Multiple sequence alignment - TraesCS1A01G046200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G046200 chr1A 100.000 2300 0 0 1 2300 27397931 27400230 0.000000e+00 4248.0
1 TraesCS1A01G046200 chr7D 96.884 1797 29 7 4 1785 568199194 568197410 0.000000e+00 2983.0
2 TraesCS1A01G046200 chr7D 96.774 124 3 1 2178 2300 568197338 568197215 3.000000e-49 206.0
3 TraesCS1A01G046200 chr7D 96.000 75 3 0 2022 2096 568197411 568197337 3.100000e-24 122.0
4 TraesCS1A01G046200 chr7B 91.923 1461 87 17 653 2096 10244337 10242891 0.000000e+00 2015.0
5 TraesCS1A01G046200 chr7B 87.914 695 33 17 4 662 10281882 10281203 0.000000e+00 771.0
6 TraesCS1A01G046200 chr7B 94.167 120 7 0 2181 2300 10242892 10242773 1.400000e-42 183.0
7 TraesCS1A01G046200 chr7B 82.673 202 31 3 853 1054 684463775 684463972 2.350000e-40 176.0
8 TraesCS1A01G046200 chr4A 90.071 1269 68 14 1 1231 714405715 714406963 0.000000e+00 1592.0
9 TraesCS1A01G046200 chr4A 89.692 941 63 21 1181 2096 714407004 714407935 0.000000e+00 1170.0
10 TraesCS1A01G046200 chr4A 100.000 85 0 0 2095 2179 15772969 15773053 8.510000e-35 158.0
11 TraesCS1A01G046200 chr4A 98.000 50 0 1 508 556 83317731 83317780 4.070000e-13 86.1
12 TraesCS1A01G046200 chr1D 89.759 1201 71 11 264 1414 409532216 409533414 0.000000e+00 1489.0
13 TraesCS1A01G046200 chr5A 80.615 325 52 10 853 1171 512585229 512584910 8.210000e-60 241.0
14 TraesCS1A01G046200 chr2D 91.367 139 7 2 495 628 107866636 107866774 3.900000e-43 185.0
15 TraesCS1A01G046200 chr2B 95.960 99 3 1 2094 2191 23029139 23029041 2.370000e-35 159.0
16 TraesCS1A01G046200 chr2B 97.727 88 2 0 2094 2181 23029053 23029140 3.960000e-33 152.0
17 TraesCS1A01G046200 chr5B 100.000 85 0 0 2095 2179 249578671 249578587 8.510000e-35 158.0
18 TraesCS1A01G046200 chr4B 96.739 92 2 1 2094 2184 504198913 504198822 3.960000e-33 152.0
19 TraesCS1A01G046200 chr4B 97.727 88 2 0 2094 2181 504198827 504198914 3.960000e-33 152.0
20 TraesCS1A01G046200 chr4B 96.000 50 1 1 508 556 467917755 467917706 1.890000e-11 80.5
21 TraesCS1A01G046200 chr3B 98.824 85 1 0 2095 2179 3251086 3251002 3.960000e-33 152.0
22 TraesCS1A01G046200 chr3B 97.701 87 2 0 2095 2181 498466997 498466911 1.420000e-32 150.0
23 TraesCS1A01G046200 chr6B 97.701 87 2 0 2095 2181 657068535 657068621 1.420000e-32 150.0
24 TraesCS1A01G046200 chr5D 84.298 121 7 7 266 380 9921812 9921698 8.690000e-20 108.0
