>input_sequence_50748
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----------------ATGGCGTTCCTCCGAGCCCTCCGGCGAGCCCTCCCGCCGCTCTACTCGCCGGCGGCGCCTCTTT
CCCGGCGCGCACCAGGTCCTCCTCCGCTCCCTTCCCGCCCTCTCCGGCTCCTGGATCCGATCGGGTTCCGGCCGTTCTCC
GCCGCGGTCGCCACCGCCACCGCCGTCGCGCGGGTGCCGGAAATGGGGGCCAGCCTCTTCAGAGGGCTCACGGAGACCAG
GTTCCCCAAGCGGCGCCCGGGGTTCGTGTCCCGGCGCAAGAGGGCCAGCCTGCGACCCAAAGGTACGGGTGATCTCTGCC
GTTCCGCGTTCCTTAGTAGTCTAAAGATAGCGACGATCTGCACAATTCGTTTTGGATCATCATCATTTTAATTGTGCGTC
GCTGCTGTGCCGATTTATGCGATTCATTCGAACTGCCTGCGCCGCGCTTGCAGTTTCAGTCTGGTTAATACTGCTGATGC
TGCTGTTATTGGTTGGCAGGTCCGCACTACTGGGTGAGGTGCACGCCGGGGGAGCCTATCCCTTCGAGCCAGCCGAATAA
GGGCAGCGTGCAGGGGAGGAAGGAGAAGAAGCGGATCAAGCAGCGCAAGGACTTCATCATGGTCTGCA-TTTGTTCAGTT
CCCTGCAATGCTTGTTTTAATTGTGTGA--------TGGTTGTATGCAAGGTTATCAAAATCTGTATGTGTCT-CTGTAG
TGGAAAAAATGAGAGACTGATGAAATCCTGAGAACGTAGGTAGTTTTAACAGACTGATGAAATCCTGAGAACATAGGTAG
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNGGTTGAAATCCTGAGAATAGAAGTAATTTTTTCATGCTACTGAGCAGTGCTAAATATCAT
GTTAG-AATTGGAACTAGCTAATCATAGTT--------------------------------------------------
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--------------------TAGACGAG--------------------------TAGTCGAGTGCGCATTTTAAAAGTAT
TGTGCTAATACAAACACCTACATTTTTTCTAACCCACTGTTCTTTATTCTTTCTTGC-TTTTTTC---CTTTTTATGTTC
TTCTCATGGGCTTGAAGCTATAAGTTTGAAGTGCGTCAATACT---TACTA---TCATGCAGCTTACTTTCGTGCTTCAT
---------------------ATAGATTCAAAAACTTGTCTTGTTATAATGTAGTTCTATACCAAACTTTTGTTATGCTG
TTCACTTATGCTCTGTCCATATGTCTAAT-----AATTACCCACACCTGAATTTTATATCTATAATTATTTCT-------
------TACATTCATTCATCTTGGTTCGGCAGGCTGAGAAGAGGAAGCGCAAAGCACAGTATTCTGTTGCTGTGAAGAGG
AAGGAGGCAGAACGGACAGAAAGAAAGATGGCTGCAGTGGCAAGAGACCGGGCATGGGTGGAAAGGTTGGCAGAGCTAAA
GCAGATAGAGGCAGAAAAGAAAGCTGCAATGGCTTGA-------------------------------------------
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>chr1A_1_TraesCS1A01G068000
TGTGCTTCTCGAAAAAGGAAAAAACACAACTTGTGCTTCTATGAGATGCACAGATACACTTTCTGAAAAGCGAAAAGTGC
GGTTGTGTTTCCAAAAGATTGAAAAA-GCACAACTCTGCTTCTAGGTTTTGTTTTTTTTTCAGTTTTGGTTTCCCCCCTT
TTTGTCTTTTTATTTTTTGTTTTTATTTCGGTTTCTGACTTTTTTGATTCCTTTTTTTTTGTA----------AAAAAAA
CTTCATCGAAACCTATTACCATGGGATCTAGATTTAAAGTCTCGATGCGCGAAATTCAACGGCTCGTGATTTGGACACAC
AGTTCAAGAGATAATTT-TTTTGAAAAAATAAATCTATGAAAAAAGGAAAAGCTTCGAGGTTACGACAATTGGCATGCAC
GCAGTACGTCACTTGTTCCCAGCAGAGAATGTAAGAGGGACTTTTGCAAGGGGTATCCTTAATCAGTGACTTTGGTGCTT
TGCTGTCTGGAGCCTGCATATTGTTTAGTTTAGATGTGCCCGTTGCACTGTTCAGCTCGATTGACCTTCTATTTCGAGTT
GTTCTATGGCTAGCCCGATTTCTCCAACCCTCCGAACCAATGATAATCCATCAAGACTGTGAGGGGCACCT---------
-------------------------------------------TGAGTGAATAGGTTGTCTTTAAAAGATTGGCACGATG
AGAGCGATTGCGGTCTCCCTTTTTCTTACC-TTTTTAAATCTCCGGCGGGTGGCTTACGATCGACAGAAATACGGCCGAT
ATGATTTTTGGCGTTTTTTT------------------------------------------------------------
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-----------TTTTTTGCTGGTCGTTTTGTGCCATGTTGTCTTTCCGTTGAATACTACGTAGACCCCCTCTGATTACGC
CTTTTACTTTTAGACAATCTCCTCCTAATTACGTAATTCCCGAAGGGCGCCTTCAACTATGCTACACCAGCTGGGCTCTC
TCAGCGCTGGACAGCGCACGCCGCGCAGCTCGCCTTCCCCCTCAGCTAAAACCCTAGCCCGACGCCCCGCAGCAACCTTC
TAGAACCTTCTCCACGATGGCGTTCCTCCGAGCCCTCCGGCGAGCCCTCCCGCCGCTCTACTCGCCGGCGGCGCCTCTTT
CCCGGCGCGCACCAGGTCCTCCTCCGCTCCCTTCCCGCCCTCTCCGGCTCCTGGATCCGATCGGGTTCCGGCCGTTCTCC
