000
0.00
0.00
38.48
4.70
294
306
4.335315
TCTTGAACTGTGTGTCCAAATCAC
59.665
41.667
0.00
0.00
36.48
3.06
355
368
3.102052
TGTCGTAACCTCGAAGCTTTT
57.898
42.857
0.00
0.00
41.47
2.27
374
387
0.170784
TACTGCGTGCATGCCAATTG
59.829
50.000
27.43
14.27
0.00
2.32
389
402
2.404215
CTGGGAACAAGTGACGTACTG
58.596
52.381
0.00
0.00
42.06
2.74
390
403
1.270147
GCTGGGAACAAGTGACGTACT
60.270
52.381
0.00
0.00
42.06
2.73
393
406
0.532862
CTGCTGGGAACAAGTGACGT
60.533
55.000
0.00
0.00
42.06
4.34
395
408
1.070758
TCTCTGCTGGGAACAAGTGAC
59.929
52.381
0.00
0.00
42.06
3.67
396
409
1.423584
TCTCTGCTGGGAACAAGTGA
58.576
50.000
0.00
0.00
42.06
3.41
404
417
2.768527
CCTCTTACATTCTCTGCTGGGA
59.231
50.000
0.00
0.00
0.00
4.37
405
418
2.158842
CCCTCTTACATTCTCTGCTGGG
60.159
54.545
0.00
0.00
0.00
4.45
409
422
4.479786
AAGTCCCTCTTACATTCTCTGC
57.520
45.455
0.00
0.00
34.23
4.26
441
454
5.880332
GCACCAAAGTCACTGATTAAGGATA
59.120
40.000
0.00
0.00
0.00
2.59
442
455
4.702131
GCACCAAAGTCACTGATTAAGGAT
59.298
41.667
0.00
0.00
0.00
3.24
443
456
4.072131
GCACCAAAGTCACTGATTAAGGA
58.928
43.478
0.00
0.00
0.00
3.36
445
458
5.695851
AAGCACCAAAGTCACTGATTAAG
57.304
39.130
0.00
0.00
0.00
1.85
454
467
1.405105
GACAGCAAAGCACCAAAGTCA
59.595
47.619
0.00
0.00
0.00
3.41
455
468
1.678101
AGACAGCAAAGCACCAAAGTC
59.322
47.619
0.00
0.00
0.00
3.01
457
470
1.269413
CCAGACAGCAAAGCACCAAAG
60.269
52.381
0.00
0.00
0.00
2.77
460
473
0.535780
CTCCAGACAGCAAAGCACCA
60.536
55.000
0.00
0.00
0.00
4.17
470
483
2.219458
CAATATGCAGGCTCCAGACAG
58.781
52.381
0.00
0.00
0.00
3.51
509
522
1.151668
ATCGAGCTGAACAGTGCAAC
58.848
50.000
0.00
0.00
0.00
4.17
522
535
4.360563
TCGAAATAGAAGGTCAATCGAGC
58.639
43.478
0.00
0.00
40.07
5.03
527
540
7.162082
AGAACAACTCGAAATAGAAGGTCAAT
58.838
34.615
0.00
0.00
0.00
2.57
531
544
7.042335
CCATAGAACAACTCGAAATAGAAGGT
58.958
38.462
0.00
0.00
0.00
3.50
535
548
6.222038
AGCCATAGAACAACTCGAAATAGA
57.778
37.500
0.00
0.00
0.00
1.98
559
572
1.208165
AGGGTTGGAGAAATCGGGCT
61.208
55.000
0.00
0.00
0.00
5.19
563
576
0.535335
TCGGAGGGTTGGAGAAATCG
59.465
55.000
0.00
0.00
0.00
3.34
565
578
1.004394
GGTTCGGAGGGTTGGAGAAAT
59.996
52.381
0.00
0.00
0.00
2.17
579
592
5.764686
TCTTGATGGATTATCATTGGTTCGG
59.235
40.000
0.00
0.00
44.90
4.30
580
593
6.484643
AGTCTTGATGGATTATCATTGGTTCG
59.515
38.462
0.00
0.00
44.90
3.95
581
594
7.284034
ACAGTCTTGATGGATTATCATTGGTTC
59.716
37.037
0.00
0.00
44.90
3.62
582
595
7.067859
CACAGTCTTGATGGATTATCATTGGTT
59.932
37.037
0.00
0.00
44.90
3.67
585
598
7.041303
CCTCACAGTCTTGATGGATTATCATTG
60.041
40.741
0.00
0.00
44.90
2.82
