Multiple sequence alignment - TraesCS1A01G024600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G024600 chr1A 100.000 3762 0 0 1 3762 12095542 12099303 0.000000e+00 6948.0
1 TraesCS1A01G024600 chr1D 84.969 3067 252 114 614 3579 10380302 10383260 0.000000e+00 2916.0
2 TraesCS1A01G024600 chr1D 83.117 154 10 10 1144 1296 167392425 167392287 3.940000e-25 126.0
3 TraesCS1A01G024600 chr1D 81.818 143 6 8 1186 1327 90163048 90162925 6.650000e-18 102.0
4 TraesCS1A01G024600 chr1D 95.556 45 2 0 1 45 10377535 10377579 5.210000e-09 73.1
5 TraesCS1A01G024600 chr1B 86.552 1398 114 39 1688 3044 15289079 15290443 0.000000e+00 1472.0
6 TraesCS1A01G024600 chr1B 81.201 633 57 32 516 1119 15287816 15288415 1.590000e-123 453.0
7 TraesCS1A01G024600 chr1B 96.903 226 6 1 3362 3587 15290670 15290894 9.860000e-101 377.0
8 TraesCS1A01G024600 chr1B 82.659 346 35 12 1 334 15287171 15287503 2.210000e-72 283.0
9 TraesCS1A01G024600 chr1B 86.339 183 11 6 3082 3250 15290438 15290620 1.780000e-43 187.0
10 TraesCS1A01G024600 chr1B 96.154 52 2 0 3711 3762 15290935 15290986 6.700000e-13 86.1
11 TraesCS1A01G024600 chr1B 82.727 110 2 6 329 422 15287535 15287643 8.660000e-12 82.4
12 TraesCS1A01G024600 chr3B 88.036 443 30 14 1532 1957 46931584 46931148 1.560000e-138 503.0
13 TraesCS1A01G024600 chr3B 87.838 444 30 13 1532 1957 46902305 46901868 2.020000e-137 499.0
14 TraesCS1A01G024600 chr3B 89.157 166 9 8 3565 3725 277029356 277029195 8.240000e-47 198.0
15 TraesCS1A01G024600 chr4D 79.851 670 70 31 1144 1779 183237925 183237287 2.680000e-116 429.0
16 TraesCS1A01G024600 chr3A 79.754 568 67 27 1111 1663 692034933 692035467 5.940000e-98 368.0
17 TraesCS1A01G024600 chr5D 79.961 519 59 25 1164 1666 448285707 448285218 1.290000e-89 340.0
18 TraesCS1A01G024600 chr5D 96.992 133 4 0 3582 3714 241844208 241844076 1.360000e-54 224.0
19 TraesCS1A01G024600 chr5D 96.296 135 5 0 3582 3716 115924518 115924652 4.890000e-54 222.0
20 TraesCS1A01G024600 chr7B 97.037 135 3 1 3583 3716 680907569 680907435 3.780000e-55 226.0
21 TraesCS1A01G024600 chr5B 97.015 134 3 1 3583 3715 431062126 431061993 1.360000e-54 224.0
22 TraesCS1A01G024600 chr7D 94.964 139 7 0 3578 3716 135760626 135760764 6.330000e-53 219.0
23 TraesCS1A01G024600 chr7D 92.517 147 11 0 3572 3718 94444634 94444488 1.060000e-50 211.0
24 TraesCS1A01G024600 chr5A 91.391 151 13 0 3586 3736 135538578 135538728 1.370000e-49 207.0
25 TraesCS1A01G024600 chr6D 91.892 148 11 1 3566 3712 403312417 403312270 4.930000e-49 206.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G024600 chr1A 12095542 12099303 3761 False 6948.000000 6948 100.0000 1 3762 1 chr1A.!!$F1 3761
1 TraesCS1A01G024600 chr1D 10377535 10383260 5725 False 1494.550000 2916 90.2625 1 3579 2 chr1D.!!$F1 3578
2 TraesCS1A01G024600 chr1B 15287171 15290986 3815 False 420.071429 1472 87.5050 1 3762 7 chr1B.!!$F1 3761
3 TraesCS1A01G024600 chr4D 183237287 183237925 638 True 429.000000 429 79.8510 1144 1779 1 chr4D.!!$R1 635
4 TraesCS1A01G024600 chr3A 692034933 692035467 534 False 368.000000 368 79.7540 1111 1663 1 chr3A.!!$F1 552

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
334 2425 0.039978 TTGTTTAACCGCATGCCACG 60.040 50.0 13.15 2.02 0.0 4.94 F
1156 3567 0.035458 CCTCTTGGCCGACAGTTCTT 59.965 55.0 0.00 0.00 0.0 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1184 3595 0.101399 CGGAGGAAGATCACTGGACG 59.899 60.0 0.0 0.0 0.00 4.79 R
3072 5778 0.179045 GGTGCGATTCTACCTGCCAT 60.179 55.0 0.0 0.0 34.11 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 3.092301 AGAAAGCTCAACCTTAATGGCC 58.908 45.455 0.00 0.00 40.22 5.36
89 2169 2.650322 GACCCAGGTCTCAAACAAACA 58.350 47.619 9.67 0.00 41.57 2.83
119 2203 6.292811 GCATGTACACATTGTTTTTCCTTTGG 60.293 38.462 0.00 0.00 33.61 3.28
159 2243 1.002011 GGCTCCCAAGTTCCCTCAC 60.002 63.158 0.00 0.00 0.00 3.51
186 2270 9.914834 AAAGGTGATTAACTATATGGCTAAACA 57.085 29.630 0.00 0.00 0.00 2.83
187 2271 8.904099 AGGTGATTAACTATATGGCTAAACAC 57.096 34.615 11.68 11.68 0.00 3.32
188 2272 8.491134 AGGTGATTAACTATATGGCTAAACACA 58.509 33.333 17.98 4.90 32.01 3.72
189 2273 9.284968 GGTGATTAACTATATGGCTAAACACAT 57.715 33.333 17.98 0.00 32.01 3.21
220 2311 3.509184 AGAAAGAGAAGCAAAAGGCCATC 59.491 43.478 5.01 0.00 46.50 3.51
236 2327 9.435688 AAAAGGCCATCAAGACAATTAATTAAC 57.564 29.630 5.01 0.00 0.00 2.01
270 2361 3.545703 AGAGAGACAAACAAACCTGGTG 58.454 45.455 0.00 0.00 0.00 4.17
278 2369 4.339247 ACAAACAAACCTGGTGATGAAGAG 59.661 41.667 17.02 8.14 0.00 2.85
284 2375 1.085091 CTGGTGATGAAGAGCACTGC 58.915 55.000 0.00 0.00 38.61 4.40
301 2392 2.727544 CGGCTAGCTCTCCTGCTC 59.272 66.667 15.72 0.00 42.97 4.26
303 2394 2.506957 GGCTAGCTCTCCTGCTCCC 61.507 68.421 15.72 0.00 42.97 4.30
325 2416 3.489047 CAGTTGCACCATTTGTTTAACCG 59.511 43.478 0.00 0.00 0.00 4.44
334 2425 0.039978 TTGTTTAACCGCATGCCACG 60.040 50.000 13.15 2.02 0.00 4.94
337 2428 1.167155 TTTAACCGCATGCCACGTGT 61.167 50.000 15.65 0.00 0.00 4.49
381 2515 4.082845 TGGTGACAACAAAGGTCAGAAAA 58.917 39.130 0.00 0.00 45.21 2.29
382 2516 4.709397 TGGTGACAACAAAGGTCAGAAAAT 59.291 37.500 0.00 0.00 45.21 1.82
383 2517 5.888724 TGGTGACAACAAAGGTCAGAAAATA 59.111 36.000 0.00 0.00 45.21 1.40
437 2582 7.016957 TCACATTAGGATAAGAGCAAGATGGAT 59.983 37.037 0.00 0.00 0.00 3.41
448 2593 5.131642 AGAGCAAGATGGATGAGACCAATAA 59.868 40.000 0.00 0.00 43.47 1.40
449 2594 5.759059 AGCAAGATGGATGAGACCAATAAA 58.241 37.500 0.00 0.00 43.47 1.40
450 2595 6.371278 AGCAAGATGGATGAGACCAATAAAT 58.629 36.000 0.00 0.00 43.47 1.40