GCCGCGGTCGCCACCGCCACCGCCGTCGCGCGGGTGCCGGAAATGGGGGCCAGCCTCTTCAGAGGGCTCACGGAGACCAG
GTTCCCCAAGCGGCGCCCGGGGTTCGTGTCCCGGCGCAAGAGGGCCAGCCTGCGACCCAAAGGTACGGGTGATCTCTGCC
GTTCCGCGTTCCTTAGTAGTCTAAAGATAGCGACGATCTGCACAATTCGTTTTGGATCATCATCATTTTAATTGTGCGTC
GCTGCTGTGCCGATTTATGCGATTCATTCGAACTGCCTGCGCCGCGCTTGCAGTTTCAGTCTGGTTAATACTGCTGATGC
TGCTGTTATTGGTTGGCAGGTCCGCACTACTGGGTGAGGTGCACGCCGGGGGAGCCTATCCCTTCGAGCCAGCCGAATAA
GGGCAGCGTGCAGGGGAGGAAGGAGAAGAAGCGGATCAAGCAGCGCAAGGACTTCATCATGGTCTGCA-TTTGTTCAGTT
CCCTGCAATGCTTGTTTTAATTGTGTGA--------TGGTTGTATGCAAGGTTATCAAAATCTGTATGTGTCT-CTGTAG
TGGAAAAAATGAGAGACTGATGAAATCCTGAGAACGTAGGTAGTTTTAACAGACTGATGAAATCCTGAGAACATAGGTAG
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNGGTTGAAATCCTGAGAATAGAAGTAATTTTTTCATGCTACTGAGCAGTGCTAAATATCAT
GTTAG-AATTGGAACTAGCTAATCATAGTT--------------------------------------------------
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--------------------TAGACGAG--------------------------TAGTCGAGTGCGCATTTTAAAAGTAT
TGTGCTAATACAAACACCTACATTTTTTCTAACCCACTGTTCTTTATTCTTTCTTGC-TTTTTTC---CTTTTTATGTTC
TTCTCATGGGCTTGAAGCTATAAGTTTGAAGTGCGTCAATACT---TACTA---TCATGCAGCTTACTTTCGTGCTTCAT
---------------------ATAGATTCAAAAACTTGTCTTGTTATAATGTAGTTCTATACCAAACTTTTGTTATGCTG
TTCACTTATGCTCTGTCCATATGTCTAAT-----AATTACCCACACCTGAATTTTATATCTATAATTATTTCT-------
------TACATTCATTCATCTTGGTTCGGCAGGCTGAGAAGAGGAAGCGCAAAGCACAGTATTCTGTTGCTGTGAAGAGG
AAGGAGGCAGAACGGACAGAAAGAAAGATGGCTGCAGTGGCAAGAGACCGGGCATGGGTGGAAAGGTTGGCAGAGCTAAA
GCAGATAGAGGCAGAAAAGAAAGCTGCAATGGCTTGAGGAGCTCCTCTGGAAAC-GGCAAGGCGTCTAACTCGTTTCTGC
TGCTCCGTTTCGTCTCTTTTT------------------------------TT----------------------CTGTG
CTACAGTTGCCAACAATGCCACAACCCTTCTCGGTGAAACT----TTGGCTGTACCCCTCCTC-TCAACAGCCATCCCA-
------AAATGGCAGATTTTGTTTTGATATGATGTTCTCA---AATTTGTCTTAAATGTAATGAAATATTGATTCTGTGT
TGTATTTAGAATAAACCAAATGATCTTAGTTGTGTGCTGGTAATCAGAAATGACAAATGAGTGCAACCTTCTGTCACATT
TATGGCAGAGAAGTTTGTACGGAGTCAGTATTGGAACTACAAGTGATTGTTATTGATCTACTGCTCATGTTCCTTGCCTC
CCTTTGCATTCCACCCCATCAGTTCTGATGTCTTGGAGGAGCAGTTTATGTTGTTATGTTGCAGAATAGTGGATAAAAGT
CACAGTCACAGTTCTAGAGAAGCATCTATAAATTAGATGCAGGTTGTTCTTTCATTGCTTCCAGTCTGCCATGATCTTTT
A---------TCGGACATCTACTCCAGCCCTGCTCTTCCTGATGGCCCATGCCCCCTGTCCTGAGCACTCTGACCCCATT
TCTCCAGATTTAGTTGCCTGGCAATTGTGG-TTCAAGCATGCAAATTGCAGTGGATGCACAATGATCCCTGTCCGTTGCA
GGGTTTAACCTCCTCTGCTGCAGGAATGCTCCTTGCAGAAACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNTTACCTGTTCTGGAGCTACATGAGTTGCAAGGTGAGTCCATTTCAAGCTGTC
>chr1D_1
TGTGTTTCCCAAAAAAGAGAAAAGCACAGCTTATGCTTCTATGAGATGCACAGATACACTTTCTAAAGAGTGAAAAGTAC
AGTTGCATTTCCAAAAAATTGAAAAAAGCACAACTTTGCTTCTGGGTTTTGATTTTTTTTCAGTTTTGA-TTTCCCCCTT
TTTGTCTCTTTGGTTTTTGTTTTTATTTCAGTTTCTGTTTTTTCTGATTCCTGGTTTTTTCTATTTTTTTCGTAAAAAAA
CTTCATCGAAACCTGTTAAGACGGGATCTAGTTTCAAAGTCTCGATGCGAGAAATTCAACTGCTCATGATTTGGACACAT
GATTCAAGAGATAAAATGTTTTGAAAAAAAAAATCTAGGAAAAAAGGGAAAGCTTCGAGGTTACGATAATTGACATGCAT
GTGGTGCACCACTTGTCACCACCAGAGAATGTAAGAGGGACCTTTGCAAGGGGCCCCTTTAATCAGCAATTTCGGTGCTT
TGTTGTCTGGAGCCTGCATATTGTTTAGTTTAGATGTGCCCTTTGCACTATTCAACTCGGTTGGCCTCCTATTTCGAGTT
GTTCTATGGCTGGCCAGGTTTCTCCAACCCTTTAGACGGATGATAAACCATTGCAAGACTGCATTGCGTGGGGTGATACT
TCAACCGATATTTTTTTAGCAGTTACCATATCGTTTTTAGAGATGAGTGAATAGGTTGTCTTAAAA-GATTGGCATGACG