586
599
6.996879
CCTCACAGTCTTGATGGATTATCATT
59.003
38.462
0.00
0.00
44.90
2.57
594
607
1.279496
CCCCTCACAGTCTTGATGGA
58.721
55.000
7.46
0.00
34.14
3.41
599
612
4.386413
GTGCCCCTCACAGTCTTG
57.614
61.111
0.00
0.00
44.98
3.02
606
619
1.302832
CACTCAAGGTGCCCCTCAC
60.303
63.158
0.00
0.00
41.56
3.51
609
622
1.561542
CTATTCACTCAAGGTGCCCCT
59.438
52.381
0.00
0.00
45.63
4.79
610
623
1.408822
CCTATTCACTCAAGGTGCCCC
60.409
57.143
0.00
0.00
44.98
5.80
611
624
1.282157
ACCTATTCACTCAAGGTGCCC
59.718
52.381
0.00
0.00
42.08
5.36
612
625
2.749621
CAACCTATTCACTCAAGGTGCC
59.250
50.000
0.00
0.00
42.86
5.01
615
628
5.568620
AAGACAACCTATTCACTCAAGGT
57.431
39.130
0.00
0.00
45.62
3.50
616
629
7.979444
TTAAAGACAACCTATTCACTCAAGG
57.021
36.000
0.00
0.00
36.42
3.61
617
630
9.884465
CTTTTAAAGACAACCTATTCACTCAAG
57.116
33.333
0.00
0.00
0.00
3.02
618
631
9.621629
TCTTTTAAAGACAACCTATTCACTCAA
57.378
29.630
2.94
0.00
31.20
3.02
638
703
3.623060
GCTCTCATCGTGCCAATCTTTTA
59.377
43.478
0.00
0.00
0.00
1.52
642
707
0.529337
CGCTCTCATCGTGCCAATCT
60.529
55.000
0.00
0.00
0.00
2.40
651
716
1.543941
GACCGCAATCGCTCTCATCG
61.544
60.000
0.00
0.00
35.30
3.84
654
719
1.139734
GAGACCGCAATCGCTCTCA
59.860
57.895
5.46
0.00
43.41
3.27
702
768
0.527817
CTGTCGATCGTAAGCCACCC
60.528
60.000
15.94
0.00
37.18
4.61
716
782
2.410785
TATCGGCCGTATTTCTGTCG
57.589
50.000
27.15
0.00
0.00
4.35
719
785
5.862924
AAATCATATCGGCCGTATTTCTG
57.137
39.130
27.15
14.67
0.00
3.02
776
1713
3.980646
TTCAACGGAAAGACAACATGG
57.019
42.857
0.00
0.00
0.00
3.66
791
1728
3.956848
AGGGGGTCTACGTAGTATTCAAC
59.043
47.826
21.53
11.29
44.56
3.18
796
1733
3.051581
TCAGAGGGGGTCTACGTAGTAT
58.948
50.000
21.53
3.51
44.56
2.12
823
1760
8.103935
AGGAGGAGATTGTCTAAAAGTAAAAGG
58.896
37.037
0.00
0.00
0.00
3.11
843
1780
5.139727
TCGGGAATTACGTAATTAGGAGGA
58.860
41.667
28.60
19.11
36.13
3.71
941
1878
1.134068
GCTAGGGTTTTAGCTGAGGGG
60.134
57.143
0.00
0.00
42.18
4.79
947
1884
0.540454
GTCGGGCTAGGGTTTTAGCT
59.460
55.000
5.17
0.00
44.32
3.32
949
1886
0.808847
GCGTCGGGCTAGGGTTTTAG
60.809
60.000
0.00
0.00
39.11
1.85
970
1907
1.079503
GTTCTAGAAGGTTGCTGCGG
58.920
55.000
5.12
0.00
0.00
5.69
1101
2038
3.765257
ATCCAGGAGCCGGAGAGGG
62.765
68.421
5.05
0.00
41.48
4.30
1304
2241
2.163211
AGACTACTAAGGAACGCGGAAC
59.837
50.000
12.47
0.00
0.00
3.62
1314
2251
6.423302
TCGTCGCTATCTTTAGACTACTAAGG
59.577
42.308
0.00
0.00
39.36
2.69
1361
2298
5.331013
GCGACGCACAATTAAAATGATGATG
60.331
40.000
16.42
0.00
0.00
3.07
1429
2366
1.312815
ACCAGACTGAAACTGCAAGC
58.687
50.000
3.32
0.00
37.60
4.01
1452