25 TraesCS1A01G046200 chr3D 83.495 103 13 4 2188 2286 331003807 331003909 2.430000e-15 93.5
26 TraesCS1A01G046200 chr4D 90.566 53 1 3 508 556 380463481 380463429 1.470000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G046200 chr1A 27397931 27400230 2299 False 4248.000000 4248 100.000000 1 2300 1 chr1A.!!$F1 2299
1 TraesCS1A01G046200 chr7D 568197215 568199194 1979 True 1103.666667 2983 96.552667 4 2300 3 chr7D.!!$R1 2296
2 TraesCS1A01G046200 chr7B 10242773 10244337 1564 True 1099.000000 2015 93.045000 653 2300 2 chr7B.!!$R2 1647
3 TraesCS1A01G046200 chr7B 10281203 10281882 679 True 771.000000 771 87.914000 4 662 1 chr7B.!!$R1 658
4 TraesCS1A01G046200 chr4A 714405715 714407935 2220 False 1381.000000 1592 89.881500 1 2096 2 chr4A.!!$F3 2095
5 TraesCS1A01G046200 chr1D 409532216 409533414 1198 False 1489.000000 1489 89.759000 264 1414 1 chr1D.!!$F1 1150

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
885 933 1.750778 CAGCAAAGTTTATCCGGGCAT 59.249 47.619 0.0 0.0 0.0 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2262 2453 0.242825 CTCCAAACGGCGAGTAGACA 59.757 55.0 16.62 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 8.082242 GGTTCTTGCAAGTATTACATTTTCTGT 58.918 33.333 25.19 0.00 42.13 3.41
106 107 5.807011 GGCATTAATTGTGGACATGTTTCTC 59.193 40.000 0.00 0.00 0.00 2.87
164 165 6.627395 AATTATCGTCAAAGTGTTGTTCCA 57.373 33.333 0.00 0.00 36.07 3.53
221 222 7.576098 GCCGATGATTCTTTTGGGTTTAGTTTA 60.576 37.037 0.00 0.00 0.00 2.01
227 228 6.628919 TCTTTTGGGTTTAGTTTAGCTGTC 57.371 37.500 0.00 0.00 0.00 3.51
557 598 9.241317 CAAAAGATGAATATGATACAAAGGTGC 57.759 33.333 0.00 0.00 0.00 5.01
668 713 3.690460 CTGGGAAACTGGTCATAAAGCT 58.310 45.455 0.00 0.00 0.00 3.74
758 803 2.027837 TGAGCTGCTAAGTTGCATCAGA 60.028 45.455 0.15 0.00 42.48 3.27
797 842 5.922546 TGCAAATGACACTAACAACGATAC 58.077 37.500 0.00 0.00 0.00 2.24
885 933 1.750778 CAGCAAAGTTTATCCGGGCAT 59.249 47.619 0.00 0.00 0.00 4.40
886 934 2.024414 AGCAAAGTTTATCCGGGCATC 58.976 47.619 0.00 0.00 0.00 3.91
1203 1256 0.394565 GCTTGTGACAGGGACAGACT 59.605 55.000 0.00 0.00 0.00 3.24
1204 1257 1.618837 GCTTGTGACAGGGACAGACTA 59.381 52.381 0.00 0.00 0.00 2.59
1281 1428 4.591072 GGAGCTATCCCAGAGTTTCTGTAT 59.409 45.833 5.46 2.03 42.80 2.29
1373 1542 5.587388 TGGATTAACCCGACTAAGTAGTG 57.413 43.478 0.00 0.00 35.61 2.74
1508 1679 4.219725 TGAGACGAAATGACCATGTGTCTA 59.780 41.667 13.32 3.64 44.75 2.59
1681 1853 4.467795 CAGTTTAGGTCTTCCATCAGGAGA 59.532 45.833 0.00 0.00 46.74 3.71