AGGGCGATTGCGGTGTCCCTTTTTCTTACCTTTTTTAAATCTCCGGCTGGTGGCTTACGATTGAAAGAAATACGGCCGAG
ATGATTTTTGACGTATTTCATTTTTTGCTGGTCCTTTTTGCAAGGAATATCGAGCTTTATTTAAATAAAAGCATTCGGTG
AGCAATCAACCAATAGGCTGCATACTAAGAAGCCAGGTGTCTCATCAAGCCAACTTTCGACTACAACTATTGTGCAAGCA
CGCTTAGCACAAAAGTTAGCCGGATAATTGGCTGATCTGTTTACATATTCAGTGGAAAAAAAATTGAAAACTATTGGCAA
GCTCGTCTATTTCTTGAAAGGTAGGTGCCACAATCGAACAGGAATTATGGTGACTTGTCGAGAGATTAACTATCTCCAGG
TTGCCGGTCTCCATCTCCACTTCTTCATAGCCTCGAAGTTTAGCAACACGGACGCCCTCACGAATGGCGAGTGCCTCGGT
GATGATTAGATCAGAGACCCCAGGAAGTGGCTTATACCGTGCTCCAAACATTAATGCATCTGAGTTGATTTTCATTCTAT
TATTCTCTGGGGGTCTCCAGCCATGCCCCGACATAAGTTTTACATACTGTCGGTGAACATCTAAAAGAGCAAGGGCTTCT
CTCGTAAGTCTCACGGATGTAGCCGGATCGATCTTTTCCTGGTCATGGGTAATGCTATTTCTCGAATGCCAGATAGACCA
CATAACGGAAACAATGATCGCCCTTTCTCTATCCGTGAATTGCTGGTCACATAAAATATCCTTGGACCAAGTAGCAGGAT
GTAGTCTGGGCAGCTGAATGTCAAACATCGGCCTTGCTTCTGCCCAGAATCTCTTGGCATGGGAGAGGTGCATGAGGGCA
TGCTGTATATCCTCATCCATGGCCAAGCACACTCTGCATCGACTCATTTCTTTGATGTGGCGCCGCTTGAGGGTCATCTC
ATCAGGAATTATTTTTTGCTGGTCGTTTTGTGTCATGTTGTCTTTCC-TTGACTACTACGTAGACCCCCTCTGATTACGT
CTTCAT-TTTTAGACGATCCCCTCCTGATTACGTAATTTCCAAAGGGCGCCTTCAACTATTCTACACCAGCTGGGCTCTC
TCAGCGCTGGAGAGCGCACGCCGCGCAGCTCGCCTTCTCCCTCCGTTAAAACCCTAGCCCGACGCCACGCAGCAATCTTC
TAGAACCTTCTCCACGATGGCGCTCCTCCGAGCCCTCCGGCGAGCACTCCCGCCGCTCTACTCGCCGGCGGCGCCTCTTT
CCCGGCGCGCACCAGGTCCTCCTGCGCTCCCTCCCCGTCCTCTCCGGCTCCTGGATCCGATCGGGTTCCGGCCGTTCTCC
GCCGCGGCCGCCACCGCCACCGCCGTCGCGCGGGCGCCGGAAATGGGTGCCAGCCTCTTCAGAGGGCTCACGGAGACCAG
GTTCCCCAAGCGGCGCCCGGGGTTCGTGTCCCGGCGCAAGAGGGCCAGCCTGCGACCCAAAGGCACGG-TGATCTGTGCC
ATTCCGCGTTTCTTAGTAGTCTAAAGACAGCGACGATCTGCACAATTCGTTTTGGATTATCATCATTTTAATTGCGGGTC
GCTGCTGTGCCGATTTATGCGATTCGTTCGAACTGC--GCGCCGCTCTTGCAGTTTCAGTCTGGTTAACACTGCTGATGC
TGCTGTTATTGTTTGGCAGGTCCGCACTACTGGGTGAAGTGCACGCCGGGGGAGCCTATCCCTTCGAGCCAGCCGAACAA
GGGCAGCGTGCAGGGGAGGAAGGAGAAGAAGCGGATCAAGCAGCGCAAGGACTTCATCATGGTGTGCA-TTTGTTCAGTT
CCCTGCAATGCTTGTTTTAATTGTGTGA--------TGGGTGTATGCAAGGTTATCAAAATCTGTATGTGTCTTCTGGAG
TGGAAAAAGTAACAGGCCGATGAAATTCTGAGAACATAGGTAGTTTTAACAGACTG----AATCCTGAGAACATAGGCAG
TTTTAACAGGGTGG------------------------------------------------------------------
-----------------------TGAAATCCTGA--ATAGAAGTAAATTTTTCATGCTACTGAGCAGTGCTAAATATCAT
ATTAG-AATTGGAACTAGCTAATCATAGTT--------------------------------------------------
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--------------------TAGACGAG--------------------------TAGTCGAGTAGGCATTTTAAAAGTAT
TGTGCTAATACAAACACCTACATTTTTACTAACCCACTGTTCTTCGTTCTTTCTTGC-TTTTTTC---CTTTTTATGTTC
TTCTCATGGGCTTGAAGCTATAAGTTTGAACTGCGTCAATACT---TAGTA---TCATGCAGCTTACCTTCATGCTTCAC
-----------------------AGATTCAAAAACTTGTCTTGTTATAATG-------ATACCAAACTTTTGTTATGCTG
TTCACTTATGCTCTGTCCATATGTCTAAT-----AATTACCCAGACCTGAATTTTATATTTATAATTATTCCT-------
------TACATTCATCCATCTTGGTTTGGCAGGCTGAGAAGAGGAAGCGCAAAGCACAGTATTCTGTTGCTGTGAAGAGG
AAGGAGGCAGAACGGACAGAAAGAAAGATGGCTGCAGTGGCAAGAGACCGGGCATGGGTGGAAAGGTTGGCAGAGCTAAA
GCAGATAGAGGCAGAAAAGAAAGCTGCAATGGCTTGAGGAGCTCCTCTGGAAAC-GGCAAGGCGTCTAACTCGTTTCTGC
TGCCCCGTTTCGTTCCTATTT------------------------------TTTTCCAGATAGCTTGAATATGTTCTGTG
CTACAGCTGTCAACAATGCCACAACCCTTCTGGGTGAACCT----TTGGCTGTACCCGTCCCC-TCAACAGCCATCCCA-
------AAGTGGCAGATTTTGTTTTGATATGATGTTCTCA---AATTTGTCTTCATTGTAATGAGATATTGGTTCTGTGT