2389
3.548745
ATAACAGCAGCATCAGCAGTA
57.451
42.857
0.00
0.00
45.49
2.74
1654
2600
8.121305
ACAGATTTTGATAACCTTGCATACAA
57.879
30.769
0.00
0.00
0.00
2.41
1702
2649
5.898397
TCTCAGGATTTCATCAGTCTCTCAT
59.102
40.000
0.00
0.00
0.00
2.90
1704
2651
5.850557
TCTCAGGATTTCATCAGTCTCTC
57.149
43.478
0.00
0.00
0.00
3.20
1706
2653
4.803088
CGTTCTCAGGATTTCATCAGTCTC
59.197
45.833
0.00
0.00
0.00
3.36
1709
2656
4.543590
ACGTTCTCAGGATTTCATCAGT
57.456
40.909
0.00
0.00
0.00
3.41
1711
2658
4.466370
ACCTACGTTCTCAGGATTTCATCA
59.534
41.667
9.10
0.00
35.76
3.07
1720
2667
6.449698
TGTTAAAACTACCTACGTTCTCAGG
58.550
40.000
0.00
0.00
37.97
3.86
1729
2676
9.485206
TTTCATCAGTCTGTTAAAACTACCTAC
57.515
33.333
0.00
0.00
0.00
3.18
1874
2821
9.620259
ATTACTTCTATTCTCAGGATTTCAACC
57.380
33.333
0.00
0.00
0.00
3.77
1980
4544
5.761818
AGCACAATACTTTTAAAATGCGC
57.238
34.783
13.44
0.00
36.93
6.09
2024
4588
8.437575
AGAAAGAATAAAGAACAGTGGGTTAGA
58.562
33.333
0.00
0.00
40.63
2.10
2134
4708
9.554724
GTTTTTGAATCTATATGAAGCACGAAA
57.445
29.630
0.00
0.00
0.00
3.46
2138
4712
9.846248
ACAAGTTTTTGAATCTATATGAAGCAC
57.154
29.630
0.00
0.00
37.73
4.40
2271
4871
6.316140
CCGAACCAAGATGAATGAATGTAAGA
59.684
38.462
0.00
0.00
0.00
2.10
2283
4896
1.377202
GCCTGCCGAACCAAGATGA
60.377
57.895
0.00
0.00
0.00
2.92
2294
4907
1.892819
TTCCTCTTCTCAGCCTGCCG
61.893
60.000
0.00
0.00
0.00
5.69
2544
5210
0.758123
AAGGGTTGTGGCATTGTTGG
59.242
50.000
0.00
0.00
0.00
3.77
2566
5232
1.265905
GGTACAGCCAAAGTTTCACCG
59.734
52.381
0.00
0.00
37.17
4.94
2592
5262
2.673775
TTTTGGGATGGCTGTTGAGA
57.326
45.000
0.00
0.00
0.00
3.27
2775
5456
4.084287
AGTTCCAATACTGACTCCGTACA
58.916
43.478
0.00
0.00
0.00
2.90
2800
5481
8.043113
TGAGCAGTAGATCAATAACAATCACTT
58.957
33.333
0.00
0.00
37.20
3.16
2872
5553
4.098914
ACAACATAAACTGCTCCTCCAA
57.901
40.909
0.00
0.00
0.00
3.53
2877
5558
5.572896
GCAACATAACAACATAAACTGCTCC
59.427
40.000
0.00
0.00
0.00
4.70
2894
5575
9.109393
GACTTTTATCCACTATTCTGCAACATA
57.891
33.333
0.00
0.00
0.00
2.29
2895
5576
7.611467
TGACTTTTATCCACTATTCTGCAACAT
59.389
33.333
0.00
0.00
0.00
2.71
2896
5577
6.939730
TGACTTTTATCCACTATTCTGCAACA
59.060
34.615
0.00
0.00
0.00
3.33
2908
5589
5.057149
ACTGTGACTGTGACTTTTATCCAC
58.943
41.667
0.00
0.00
0.00
4.02
2911
5592
8.082852
TCTAGAACTGTGACTGTGACTTTTATC
58.917
37.037
0.00
0.00
0.00
1.75
2917
5598
4.720046
TCTCTAGAACTGTGACTGTGACT
58.280
43.478
0.00
2.38
0.00
3.41
2918
5599
5.440234
TTCTCTAGAACTGTGACTGTGAC
57.560
43.478
0.00
0.00
0.00
3.67
2919
5600
4.022762
GCTTCTCTAGAACTGTGACTGTGA
60.023
45.833
0.00
0.00
0.00
