>input_sequence_84500
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-------ATGCTAACTGAAGATGAGTTTGAGACGGCGTTGGCTACGCTGTTAGATAAGTACGATCTGAGAAAGCACCCCT
ACATGACCCAAATATACGACATCAGAAA--G---GTGGGCAAAACCATATTTCAAGGGTTTTTTCTGTGCCAAGATGACG
AGCATACAACGCAGTGAGAGCGTTTCCCCATTTTTGGCTTGTGACAGGGACAGACTAAGCATTTGCGGAAGAAGATTGCT
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--------------TACGAGATAGTGACAATGAAAGGGAACAAAGGAGCTATCCCAGAGTTTCTGTATGATGTGATCGTT
GACTGA--------------------------------------------------------------------------
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>chr1A_1_TraesCS1A01G046200
TTGCAGAGACGGGTTGGTGCAGATGTGGCAAATTGATGTTGGTTTTTCCTCTTAGGTTCTTGCAAGTATTACATTTTCTG
TAGGCATTAATTGTGGACATGTTTCTCATAAACTTTCTTACTTCAAATCCAGTACTTTAATAATTATCGTCAAAGTGTTG
TTCCATGTTGTGTTCCTGGACTTCGTGTGGTACGAGCCGATGATTCTTTTGGGTTTAGTTTAGCTGTCCCTGCAGAAATT
TGGGCATGTTTAGTACTTTAGTTATG-----------------------TTCTCAGACTACTTATTTCTGTGATCTTCAG
CGATGAT--------GGAAACTGGAGTGCAGCTTAATTTGTCTATATATTCTTGCAGTGGAGAAGGTATGTCAAACATAT
ATTTGATCATTCCAACGTTTGGCACTTAAAGCATGTGCTTTTATATGCAGATCTTGCTGGTGTTCTATCATGCATTTATG
TGTTTTAGTTTTCTTTTCCGC--------AAACATATTTTAGTCCATCTGAGATCATGTGGTAGTTCCCAA-ATCTCCAA
GATTAAGAAACCAAAAGATGAATATGATACAAAGGTGCTCACAGTAGAACCCCCTTAATTTGTTGGATAAGTATTATCTA
TTAGAAACAAG----ATAATTCTCCACCTCATAACTTCATGAACTCAGAAGCTGGGAAACTGGTCATAAAGCTAGGCTTT
CATATTATAATTCGTTCATTTTTTCATGGGTTATAAGTTAATGGTTCATTGAGTGCATGCATGAGCTGCTAAGTTGCATC
AGATATGAGTTTACAATATGCAAATGACACTAACAACGATACGACGCAAATTTAGGTGATGACCAAACAAGAGGCTGTTG
ATGAGATCACTACTTTTGGAGGTGGCAATCAGCAAAGTTTATCCGGG---CATCGTGCATAGGTGGTGCAAAAATGGCAT
GTGCTGAAGAAAACGAAGGAGACATTGGGCCCTCTGTACACGAAGAAGAGTGAGTTCCAGGCTGAGTTCCATGAGGTTGT
GAACCACATGCTAACTGAAGATGAGTTTGAGACGGCGTTGGCTACGCTGTTAGATAAGTACGATCTGAGAAAGCACCCCT
ACATGACCCAAATATACGACATCAGAAA--G---GTGGGCAAAACCATATTTCAAGGGTTTTTTCTGTGCCAAGATGACG
AGCATACAACGCAGTGAGAGCGTTTCCCCATTTTTGGCTTGTGACAGGGACAGACTAAGCATTTGCGGAAGAAGATTGCT
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--------------TACGAGATAGTGACAATGAAAGGGAACAAAGGAGCTATCCCAGAGTTTCTGTATGATGTGATCGTT
GACTGAAGTGGAAGATAGTAGTAGGT----------------------GTATCTTTTGGCTGTGCGTGTGCTAGGCAGTT
GGATTAACCCGACTAAGTAGTGGGGTCATTTTGCGGCACAAT-CCCTACCATCTTGTATTTTGGG-AAAACTATAGTCAT
GTCATATTTTCCCAGGTGGGAACCTAATTAGACTAAGTGAAAACTGGTTATGTTGTGAGACGAAATGACCATGTGTCTAC
ATTTGCTGGGGTTGCATCTATTTCTGGTGACTTGCTTTACCTACATGACATGGGCGACCGTGTTTATATAGCAAAACAAA
CCTTTTGGAGAGCCCCAAAAATTTCAAGTAGGATGAGTGGTGTCGGCAAA-TTTTGTGTGCCTAGCAAGCAGTTTAGGTC