TGTATTTAGAATAAACCAAATGATCTTAGTTGTGTGCTGGTAATCAGAAATGACAAATGAGTGCAACCTTCTGTCACATT
TATGGTAGAGAAGTTCGTACGGAGTCAGTATTGGAACTACTAGTGATTGTTATTGATCTACTGCTCATGTTCCTTGCCTC
CCTTTGCATTCCACCCCCTCAGTTCTGATGTCCTGGAAGAGCAGTTTATGTTGT---GTTGCAGAATATTGCATAAAT--
----GTCACAGTTCTAGAGAAGCATCTATGAATTAGATGCAGATCGTTCTTCCATAGCTTCCAGCCTTCCATTGCTTCCT
TGTTTCTTTGTCAGACATTTTCTCCATCCCTGCTATTCCAGGTGGCCCGTTT-TCCTGTCCTGGGCACTATGACCCTGTT
TCTGCAGATTTAGTTGCCTGGCAATTGTGCTTTCAAACATGCAAATTGCACTGGATGCACAACGATCCCTGTT-GTTGCT
GGGT---AACTCCCCTACTGGAAGAATGCTCCTTGCAGGAACAA------------------------------------
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>chr1B_805
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------------------------------------------------------------TAGACCCCCTTCGATTACGT
CTTTTACTTTTAGACAATCCCCTCCTGATTACGTAATCCCGGAAGGGCGCCTTCAACTATTCTACACCAGCTGGGCTCTC
TCAGCGCTGGAGAGCGCACGCCGCGCCGCTCGCCTTCTCCCTCCGGCTAAACCCTAGCCCGACGCCACGCAGCAACTTTC
TAGAACCTTCTCCACGATGGCGCTCCTCCGAGCCCTCCGGCGAGCCCTCCCGCCGCTCTACTCTCCGGCGGCGCCTCTTT
CCCGGCGCGCCCCAGGTCCTCCTCCGCTCCCTTCCCGTCCACTCCGGCTCCTGGATCCGATCGGGTTCCGGCCCTTCTCC
GCCGCGGCTGCCACCGCCACCGCCGTCGCGCGGGCGCCGGAAATGGGGGCCAGCCTCTTCAGAGGGCTCACGGAGACCAG
GTTCCCCAAGCGGCGGCCGGGATTCGTGTCCCGGCGCAAGAGGGCCAGCCTGCGACCCAAAGGTACGG-TGATCTCTGCC
ATTCGGCGTTTATTAGCAGTCTAAAGATGGCAACGATCTGCACAATTCGTTTTGGATTATCGCCATTTTAGTTGTGCGTC
GCTGCTGTGCCGATTTATGCGATTCATTCGAGCTGC--GCGCCGCTCTTGCAGTTTCAGTCTGGTTAACACTGCTGATGC
TGCTGTTATTGGTTGGCAGGTCCGCACTACTGGGTGAAGTGCACGCCGGGGGAGCCTATCCCTTCGAGCCAGCCGAATAA
GGGCAGTGTCCAGGGGAGGAAGGAGAAGAAGCGTATCAAGCAGCGCAAGGACTTTATCATGGTGTGCATTTTGTTCAGTT
CCCTGCAATGCTTGTTTTAATTGTGTGTTGGCCTGTTGGGTGTATGCAAGGTTATTAAAATCTATCTGTGTCTTG-GGAG
TGGAAAAAGTATCAGGCCGATGAAATTCTGAGAACATAGGTACTTTTAACAGGTGGATGAAATCGTGAGAACGTAG----
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------------------------------------------GTAATTTTTTCATGCTATCGAGTAGTCCTAAATACCAT
GTTTGTAA-CGGAACTAGCTAATCATAGTT--------------------------------------------------
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--------------------TAGGCGAG--------------------------TCT--------GCCTTTTAAAAGTAC
CGTGATAATACCAACACCTACATTTCTAGTAAGTCACCATTCTATATGTTTCCTTGGTTTTGCTTTAACTTATTGCGTTC
TTGTCATTGACTTGAAGCTGTTAGTTTCAACTGTTTCAGTACTCAATACTC---TCACGCACCTTACCTTCTTACTTTAT
---------------------AAAAAC----AAACCTGTCTTTTCATAATGTAGTTCTATGTGAAACTTTTGTTACGATG
TTCACTTATGCTCTGTCCATATGTCCAATTG----ATGACCCAGACCTGAATTCTCTATTTATGATTTTACTTACATTCA
TTTATCT--------------TGCTTTGGCAGGCTGAAAAGAGGAAGCGCAAAGCACAATATTCTGTTGCTGTGAAGAGA
AAGGAGGCAGAACGGACAGAGAGAAAGATGGCTGCCGTGGCAAGAGACCGGGCATGGGTGGAAAGGTTGGCAGAGTTGAA
ACAGATAGAGGCAGAGAAGAAAGCCACGATGGCTTAAGGAGCTCCTCTGGAAAATGGCAAGGCGTCTAACTTGTTTCTGC
TGCTCCGTTTCGTCGCTATTTTTTCTTTCCTTTTCAGATAGCCTGAATATGTT----------------------CTGTG
CAACAATTGTCAACAATGTCTCAACCCTTCTGTGTGGAACT----CTGGCTGTACCCCTTTCCTTCAACAGCAATCCCA-
------AAATTGCTGATTTTGTTTTAATACGGTGTTCCCA---AATTTGTCTTCATTGTAATGAAACATCTGCTCTATGA
TGCATGTAGAATAAACCAAATGATCGTAGTTGTGTGCTGGTAATCAGAAATGACAAATGTGTGCAACCTTCTGTCACATT
TGTGGCACCGAAGTTCGTTTGGAATCGGTATTGGAACTACTAATGTTTGTTGTTGATCTACTGCTCATCTTCCTTACCTC
CCTTTGCATTCAACCCCCTCAGTTCTGATGTCCTGGAAGAGCAGTTTATGTTGT---GTTGCAGAATATTGCATAAAT--