1683 1855 5.046231 AGTTTAGGTCTTCCATCAGGAGAAC 60.046 44.000 0.00 0.00 46.74 3.01
1823 2004 9.309516 GATAACGGAATTTCAAGATGTACTACA 57.690 33.333 0.00 0.00 0.00 2.74
1831 2012 6.897259 TTCAAGATGTACTACAAATACGGC 57.103 37.500 0.00 0.00 0.00 5.68
1852 2033 1.691219 GTTGGATGGCCTGGGAGAA 59.309 57.895 3.32 0.00 34.31 2.87
1881 2062 5.882000 TGTTCTACCATGAAGAATGTCCATG 59.118 40.000 11.98 0.00 35.53 3.66
1883 2064 6.312141 TCTACCATGAAGAATGTCCATGAA 57.688 37.500 0.00 0.00 39.86 2.57
1884 2065 6.903516 TCTACCATGAAGAATGTCCATGAAT 58.096 36.000 0.00 0.00 39.86 2.57
1886 2067 8.493607 TCTACCATGAAGAATGTCCATGAATAA 58.506 33.333 0.00 0.00 39.86 1.40
1887 2068 9.293404 CTACCATGAAGAATGTCCATGAATAAT 57.707 33.333 0.00 0.00 39.86 1.28
1888 2069 7.948357 ACCATGAAGAATGTCCATGAATAATG 58.052 34.615 0.00 0.00 39.86 1.90
1889 2070 7.781219 ACCATGAAGAATGTCCATGAATAATGA 59.219 33.333 0.00 0.00 39.86 2.57
1890 2071 8.297426 CCATGAAGAATGTCCATGAATAATGAG 58.703 37.037 0.00 0.00 39.86 2.90
1931 2114 4.284490 AGTGTTGACTGAAGGATGAAGCTA 59.716 41.667 0.00 0.00 0.00 3.32
1932 2115 4.390297 GTGTTGACTGAAGGATGAAGCTAC 59.610 45.833 0.00 0.00 0.00 3.58
1933 2116 4.040339 TGTTGACTGAAGGATGAAGCTACA 59.960 41.667 0.00 0.00 0.00 2.74
1934 2117 5.181748 GTTGACTGAAGGATGAAGCTACAT 58.818 41.667 0.00 0.00 0.00 2.29
1985 2174 7.425224 ACTATGGTACTAACAGAAATCAGCT 57.575 36.000 0.00 0.00 0.00 4.24
1986 2175 8.534954 ACTATGGTACTAACAGAAATCAGCTA 57.465 34.615 0.00 0.00 0.00 3.32
2079 2269 2.501723 TCACTGGATTTGGAGGACTAGC 59.498 50.000 0.00 0.00 0.00 3.42
2096 2286 2.703409 CGCAATGGTCGCTGCTAC 59.297 61.111 0.00 0.00 36.38 3.58
2097 2287 1.811266 CGCAATGGTCGCTGCTACT 60.811 57.895 4.25 0.00 36.38 2.57
2098 2288 1.756375 CGCAATGGTCGCTGCTACTC 61.756 60.000 4.25 0.00 36.38 2.59
2099 2289 1.432270 GCAATGGTCGCTGCTACTCC 61.432 60.000 4.25 0.00 35.62 3.85
2100 2290 0.811616 CAATGGTCGCTGCTACTCCC 60.812 60.000 4.25 0.00 0.00 4.30
2101 2291 0.978146 AATGGTCGCTGCTACTCCCT 60.978 55.000 4.25 0.00 0.00 4.20
2102 2292 1.395826 ATGGTCGCTGCTACTCCCTC 61.396 60.000 4.25 0.00 0.00 4.30
2103 2293 1.755008 GGTCGCTGCTACTCCCTCT 60.755 63.158 4.25 0.00 0.00 3.69
2104 2294 1.435515 GTCGCTGCTACTCCCTCTG 59.564 63.158 0.00 0.00 0.00 3.35
2105 2295 1.000771 TCGCTGCTACTCCCTCTGT 60.001 57.895 0.00 0.00 0.00 3.41
2106 2296 0.255033 TCGCTGCTACTCCCTCTGTA 59.745 55.000 0.00 0.00 0.00 2.74
