>input_sequence_43959
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--------------------------------------------------ATGGAGGTGCAGGCTCGCCATGGCGTCCTG
CCAACAGGGAGGCAGCAGCACCTCCATGGCCATGGCCAATCTCACCATCAAGCTCCCGCGGGTAGGGGTCTCTGCAAGAA
CTCTTGGCCATTCCGTTCTTCCCCCCTCCTCTTGGCCGACAGTTCTTCGCTCTCTCTTCTTTTTCTGCTTCTCCCGTCCA
GTGATCTTCCTCCGCATTTCTAATAGAAATTTTACTTCTTGGGAAGCCATTGCCAGTTGATAGCCCTGTTTGATCGAATC
TTTGGAAGGCTCTGCTTGGTTCTTGGTTCTTGTGGTGCTCTGCTCTCTCAAATTCATGCCCCCCCTCC-TCCTCCCCCTT
TCCCCGTCTCCCCTGGTTTTACTGGCTTCCGAGGAGTGGCTTGCGCTTTGATCTCTGGGCCAAAAACTTTCTGGGAGGTT
TGTTTGTGCCTCATCTATCTTCTTGTTCCATTATTACAAGCAGGAGCAACAGAGGCAAAAAAATTT-CTTGTTTT-CAGG
GATGCATCATGC-AGGTACAGTGAA-----------AGATCGGCTCTGCACAAGGAAAAGATTCTCAA-TAGTGAAATTT
ATTAGA-TATGATGGTCTTTTAACCTTTTGATTCCT-----GGGAACCAGTAGTAGCAA-GGCCTGCAGTGTGAATCACC
------------AGAGAGAG------GGAGAGAGGGATTTGTGTGGGAAA-TTTGGGCT---------------------
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---------TATCTGCATATTGTCTGTGATCCAGTTGGCTCACAGCTTTTGTGACTCCCC-TTCTTTCCTTTCAAACCAC
AAAAATGCCCTGAAAGTTCTGATAAAATTCATAAATGCAGTTGAAAAAC--AAAATGCAGCTGTGAACTCACTG---ATT
TTCTTCTCTTCTCAGAGGCACTGATT---CCATGTCTTTTACCACTGTATAACAAAACAAACAAATTTGCAGGAGAG---
--GATGAGTGGTGGGAGTACTTCCCATGCCCCTTCTGCTACATTGAGGTGGAGGTCCCCTTCCTCTGTGACCACCTGCAG
GAGGAGCACTGCTTCGACATGAGGAATGCTGTAAGAACAAAC-------CATTGTGCATTTCCCAATCTGGTGATTGAGT
GGCTTCTCTTGATGTAACAAATCTGCATTTCCCTCTCTGGTGATTGAGTGGCTTCTTCTTCTTCTTC---CAGGTGTGCC
CGATCTGCGCCGACAACCTCGGGGCCGACACGACAGGGCATTTCAGGGAACGGCACTCACAGCAACTCAAGGTACAGTGA
AACTTCCATCTTCACTGCCAGTAATGTCACAACAACAGGCATTGCAT----TTTGCAAACCACATTGCAGCTCACTGTCA
ATGCCATTTTGATC---ACAGATGAGGAAGTCGTCTTCTTCCAGAGCAGGGGCAGCAGGTTCTGACAAGGAGGCATATGA
AGAGGACGACTCCTACTTTGAAGAATCATCGTACATCATGGGCCAGCCGGTTCCTGATGATCATTCACCTGACCCTCTGC
TCTCCCAGTTCATCTGCACGGTCG---CGCCTCCGGTCGTCGATCCGGAGCCCAGCAAGGCCGAGGAGGAGGATCATGCT
GCACCGTCCTCGGATGATCAGAGGTATGATTAGTGCAGATACTGTTGAAGGTTGGGAGTGAAAGATGGCCCTGAATATGA
ACAATGGTGGCTGACTG----CCCCAAATGATCTGCTTCCTTCTTGCTTGCAGGCTGAATCAGGTTGTCATGGACGATGC
GTCGAAGAAGGACCTCGAGGAGCGGTTGCGGAGGGTCGAGTTTGTGAAGCAGATGCTGATGACAACGATAGCTTGGGACT
GA------------------------------------------------------------------------------
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>chr1A_1_TraesCS1A01G024600