----GTCACAGTTCTAGAGAAGCATCTATGAATTAGATGCAGATTGTTCTTCCATAGCTTCCAGCCTTCCTATGCTTCCA
TGTTTTTTTGTCAG------TCTCCATCCCTGCTATTCCAGGTGGCCTGTTT-CCCTGTCCTGGGCACTCTGACCCCATT
CCTGCAGATTTAGTTGCCTGGCAATTGCGCTTTCAAACATGCAACTTGCAGTGGATGAG---CGATCCCTGTT-GTTGCA
GGGT---ACCTCCCCTACTGGAAGAATGCTCCTTGCAGGAACAA------------------------------------
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>chr1A_999
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--------------CGATGGTGCTCCTCCGAGCCCTCCGGCGAGCCCTCCCGCCGCTCTACTTGCCGGAAGCGCCTCTTT
CCCGGCGCGCCCCAGGTCCTCCTGCGCTCCCTGCCCGTCCTCTCCGGCTCCTGGATCCGATCGGGTTCCAGCCGTTCTCC
GCCGCCGTGGCCACCGCCACTGCTGTCGCACAGGCGCCGGAAATGGGCGCCAGCCTCTTCAGAGGGCTCATGGAGACCAG
GTTCCCCAAGCGGCGTCCAGGATTCGTGTCCCGGCGCAAGAGGGCCAGCCTGCGACCCAAAGGTATGG-TGATCCCTGCC
ATTCCATTTTGTAGCTGTCACGATT-----CAAAAATCTGCATGGTTAA-TTTGGATTATCACCATTTTAATTGTGCGTG
CCTGCTGTGCTGATTTGTGTGATTCATTCGAACTG--TGCGCCGCTCTTGCAGTTTCAGTATGGTTAACACTGCTGATGC
TGCTGTTATTGGTTGGCAGGTCCACACTACTGGGTGAAGTGCAAGCCGGGGGAGCCTATCCCTTCGAGCCAGCCGAATGA
GGGCAGCGTACAGGGGAGGAAGGAGAAGAAGCGGATCAAGCAGCGCAAGGACTTTATCATGGTGTGCATTTTGTTCAGTT
CCCTGCAATGCTTGTTTTGATTGTGTGA--------TGGGTTTATGCAAGGTTATCAAAATCTATCTGTGTCT-CTGGAG
TAGAAAAAGTAACAGGACGATGAAATTCTGAGAACAAAAGTAGTTTTAACAGGGGAATGAAATCCTGAGAACAAAA----
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------------------------------------------GTAGTTTTTTTATGCTACCGAGTAGTGCTAAATATCAT
GTTAG-AA-TGGAACTAGCTAATCATAGGAGTGAAATGCATGGTTAGTCCATAAACTGAAATTGAAAGCACACTTTAGGC
CACAAACTCAAAATCTGCATGAATTAGGCCATAAACTGAATGAAGAGCACATTTTAGGCCAGAAATCGCTTCGGGGTGAT
TAAACCTGCACACGTGGCTGCCAGCTCGGCTGTGGCTGGACCGTACCCGAGTCAGAGATTTCACAGGGGGCTATTTGCAA
AATGGCCACAACTGCAAAATTCCCTCTCGAGATCCCCAATTCTCTGGTCACAGGGTGGCGGCCGCGGCTCCAGAAAGAAA
ATAAATAAATTTCTGCACTTAAAGAAAGCAAAGAAACAAAAAAAAAACT-GTTTTTGCGATGGTTTCTGTACTAATTCAG
TTTGTGCACT-------------------AAAACATAGTGTATCTAAAGATTCAGTATCTAAACTAAAGAAGGTTTGTGG
AACAGCTGAACTTTTAAACTTAAACGTAGATCAACAGTAAATGTTCAGTCTTTTCAGTTCCTGTACTAATTCAGTTTGTG
CACTAAATTCATTG-TCTGCACTAAAACAGAGTATACGTAAAGGTCCAGTATCTGAACTAGAGAAGGTTTGTGGAACAGC
TGAATTTTTAAACTTAAACAGTCAGTCTTTTCAGTTCCTGTACTAATTCAGTTTGTGCACTAAAATTCA-TTTTTGCACT
AAAACAGAGTATATCTAAAGATTCAGTTTCTGAGCTATAGAAGATTTGTGGAACAACTGAATTTTTAAACTTAAACACAG
ATCAAAAGTAAAGGTTCAGTCTTTTCAGTTAAACAGAGATCAAATATACAATCCTTTCAGTTCAATAGAGATCAAATGTT
CAGTTTTGGCCAACATACTGATCACATGTACTCAAT--TATTGCCGTAAAACAAATTCATATCCAGTTCTTCTACATGAA
CAGAGCACATGTTCAGATCAACAGAAACAGGAACAAAACCCGAGGCATGCTTCAAAAATAAGCCTCAATACCATAATTTC
GCATCATTCCATTGTCATATACTCCCTCTGTTCCCTTTTATAAGACGTTTTACACATTTCAGACACACAAAACAGTTCAA
ACTGGACTGGCTAAAACGTCTTATAAAAAAGAATGGAGGGAGTACATGAACGCCACTACAGAGATTATGCAGTCGACATT
GATAATA-------------------------------------------------------------------------
-----------------------------CTCCCTCCGTTCATGGTGGCTATGGCAT-GAGGCAGAGAGAAGATGAGAAG
AGGGAGACGGAAGGGGGTTCGCTCCATCCGGTGCGGTAGGCGCGACTCTTTACTTTCGACAATTTTGCACATAGCCCACT
GTTAAAGCTATCTCTCACAGATGCGGTCCAGTCTTAGGTGAGCTTGCAGCCATGTATGTGTGCAGGATCAGGCCCGGCCA
AGCG-TTTTTTGGCCTGAAGTGTGCTCTTAATTCAGTTCATGGCCTAATCTGTGTAGATTTG------ATGGACTAAACT
GTGGTTTCAATTCGAGTTAATAGACGAG--------------------------TAGTCGAGTAGGTATTTTGAAAGCAT
TGTGCTAATACAAACACCTACATTTCTATTGACACTCTGTTCATTATTCATTCTTGCTTTTTTTC---CTTTTTGTGTTC