2107 2297 0.382515 CGCTGCTACTCCCTCTGTAC 59.617 60.000 0.00 0.00 0.00 2.90
2108 2298 0.747852 GCTGCTACTCCCTCTGTACC 59.252 60.000 0.00 0.00 0.00 3.34
2109 2299 1.025812 CTGCTACTCCCTCTGTACCG 58.974 60.000 0.00 0.00 0.00 4.02
2110 2300 0.622136 TGCTACTCCCTCTGTACCGA 59.378 55.000 0.00 0.00 0.00 4.69
2111 2301 1.005097 TGCTACTCCCTCTGTACCGAA 59.995 52.381 0.00 0.00 0.00 4.30
2112 2302 2.097825 GCTACTCCCTCTGTACCGAAA 58.902 52.381 0.00 0.00 0.00 3.46
2113 2303 2.694109 GCTACTCCCTCTGTACCGAAAT 59.306 50.000 0.00 0.00 0.00 2.17
2114 2304 3.887716 GCTACTCCCTCTGTACCGAAATA 59.112 47.826 0.00 0.00 0.00 1.40
2115 2305 4.261530 GCTACTCCCTCTGTACCGAAATAC 60.262 50.000 0.00 0.00 0.00 1.89
2116 2306 3.705051 ACTCCCTCTGTACCGAAATACA 58.295 45.455 0.00 0.00 33.96 2.29
2117 2307 4.287552 ACTCCCTCTGTACCGAAATACAT 58.712 43.478 0.00 0.00 34.59 2.29
2118 2308 4.099573 ACTCCCTCTGTACCGAAATACATG 59.900 45.833 0.00 0.00 34.59 3.21
2119 2309 4.028131 TCCCTCTGTACCGAAATACATGT 58.972 43.478 2.69 2.69 34.59 3.21
2120 2310 4.098960 TCCCTCTGTACCGAAATACATGTC 59.901 45.833 0.00 0.00 34.59 3.06
2121 2311 4.042398 CCTCTGTACCGAAATACATGTCG 58.958 47.826 0.00 0.00 34.59 4.35
2122 2312 3.441163 TCTGTACCGAAATACATGTCGC 58.559 45.455 0.00 0.00 34.59 5.19
2123 2313 3.129813 TCTGTACCGAAATACATGTCGCT 59.870 43.478 0.00 0.00 34.59 4.93
2124 2314 3.183754 TGTACCGAAATACATGTCGCTG 58.816 45.455 0.00 0.00 35.93 5.18
2125 2315 1.651987 ACCGAAATACATGTCGCTGG 58.348 50.000 0.00 1.83 35.93 4.85
2126 2316 1.206132 ACCGAAATACATGTCGCTGGA 59.794 47.619 0.00 0.00 35.93 3.86
2127 2317 1.860950 CCGAAATACATGTCGCTGGAG 59.139 52.381 0.00 0.00 35.93 3.86
2128 2318 1.258982 CGAAATACATGTCGCTGGAGC 59.741 52.381 0.00 0.00 37.78 4.70
2129 2319 2.279741 GAAATACATGTCGCTGGAGCA 58.720 47.619 0.00 0.00 42.21 4.26
2130 2320 1.945387 AATACATGTCGCTGGAGCAG 58.055 50.000 0.00 0.00 42.21 4.24
2140 2330 3.620061 CTGGAGCAGCTGAAGTTCA 57.380 52.632 20.43 5.25 0.00 3.18
2141 2331 1.440708 CTGGAGCAGCTGAAGTTCAG 58.559 55.000 25.68 25.68 46.90 3.02
2160 2350 2.802787 GCTACTCCAGCGACATGTAT 57.197 50.000 0.00 0.00 41.37 2.29
2161 2351 3.099267 GCTACTCCAGCGACATGTATT 57.901 47.619 0.00 0.00 41.37 1.89
2162 2352 3.458189 GCTACTCCAGCGACATGTATTT 58.542 45.455 0.00 0.00 41.37 1.40
2163 2353 3.491267 GCTACTCCAGCGACATGTATTTC 59.509 47.826 0.00 0.00 41.37 2.17
2164 2354 2.540515 ACTCCAGCGACATGTATTTCG 58.459 47.619 0.00 0.00 38.31 3.46