451 2596 6.837568 AGCAAGATGGATGAGACCAATAAATT 59.162 34.615 0.00 0.00 43.47 1.82
452 2597 7.014038 AGCAAGATGGATGAGACCAATAAATTC 59.986 37.037 0.00 0.00 43.47 2.17
454 2599 9.565090 CAAGATGGATGAGACCAATAAATTCTA 57.435 33.333 0.00 0.00 43.47 2.10
459 2604 8.429641 TGGATGAGACCAATAAATTCTAGTACC 58.570 37.037 0.00 0.00 36.96 3.34
482 2627 2.512485 TTTTTGCACTGCACATGGAG 57.488 45.000 2.26 0.00 38.71 3.86
483 2628 1.689984 TTTTGCACTGCACATGGAGA 58.310 45.000 2.26 0.00 38.71 3.71
484 2629 1.913778 TTTGCACTGCACATGGAGAT 58.086 45.000 2.26 0.00 38.71 2.75
490 2635 4.096833 TGCACTGCACATGGAGATATTTTC 59.903 41.667 7.46 0.00 36.93 2.29
493 2638 6.263344 CACTGCACATGGAGATATTTTCTTG 58.737 40.000 7.46 0.00 36.93 3.02
558 2920 5.633830 ACAATTAGGACAGTTGCAATCAG 57.366 39.130 0.59 0.00 0.00 2.90
561 2923 2.486472 AGGACAGTTGCAATCAGGAG 57.514 50.000 0.59 0.00 0.00 3.69
563 2925 2.575279 AGGACAGTTGCAATCAGGAGAT 59.425 45.455 0.59 0.00 35.53 2.75
574 2936 4.497006 GCAATCAGGAGATCAAATGGTTCG 60.497 45.833 0.00 0.00 31.90 3.95
585 2947 3.311322 TCAAATGGTTCGTGTTGACAGTC 59.689 43.478 0.00 0.00 0.00 3.51
588 2950 2.276201 TGGTTCGTGTTGACAGTCAAG 58.724 47.619 16.68 5.50 37.00 3.02
589 2951 2.093921 TGGTTCGTGTTGACAGTCAAGA 60.094 45.455 16.68 12.79 37.00 3.02
590 2952 3.131396 GGTTCGTGTTGACAGTCAAGAT 58.869 45.455 16.68 0.00 37.00 2.40
592 2954 4.748102 GGTTCGTGTTGACAGTCAAGATAA 59.252 41.667 16.68 10.86 37.00 1.75
594 2956 6.073222 GGTTCGTGTTGACAGTCAAGATAATT 60.073 38.462 16.68 0.00 37.00 1.40
596 2958 7.812309 TCGTGTTGACAGTCAAGATAATTAG 57.188 36.000 16.68 4.86 37.00 1.73
601 2963 8.721478 TGTTGACAGTCAAGATAATTAGCTTTC 58.279 33.333 16.68 8.81 37.00 2.62
605 2967 6.825721 ACAGTCAAGATAATTAGCTTTCCTGG 59.174 38.462 26.77 13.93 34.09 4.45
608 2970 7.126421 AGTCAAGATAATTAGCTTTCCTGGAGA 59.874 37.037 13.18 3.65 27.90 3.71
609 2971 7.440856 GTCAAGATAATTAGCTTTCCTGGAGAG 59.559 40.741 13.18 9.79 27.90 3.20
616 2978 4.817318 AGCTTTCCTGGAGAGAACTAAG 57.183 45.455 17.76 7.90 0.00 2.18
623 2985 4.161189 TCCTGGAGAGAACTAAGCATTCTG 59.839 45.833 0.00 0.00 36.53 3.02
637 2999 0.541863 ATTCTGCCCTCACCTAACCG 59.458 55.000 0.00 0.00 0.00 4.44
639 3001 0.325296 TCTGCCCTCACCTAACCGAT 60.325 55.000 0.00 0.00 0.00 4.18
641 3003 0.539986 TGCCCTCACCTAACCGATTC 59.460 55.000 0.00 0.00 0.00 2.52
643 3005 1.497161 CCCTCACCTAACCGATTCCT 58.503 55.000 0.00 0.00 0.00 3.36
646 3008 3.646637 CCCTCACCTAACCGATTCCTATT 59.353 47.826 0.00 0.00 0.00 1.73
648 3010 5.306160 CCCTCACCTAACCGATTCCTATTAA 59.694 44.000 0.00 0.00 0.00 1.40
651 3013 5.901276 TCACCTAACCGATTCCTATTAAGGT 59.099 40.000 0.00 0.00 44.09 3.50
680 3044 4.021102 TCGCCATCCTTTTTCTTCTCTT 57.979 40.909 0.00 0.00 0.00 2.85
682 3046 4.216257 TCGCCATCCTTTTTCTTCTCTTTG 59.784 41.667 0.00 0.00 0.00 2.77
720 3091 1.533731 GTCATCGCACGGGAAGAAAAA 59.466 47.619 0.00 0.00 0.00 1.94
721 3092 1.804151 TCATCGCACGGGAAGAAAAAG 59.196 47.619 0.00 0.00 0.00 2.27
722 3093 1.804151 CATCGCACGGGAAGAAAAAGA 59.196 47.619 0.00 0.00 0.00 2.52
723 3094 1.956297 TCGCACGGGAAGAAAAAGAA 58.044 45.000 0.00 0.00 0.00 2.52
724 3095 2.290464 TCGCACGGGAAGAAAAAGAAA 58.710 42.857 0.00 0.00 0.00 2.52
725 3096 2.683867 TCGCACGGGAAGAAAAAGAAAA 59.316 40.909 0.00 0.00 0.00 2.29
726 3097 3.042887 CGCACGGGAAGAAAAAGAAAAG 58.957 45.455 0.00 0.00 0.00 2.27
727 3098 3.242936 CGCACGGGAAGAAAAAGAAAAGA 60.243 43.478 0.00 0.00 0.00 2.52
728 3099 4.290969 GCACGGGAAGAAAAAGAAAAGAG 58.709 43.478 0.00 0.00 0.00 2.85
803 3178 3.692101 CAGCCCGGTTTGTTTATATGTGA 59.308 43.478 0.00 0.00 0.00 3.58
804 3179 4.338118 CAGCCCGGTTTGTTTATATGTGAT 59.662 41.667 0.00 0.00 0.00 3.06
805 3180 4.338118 AGCCCGGTTTGTTTATATGTGATG 59.662 41.667 0.00 0.00 0.00 3.07
806 3181 4.097286 GCCCGGTTTGTTTATATGTGATGT 59.903 41.667 0.00 0.00 0.00 3.06
807 3182 5.577835 CCCGGTTTGTTTATATGTGATGTG 58.422 41.667 0.00 0.00 0.00 3.21
808 3183 5.355630 CCCGGTTTGTTTATATGTGATGTGA 59.644 40.000 0.00 0.00 0.00 3.58
913 3313 1.261480 GCTGAGGTGAACAGGAGAGA 58.739 55.000 0.00 0.00 36.09 3.10
914 3314 1.204467 GCTGAGGTGAACAGGAGAGAG 59.796 57.143 0.00 0.00 36.09 3.20
915 3315 2.801483 CTGAGGTGAACAGGAGAGAGA 58.199 52.381 0.00 0.00 0.00 3.10
947 3350 3.042871 AGAAGAGCAAGCAGTGAGAAG 57.957 47.619 0.00 0.00 0.00 2.85
955 3358 3.577667 CAAGCAGTGAGAAGTCTGAGAG 58.422 50.000 0.00 0.00 34.02 3.20
979 3382 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
990 3401 4.775236 AGAGAGAGAGAGAGAAGAAGAGC 58.225 47.826 0.00 0.00 0.00 4.09
1081 3492 2.133281 TGGCCAATCTCACCATCAAG 57.867 50.000 0.61 0.00 0.00 3.02
1089 3500 3.197790 CACCATCAAGCTCCCGCG 61.198 66.667 0.00 0.00 42.32 6.46
1124 3535 1.826385 AAGAACTCTTGGCCATTCCG 58.174 50.000 6.09 0.00 37.80 4.30
1125 3536 0.693049 AGAACTCTTGGCCATTCCGT 59.307 50.000 6.09 0.00 37.80 4.69
1131 3542 0.811281 CTTGGCCATTCCGTTCTTCC 59.189 55.000 6.09 0.00 37.80 3.46
1132 3543 0.610785 TTGGCCATTCCGTTCTTCCC 60.611 55.000 6.09 0.00 37.80 3.97
1133 3544 1.753078 GGCCATTCCGTTCTTCCCC 60.753 63.158 0.00 0.00 0.00 4.81
1156 3567 0.035458 CCTCTTGGCCGACAGTTCTT 59.965 55.000 0.00 0.00 0.00 2.52
1165 3576 1.466697 CCGACAGTTCTTCGCTCTCTC 60.467 57.143 0.00 0.00 35.06 3.20
1166 3577 1.466950 CGACAGTTCTTCGCTCTCTCT 59.533 52.381 0.00 0.00 0.00 3.10
1167 3578 2.095466 CGACAGTTCTTCGCTCTCTCTT 60.095 50.000 0.00 0.00 0.00 2.85
1168 3579 3.498082 GACAGTTCTTCGCTCTCTCTTC 58.502 50.000 0.00 0.00 0.00 2.87
1171 3582 4.038642 ACAGTTCTTCGCTCTCTCTTCTTT 59.961 41.667 0.00 0.00 0.00 2.52
1184 3595 4.646572 TCTCTTCTTTTTCTGCTTCTCCC 58.353 43.478 0.00 0.00 0.00 4.30