AGTGATTGCAAGTGGCATGCAGAAAGAAAGCTCAACCTTAATGGCC----------------------------------
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--------------------------------------------GGCTAAGCACTCACTCAGACC-CAGACCCAGGTCTC
AAACAAACACACTGCATGTACACATTGT-TTTTC---CTTTGGTGTCACTTTCCAACTTGGCTTGGCTCCCAAGTTCCCT
CACAAAGGTGATTAACTATATGGCTAAACACATTGTTTTTTAGAAAGAGAAGCAAAA-------GGCCATCAAGACAATT
AATTAACAGTTAGATCAGGAGAGAGACAAACAAACCTGGTGATGAAGAGCACTGCGGCTAGCTCTCCTGCTCCCAGTTGC
ACCATTTGTTTAACCGCATGCCACGTGTTC--------------------------------------CGTACAAGGCAA
CGTGCCTTG-----GTGACAACAAAGGTCAGAAAATA-----------TGCCTGCCTGCTTAATCCAAATTGTTGTCACA
TTAGGATAAGAGCAAGATGGATGAGACCAATAAATTCTAGTACCATTTTTTTGCACTGCACATGGAGATATTTTCTTGCA
TATAAAT-------------------------------------------------------------------------
--AATAATATACAG------------------------------------------------------------------
----------------------------------------------------------------CAGTATATG--TAAAA
AACTTGAACAATTAGGACAGTTGCA----------ATCAGGAGATCAAATGGTTCGTGTTGACAGTCAAGATAATTAGCT
TTCCTGGAGAGAACTAAGCATTCTGCCCTCACCTAACCGATTCCTATTAAGGT--GTCATTTTCGCCATCCTTTTTCTTC
TCTTTG--GCTTTGCTTTTGAACATGTCATCGCACGGG-----AAGAAAAAGAAAAGAGAAATATTCGTGTGGCCACAAA
GGCGAGGAGGCGGCCACCATGGACGGACGGGCAGCCCGGTTTGTTTATAT----GTGATGTGATGAATGCCACATGAGGC
TGCTCTGCTGACCCACCCAC----------CCCCTC---------------CCTGCTCTGCTCTGCCATTACTTGGCGTG
TGCTGCTGCCGCTGCTGAGGTGAACAGGAGAGAGAAGAAGAAGAA---TAGAAGAGCAAGCAGTGAGAAGTCTGAGAGAG
AGAGAGAGAGAGAGAGAGAGAG--------AGAAGAAGAGCAAGGAGGAGATGGAGGTGCAGGCTCGCCATGGCGTCCTG
CCAACAGGGAGGCAGCAGCACCTCCATGGCCATGGCCAATCTCACCATCAAGCTCCCGCGGGTAGGGGTCTCTGCAAGAA
CTCTTGGCCATTCCGTTCTTCCCCCCTCCTCTTGGCCGACAGTTCTTCGCTCTCTCTTCTTTTTCTGCTTCTCCCGTCCA
GTGATCTTCCTCCGCATTTCTAATAGAAATTTTACTTCTTGGGAAGCCATTGCCAGTTGATAGCCCTGTTTGATCGAATC
TTTGGAAGGCTCTGCTTGGTTCTTGGTTCTTGTGGTGCTCTGCTCTCTCAAATTCATGCCCCCCCTCC-TCCTCCCCCTT
TCCCCGTCTCCCCTGGTTTTACTGGCTTCCGAGGAGTGGCTTGCGCTTTGATCTCTGGGCCAAAAACTTTCTGGGAGGTT
TGTTTGTGCCTCATCTATCTTCTTGTTCCATTATTACAAGCAGGAGCAACAGAGGCAAAAAAATTT-CTTGTTTT-CAGG
GATGCATCATGC-AGGTACAGTGAA-----------AGATCGGCTCTGCACAAGGAAAAGATTCTCAA-TAGTGAAATTT
ATTAGA-TATGATGGTCTTTTAACCTTTTGATTCCT-----GGGAACCAGTAGTAGCAA-GGCCTGCAGTGTGAATCACC