TTCTCATGGGCTTGAAGTTACAAGTTTGAAGTGCGTCAGTACT---TACTAGTCTCATGAAGCTTACCTTGATGGATGCT
TGATAG-----------------------AAAA-----------------------------------------------
---ACTTATGCTCTGTTCATATGTCTAATTAATCAATTACCCAGACCTGAATTCTATATTTATAATTATTGCT-------
------T--------------TGCTTGGGCAGGCTGAGAAGAGGAAGCGCAAAGCACAGTATTCTATTGCTGTGAAGAGG
AAGGAGGCAGAACGGACGGAAAGAAAGATGGCCGCCGTGGCAAGAGACCGGGCATGGGTGGAAAGGCTGGCAGAGCTAAA
ACAGATGGAGGCAGAAAAGAGAGCTGCAATGGCTTGAGGAGCTCCTCTCTCTGGAAACAAACG-----------------
-------------------------------------------------------------------------------G
CAACAGTTGTCAGCGATGCCATAGCCCTTGTGGGTGGAGCTCTGGCTGGCTGTACCCCTTCCC-TCAGCAGCAATCTTCT
AAAAATAAATTGCTGATTTTGTTTGTTTTAGTAGGGTGTTGTCAATTTGTCTTGATTGTAATGAAATATCGGTTTTATGT
TGTTTTTAGAATAAACCAAATGATGTTAGTTGTGTGCTGGTAATCAGAAATGACA-------------------------
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>chr1D_999
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--------------CGATGGCGCTCCTCCGAGCCCTCCGGCGAGCCCGCCCGCCGCTCTAC-TGCCGGAAGCGCCTCTTT
CCCGGCGCGCCCCAGGTCCTCCTGCGCTCCCTGCCCGTCCTCTCCGGCTCCTGGATCCGATCGGGTTCCGGCCGTTCTCC
GCCGCCGTGGCCACC------------------GCACCGGAAATGGGCGCCAGCCTCTTCAGAGGGTTCATGGAGACCAG
GTTCCCCAAGCGGCGTCCAGGATTCGTGTCCCGGCGCAAGAGGGCCAGCCTGCGACCCAAAGGTATGG-TGATCCCTGCC
ATTCCGTTTTGTAGCTGTCACGATT-----CAAAGATCTGCATGGTTAA-TTTGGATTATCACCATTTTAATAGTGCGTG
CCTGCTGTGCTGATTTGTGTGATTCATTCAAACTG--TGCGCCGCTCTTGCAGTTTCAGTCTGGTTAACACTGCTGATGC
TGCTGTTATTGGTTGGCAGGTCCACACTACTGGGTGAAGTGCATGCCGGGGGAGCCTATCCCTTCGAGCCAGCCGAATGA
GGGCAGCGTACAGGGGAGGAAGGAGAAGAAGCGGATCAAGCAGCGCAAGGACTTTATCATGGTTTGCATTTTGTTCAGTT
CCCTGCAATGCTTGTTTTGATTGTGTGA--------TGGGTTTATGCAAGGTTATCAAAATCTATCTGTGTCT-CTGGAG
TA---------ACAGGCCAATGAAATTTTGAGAACATAGGTAGTTTTAACAGGGGAATGAAATCCTGAGAACAAAA----
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------------------------------------------GTAGT---------------------------------
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>chr1B_999
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--------------CGATGGCGCTCCTCCGAGCCCTCCGGCGAGCCCTCCCGCCGCTCTACTCGCCGGCGGCGCCTCTTT
CCCGGCACGCCCCAGGTCCTCCTGCGCTCCCTCCCCGTCCTCTCCGGCTCCTGGATCCGATCGGCTTCCGGCCGTTCTCC
GCCGCCGCGGCCACCGCCACCGCCGTTGTGCGGGCACCGGAAATGGGCGCCAGCCTCTTCAGAGGGCTCACGGAGACCAG
GTTTCCCAAGCGGCGGCCAGGATTCGTGTCCCGGCGCAAGAGGGCCAGCCTGCGACCCAAAGGTGCGG-TGATCCCTGCC
ATTCCGTTTCATAGCTGTCACGATT-----CAAAGATCTGCATCGTTAA-TTTGGATTATCACCATTTTAATTGTGCGTG
CCTGCTGTGCTGATTTGTGTGATTCATTCGAACTG--TGCGCCGCTCTTGCAGTTTCAGTCTGGTTAACACTGCTGATGC
TGCTGTTATTGGTTGGCAGGTCCGCACTACTGGGTGAAGTGCAAGCCAGGGGAGCCTATCCCTTCGAGCCAGCCGAATGA
GGGCAGCGTACAGGGGAGGAAGGAGAAGAAGCGGATCAAGCAGCGCAAGGACTTTATCATGGTGTGCATTTTGTTCAGTT
-CCTGCAATGCTTGTTTTGATTGTGTGA--------TGGGTTTATGCAAGGTTATCAAAATCTATCTGTCTCT-CTGGAG
TA---------ACAGGCCAATGAAATTTTGAGAACATAGGTAGTTTTAACAGGGGAATGAAATCCTGAGAACAAAA----
--------------------------------------------------------------------------------
------------------------------------------GTAGTTTTTTCATGCTACGAGT--GTGCTAAATTTCAT
GTTAG-AA-CGGAACTACCTAATCATAGGAGTGAAATGCATGGTTAGTCCATAAAC--------------CACTTTAGGC
CTCAAACTCAAAATCTGCT-----------------------------------------AGAAACTGCTTTGGGGTGAT
TAAACCTGCACACATGGCTGCCAGCTCGACTGTGGCTGGACTATACCTGAGTCATAGATTTCACAGGGGCCTATTTGCAA