1196 3607 1.479709 CTTCTCCCGTCCAGTGATCT 58.520 55.000 0.00 0.00 0.00 2.75
1210 3621 2.503356 AGTGATCTTCCTCCGCATTTCT 59.497 45.455 0.00 0.00 0.00 2.52
1252 3663 2.360165 GGAAGCCATTGCCAGTTGATAG 59.640 50.000 0.00 0.00 38.69 2.08
1284 3695 1.399791 CGAATCTTTGGAAGGCTCTGC 59.600 52.381 0.00 0.00 0.00 4.26
1302 3713 2.689983 CTGCTTGGTTCTTGGTTCTTGT 59.310 45.455 0.00 0.00 0.00 3.16
1324 3735 2.677337 GGTGCTCTGCTCTCTCAAATTC 59.323 50.000 0.00 0.00 0.00 2.17
1349 3761 2.461637 CCCTCCTCCTCCCCCTTT 59.538 66.667 0.00 0.00 0.00 3.11
1378 3790 1.545841 CCCTGGTTTTACTGGCTTCC 58.454 55.000 0.00 0.00 0.00 3.46
1389 3801 3.394836 GGCTTCCGAGGAGTGGCT 61.395 66.667 11.39 0.00 0.00 4.75
1427 3839 2.039418 GCCAAAAACTTTCTGGGAGGT 58.961 47.619 0.00 0.00 0.00 3.85
1429 3841 3.118408 GCCAAAAACTTTCTGGGAGGTTT 60.118 43.478 0.00 0.00 35.64 3.27
1430 3842 4.441792 CCAAAAACTTTCTGGGAGGTTTG 58.558 43.478 0.00 0.00 34.45 2.93
1431 3843 4.081142 CCAAAAACTTTCTGGGAGGTTTGT 60.081 41.667 0.00 0.00 34.45 2.83
1432 3844 5.487433 CAAAAACTTTCTGGGAGGTTTGTT 58.513 37.500 0.00 0.00 34.45 2.83
1433 3845 5.755409 AAAACTTTCTGGGAGGTTTGTTT 57.245 34.783 0.00 0.00 33.03 2.83
1437 3849 1.398692 TCTGGGAGGTTTGTTTGTGC 58.601 50.000 0.00 0.00 0.00 4.57
1439 3851 0.032615 TGGGAGGTTTGTTTGTGCCT 60.033 50.000 0.00 0.00 0.00 4.75
1462 3874 7.882271 GCCTCATCTATCTTCTTGTTCCATTAT 59.118 37.037 0.00 0.00 0.00 1.28
1463 3875 9.790344 CCTCATCTATCTTCTTGTTCCATTATT 57.210 33.333 0.00 0.00 0.00 1.40
1487 3899 1.174712 GCAGGAGCAACAGAGGCAAA 61.175 55.000 0.00 0.00 41.58 3.68
1489 3901 1.682854 CAGGAGCAACAGAGGCAAAAA 59.317 47.619 0.00 0.00 0.00 1.94
1529 3944 2.028420 GCATCATGCAGGTACAGTGA 57.972 50.000 4.20 0.00 44.26 3.41
1603 4031 9.753674 AGATATGATGGTCTTTTAACCTTTTGA 57.246 29.630 0.00 0.00 40.20 2.69
1607 4035 7.666623 TGATGGTCTTTTAACCTTTTGATTCC 58.333 34.615 0.00 0.00 40.20 3.01
1608 4036 7.508977 TGATGGTCTTTTAACCTTTTGATTCCT 59.491 33.333 0.00 0.00 40.20 3.36
1629 4063 2.025589 GGAACCAGTAGTAGCAAGGC 57.974 55.000 0.00 0.00 0.00 4.35
1703 4346 4.392047 TGGGCTTATCTGCATATTGTCTG 58.608 43.478 0.00 0.00 34.04 3.51
1706 4349 5.059161 GGCTTATCTGCATATTGTCTGTGA 58.941 41.667 0.00 0.00 34.04 3.58
1776 4420 4.443315 CCACAAAAATGCCCTGAAAGTTCT 60.443 41.667 0.00 0.00 0.00 3.01
1788 4432 7.178983 TGCCCTGAAAGTTCTGATAAAATTCAT 59.821 33.333 0.00 0.00 0.00 2.57
1824 4470 3.360249 ACAAAATGCAGCTGTGAACTC 57.640 42.857 16.64 0.00 0.00 3.01
1836 4485 5.008415 CAGCTGTGAACTCACTGATTTTCTT 59.992 40.000 17.83 0.00 46.55 2.52
2010 4667 2.625737 CACTGCTTCGACATGAGGAAT 58.374 47.619 0.00 0.00 0.00 3.01
2025 4682 5.689383 TGAGGAATGCTGTAAGAACAAAC 57.311 39.130 0.00 0.00 34.49 2.93
2041 4705 3.123157 CAAACCATTGTGCATTTCCCA 57.877 42.857 0.00 0.00 0.00 4.37
2042 4706 3.474600 CAAACCATTGTGCATTTCCCAA 58.525 40.909 0.00 0.00 0.00 4.12
2074 4738 4.569943 TGAGTGGCTTCTCTTGATGTAAC 58.430 43.478 10.45 0.00 35.68 2.50
2077 4741 5.376625 AGTGGCTTCTCTTGATGTAACAAA 58.623 37.500 0.00 0.00 0.00 2.83
2079 4743 6.150140 AGTGGCTTCTCTTGATGTAACAAATC 59.850 38.462 0.00 0.00 0.00 2.17
2080 4744 6.150140 GTGGCTTCTCTTGATGTAACAAATCT 59.850 38.462 0.00 0.00 0.00 2.40
2081 4745 6.149973 TGGCTTCTCTTGATGTAACAAATCTG 59.850 38.462 0.00 0.00 0.00 2.90
2082 4746 6.026513 GCTTCTCTTGATGTAACAAATCTGC 58.973 40.000 0.00 0.00 0.00 4.26
2083 4747 6.348786 GCTTCTCTTGATGTAACAAATCTGCA 60.349 38.462 0.00 0.00 0.00 4.41
2084 4748 7.627939 GCTTCTCTTGATGTAACAAATCTGCAT 60.628 37.037 0.00 0.00 0.00 3.96
2085 4749 7.692460 TCTCTTGATGTAACAAATCTGCATT 57.308 32.000 0.00 0.00 0.00 3.56
2086 4750 8.114331 TCTCTTGATGTAACAAATCTGCATTT 57.886 30.769 0.00 0.00 31.91 2.32
2087 4751 8.239314 TCTCTTGATGTAACAAATCTGCATTTC 58.761 33.333 0.00 0.00 28.97 2.17
2183 4850 0.322456 CGACAGGGCATTTCAGGGAA 60.322 55.000 0.00 0.00 0.00 3.97
2185 4852 0.609131 ACAGGGCATTTCAGGGAACG 60.609 55.000 0.00 0.00 0.00 3.95
2231 4898 4.152607 GTGAAACTTCCATCTTCACTGC 57.847 45.455 6.87 0.00 43.57 4.40
2243 4910 3.664107 TCTTCACTGCCAGTAATGTCAC 58.336 45.455 0.00 0.00 0.00 3.67
2244 4911 3.070878 TCTTCACTGCCAGTAATGTCACA 59.929 43.478 0.00 0.00 0.00 3.58
2246 4913 3.138304 TCACTGCCAGTAATGTCACAAC 58.862 45.455 0.00 0.00 0.00 3.32
2247 4914 2.877786 CACTGCCAGTAATGTCACAACA 59.122 45.455 0.00 0.00 40.38 3.33
2287 4958 0.179009 ACCACATTGCAGCTCACTGT 60.179 50.000 0.00 4.20 46.30 3.55
2319 4993 3.790152 TGATCACAGATGAGGAAGTCG 57.210 47.619 0.00 0.00 38.57 4.18
2337 5011 0.108424 CGTCTTCTTCCAGAGCAGGG 60.108 60.000 0.00 0.00 0.00 4.45
2345 5019 4.798344 CAGAGCAGGGGCAGCAGG 62.798 72.222 0.00 0.00 44.61 4.85
2347 5021 4.357279 GAGCAGGGGCAGCAGGTT 62.357 66.667 0.00 0.00 44.61 3.50
2373 5047 3.135530 ACAAGGAGGCATATGAAGAGGAC 59.864 47.826 6.97 0.00 0.00 3.85
2394 5068 5.336531 GGACGACTCCTACTTTGAAGAATCA 60.337 44.000 0.00 0.00 33.07 2.57
2397 5071 5.457148 CGACTCCTACTTTGAAGAATCATCG 59.543 44.000 0.00 0.00 34.96 3.84
2411 5085 1.127343 TCATCGTACATCATGGGCCA 58.873 50.000 9.61 9.61 0.00 5.36
2433 5107 2.746142 GCCGGTTCCTGATGATCATTCA 60.746 50.000 10.14 8.43 36.00 2.57
2466 5140 0.247460 TCTCCCAGTTCATCTGCACG 59.753 55.000 0.00 0.00 42.38 5.34
2529 5206 1.890979 GGAGGATCATGCTGCACCG 60.891 63.158 3.57 0.00 36.25 4.94
2535 5212 2.913054 ATCATGCTGCACCGTCCTCG 62.913 60.000 3.57 0.00 0.00 4.63
2584 5261 1.843851 ACTGTTGAAGGTTGGGAGTGA 59.156 47.619 0.00 0.00 0.00 3.41
2592 5269 1.177401 GGTTGGGAGTGAAAGATGGC 58.823 55.000 0.00 0.00 0.00 4.40
2600 5277 3.117888 GGAGTGAAAGATGGCCCTGAATA 60.118 47.826 0.00 0.00 0.00 1.75