2165 2355 1.860950 CTCCAGCGACATGTATTTCGG 59.139 52.381 0.00 0.00 35.73 4.30
2166 2356 1.206132 TCCAGCGACATGTATTTCGGT 59.794 47.619 0.00 0.07 46.29 4.69
2167 2357 2.427812 TCCAGCGACATGTATTTCGGTA 59.572 45.455 8.74 0.00 43.70 4.02
2168 2358 2.538449 CCAGCGACATGTATTTCGGTAC 59.462 50.000 8.74 0.00 43.70 3.34
2169 2359 3.183754 CAGCGACATGTATTTCGGTACA 58.816 45.455 8.74 0.00 43.70 2.90
2170 2360 3.242944 CAGCGACATGTATTTCGGTACAG 59.757 47.826 8.74 0.00 43.70 2.74
2171 2361 3.129813 AGCGACATGTATTTCGGTACAGA 59.870 43.478 7.49 0.00 43.71 3.41
2172 2362 3.486108 GCGACATGTATTTCGGTACAGAG 59.514 47.826 0.00 0.00 37.93 3.35
2173 2363 4.042398 CGACATGTATTTCGGTACAGAGG 58.958 47.826 0.00 0.00 37.93 3.69
2174 2364 4.369182 GACATGTATTTCGGTACAGAGGG 58.631 47.826 0.00 0.00 37.93 4.30
2175 2365 4.028131 ACATGTATTTCGGTACAGAGGGA 58.972 43.478 0.00 0.00 37.93 4.20
2176 2366 4.099573 ACATGTATTTCGGTACAGAGGGAG 59.900 45.833 0.00 0.00 37.93 4.30
2177 2367 3.705051 TGTATTTCGGTACAGAGGGAGT 58.295 45.455 0.00 0.00 31.33 3.85
2178 2368 4.858850 TGTATTTCGGTACAGAGGGAGTA 58.141 43.478 0.00 0.00 31.33 2.59
2262 2453 2.171003 GGGTGCATTTAAAGCCAGTCT 58.829 47.619 0.00 0.00 34.02 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 6.663093 AGAAACATGTCCACAATTAATGCCTA 59.337 34.615 0.00 0.00 0.00 3.93
164 165 2.158813 ACGAAGTCCAGGAACACAACAT 60.159 45.455 0.00 0.00 29.74 2.71
199 200 8.306761 CAGCTAAACTAAACCCAAAAGAATCAT 58.693 33.333 0.00 0.00 0.00 2.45
221 222 1.891150 CAAATTTCTGCAGGGACAGCT 59.109 47.619 15.13 0.00 43.00 4.24
227 228 0.906775 ATGCCCAAATTTCTGCAGGG 59.093 50.000 15.13 7.27 42.55 4.45
557 598 5.437191 AATTAAGGGGGTTCTACTGTGAG 57.563 43.478 0.00 0.00 0.00 3.51
699 744 9.707957 AATGAACCATTAACTTATAACCCATGA 57.292 29.630 0.00 0.00 31.77 3.07
797 842 3.485216 GGTCATCACCTAAATTTGCGTCG 60.485 47.826 0.00 0.00 40.00 5.12
1203 1256 4.675146 GCAATCTTCTTCCGCAAATGCTTA 60.675 41.667 3.63 0.00 39.32 3.09
1204 1257 3.841643 CAATCTTCTTCCGCAAATGCTT 58.158 40.909 3.63 0.00 39.32 3.91
1281 1428 3.989817 CACTTCAGTCAACGATCACATCA 59.010 43.478 0.00 0.00 0.00 3.07
1373 1542 2.093537 TTGTGCCGCAAAATGACCCC 62.094 55.000 0.00 0.00 33.53 4.95
1508 1679 0.609662 GATGCAACCCCAGCAAATGT 59.390 50.000 0.00 0.00 46.27 2.71
1803 1984 9.916397 CGTATTTGTAGTACATCTTGAAATTCC 57.084 33.333 3.28 0.00 0.00 3.01
1823 2004 1.762708 CCATCCAACCTGCCGTATTT 58.237 50.000 0.00 0.00 0.00 1.40
1976 2165 1.373570 AAGCCGTGCTAGCTGATTTC 58.626 50.000 17.23 0.45 40.49 2.17