AATGGCCACACCTGCAAATTTCCCTTTCGAGATCCTCTATTCTTCTG-----GGGTGGCGGCCGCAGCTCCAGAAAGAAA
ATAAATAAATTTCTGCACTTAAAGAAAGCAAAGAAACAAAAAAAAAATCAGTTTTTGCAATGGTTTCTGTACTAATTCAG
TTTGTCCACTAAAATTCATTTTCTGCGCTAAAACAGAGTGTATCTAAAGATTCAGTATCTAGACTAAAGAGGGTTTGTGG
AGCAGCTGAACTTTTAAACTTAAATGTAGATGAACAGTAAATGTTCAGTCTTTTCAGTTCCTGTACTAATTCAGTTTGTG
CACTAAAATTCATTTTCTGCACTAAAACAGAGTATATGTAAAGGTCCAGTATCTGGT-----------------------
---------------------TCAGTCTTTTCAGTTCCTGTACTAATTCAGTTTGTGCACTAAAATTCATTTTCTGCTCT
AAAACATAGTATATCTAAAGATTCAGTTTTTGAACTATAGAAGGTTTGTGGAACAACTGAATTTTTAAACTTAAACAGAG
ATCAAAAGTAAAGGTTCAGCCTTTTCAGTTAAACAGAGATCAAATATACCATCTTTCAGTT--AATAGAGATCAAATGTT
CAGTTTTGGCTAACATACTGATCACATGTACCCAGTTATATTACCCTAAAACAAATTTACATTCGGTTCTTCTACATGAA
GAGATCACATGTTCAGATCAACACAAACAGGAACAAAACCCTAGGCATGCTTCAAAAATAAACCTCAATACCATAATTTC
GCATCATTCCATTGTCATATAC----------------------------------------------------------
---------------------------------------------ATGAACGCCACCACAGAGATGATGCAATCGATCAT
AGATGGCAAAAAACCCTACTGGTTGGAAGAAGCAGGGGTGGCAGAGAGAAGAGGAGAAGAAAAACACACCGTAGCTGGCG
TTGAGCCGCTGTCTGTTATTATCGATCTCCTTCCTGTGGTCACGGTGGCTATGGCATCGAGGCAGATAGAAGATGAGAAG
GGGGAGACGGAAGGGGTTCGCTCCAGCT----------------ACTCTTTACTTTCGACAATTTTGCACATAGCCCACT
GTCAAAGCTATCTCTCGCAGATGCGGTCCAGCCTTAGCCAGCC------------ATGTGCGCAGGATCAGGCCCGGCGA
AGCATTTTTTTGGCCTGAAGTGTGCTCTTAATTCAGTTGATGGCCTAATCTGTGTAGATTTTGAGTTTATGGACTAAACT
GTGTTTTCAATTTGAGTTAATGGACCAACCATGCATTTCACTCTAACCATAGTTTAGACGAGTAGGTATTTTAAAAGCAT
TTTGCTAATACAAACACCTACATTTCTATTAACAGTCTGTTCTTTATTCTTTCTTGTTTTTTTTC---CTTTTTGTG---
TTCTCATGGGCTTGAAGCTACAAGTTTGAAGTGCGTCAGGAT-------------------GCTTACCTTGATGGATGCT
TGAACAGTAAATGGATGCTTGATCGATTCAAAA-----------------------------------------------
---ACTTATGCTCTGTTCATATGTCTAATTAATCAATTACCCAGACCTGAATTCTATATTTATAATTATTGCG-------
------T--------------TGCTTGGGCAGGCTGAGAAGAGGAAGCGCAAAGCACAGTATTCTGTTGCTGTGAAGAGG
AAGGAGGCAGAACGGACGGAAAGAAAGATGGCCGCCGTGGCAAGAGACCGGGCATGGGTGGAGAGGCTGGCAGAGCTAAA
ACAGATGGAGGCAGAAAAGAGAGCTGCAATGGCTTGAGGAGCTCCTGTCTCTGGAGACAAACG-----------------
-------------------------------------------------------------------------------G
CAACAGTTGTCAGCGATGCCATAGCCCTTGTGGGTGGAGCTCTGGCTGGCTGTACCCCTTCCC-TCAGCAGCAATCTTCT
AAAAATAAATTGCTGATCTTGTTTGTTTTAGTAGGATGTTGTCAATTTGTCTTGATTGTAATGAAATATCGGTTTTC-GT
CGTGTTTAGAATAAACCAAATGATGTTAGTTGTGTGCTGGTAATCAGAAATGACA-------------------------
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---------------------------------------------------------------------------
>SNPs
----S---S-S------SS----S----S---S-------------------------------S--S--S-------S-
S----SS---------S------------------S-------S-------S----------------SS--S-------
-------S---SS----------------S-------SS----S--------SS------S-------------------
--------------S---SS-S---------S--S--------------S----------S----S-------------S
SS------------SS-------------S-------S---------S------------------S-----S------S
-SS--S-SS-------SS---S-------------------S-----------SSS-S--------SS-S--S-------
--S--------------------------------------S-------S----S----S---S---S------------
-----------S---S-S-------------SSSS--SS-------S----SSSS-SSS--SSSS--SSSS---------
--------------------------------------------------------------S---S--------S--S-