2630 5311 4.421365 GCTGACTGCCCCAAATGA 57.579 55.556 0.00 0.00 35.15 2.57
2668 5349 0.807496 GCAGGCTGAATCAGGTTGTC 59.193 55.000 20.86 0.00 31.21 3.18
2705 5386 3.587170 AAGGACCTCGAGGAGCGGT 62.587 63.158 37.69 16.34 41.41 5.68
2749 5430 3.126073 GCAGATGCTGATGACAACGATA 58.874 45.455 0.00 0.00 38.21 2.92
2812 5499 3.316501 AGCTAGGATTGCTCAGGATCTT 58.683 45.455 0.00 0.00 35.67 2.40
2813 5500 3.071312 AGCTAGGATTGCTCAGGATCTTG 59.929 47.826 0.00 0.00 35.67 3.02
2814 5501 3.806507 GCTAGGATTGCTCAGGATCTTGG 60.807 52.174 4.83 0.00 0.00 3.61
2815 5502 2.485659 AGGATTGCTCAGGATCTTGGA 58.514 47.619 4.83 0.00 0.00 3.53
2816 5503 2.848694 AGGATTGCTCAGGATCTTGGAA 59.151 45.455 4.83 0.00 0.00 3.53
2896 5591 5.198965 CCTGAATTGACCAATCTTGATCCT 58.801 41.667 0.00 0.00 0.00 3.24
2931 5626 6.888632 AGCTTTGGTTATCATCATGTCTCTTT 59.111 34.615 0.00 0.00 0.00 2.52
2981 5686 8.946085 TCTTTACATAATTGATTGACAGACACC 58.054 33.333 0.00 0.00 0.00 4.16
3007 5713 7.326789 CCACTCTTTTGCATTAAAGTACACATG 59.673 37.037 10.01 0.00 36.67 3.21
3031 5737 7.587629 TGATGCAAGAACATAAACTTTCTCAG 58.412 34.615 0.00 0.00 30.55 3.35
3058 5764 5.564550 AGAAGAAACATCCAGCAAGTACAT 58.435 37.500 0.00 0.00 0.00 2.29
3072 5778 6.475076 CAGCAAGTACATTGTACAAGCAAAAA 59.525 34.615 29.11 0.00 41.29 1.94
3073 5779 7.169645 CAGCAAGTACATTGTACAAGCAAAAAT 59.830 33.333 29.11 15.64 41.29 1.82
3083 5789 3.230134 ACAAGCAAAAATGGCAGGTAGA 58.770 40.909 0.00 0.00 0.00 2.59
3086 5792 4.725790 AGCAAAAATGGCAGGTAGAATC 57.274 40.909 0.00 0.00 0.00 2.52
3087 5793 3.129287 AGCAAAAATGGCAGGTAGAATCG 59.871 43.478 0.00 0.00 0.00 3.34
3147 5856 0.390340 TTGCGGCAGAAGAGCTACAG 60.390 55.000 1.67 0.00 34.17 2.74
3148 5857 1.520342 GCGGCAGAAGAGCTACAGG 60.520 63.158 0.00 0.00 34.17 4.00
3184 5906 5.507985 GCAAAACATAGGGCTATCCATTCAC 60.508 44.000 0.00 0.00 38.24 3.18
3224 5947 3.928992 CAGAACTGCGACAGTCATACATT 59.071 43.478 11.92 0.00 44.62 2.71
3232 5955 3.062639 CGACAGTCATACATTGTTCAGGC 59.937 47.826 0.41 0.00 0.00 4.85
3253 5977 6.587608 CAGGCTTAACAAATGAATTCCTTGAC 59.412 38.462 19.06 0.62 0.00 3.18
3273 5997 4.090819 GACTCCAAGGAGACCTAAGAAGT 58.909 47.826 22.34 0.00 44.53 3.01
3277 6001 4.090090 CCAAGGAGACCTAAGAAGTCAGA 58.910 47.826 0.00 0.00 36.68 3.27
3289 6015 6.766944 CCTAAGAAGTCAGATTGCAGATTCAT 59.233 38.462 0.00 0.00 0.00 2.57
3301 6027 5.876651 TGCAGATTCATGTAGACCATACT 57.123 39.130 0.00 0.00 30.71 2.12
3302 6028 5.604565 TGCAGATTCATGTAGACCATACTG 58.395 41.667 0.00 0.00 30.71 2.74
3334 6060 0.603707 CTTGCACCACGACCATGAGT 60.604 55.000 0.00 0.00 0.00 3.41
3340 6066 0.738762 CCACGACCATGAGTGCTCAG 60.739 60.000 7.96 0.00 43.61 3.35
3341 6067 0.037882 CACGACCATGAGTGCTCAGT 60.038 55.000 7.96 1.38 43.61 3.41
3342 6068 0.037882 ACGACCATGAGTGCTCAGTG 60.038 55.000 7.96 6.41 43.61 3.66
3343 6069 1.357258 CGACCATGAGTGCTCAGTGC 61.357 60.000 7.96 0.00 43.61 4.40
3344 6070 1.002868 ACCATGAGTGCTCAGTGCC 60.003 57.895 7.96 0.00 43.61 5.01
3345 6071 1.298993 CCATGAGTGCTCAGTGCCT 59.701 57.895 7.96 0.00 43.61 4.75
3346 6072 0.743701 CCATGAGTGCTCAGTGCCTC 60.744 60.000 7.96 6.19 43.61 4.70
3347 6073 0.036671 CATGAGTGCTCAGTGCCTCA 60.037 55.000 14.26 14.26 45.70 3.86
3348 6074 0.249676 ATGAGTGCTCAGTGCCTCAG 59.750 55.000 16.02 0.00 45.24 3.35
3363 6089 2.179427 CCTCAGTCCACCACATGTCTA 58.821 52.381 0.00 0.00 0.00 2.59
3462 6188 1.202486 AGTTCGTCGAAGTTCCAAGCA 60.202 47.619 8.18 0.00 0.00 3.91
3580 6313 8.696175 TGAAAACACATATGTATATAACGCTCG 58.304 33.333 8.32 0.00 38.45 5.03
3594 6327 4.762956 AACGCTCGTATATACTTCCTCC 57.237 45.455 11.05 0.00 0.00 4.30
3595 6328 2.740981 ACGCTCGTATATACTTCCTCCG 59.259 50.000 11.05 7.29 0.00 4.63
3596 6329 2.740981 CGCTCGTATATACTTCCTCCGT 59.259 50.000 11.05 0.00 0.00 4.69
3597 6330 3.181522 CGCTCGTATATACTTCCTCCGTC 60.182 52.174 11.05 0.00 0.00 4.79
3598 6331 3.126686 GCTCGTATATACTTCCTCCGTCC 59.873 52.174 11.05 0.00 0.00 4.79
3599 6332 3.679389 TCGTATATACTTCCTCCGTCCC 58.321 50.000 11.05 0.00 0.00 4.46
3603 6336 5.221303 CGTATATACTTCCTCCGTCCCAAAA 60.221 44.000 11.05 0.00 0.00 2.44
3604 6337 5.906772 ATATACTTCCTCCGTCCCAAAAT 57.093 39.130 0.00 0.00 0.00 1.82
3605 6338 2.971901 ACTTCCTCCGTCCCAAAATT 57.028 45.000 0.00 0.00 0.00 1.82
3606 6339 2.791655 ACTTCCTCCGTCCCAAAATTC 58.208 47.619 0.00 0.00 0.00 2.17
3607 6340 2.375509 ACTTCCTCCGTCCCAAAATTCT 59.624 45.455 0.00 0.00 0.00 2.40
3611 6344 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
3613 6346 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
3614 6347 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
3618 6351 7.014808 TCCGTCCCAAAATTCTTGTCTTAAATT 59.985 33.333 0.00 0.00 0.00 1.82
3619 6352 7.655732 CCGTCCCAAAATTCTTGTCTTAAATTT 59.344 33.333 0.00 0.00 34.86 1.82
3620 6353 8.487176 CGTCCCAAAATTCTTGTCTTAAATTTG 58.513 33.333 0.00 0.00 33.95 2.32
3621 6354 9.325198 GTCCCAAAATTCTTGTCTTAAATTTGT 57.675 29.630 0.00 0.00 33.95 2.83
3622 6355 9.541143 TCCCAAAATTCTTGTCTTAAATTTGTC 57.459 29.630 0.00 0.00 33.95 3.18
3634 6367 9.529325 TGTCTTAAATTTGTCTAGATACGGATG 57.471 33.333 0.00 0.00 0.00 3.51
3635 6368 9.530633 GTCTTAAATTTGTCTAGATACGGATGT 57.469 33.333 0.00 0.00 0.00 3.06
3651 6384 8.792831 ATACGGATGTATCTAACACTAAAACG 57.207 34.615 0.00 0.00 42.09 3.60
3652 6385 6.855836 ACGGATGTATCTAACACTAAAACGA 58.144 36.000 0.00 0.00 42.09 3.85
3653 6386 7.315142 ACGGATGTATCTAACACTAAAACGAA 58.685 34.615 0.00 0.00 42.09 3.85
3654 6387 7.814107 ACGGATGTATCTAACACTAAAACGAAA 59.186 33.333 0.00 0.00 42.09 3.46
3655 6388 8.106348 CGGATGTATCTAACACTAAAACGAAAC 58.894 37.037 0.00 0.00 42.09 2.78