2016 2206 0.606604 GCGTCTTCTTCACCCCTACA 59.393 55.000 0.00 0.00 0.00 2.74
2018 2208 0.896940 ACGCGTCTTCTTCACCCCTA 60.897 55.000 5.58 0.00 0.00 3.53
2050 2240 3.510459 TCCAAATCCAGTGAGACTCTGA 58.490 45.455 3.68 0.00 35.20 3.27
2079 2269 1.756375 GAGTAGCAGCGACCATTGCG 61.756 60.000 1.43 0.00 44.80 4.85
2096 2286 4.099573 ACATGTATTTCGGTACAGAGGGAG 59.900 45.833 0.00 0.00 37.93 4.30
2097 2287 4.028131 ACATGTATTTCGGTACAGAGGGA 58.972 43.478 0.00 0.00 37.93 4.20
2098 2288 4.369182 GACATGTATTTCGGTACAGAGGG 58.631 47.826 0.00 0.00 37.93 4.30
2099 2289 4.042398 CGACATGTATTTCGGTACAGAGG 58.958 47.826 0.00 0.00 37.93 3.69
2100 2290 3.486108 GCGACATGTATTTCGGTACAGAG 59.514 47.826 0.00 0.00 37.93 3.35
2101 2291 3.129813 AGCGACATGTATTTCGGTACAGA 59.870 43.478 7.49 0.00 43.71 3.41
2102 2292 3.242944 CAGCGACATGTATTTCGGTACAG 59.757 47.826 8.74 0.00 43.70 2.74
2103 2293 3.183754 CAGCGACATGTATTTCGGTACA 58.816 45.455 8.74 0.00 43.70 2.90
2104 2294 2.538449 CCAGCGACATGTATTTCGGTAC 59.462 50.000 8.74 0.00 43.70 3.34
2105 2295 2.427812 TCCAGCGACATGTATTTCGGTA 59.572 45.455 8.74 0.00 43.70 4.02
2106 2296 1.206132 TCCAGCGACATGTATTTCGGT 59.794 47.619 0.00 0.07 46.29 4.69
2107 2297 1.860950 CTCCAGCGACATGTATTTCGG 59.139 52.381 0.00 0.00 35.73 4.30
2108 2298 1.258982 GCTCCAGCGACATGTATTTCG 59.741 52.381 0.00 0.00 38.31 3.46
2109 2299 2.279741 TGCTCCAGCGACATGTATTTC 58.720 47.619 0.00 0.00 45.83 2.17
2110 2300 2.283298 CTGCTCCAGCGACATGTATTT 58.717 47.619 0.00 0.00 45.83 1.40
2111 2301 1.945387 CTGCTCCAGCGACATGTATT 58.055 50.000 0.00 0.00 45.83 1.89
2112 2302 3.675086 CTGCTCCAGCGACATGTAT 57.325 52.632 0.00 0.00 45.83 2.29
2122 2312 1.440708 CTGAACTTCAGCTGCTCCAG 58.559 55.000 9.47 7.81 37.72 3.86
2123 2313 3.620061 CTGAACTTCAGCTGCTCCA 57.380 52.632 9.47 1.59 37.72 3.86
2142 2332 3.731216 CGAAATACATGTCGCTGGAGTAG 59.269 47.826 0.00 0.00 0.00 2.57
2143 2333 3.490249 CCGAAATACATGTCGCTGGAGTA 60.490 47.826 0.00 0.00 35.93 2.59
2144 2334 2.540515 CGAAATACATGTCGCTGGAGT 58.459 47.619 0.00 0.00 0.00 3.85
2145 2335 1.860950 CCGAAATACATGTCGCTGGAG 59.139 52.381 0.00 0.00 35.93 3.86
2146 2336 1.206132 ACCGAAATACATGTCGCTGGA 59.794 47.619 0.00 0.00 35.93 3.86
2147 2337 1.651987 ACCGAAATACATGTCGCTGG 58.348 50.000 0.00 1.83 35.93 4.85
2148 2338 3.183754 TGTACCGAAATACATGTCGCTG 58.816 45.455 0.00 0.00 35.93 5.18
2149 2339 3.129813 TCTGTACCGAAATACATGTCGCT 59.870 43.478 0.00 0.00 34.59 4.93