TTCCATCAGGAGAAC---AAAAA-AATGGCGGTCATGTCTGAACTGACAAAGGTTTATGTAATT----CCAAAGGTATTG
CTCTGTTTATTCAACTGACCAAGTTTGCAAATGTGA-TGGTTAGGAGGACGTTAGTTGATAACGGAATTTCAAGATGTAC
TACAAATACGGCAGGTTGGATGGCCTGGGAGAAGTGGTGTTCTACCATGAAGAATGTCCATGAATAATGAG--TGTATTA
CTCAGATGCGAGTGTTGACTGAAGGATGAAGCTACATACATATTAGATTTGTAACCTACAAGTACT------ATGGTACT
AACAGAAATCAGCTAGCACGGCTTAGGCCAGCTCAG-AAAAAACATGTAGGGGTGAAGAAGACGCGTCGGACATGGCGGT
CAGAGTCTCACTGGATTTGGAGGACTAGCGCAATGGTCGCTGCTACTCCCTCTGTACCGAAATACATGTCGCTGGAGCAG
CTGAAGTTCAGCTACTCCAGCGACATGTATTTCGGTACAGAGGGAGTAGTAGGTATGAAATGGGGATTTTTCTTTTGAGT
GCGTCTGGATGTGGAGGGC-GAGACGGTGGGTGGGTGCATTTAAAGCCAGTCTGTCTACTCGCCGTTTGGAGACCGGTGG
AGTTGATGGC
>chr4A_1
TTACAGAGACGGGTCGGTGCAGATGTGGCAAGCTGATGTTGGTTTTTCCTCTTAGGTTCTTGCAAGTATTACATTTTCTG
CAAGCATTAATTGTGGACATGTTTCTTATAAA--------------ATCCAGCGCTTTAATAATTATTGTCGAAGTGTTG
TTCCGTGTTGTGTTCCTCGACTTCGTGTGGTACGAGCCGCTGATTCCTTTGGATTTAGTTTTGCTCTACCTGCAGAAATT
TGGGTATGTTTAGTACTTTAGTTATGCTTCTCGAGCGGCATTGGAATGGTTCTCAGATTACTTTTTTCTGTGATCTTCAG
CGATGAT--------GGAAACTGGAGTGCAGCTTAATTTGTCTATATATTTTTGCAGTGGAGAAGGTATGTCAAACATAT
ATTTGATCATTCCAACATTTGGCACTTAAACCATGTGCTTTTACATGCAGATCTTGATGGTGTTGTATCATGCATTTATG
TGCTTTACTTTTCTTTTCTGCAAAGAAGAAAACATATTTTAGTCCATCTGAGCTCCTGTGGTAGTTCCCAAGATCTCCAA
GATTAAGAAACCAAAAGATGGATATGATACAAAGGTGTTCACAGTAGAACCCCCTGAATTTGTTGGATAAGTACTATCTA
TTAGAAATAAGTTAGATAATTCTCCACCTCATAACTTCATGAACTCAGAAGCTGGGAAACTGATCATAAAGCGAGGCTTT
CACATTTTAATTCGTTCATTTTCCCATGGGTTATAAGTTAATGGTTCATTGAGTTCATGCATGAGCTGCTAAGTTGCATC
AGCTATGAGTTTACAATATGCAAATGACACTAACAATGATATGACGCAAATTCAGGTGATGACCAAACAAGAGGCTGTTG
ATGAGATCACTACTTTTGGAGGTGGCAATCAGCAAAGTTTATCCGGG---C---GTGCACAGGTGGTGCAAATGAA--AT
GTGCTGAAGAAAGCGAAGGAGACATTGGGCCCTCAGTACACGAAGAAGAGTGAGTTCCAAGCTGAGTTCCATGAGGTTTT
GAACCACATGCTAACTGAAGATGAGTTTGAGACGGCGTGGGCTGCGCTGTTAGATAAGTACAATCTGAGAAAGCACCCCT
ACATGACCCAGATATACGAAATCAGAAAAAG---GTGGGCAAAACCATATTTCAAGGGTTTTTTCTATGCCAAGATGAC-
AGCACACAACGCAGTGATAACGTTTCCCCATTTTTGGCTTGTGACAGGGACAGACCGAGCATCTGCAGAAGAAGATTGCT
TACTCCCTCCGTTCCAAAATAGATGAACAAAGTTTGTACTAACTTTGGCTTGTGACAGGGACAGACCGAGTCATCTATTT
TGGAATGGAGGGAGTACGAGATAGTGACAATGAAAAGGAACAAAGGAGCTATCCCAGAGTTTCTGTACGATGTGATCGTT
GACTGAAGTGGAAGATAGTGGTAGTT----------------------GTATCTTTTGGCTGTACGTATGCTAGGCAGTT
AGATTAACCCGACTAAGTAGTTGGGCCATTTTGCGGCAAAATCCCCTGCCATCTTGTATTTTTGGGAAAACTATAGTCAT
GCAATATTTTCCCAGGCGGGAACCTA-TTAGACTAAGTGAAAACTGGTTATGTTGTGAGACGAAATGACCATGTGTCTGC