3656 6389 9.148104 GGATGTATCTAACACTAAAACGAAACT 57.852 33.333 0.00 0.00 42.09 2.66
3666 6399 9.924650 AACACTAAAACGAAACTAGATACATCT 57.075 29.630 0.00 0.00 40.86 2.90
3667 6400 9.355215 ACACTAAAACGAAACTAGATACATCTG 57.645 33.333 0.00 0.00 37.76 2.90
3668 6401 9.355215 CACTAAAACGAAACTAGATACATCTGT 57.645 33.333 0.00 0.00 37.76 3.41
3699 6432 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
3700 6433 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
3701 6434 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
3702 6435 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
3703 6436 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
3704 6437 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
3705 6438 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
3706 6439 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
3707 6440 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
3708 6441 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
3709 6442 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
3710 6443 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
3711 6444 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
3712 6445 1.961133 TTTTGGGACGGAGGGAGTAT 58.039 50.000 0.00 0.00 0.00 2.12
3713 6446 2.852714 TTTGGGACGGAGGGAGTATA 57.147 50.000 0.00 0.00 0.00 1.47
3714 6447 3.339713 TTTGGGACGGAGGGAGTATAT 57.660 47.619 0.00 0.00 0.00 0.86
3715 6448 4.474303 TTTGGGACGGAGGGAGTATATA 57.526 45.455 0.00 0.00 0.00 0.86
3716 6449 3.446442 TGGGACGGAGGGAGTATATAC 57.554 52.381 4.60 4.60 0.00 1.47
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 0.528017 TCTGAGTGAGTGCTTAGCCG 59.472 55.000 0.29 0.00 0.00 5.52
89 2169 4.916983 AAACAATGTGTACATGCAGTGT 57.083 36.364 12.23 12.23 44.22 3.55
119 2203 2.024414 AGCCAAGTTGGAAAGTGACAC 58.976 47.619 26.52 4.19 40.96 3.67
193 2277 6.127196 TGGCCTTTTGCTTCTCTTTCTAAAAA 60.127 34.615 3.32 0.00 40.92 1.94
194 2278 5.362430 TGGCCTTTTGCTTCTCTTTCTAAAA 59.638 36.000 3.32 0.00 40.92 1.52
195 2279 4.892934 TGGCCTTTTGCTTCTCTTTCTAAA 59.107 37.500 3.32 0.00 40.92 1.85
196 2280 4.469657 TGGCCTTTTGCTTCTCTTTCTAA 58.530 39.130 3.32 0.00 40.92 2.10
197 2281 4.098914 TGGCCTTTTGCTTCTCTTTCTA 57.901 40.909 3.32 0.00 40.92 2.10
236 2327 6.071672 TGTTTGTCTCTCTCCTGATCTAACTG 60.072 42.308 0.00 0.00 0.00 3.16
250 2341 3.541632 TCACCAGGTTTGTTTGTCTCTC 58.458 45.455 0.00 0.00 0.00 3.20
270 2361 0.179100 TAGCCGCAGTGCTCTTCATC 60.179 55.000 14.33 0.00 41.68 2.92
278 2369 2.584694 GAGAGCTAGCCGCAGTGC 60.585 66.667 12.13 4.58 42.61 4.40
284 2375 2.727544 GAGCAGGAGAGCTAGCCG 59.272 66.667 12.13 0.00 46.75 5.52
296 2387 2.113774 TGGTGCAACTGGGAGCAG 59.886 61.111 2.04 0.00 40.60 4.24
299 2390 1.331214 ACAAATGGTGCAACTGGGAG 58.669 50.000 2.04 0.00 36.74 4.30
301 2392 2.618442 AAACAAATGGTGCAACTGGG 57.382 45.000 2.04 0.00 36.74 4.45
303 2394 3.489047 CGGTTAAACAAATGGTGCAACTG 59.511 43.478 2.04 0.00 36.74 3.16
334 2425 0.233848 CGTTGCCTTGTACGGAACAC 59.766 55.000 4.93 0.00 38.00 3.32
337 2428 1.500512 GCACGTTGCCTTGTACGGAA 61.501 55.000 0.00 0.00 41.81 4.30
381 2515 2.108776 TGGATTAAGCAGGCAGGCATAT 59.891 45.455 0.00 0.00 35.83 1.78
382 2516 1.494296 TGGATTAAGCAGGCAGGCATA 59.506 47.619 0.00 0.00 35.83 3.14
383 2517 0.259647 TGGATTAAGCAGGCAGGCAT 59.740 50.000 0.00 0.00 35.83 4.40
463 2608 2.030371 TCTCCATGTGCAGTGCAAAAA 58.970 42.857 21.67 9.21 41.47 1.94
465 2610 1.913778 ATCTCCATGTGCAGTGCAAA 58.086 45.000 21.67 16.46 41.47 3.68
466 2611 2.785540 TATCTCCATGTGCAGTGCAA 57.214 45.000 21.67 10.86 41.47 4.08
468 2613 4.337555 AGAAAATATCTCCATGTGCAGTGC 59.662 41.667 8.58 8.58 30.46 4.40
470 2615 5.163581 GCAAGAAAATATCTCCATGTGCAGT 60.164 40.000 0.00 0.00 37.04 4.40
472 2617 4.705991 TGCAAGAAAATATCTCCATGTGCA 59.294 37.500 0.00 0.00 41.99 4.57
473 2618 5.252969 TGCAAGAAAATATCTCCATGTGC 57.747 39.130 0.00 0.00 37.42 4.57
546 2898 5.340803 CATTTGATCTCCTGATTGCAACTG 58.659 41.667 0.00 0.14 32.19 3.16
558 2920 3.751175 TCAACACGAACCATTTGATCTCC 59.249 43.478 0.00 0.00 0.00 3.71
561 2923 4.024048 ACTGTCAACACGAACCATTTGATC 60.024 41.667 0.00 0.00 30.96 2.92
563 2925 3.275143 ACTGTCAACACGAACCATTTGA 58.725 40.909 0.00 0.00 0.00 2.69
574 2936 7.602517 AGCTAATTATCTTGACTGTCAACAC 57.397 36.000 18.69 0.00 32.21 3.32
585 2947 7.504403 TCTCTCCAGGAAAGCTAATTATCTTG 58.496 38.462 2.45 0.00 0.00 3.02
588 2950 7.505258 AGTTCTCTCCAGGAAAGCTAATTATC 58.495 38.462 0.00 0.00 0.00 1.75
589 2951 7.444703 AGTTCTCTCCAGGAAAGCTAATTAT 57.555 36.000 0.00 0.00 0.00 1.28
590 2952 6.875972 AGTTCTCTCCAGGAAAGCTAATTA 57.124 37.500 0.00 0.00 0.00 1.40
592 2954 6.631540 GCTTAGTTCTCTCCAGGAAAGCTAAT 60.632 42.308 11.20 0.00 0.00 1.73
594 2956 4.160626 GCTTAGTTCTCTCCAGGAAAGCTA 59.839 45.833 11.20 0.59 0.00 3.32
596 2958 3.266636 GCTTAGTTCTCTCCAGGAAAGC 58.733 50.000 4.39 4.39 0.00 3.51
601 2963 4.440880 CAGAATGCTTAGTTCTCTCCAGG 58.559 47.826 0.00 0.00 33.82 4.45
623 2985 0.179054 GGAATCGGTTAGGTGAGGGC 60.179 60.000 0.00 0.00 0.00 5.19
637 2999 7.132863 GCGAAAATGACACCTTAATAGGAATC 58.867 38.462 0.00 0.00 45.05 2.52
639 3001 5.355910 GGCGAAAATGACACCTTAATAGGAA 59.644 40.000 0.00 0.00 45.05 3.36
643 3005 5.298276 GGATGGCGAAAATGACACCTTAATA 59.702 40.000 0.00 0.00 0.00 0.98
646 3008 3.013921 GGATGGCGAAAATGACACCTTA 58.986 45.455 0.00 0.00 0.00 2.69
648 3010 1.004745 AGGATGGCGAAAATGACACCT 59.995 47.619 0.00 0.00 0.00 4.00
651 3013 4.280677 AGAAAAAGGATGGCGAAAATGACA 59.719 37.500 0.00 0.00 0.00 3.58
680 3044 3.870419 GACATGTTCAAAAGCAAAGCCAA 59.130 39.130 0.00 0.00 0.00 4.52