3.58
2920
5601
4.233789
GCTTCTCTAGAACTGTGACTGTG
58.766
47.826
0.00
0.00
0.00
3.66
2921
5602
3.891977
TGCTTCTCTAGAACTGTGACTGT
59.108
43.478
0.00
0.00
0.00
3.55
2922
5603
4.511617
TGCTTCTCTAGAACTGTGACTG
57.488
45.455
0.00
0.00
0.00
3.51
2923
5604
5.016173
AGATGCTTCTCTAGAACTGTGACT
58.984
41.667
0.00
0.00
0.00
3.41
2949
5630
7.288810
TGAAAGAACAACCTGCATCTAATTT
57.711
32.000
0.00
0.00
0.00
1.82
2962
5643
4.936891
ACTGGAAGCAATGAAAGAACAAC
58.063
39.130
0.00
0.00
37.60
3.32
2971
5652
0.401356
TGGCAGACTGGAAGCAATGA
59.599
50.000
4.26
0.00
37.60
2.57
2975
5656
0.622136
ATCATGGCAGACTGGAAGCA
59.378
50.000
4.26
0.00
37.60
3.91
2984
5665
4.141733
TGTCCGATAAAAGATCATGGCAGA
60.142
41.667
0.00
0.00
0.00
4.26
2987
5668
4.999950
AGATGTCCGATAAAAGATCATGGC
59.000
41.667
0.00
0.00
0.00
4.40
2992
5673
6.982852
TGGAGTAGATGTCCGATAAAAGATC
58.017
40.000
0.00
0.00
36.82
2.75
2993
5674
6.517529
GCTGGAGTAGATGTCCGATAAAAGAT
60.518
42.308
0.00
0.00
36.82
2.40
2994
5675
5.221263
GCTGGAGTAGATGTCCGATAAAAGA
60.221
44.000
0.00
0.00
36.82
2.52
2995
5676
4.985409
GCTGGAGTAGATGTCCGATAAAAG
59.015
45.833
0.00
0.00
36.82
2.27
2997
5678
3.321111
GGCTGGAGTAGATGTCCGATAAA
59.679
47.826
0.00
0.00
36.82
1.40
2998
5679
2.891580
GGCTGGAGTAGATGTCCGATAA
59.108
50.000
0.00
0.00
36.82
1.75
3000
5681
1.333177
GGCTGGAGTAGATGTCCGAT
58.667
55.000
0.00
0.00
36.82
4.18
3003
5693
0.755686
CAGGGCTGGAGTAGATGTCC
59.244
60.000
0.00
0.00
34.31
4.02
3009
5699
0.463620
GAAGAGCAGGGCTGGAGTAG
59.536
60.000
0.00
0.00
39.88
2.57
3011
5701
2.297129
GGAAGAGCAGGGCTGGAGT
61.297
63.158
0.00
0.00
39.88
3.85
3017
5707
1.153005
CCATCAGGAAGAGCAGGGC
60.153
63.158
0.00
0.00
36.89
5.19
3025
5715
3.851955
GCATGGGCCATCAGGAAG
58.148
61.111
18.16
5.38
36.89
3.46
3039
5729
3.415087
GCTCAGGACAGGGGGCAT
61.415
66.667
0.00
0.00
0.00
4.40
3041
5731
4.416738
GTGCTCAGGACAGGGGGC
62.417
72.222
0.00
0.00
0.00
5.80
3042
5732
2.608988
AGTGCTCAGGACAGGGGG
60.609
66.667
0.00
0.00
0.00
5.40
3043
5733
1.611851
AGAGTGCTCAGGACAGGGG
60.612
63.158
0.00
0.00
0.00
4.79
3054
5744
1.280421
GAGAAATGGGGTCAGAGTGCT
59.720
52.381
0.00
0.00
0.00
4.40
3132
5823
1.296392
CTGCAACGGACAGGGATCA
59.704
57.895
0.00
0.00
0.00
2.92
3142
5833
0.879090
GAGGTTAAACCCTGCAACGG
59.121
55.000
0.00
0.00
39.75
4.44
3143
5834
0.879090
GGAGGTTAAACCCTGCAACG
59.121
55.000
0.00
0.00
42.17
4.10
3154
5845
0.615331
CCTGCAGCAGAGGAGGTTAA
59.385
55.000
24.90
0.00
41.71
2.01
3155
5846
0.252239
TCCTGCAGCAGAGGAGGTTA
60.252
55.000
24.90
0.00
46.21
2.85
3156
5847
1.130054
TTCCTGCAGCAGAGGAGGTT
61.130
55.000
24.90
0.00