ATTTGCTGGGGTTGCATCTATTTCTGGCGACTTGCTTTACCTACACGACGTGGGCGACCGTGTTCATATAGCAAAACAAA
CCTTTTGGAGAGCCGCAAAAAATTCAAGTAGGATGGGTGATGTCGGCAAATTTTTGTGTGCCTAGCAAGCAGTTTAGCTC
TTCCAACAGGTGGAACAAAAAAA-ATTGACGGTCATGTATGAACTGACAAAGGTTTATGTAATTGATTCCAAAGGTATTG
-TCTGTTTATTCAACTGACCAAGTTTGCACATGTGA-GGGTTAGGAGGACGTTAGTTGATAACTGAATTTCAAGATGTAC
TACGAATACGGGAGGTTGGATGGCCTGGGAGAGGTGCTGTTCTACCATGAAGAAAGTCCATAACAATCAGTCCTGTATTA
CTCAGATGCGAGTGTTGACTGAAGGATGAAGCT----ACATGTTAGATTTGTAGCCTACGAGTACTGTCTATATGGTACT
AACAAAATTCAGCGTGCACGGCTTAGGCCAGCTAAGAAAAAAACAGGGAGGGATGAAGAAGACGCGTCGGACATGGCGGC
CAGACTCTCACTGGATTTTGTAGGCTAGTGCAATGGTCGCTGCTA-----------------------------------
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>chr7D_4
---CAGAGACGGGTTGGTGCAGATGTGGCAAATTGATGTTGGTTTTTCCTCTTAGGTTCTTGCAAGTATTACATTTTCTG
CAGGCATTAATTGTGGACATGTTTCTTATAAACTTTCTTACTTCAAATCCAGTACTTCAATAATTATCGTCAAAGTGTTG
TTCCGTGTTGTGTTCCTGGACTTCGTGTGGTACGAGCCGCTGATTCTTTTGGGTTTAGTTTGGCTGTACCTGCAGAAATT
TGGGCATGTTTAGTACTTTAGTTATG-----------------------TTCTCAGACTACTTATTTCTGTGATCTTCAG
CGATGAT--------GGAAACTGGAGTGCAGCTTAATTTGTCTATATATTCTTGCAGTGGAGAAGGTATGTCAAACATAT
ATTTGATTATTCCAACGTTTGGCACTTAAAGCATGTGCTTTTATATGCAGATCTTGCTGGTGTTGTATCATGCATTTATG
TGTTTTAGTTTTCTTTTCCGCAAAGAAGAAAACATATTTTAGTCCATCTGAGATCATGTGGTAGTTCCCAA-ATCTCCAA
GATTAAGAAACCAAAAGATGAATATGATACAAAGGTGTTCACAGTAGAACCCCCTTAATTTGTTGGATAAGTATTATCTA
TTAGAAACAAGTTAGATAATTCTCCACCTCATAACTTCATGAACTCAGAAGCTGGGAAACTGGTCATAAAGCGAGGCTTT
CATATTTTAATTCGTTCATTTTTCCATGTGTTATAAGTTAATGGTTCATTGAGTGCATGCATGAGCTGCTAAGTTGCATC
AGCTATGAGTTTACAATATGCAAATGACACTAACAACGATATGACGCAAATTTAGGTGATGACCAAACAAGAGGCTGTTG
ATGAGATCACTACTTTTGGAGGTGGCAATCAGCAAAGTTTATCCGGG---CACTGTGCATAGGTGGTGCAAAAATGGCAT
GTGCTGAAGAAAACGAAGGAGACATCGGGCCCTCTGTACACGAAGAAGAGTGAGTTCCAGGCTGAGTTCCATGAGGTTGT
GAACCACATGCTAACTGAAGATGAGTTTGAGACGGCGTTGGCTACGCTGTTAGATAAGTACGATCTGAGAAAGCACCCCT
ACATGACCCAAATATACGACATCAGAAA--G---GTGGGCAAAACCATATTTCAAGGGTTTTTTCTGTGCCAAGATGACG
AGCACACAATGCAGTGAGAGCGTTTCCCCATTTTTGGCTTGTGACAGGGA------------TAGCGGAAGAAGATTGCT
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--------------TACGAGATAGTGACAATGAAAGGGAACAAAGGAGCTATCCCAGAGTTTCTGTACGATGTGATCGTT
GACTGAAGTGGAAGATAGTAGTAGGT----------------------GTATCTTTTGGCTGTGCGTGTGCTAGGCAGTT
GGATTAACCCGACTAAGTAGTTGGGTCATTTTGCGGCACAATCCCCTACCATCTTGTATTTTGGG-AAAACTATAGTCAT
GTCATATTTTCCCAGGTGGGAACCTAATTAGACTAAGTGAAAACTGGTTATGTTGTGAGACGAAATGACCATGTGTCTGC
ATTTGCTGGGGTTACATCTATTTCTGGTGACTTGCTTTACCTACGTGACATGGGCGACCGTGTTTATATAGCAAAACAAA