682 3046 3.456280 TGACATGTTCAAAAGCAAAGCC 58.544 40.909 0.00 0.00 0.00 4.35
720 3091 5.123979 GGCCACACGAATATTTCTCTTTTCT 59.876 40.000 0.00 0.00 0.00 2.52
721 3092 5.106317 TGGCCACACGAATATTTCTCTTTTC 60.106 40.000 0.00 0.00 0.00 2.29
722 3093 4.764823 TGGCCACACGAATATTTCTCTTTT 59.235 37.500 0.00 0.00 0.00 2.27
723 3094 4.156008 GTGGCCACACGAATATTTCTCTTT 59.844 41.667 31.23 0.00 37.94 2.52
724 3095 3.689649 GTGGCCACACGAATATTTCTCTT 59.310 43.478 31.23 0.00 37.94 2.85
725 3096 3.270877 GTGGCCACACGAATATTTCTCT 58.729 45.455 31.23 0.00 37.94 3.10
726 3097 3.675467 GTGGCCACACGAATATTTCTC 57.325 47.619 31.23 0.00 37.94 2.87
804 3179 2.371306 CCTCATGTGGCATTCATCACA 58.629 47.619 0.00 0.00 46.15 3.58
825 3200 2.046507 GGTGGGTCAGCAGAGCAG 60.047 66.667 10.61 0.00 43.97 4.24
826 3201 3.640407 GGGTGGGTCAGCAGAGCA 61.640 66.667 10.61 0.00 43.97 4.26
827 3202 3.640407 TGGGTGGGTCAGCAGAGC 61.640 66.667 0.00 0.00 41.49 4.09
828 3203 2.348998 GTGGGTGGGTCAGCAGAG 59.651 66.667 0.00 0.00 33.07 3.35
829 3204 3.249189 GGTGGGTGGGTCAGCAGA 61.249 66.667 0.00 0.00 33.07 4.26
830 3205 4.351054 GGGTGGGTGGGTCAGCAG 62.351 72.222 0.00 0.00 34.64 4.24
849 3234 2.187424 GCAGAGCAGAGCAGGGAG 59.813 66.667 0.00 0.00 0.00 4.30
850 3235 3.397439 GGCAGAGCAGAGCAGGGA 61.397 66.667 0.00 0.00 0.00 4.20
913 3313 6.818142 GCTTGCTCTTCTATTCTTCTTCTTCT 59.182 38.462 0.00 0.00 0.00 2.85
914 3314 6.593382 TGCTTGCTCTTCTATTCTTCTTCTTC 59.407 38.462 0.00 0.00 0.00 2.87
915 3315 6.471146 TGCTTGCTCTTCTATTCTTCTTCTT 58.529 36.000 0.00 0.00 0.00 2.52
947 3350 4.646945 TCTCTCTCTCTCTCTCTCTCAGAC 59.353 50.000 0.00 0.00 0.00 3.51
955 3358 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
979 3382 3.096092 TCTCCTCCTTGCTCTTCTTCTC 58.904 50.000 0.00 0.00 0.00 2.87
990 3401 0.179936 GCACCTCCATCTCCTCCTTG 59.820 60.000 0.00 0.00 0.00 3.61
1068 3479 0.467384 CGGGAGCTTGATGGTGAGAT 59.533 55.000 0.00 0.00 0.00 2.75
1069 3480 1.900351 CGGGAGCTTGATGGTGAGA 59.100 57.895 0.00 0.00 0.00 3.27
1089 3500 0.617820 TCTTGCAGAGACCCCTACCC 60.618 60.000 0.00 0.00 0.00 3.69
1132 3543 3.787001 GTCGGCCAAGAGGAGGGG 61.787 72.222 2.24 0.00 36.89 4.79
1133 3544 3.003173 TGTCGGCCAAGAGGAGGG 61.003 66.667 2.24 0.00 36.89 4.30
1136 3547 0.832135 AGAACTGTCGGCCAAGAGGA 60.832 55.000 2.24 0.00 36.89 3.71
1156 3567 3.006323 AGCAGAAAAAGAAGAGAGAGCGA 59.994 43.478 0.00 0.00 0.00 4.93
1165 3576 3.142174 ACGGGAGAAGCAGAAAAAGAAG 58.858 45.455 0.00 0.00 0.00 2.85
1166 3577 3.139077 GACGGGAGAAGCAGAAAAAGAA 58.861 45.455 0.00 0.00 0.00 2.52
1167 3578 2.550208 GGACGGGAGAAGCAGAAAAAGA 60.550 50.000 0.00 0.00 0.00 2.52
1168 3579 1.807142 GGACGGGAGAAGCAGAAAAAG 59.193 52.381 0.00 0.00 0.00 2.27
1171 3582 0.321671 CTGGACGGGAGAAGCAGAAA 59.678 55.000 0.00 0.00 0.00 2.52
1184 3595 0.101399 CGGAGGAAGATCACTGGACG 59.899 60.000 0.00 0.00 0.00 4.79
1233 3644 1.753073 GCTATCAACTGGCAATGGCTT 59.247 47.619 8.59 0.00 40.87 4.35
1244 3655 3.197766 TCGATCAAACAGGGCTATCAACT 59.802 43.478 0.00 0.00 0.00 3.16
1246 3657 3.904800 TCGATCAAACAGGGCTATCAA 57.095 42.857 0.00 0.00 0.00 2.57
1252 3663 3.428045 CCAAAGATTCGATCAAACAGGGC 60.428 47.826 0.00 0.00 0.00 5.19
1284 3695 3.023832 ACCACAAGAACCAAGAACCAAG 58.976 45.455 0.00 0.00 0.00 3.61
1302 3713 1.051008 TTTGAGAGAGCAGAGCACCA 58.949 50.000 0.00 0.00 0.00 4.17
1346 3758 2.670148 CCAGGGGAGACGGGGAAAG 61.670 68.421 0.00 0.00 0.00 2.62
1349 3761 2.994912 AAAACCAGGGGAGACGGGGA 62.995 60.000 0.00 0.00 0.00 4.81
1389 3801 1.308069 GCCCAGAGATCAAAGCGCAA 61.308 55.000 11.47 0.00 0.00 4.85
1394 3806 3.575687 AGTTTTTGGCCCAGAGATCAAAG 59.424 43.478 0.00 0.00 31.89 2.77
1427 3839 6.240894 AGAAGATAGATGAGGCACAAACAAA 58.759 36.000 0.00 0.00 0.00 2.83
1429 3841 5.426689 AGAAGATAGATGAGGCACAAACA 57.573 39.130 0.00 0.00 0.00 2.83
1430 3842 5.645497 ACAAGAAGATAGATGAGGCACAAAC 59.355 40.000 0.00 0.00 0.00 2.93
1431 3843 5.809001 ACAAGAAGATAGATGAGGCACAAA 58.191 37.500 0.00 0.00 0.00 2.83
1432 3844 5.426689 ACAAGAAGATAGATGAGGCACAA 57.573 39.130 0.00 0.00 0.00 3.33
1433 3845 5.423015 GAACAAGAAGATAGATGAGGCACA 58.577 41.667 0.00 0.00 0.00 4.57
1462 3874 2.550855 CCTCTGTTGCTCCTGCTTGTAA 60.551 50.000 0.00 0.00 40.48 2.41
1463 3875 1.002430 CCTCTGTTGCTCCTGCTTGTA 59.998 52.381 0.00 0.00 40.48 2.41
1464 3876 0.250640 CCTCTGTTGCTCCTGCTTGT 60.251 55.000 0.00 0.00 40.48 3.16
1465 3877 1.584380 GCCTCTGTTGCTCCTGCTTG 61.584 60.000 0.00 0.00 40.48 4.01
1487 3899 6.827762 TGCATCCCTGAAAACAAGAAATTTTT 59.172 30.769 0.00 0.00 29.44 1.94
1489 3901 5.927819 TGCATCCCTGAAAACAAGAAATTT 58.072 33.333 0.00 0.00 0.00 1.82
1490 3902 5.549742 TGCATCCCTGAAAACAAGAAATT 57.450 34.783 0.00 0.00 0.00 1.82
1491 3903 5.246656 TGATGCATCCCTGAAAACAAGAAAT 59.753 36.000 23.67 0.00 0.00 2.17
1496 3909 3.368635 GCATGATGCATCCCTGAAAACAA 60.369 43.478 23.67 1.25 44.26 2.83
1520 3935 2.166664 AGAGCCGATCTTTCACTGTACC 59.833 50.000 0.00 0.00 32.99 3.34
1521 3936 3.182967 CAGAGCCGATCTTTCACTGTAC 58.817 50.000 0.00 0.00 35.47 2.90
1522 3937 2.417379 GCAGAGCCGATCTTTCACTGTA 60.417 50.000 0.00 0.00 35.47 2.74
1523 3938 1.674221 GCAGAGCCGATCTTTCACTGT 60.674 52.381 0.00 0.00 35.47 3.55
1525 3940 0.610174 TGCAGAGCCGATCTTTCACT 59.390 50.000 0.00 0.00 35.47 3.41
1526 3941 0.723981 GTGCAGAGCCGATCTTTCAC 59.276 55.000 0.00 1.45 35.47 3.18
1527 3942 0.321346 TGTGCAGAGCCGATCTTTCA 59.679 50.000 0.00 0.00 35.47 2.69
1528 3943 1.396301 CTTGTGCAGAGCCGATCTTTC 59.604 52.381 0.00 0.00 35.47 2.62
1529 3944 1.446907 CTTGTGCAGAGCCGATCTTT 58.553 50.000 0.00 0.00 35.47 2.52
1594 4022 3.239449 GGTTCCCAGGAATCAAAAGGTT 58.761 45.455 4.76 0.00 35.46 3.50