2150 2340 3.441163 TCTGTACCGAAATACATGTCGC 58.559 45.455 0.00 0.00 34.59 5.19
2151 2341 4.042398 CCTCTGTACCGAAATACATGTCG 58.958 47.826 0.00 0.00 34.59 4.35
2152 2342 4.098960 TCCCTCTGTACCGAAATACATGTC 59.901 45.833 0.00 0.00 34.59 3.06
2153 2343 4.028131 TCCCTCTGTACCGAAATACATGT 58.972 43.478 2.69 2.69 34.59 3.21
2154 2344 4.099573 ACTCCCTCTGTACCGAAATACATG 59.900 45.833 0.00 0.00 34.59 3.21
2155 2345 4.287552 ACTCCCTCTGTACCGAAATACAT 58.712 43.478 0.00 0.00 34.59 2.29
2156 2346 3.705051 ACTCCCTCTGTACCGAAATACA 58.295 45.455 0.00 0.00 33.96 2.29
2157 2347 4.886489 ACTACTCCCTCTGTACCGAAATAC 59.114 45.833 0.00 0.00 0.00 1.89
2158 2348 5.121380 ACTACTCCCTCTGTACCGAAATA 57.879 43.478 0.00 0.00 0.00 1.40
2159 2349 3.978610 ACTACTCCCTCTGTACCGAAAT 58.021 45.455 0.00 0.00 0.00 2.17
2160 2350 3.446442 ACTACTCCCTCTGTACCGAAA 57.554 47.619 0.00 0.00 0.00 3.46
2161 2351 3.118112 CCTACTACTCCCTCTGTACCGAA 60.118 52.174 0.00 0.00 0.00 4.30
2162 2352 2.437281 CCTACTACTCCCTCTGTACCGA 59.563 54.545 0.00 0.00 0.00 4.69
2163 2353 2.172293 ACCTACTACTCCCTCTGTACCG 59.828 54.545 0.00 0.00 0.00 4.02
2164 2354 3.949586 ACCTACTACTCCCTCTGTACC 57.050 52.381 0.00 0.00 0.00 3.34
2165 2355 6.185114 TCATACCTACTACTCCCTCTGTAC 57.815 45.833 0.00 0.00 0.00 2.90
2166 2356 6.836714 TTCATACCTACTACTCCCTCTGTA 57.163 41.667 0.00 0.00 0.00 2.74
2167 2357 5.728937 TTCATACCTACTACTCCCTCTGT 57.271 43.478 0.00 0.00 0.00 3.41
2168 2358 6.015010 CCATTTCATACCTACTACTCCCTCTG 60.015 46.154 0.00 0.00 0.00 3.35
2169 2359 6.078664 CCATTTCATACCTACTACTCCCTCT 58.921 44.000 0.00 0.00 0.00 3.69
2170 2360 5.246429 CCCATTTCATACCTACTACTCCCTC 59.754 48.000 0.00 0.00 0.00 4.30
2171 2361 5.155905 CCCATTTCATACCTACTACTCCCT 58.844 45.833 0.00 0.00 0.00 4.20
2172 2362 4.286291 CCCCATTTCATACCTACTACTCCC 59.714 50.000 0.00 0.00 0.00 4.30
2173 2363 5.152934 TCCCCATTTCATACCTACTACTCC 58.847 45.833 0.00 0.00 0.00 3.85
2174 2364 6.936968 ATCCCCATTTCATACCTACTACTC 57.063 41.667 0.00 0.00 0.00 2.59
2175 2365 7.707467 AAATCCCCATTTCATACCTACTACT 57.293 36.000 0.00 0.00 0.00 2.57
2176 2366 8.762481 AAAAATCCCCATTTCATACCTACTAC 57.238 34.615 0.00 0.00 30.37 2.73
2177 2367 8.787818 AGAAAAATCCCCATTTCATACCTACTA 58.212 33.333 0.00 0.00 37.87 1.82
2178 2368 7.652554 AGAAAAATCCCCATTTCATACCTACT 58.347 34.615 0.00 0.00 37.87 2.57
2262 2453 0.242825 CTCCAAACGGCGAGTAGACA 59.757 55.000 16.62 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.