46.21
3.50
3413
6104
4.093743
TCATGTAGCTCCAGAACAGGTAA
58.906
43.478
0.00
0.00
0.00
2.85
3414
6105
3.701542
CTCATGTAGCTCCAGAACAGGTA
59.298
47.826
0.00
0.00
0.00
3.08
3415
6106
2.499289
CTCATGTAGCTCCAGAACAGGT
59.501
50.000
0.00
0.00
0.00
4.00
3416
6107
2.499289
ACTCATGTAGCTCCAGAACAGG
59.501
50.000
0.00
0.00
0.00
4.00
3417
6108
3.883830
ACTCATGTAGCTCCAGAACAG
57.116
47.619
0.00
0.00
0.00
3.16
3418
6109
3.866066
GCAACTCATGTAGCTCCAGAACA
60.866
47.826
0.00
0.00
0.00
3.18
3419
6110
2.675348
GCAACTCATGTAGCTCCAGAAC
59.325
50.000
0.00
0.00
0.00
3.01
3420
6111
2.302733
TGCAACTCATGTAGCTCCAGAA
59.697
45.455
0.00
0.00
0.00
3.02
3421
6112
1.901833
TGCAACTCATGTAGCTCCAGA
59.098
47.619
0.00
0.00
0.00
3.86
3422
6113
2.391616
TGCAACTCATGTAGCTCCAG
57.608
50.000
0.00
0.00
0.00
3.86
3423
6114
2.616256
CCTTGCAACTCATGTAGCTCCA
60.616
50.000
0.00
0.00
0.00
3.86
3424
6115
2.012673
CCTTGCAACTCATGTAGCTCC
58.987
52.381
0.00
0.00
0.00
4.70
3425
6116
2.417933
CACCTTGCAACTCATGTAGCTC
59.582
50.000
0.00
0.00
0.00
4.09
3426
6117
2.038952
TCACCTTGCAACTCATGTAGCT
59.961
45.455
0.00
0.00
0.00
3.32
3427
6118
2.417933
CTCACCTTGCAACTCATGTAGC
59.582
50.000
0.00
0.00
0.00
3.58
3428
6119
3.668447
ACTCACCTTGCAACTCATGTAG
58.332
45.455
0.00
0.00
0.00
2.74
3429
6120
3.557054
GGACTCACCTTGCAACTCATGTA
60.557
47.826
0.00
0.00
35.41
2.29
3430
6121
2.498167
GACTCACCTTGCAACTCATGT
58.502
47.619
0.00
0.00
0.00
3.21
3431
6122
1.808945
GGACTCACCTTGCAACTCATG
59.191
52.381
0.00
0.00
35.41
3.07
3432
6123
1.421268
TGGACTCACCTTGCAACTCAT
59.579
47.619
0.00
0.00
39.86
2.90
3433
6124
0.836606
TGGACTCACCTTGCAACTCA
59.163
50.000
0.00
0.00
39.86
3.41
3434
6125
2.191128
ATGGACTCACCTTGCAACTC
57.809
50.000
0.00
0.00
39.86
3.01
3435
6126
2.664402
AATGGACTCACCTTGCAACT
57.336
45.000
0.00
0.00
39.86
3.16
3436
6127
2.622942
TGAAATGGACTCACCTTGCAAC
59.377
45.455
0.00
0.00
39.86
4.17
3437
6128
2.942804
TGAAATGGACTCACCTTGCAA
58.057
42.857
0.00
0.00
39.86
4.08
3438
6129
2.655090
TGAAATGGACTCACCTTGCA
57.345
45.000
0.00
0.00
39.86
4.08
3439
6130
2.352127
GCTTGAAATGGACTCACCTTGC
60.352
50.000
0.00
0.00
39.86
4.01
3440
6131
3.057736
CAGCTTGAAATGGACTCACCTTG
60.058
47.826
0.00
0.00
39.86
3.61
3441
6132
3.152341
CAGCTTGAAATGGACTCACCTT
58.848
45.455
0.00
0.00
39.86
3.50
3442
6133
2.107204
ACAGCTTGAAATGGACTCACCT
59.893
45.455
0.00
0.00
39.86
4.00
3443
6134
2.485814
GACAGCTTGAAATGGACTCACC
59.514
50.000
0.00
0.00
39.54
4.02
3444
6135
3.820777
GACAGCTTGAAATGGACTCAC
57.179
47.619
0.00
0.00
0.00
3.51
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.