1608 4036 1.906574 CCTTGCTACTACTGGTTCCCA 59.093 52.381 0.00 0.00 0.00 4.37
1646 4080 1.221635 TCCCTCTCTCCCTCTCTCTG 58.778 60.000 0.00 0.00 0.00 3.35
1706 4349 0.403271 AAGCTGTGAGCCAACTGGAT 59.597 50.000 0.00 0.00 43.77 3.41
1788 4432 7.755591 TGCATTTTGTTTTTCAACTGCATTTA 58.244 26.923 10.71 0.00 43.59 1.40
1799 4443 5.063817 AGTTCACAGCTGCATTTTGTTTTTC 59.936 36.000 15.27 0.00 0.00 2.29
1805 4449 3.047796 GTGAGTTCACAGCTGCATTTTG 58.952 45.455 15.27 4.03 45.75 2.44
1824 4470 6.591062 CCTCTGAGAAGAGAAGAAAATCAGTG 59.409 42.308 6.17 0.00 38.13 3.66
1836 4485 2.593925 TCAGTGCCTCTGAGAAGAGA 57.406 50.000 6.17 0.00 46.77 3.10
1929 4586 1.565759 TCAATGTAGCAGAAGGGGCAT 59.434 47.619 0.00 0.00 0.00 4.40
2010 4667 4.736168 GCACAATGGTTTGTTCTTACAGCA 60.736 41.667 0.00 0.00 43.57 4.41
2041 4705 3.009916 AGAAGCCACTCAATCACCAGATT 59.990 43.478 0.00 0.00 45.16 2.40
2042 4706 2.575279 AGAAGCCACTCAATCACCAGAT 59.425 45.455 0.00 0.00 35.53 2.90
2053 4717 4.569943 TGTTACATCAAGAGAAGCCACTC 58.430 43.478 0.22 0.22 37.19 3.51
2074 4738 3.380637 CCAGAGAGGGAAATGCAGATTTG 59.619 47.826 0.00 0.00 31.58 2.32
2077 4741 2.092538 CACCAGAGAGGGAAATGCAGAT 60.093 50.000 0.00 0.00 43.89 2.90
2079 4743 1.280133 TCACCAGAGAGGGAAATGCAG 59.720 52.381 0.00 0.00 43.89 4.41
2080 4744 1.361204 TCACCAGAGAGGGAAATGCA 58.639 50.000 0.00 0.00 43.89 3.96
2081 4745 2.686915 CAATCACCAGAGAGGGAAATGC 59.313 50.000 0.00 0.00 43.89 3.56
2082 4746 4.197750 CTCAATCACCAGAGAGGGAAATG 58.802 47.826 0.00 0.00 43.89 2.32
2083 4747 3.848975 ACTCAATCACCAGAGAGGGAAAT 59.151 43.478 0.00 0.00 43.89 2.17
2084 4748 3.008375 CACTCAATCACCAGAGAGGGAAA 59.992 47.826 0.00 0.00 43.89 3.13
2085 4749 2.568956 CACTCAATCACCAGAGAGGGAA 59.431 50.000 0.00 0.00 43.89 3.97
2086 4750 2.182827 CACTCAATCACCAGAGAGGGA 58.817 52.381 0.00 0.00 43.89 4.20
2087 4751 1.209019 CCACTCAATCACCAGAGAGGG 59.791 57.143 0.00 0.00 43.89 4.30
2166 4833 0.609131 CGTTCCCTGAAATGCCCTGT 60.609 55.000 0.00 0.00 0.00 4.00
2168 4835 1.000896 CCGTTCCCTGAAATGCCCT 60.001 57.895 0.00 0.00 0.00 5.19
2183 4850 1.595382 GAGTTGCTGTGAGTGCCGT 60.595 57.895 0.00 0.00 0.00 5.68
2185 4852 0.590195 CTTGAGTTGCTGTGAGTGCC 59.410 55.000 0.00 0.00 0.00 5.01
2220 4887 4.093998 GTGACATTACTGGCAGTGAAGATG 59.906 45.833 29.65 25.03 42.49 2.90
2231 4898 3.304659 GCCTGTTGTTGTGACATTACTGG 60.305 47.826 11.22 11.22 38.05 4.00
2243 4910 3.850374 GCAAAATGCAATGCCTGTTGTTG 60.850 43.478 13.51 6.18 44.26 3.33
2244 4911 2.291190 GCAAAATGCAATGCCTGTTGTT 59.709 40.909 13.51 0.00 44.26 2.83
2246 4913 2.604969 GCAAAATGCAATGCCTGTTG 57.395 45.000 8.74 8.74 44.26 3.33
2287 4958 5.419471 TCATCTGTGATCAAAATGGCATTGA 59.581 36.000 14.47 9.82 40.76 2.57
2319 4993 0.251634 CCCCTGCTCTGGAAGAAGAC 59.748 60.000 0.00 0.00 46.34 3.01
2331 5005 4.357279 GAACCTGCTGCCCCTGCT 62.357 66.667 0.00 0.00 38.71 4.24
2337 5011 1.239968 CCTTGTCAGAACCTGCTGCC 61.240 60.000 0.00 0.00 35.86 4.85
2345 5019 4.142609 TCATATGCCTCCTTGTCAGAAC 57.857 45.455 0.00 0.00 0.00 3.01
2347 5021 4.033009 TCTTCATATGCCTCCTTGTCAGA 58.967 43.478 0.00 0.00 0.00 3.27
2373 5047 5.457148 CGATGATTCTTCAAAGTAGGAGTCG 59.543 44.000 1.09 0.00 34.96 4.18
2394 5068 0.250467 GCTGGCCCATGATGTACGAT 60.250 55.000 0.00 0.00 0.00 3.73
2397 5071 1.893808 CGGCTGGCCCATGATGTAC 60.894 63.158 0.00 0.00 0.00 2.90
2411 5085 1.135094 ATGATCATCAGGAACCGGCT 58.865 50.000 0.00 0.00 0.00 5.52
2433 5107 1.305718 GGAGAGCAGAGGGTCAGGT 60.306 63.158 0.00 0.00 43.97 4.00
2529 5206 1.698506 ACCTCTGATCATCCGAGGAC 58.301 55.000 27.21 0.00 45.67 3.85
2535 5212 6.105333 GCACTAATCATACCTCTGATCATCC 58.895 44.000 0.00 0.00 34.79 3.51
2584 5261 4.870636 TGTTCATATTCAGGGCCATCTTT 58.129 39.130 6.18 0.00 0.00 2.52
2592 5269 3.068590 GCCACCATTGTTCATATTCAGGG 59.931 47.826 0.00 0.00 0.00 4.45
2600 5277 2.165167 CAGTCAGCCACCATTGTTCAT 58.835 47.619 0.00 0.00 0.00 2.57
2622 5303 3.629087 AGAAGGAAGCAGATCATTTGGG 58.371 45.455 0.00 0.00 0.00 4.12
2630 5311 1.817447 GCAAGCAAGAAGGAAGCAGAT 59.183 47.619 0.00 0.00 0.00 2.90
2687 5368 2.756283 CCGCTCCTCGAGGTCCTT 60.756 66.667 30.17 0.00 41.67 3.36
2705 5386 1.301401 CAAACTCGACCCTCCGCAA 60.301 57.895 0.00 0.00 0.00 4.85
2743 5424 3.914426 AATCAGTCCCAAGCTATCGTT 57.086 42.857 0.00 0.00 0.00 3.85
2749 5430 2.441001 CCTGGATAATCAGTCCCAAGCT 59.559 50.000 0.00 0.00 34.76 3.74
2813 5500 4.320608 TCTCAACAAAAATGGCACTTCC 57.679 40.909 0.00 0.00 0.00 3.46
2814 5501 5.984926 TCAATCTCAACAAAAATGGCACTTC 59.015 36.000 0.00 0.00 0.00 3.01
2815 5502 5.754890 GTCAATCTCAACAAAAATGGCACTT 59.245 36.000 0.00 0.00 0.00 3.16
2816 5503 5.291971 GTCAATCTCAACAAAAATGGCACT 58.708 37.500 0.00 0.00 0.00 4.40
2847 5538 4.471747 TCCAAGGTTGCAGGTATACATGTA 59.528 41.667 18.02 11.61 0.00 2.29
2855 5546 2.238646 CAGGTATCCAAGGTTGCAGGTA 59.761 50.000 0.00 0.00 0.00 3.08
2917 5612 4.356436 TCTCCTGGAAAGAGACATGATGA 58.644 43.478 0.00 0.00 35.46 2.92
2919 5614 5.495640 GTTTCTCCTGGAAAGAGACATGAT 58.504 41.667 0.00 0.00 43.59 2.45
2931 5626 1.420138 GTCCAACTGGTTTCTCCTGGA 59.580 52.381 0.00 0.00 36.23 3.86
2981 5686 6.734137 TGTGTACTTTAATGCAAAAGAGTGG 58.266 36.000 16.01 0.00 38.50 4.00
3007 5713 6.525976 GCTGAGAAAGTTTATGTTCTTGCATC 59.474 38.462 0.00 0.00 34.23 3.91
3031 5737 3.648339 TGCTGGATGTTTCTTCTTTGC 57.352 42.857 0.00 0.00 0.00 3.68
3058 5764 3.133721 ACCTGCCATTTTTGCTTGTACAA 59.866 39.130 8.28 8.28 0.00 2.41
3072 5778 0.179045 GGTGCGATTCTACCTGCCAT 60.179 55.000 0.00 0.00 34.11 4.40
3073 5779 1.220749 GGTGCGATTCTACCTGCCA 59.779 57.895 0.00 0.00 34.11 4.92