CCTTTTGGAGAGCCCCAAAAATTTCAAGTAGGATGAGTGGTGTCGGCAAATTTTGTGTGCCTTAGCAAGCAGTTTAGGTC
TTAAATCAGGAGGAACAAAAAA---ATGGCGGTCATGTCTGAACTGACAAAGGTTTATGTAATT----CCAAAGGTATTG
CTCTGTTTATTCGACTGACCAAGTTTGCAAATGTGA-TGGTTA-------------------------------------
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--------------------------------------------------GGGTGAAGAAGACGCGTCGGACATGGCGTC
CAGAGTCTCACTGGATTTGGAGGACTAGTGCAATGGTCGCTGCTA-----------------------------------
------------------------------------------------GTAGGTATGAAATGGGGATTTTTCTTTTGAGT
GCATCTGGATGTGGAGGGGTGAGACGGTGGGTGGGTGCATTTAAAGCCAGTCCGTCTACTCGCCGTTTGGAGACCGGTGG
AGTTGATGGC
>chr7B_4
---CAGAGACGGGTCGGTGCAGATGTGGCAAATTGATGTTGGTTTTTCCTCCTAGGTTCTTGCAAGTATTACATTTTCTG
CAGGAATTAATTGTGGACATGTTTCTTATAAA--------------ATCCAGTACTTTAATAGTTATTGTCAAAGTGTTG
TTCCGTGTTGTGTTCCTCGACTTCGTGTGGTACGAGCCGCTGATTCCTTTGGATTTAGTTTTGCTCTACCTGCAGAAATT
TGGGCATGTTTAGTACTTTAGTTATGCTTCTCGAGCGGCATTGGAATGGTCCTCAGATTAATTTTTTCTGTGATCTTCAG
CGATGAT--------GGAAACTGGAGTGCAGCTTAATTTGTCTATATATTCTTGCAGTGGAGAAGGTATGTCAAACATAT
ATTTGATCATTCCAACATTTGGCACTTAAACCATGTGCTTTTACATGCAGATCTTGATGGTGTTGTATAATGCATTTATG
TGCTTTACTTTTCTTTTCTGCAAAGAAGAAAACATATTTTAGTCCATCTGAGCTCATGTGGTAGTTCCCAAGATCTTCAA
GATTAAGAAACCAAAAGTTGGATATGATACAAAGGTGTTCACAGTAGAACCCC-TGAATTTGTTGGATAAGTACTATCTA
TTAGAAACACGTTAGATAATTCTCCACCTCATAACTTCATGAACTTAGAAGCTGGGAAACTTGTCA--------------
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>chr1D_264
ATGATT--------------------------------------------------------------------------
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---------------------------------------------------CTCAGACTACTTTTTCCTGTGATCTTCAG
CGATGATGCCATGATGGAAACTGGAGTGCAACTTAAGTTGTCTATATATTCTTGCAGTGGAGAAGGTATGTCAAACATAT
ATTTGATCATTCCAATGTTTGGCACTTAAACCATGTGCTTTTACATGCAGATCTTCCTGGTGTTGTATCATGCATTTATG
TGCTTTAGTTTTCTTTTCTGCAAATAAGAAAACATATGTTAGTTCATCTGAGCTCATGTGGTAGTTCCCAAGATCTCCAA
GATTAAGAAATCAAAAGATGAATATGATACAAAGGTGTTCACAGTAGAACCCCCTGAATTTGTTGGATAAGTATTATCTA
TTAGAAACAAGTTAGACAATTCTCCACCTCATAACTTCATGAATTCAGAAGCTGGGAAACTGGTCATAAAGCGAGGCTTT
CATTTTTTGATTCGTTCATTTTGCCATGGGTTATAAGTTAATGGTTCATTGAGTTCATGCATGAGCTGCTATGTTGCATC
AGCTATGAGTTTACAATTTGCAAATGACACTAACAAAGATATGACGCAAATTCAGGTGATGACCAAACAAGAGGCTGTTG
ATGAGATCACTACTTTTGGAGGTGGCAATCAGCAAAGTTTATCCGGGCACC---GTGCACAGGTGGTGC--AAATGGCAT
GTGCTGAAGAAAGCGAAGGAGACACTGGGCCCTCTGTACACGAAGAAGAGTGAGTTCCAGGCTGAGTTCCACGAGGTTGT
GAACCACATGCTAACTGAAGACGAGTTTGAGACAACGTGGGATATGCTGTTAGATAAGTACAATCTGAGAAAGCACCCCT