--S-----------S--------------------------------S-------------S--S--------------S
----------S---S---SS------------------------------------------------------------
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--------------------------------S--------------S----S--------------------------S
-------------------S------S---------------------------------S-------------------
-----------S-------------------------S-----S-S--------------------S-------------
----------------------S---------------------------------------------------------
-------------------------------------S------------------------------------------
----------------------------------S---------------------------------------------
--------------------------------------------------------------------S-----------
S---------S----------------------------------------------S----------------------
------------------------------------S--------S----------------------S-----------
-------------------------------------S------------------------------------------
---------------------------------------------------------------S----------------
---------------------------------------S-------------------------------------S--
--------S-S-S--S-S--------S--------S-----------------------------------------S--
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS-----------SS--------------------------------------------
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---------------------------------------------------------------SS---------------
---------------------------S----------------------------------------------------
-------------------------------------------------------------------S---S--------
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-------------------------------------------S---------------S----------S---------
---------------S----------S-----------------------------------------------------
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--------------S--S--------------------------------------------------------------
---------S---------------------S-----------------------------S------------------
-----------------------------------------------------S-S---------------S--------
--------------------------------------------------------------------------------
---------------S------------------------S---------------------------------------
-----------------S--------------S----S----------------SSS-----------S--S-----SSS
SSSS-------------------------S------------S--------S---S--------S--S----SSSS-SS-
S-----------S-----S-S-----S-------S----S-S------S-SSS----------S----------------
---S-------------------------S------S-------------------------S---------SS------
----SSS------S--S---S-S---------------S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_593
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-------------CCCGATTTCTCCAACCCTCC-----------------------------------------------
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>reverse_5210
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---------CCAACAATGCCACAACCCTT---------------------------------------------------
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