3083 5789 9.814899 TTATTTTTGATCAAATATGGTGCGATT 57.185 25.926 25.43 8.21 30.40 3.34
3086 5792 9.033481 ACATTATTTTTGATCAAATATGGTGCG 57.967 29.630 25.43 15.22 30.40 5.34
3147 5856 1.177401 GTTTTGCAGGATCCACTCCC 58.823 55.000 15.82 0.00 46.27 4.30
3148 5857 1.909700 TGTTTTGCAGGATCCACTCC 58.090 50.000 15.82 0.00 45.33 3.85
3184 5906 7.272084 GCAGTTCTGTCATTTGCAAAACTATAG 59.728 37.037 17.19 11.67 34.99 1.31
3224 5947 6.267471 AGGAATTCATTTGTTAAGCCTGAACA 59.733 34.615 7.93 0.00 35.03 3.18
3232 5955 7.885297 TGGAGTCAAGGAATTCATTTGTTAAG 58.115 34.615 16.71 1.82 0.00 1.85
3253 5977 4.090090 TGACTTCTTAGGTCTCCTTGGAG 58.910 47.826 10.28 10.28 34.61 3.86
3259 5983 4.081420 TGCAATCTGACTTCTTAGGTCTCC 60.081 45.833 0.00 0.00 35.04 3.71
3260 5984 5.078411 TGCAATCTGACTTCTTAGGTCTC 57.922 43.478 0.00 0.00 35.04 3.36
3265 5989 7.280428 ACATGAATCTGCAATCTGACTTCTTAG 59.720 37.037 0.00 0.00 0.00 2.18
3266 5990 7.108194 ACATGAATCTGCAATCTGACTTCTTA 58.892 34.615 0.00 0.00 0.00 2.10
3267 5991 5.944599 ACATGAATCTGCAATCTGACTTCTT 59.055 36.000 0.00 0.00 0.00 2.52
3273 5997 5.104817 TGGTCTACATGAATCTGCAATCTGA 60.105 40.000 0.00 0.00 0.00 3.27
3277 6001 6.709397 CAGTATGGTCTACATGAATCTGCAAT 59.291 38.462 0.00 0.00 40.82 3.56
3334 6060 1.838396 TGGACTGAGGCACTGAGCA 60.838 57.895 0.00 0.00 45.82 4.26
3340 6066 0.957395 CATGTGGTGGACTGAGGCAC 60.957 60.000 0.00 0.00 0.00 5.01
3341 6067 1.376086 CATGTGGTGGACTGAGGCA 59.624 57.895 0.00 0.00 0.00 4.75
3342 6068 0.674895 GACATGTGGTGGACTGAGGC 60.675 60.000 1.15 0.00 0.00 4.70
3343 6069 0.979665 AGACATGTGGTGGACTGAGG 59.020 55.000 1.15 0.00 0.00 3.86
3344 6070 3.092301 TCTAGACATGTGGTGGACTGAG 58.908 50.000 1.15 0.00 0.00 3.35
3345 6071 3.169512 TCTAGACATGTGGTGGACTGA 57.830 47.619 1.15 0.00 0.00 3.41
3346 6072 3.961480 TTCTAGACATGTGGTGGACTG 57.039 47.619 1.15 0.00 0.00 3.51
3347 6073 5.395768 GCTATTTCTAGACATGTGGTGGACT 60.396 44.000 1.15 0.00 0.00 3.85
3348 6074 4.811557 GCTATTTCTAGACATGTGGTGGAC 59.188 45.833 1.15 0.00 0.00 4.02
3363 6089 2.606795 GCGATCGAGAGCAGCTATTTCT 60.607 50.000 21.57 0.00 0.00 2.52
3462 6188 4.162320 ACAGGTGACTATTCGGTCAATGAT 59.838 41.667 13.96 1.98 46.00 2.45
3575 6308 2.740981 ACGGAGGAAGTATATACGAGCG 59.259 50.000 7.23 0.00 0.00 5.03
3580 6313 5.796424 TTTGGGACGGAGGAAGTATATAC 57.204 43.478 4.60 4.60 0.00 1.47
3587 6320 3.073274 AGAATTTTGGGACGGAGGAAG 57.927 47.619 0.00 0.00 0.00 3.46
3588 6321 3.153919 CAAGAATTTTGGGACGGAGGAA 58.846 45.455 0.00 0.00 0.00 3.36
3589 6322 2.107552 ACAAGAATTTTGGGACGGAGGA 59.892 45.455 0.00 0.00 0.00 3.71
3590 6323 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
3591 6324 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
3593 6326 5.699097 TTAAGACAAGAATTTTGGGACGG 57.301 39.130 0.00 0.00 0.00 4.79
3594 6327 8.487176 CAAATTTAAGACAAGAATTTTGGGACG 58.513 33.333 0.00 0.00 32.35 4.79
3595 6328 9.325198 ACAAATTTAAGACAAGAATTTTGGGAC 57.675 29.630 0.00 0.00 33.39 4.46
3596 6329 9.541143 GACAAATTTAAGACAAGAATTTTGGGA 57.459 29.630 0.00 0.00 33.39 4.37
3597 6330 9.546428 AGACAAATTTAAGACAAGAATTTTGGG 57.454 29.630 0.00 0.00 33.39 4.12
3605 6338 9.582431 CCGTATCTAGACAAATTTAAGACAAGA 57.418 33.333 0.00 0.00 0.00 3.02
3606 6339 9.582431 TCCGTATCTAGACAAATTTAAGACAAG 57.418 33.333 0.00 0.00 0.00 3.16
3629 6362 7.745022 TTCGTTTTAGTGTTAGATACATCCG 57.255 36.000 0.00 0.00 39.39 4.18
3630 6363 9.148104 AGTTTCGTTTTAGTGTTAGATACATCC 57.852 33.333 0.00 0.00 39.39 3.51
3640 6373 9.924650 AGATGTATCTAGTTTCGTTTTAGTGTT 57.075 29.630 0.00 0.00 34.85 3.32
3641 6374 9.355215 CAGATGTATCTAGTTTCGTTTTAGTGT 57.645 33.333 0.00 0.00 34.85 3.55
3642 6375 9.355215 ACAGATGTATCTAGTTTCGTTTTAGTG 57.645 33.333 0.00 0.00 34.85 2.74
3673 6406 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
3674 6407 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
3675 6408 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
3676 6409 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
3677 6410 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
3678 6411 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
3679 6412 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
3680 6413 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
3681 6414 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
3682 6415 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
3683 6416 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
3684 6417 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
3685 6418 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
3686 6419 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
3687 6420 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
3688 6421 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
3689 6422 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
3690 6423 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
3691 6424 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
3692 6425 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
3693 6426 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
3694 6427 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
3695 6428 3.400322 AGTATATACTCCCTCCGTCCCAA 59.600 47.826 9.71 0.00 0.00 4.12
3696 6429 2.991713 AGTATATACTCCCTCCGTCCCA 59.008 50.000 9.71 0.00 0.00 4.37
3697 6430 3.735720 AGTATATACTCCCTCCGTCCC 57.264 52.381 9.71 0.00 0.00 4.46
3698 6431 5.434182 ACTAGTATATACTCCCTCCGTCC 57.566 47.826 18.68 0.00 37.73 4.79
3699 6432 8.854614 TTTTACTAGTATATACTCCCTCCGTC 57.145 38.462 18.68 0.00 37.73 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.