ACATGACCCAAATATATGAAATCAGAAAAAAAAAGTGGGCAAAACCATATTTCAAGGGTGTTTTCTGCGCCAAGATGACG
AGCACACAATGCAGTAAGAGCGTTTCCCCATGTTTGGCTTATGACAGGGACAGATCGAGCATTTGCCGAAGAAGATTGCT
T-------------------------------------------------------------------------------
---------------ACGAGAAAATGACAATGAAAGGGAACAAAGGAGCTATCCCAGAGTTCCTGTGCGACGCGATCGTT
GACTGAAGTGGAAGATAGTAGTACTTTCAGTCTTCATGCAGCCGGGCCGTATCTTTTAGCTGTACGTGTGCTAGGCAGTT
AGATTAACCCGACTAAGTAGTTGGGTCATTTTGCGGCACAATCCCCTACCATCTTGTATGTTG-----------------
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>chr7B_653
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--------------------------------------------------------AAACTGATCATAAAGCGAGGCTTT
CACATTTTAATTCGTTCATTTTCCCATGGGTTATAAGTTAATGGTTCATTGAGTTCATGCATGAGCTGCTAAGTTGCATC
AGCTATGAGTTTACAATATGCAAATGACACTAACAATGATATGACGCAAATTCAGGTGATGACCAAACAAGAGGCTGTTG
ATGAGATCACTACTTTTGAAGGTGGCAATCAGCAAAGTTTATCCGGG---C---GTGCACAGGTGGTGC--AAATGGCAT
GTGCTGAAGAAAGTGAAGAACACATTGGGCCCTCTGTACACGAAGAAGAGTGAGTTCCAGGCTGAGTTCCATGAGGTTTT
GAACCACATGCTAACTGAAGATGAGTTTGAGACGGCATGGTCTGCGCTGTTAGATAAGTACAATCTGAGAAAGCACCCCT
ACATGACCCAAATATATGAAATCAGAAAAAG---GTGGGCAAAACCATATTTCAAGGGTTTTTTCTATGCCAAGATGAC-
AGCATACAACGAAGTGACAACGTTTCCCCATTTTTGGCTTGTGACAGGGACAGACCGAGGATCTGCGGAAGAAGATTGCT
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--------------TACGAGATAGTGACAATGAAAGGGAACAAAGGAGCTATCCCAGAGTTTCTGTACGATG--ATCGTT
GACTGAAGTGGAAGATAGTGGTAGTT----------------------GTATCTTTTGGCTGTACGTATGCTAGGCAGTT
AGATTAACCCGACTAAGTAGTTGGGCCATTTTGCGGCAAAATCCCCTGCTATCTTGTATTTTTGGGTAAACTATAGTCAT
GTAATTTTTTCCCAGGCGGGAACCTAATTAGACTAAGTGAAAACTGGTTATGTTGTGAGACGAAATGACTATGTCTCTGC
ATTTGCTGGGGTTGCATCTATTTCTGGCAACTTCCTTTACCTACAGGACGTGGGCGACCGTGTTCATATAGCAAAACAAA
CCTTTTGAAGAGCCCCAAAAATTTCTAGTAGGATGGGTGATGTCGGCAAATTTTTGTGTGCCTAGCAAGCAGTTTAGCTC
TTCCAACAGGAGGAACAAAAAAAAATTGACGGTCATGTATGAACTGACAAAGGTTGATGTAATT----CCAAAGGTATTG
CTCTGTTTATTCAACTGACCAAGTTTGCACATGTGAAGGGTTAGGAGGACGTTAGTTGATAACTGAATTTCAAGATGTAC
TACGAATACAGGAGGTTGGATGGCCTGGGAGAGGTGGTGTTCTACCATGAAG-AAGTCCATAACAATCAGTCCTGTATTA
CTCAGATGCGAGTGTTGACTGAAGGATGAAGCT----ACATATTAGATTTGTAGCCTACGAGTACTGTCTAT--GGTACT
AACAAAAATCAGCGTGCACGGCTTAGGCCAGCTCAG-AAAAAACAGGGAGGGGTGAAGAAGACGCGTCGGGCATGGCGGC
CAGACTCTCACTGGATTTGGAGGGCTAGTGCAATGGTCGCTGCTA-----------------------------------
---------------------------------------------------GGTATGCAATGGGGATTTTTCTGTTGAGT
GCGTCTGGATGTGGAGGGC-GAGACGATGGGTGGGTGCATTTAAAGCCAGCCCGTCTACTCGCCGTTTGGAGACCATTGG
AGTTGATGGC
>SNPs
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S-------------------------S-----------------------------------------------------
----S----------------------------------S---------------------S-----S------------
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----------------------------------------------------------------S---------------
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-------------------------------------S------------------------------------------
------------------------------------------------------------------------S-------
------S----------------S--------------------------------------------------------
--S--------------------------------------S--------------------------------------
----------------------------------------------------SS--------------------------
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-------------------------------------------------------SS-----------------------
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-------------------------------------------------------------------S------------
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---------------------S----------------------------------------------------------
------------------------------------------------------------------------------S-
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------------S-S-----------------------------------------------------------------
---------------------------------------------------------------S----------------
---S-------S--------------------S---------------------S------S-SS-SSSSS---------
---------------------------------SSSS----------------S-----S--------------------
----S--------SS------------------------------S-S-------------------------------S
----------------------------S----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------
----------------------------------------------------S---------------------------
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>forward_933
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--------------------------------CAGCAAAGTTTATCCGGGCAT---------------------------
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>reverse_2453
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----------------------------------------------------TGTCTACTCGCCGTTTGGAG--------
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