------------AGAGAGAG------GGAGAGAGGGATTTGTGTGGGAAA-TTTGGGCT---------------------
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---------TATCTGCATATTGTCTGTGATCCAGTTGGCTCACAGCTTTTGTGACTCCCC-TTCTTTCCTTTCAAACCAC
AAAAATGCCCTGAAAGTTCTGATAAAATTCATAAATGCAGTTGAAAAAC--AAAATGCAGCTGTGAACTCACTG---ATT
TTCTTCTCTTCTCAGAGGCACTGATT---CCATGTCTTTTACCACTGTATAACAAAACAAACAAATTTGCAGGAGAG---
--GATGAGTGGTGGGAGTACTTCCCATGCCCCTTCTGCTACATTGAGGTGGAGGTCCCCTTCCTCTGTGACCACCTGCAG
GAGGAGCACTGCTTCGACATGAGGAATGCTGTAAGAACAAAC-------CATTGTGCATTTCCCAATCTGGTGATTGAGT
GGCTTCTCTTGATGTAACAAATCTGCATTTCCCTCTCTGGTGATTGAGTGGCTTCTTCTTCTTCTTC---CAGGTGTGCC
CGATCTGCGCCGACAACCTCGGGGCCGACACGACAGGGCATTTCAGGGAACGGCACTCACAGCAACTCAAGGTACAGTGA
AACTTCCATCTTCACTGCCAGTAATGTCACAACAACAGGCATTGCAT----TTTGCAAACCACATTGCAGCTCACTGTCA
ATGCCATTTTGATC---ACAGATGAGGAAGTCGTCTTCTTCCAGAGCAGGGGCAGCAGGTTCTGACAAGGAGGCATATGA
AGAGGACGACTCCTACTTTGAAGAATCATCGTACATCATGGGCCAGCCGGTTCCTGATGATCATTCACCTGACCCTCTGC
TCTCCCAGTTCATCTGCACGGTCG---CGCCTCCGGTCGTCGATCCGGAGCCCAGCAAGGCCGAGGAGGAGGATCATGCT
GCACCGTCCTCGGATGATCAGAGGTATGATTAGTGCAGATACTGTTGAAGGTTGGGAGTGAAAGATGGCCCTGAATATGA
ACAATGGTGGCTGACTG----CCCCAAATGATCTGCTTCCTTCTTGCTTGCAGGCTGAATCAGGTTGTCATGGACGATGC
GTCGAAGAAGGACCTCGAGGAGCGGTTGCGGAGGGTCGAGTTTGTGAAGCAGATGCTGATGACAACGATAGCTTGGGACT
GATTATC------CAGGGCTGGTTATAGCACTTGACTAGCTAGGATTGCTCAGGATCTTGGAA----GTGCCATTTTTGT
TGAGATTGACCCTTTGGTACATGTATACCTGCAACCTTGGAT----ACCTGAATTGACCAATCTTGATCCTTTTAAGCTA
AGCTTTGGTTATCATCATGTCTCTTTCCAGGAGAAACCAGTTGGACTCTTC----------TTTACATAATTGATTGACA
GACACCCACTCTTTTGCATT-AAAGTACACATGATGCAAGAACATAAACTTTCTCAGCAAAGAAGAAACATCCAGCAAGT
ACATTGTACAAGCAAAAATGGCAGGTAGAATCGCACCATATTTGATCAAAAATAATGT---ATTGGACATCAAAATTTGC
GGCAGAAGAGCTACAGG---GAGTGGATCC----------TGCAAAACATAGGGCTATCCATTCACTATAGTTTTGCAAA
TG-ACAGAACTGCGACAGTCATACATTGTTCAGGCTT-AACAAATGAATTCCTTGACTCCAAGGAGACCTAAGAAGTCAG
AT--TGCAGATTCATGTAGACCATACTGCTGTATCAGCGGCTTGCACCACGACCATGAGTGCTCAGTGCCTCAGTCCACC
ACATGTCTAGAAATAGCTGCTCTCGATCGCAATCTTCCAAAGGGCATGGCCAATTCTCATAGGTATCCCTTGGTGATTTG
TTCTTGCAGTTCGTCGAAGTTCCAAGCATCATTGACCGAATAGTCACCTGTGA-------AGCAGACATAAAAATCAATG
GCATAAAAGTACTTGCATTTTCCAAGCCAAAGAGACTTATGTGCCTTGAAAACACATATGTATATAACGCTCGTATATAC
TTCCTCCGTCCCAAAATTCTTGTCTTAAATTTGTCTAGATACGGATGTATCTAACACTAAAACGAAACTAGATACATCTG
TATTTAGACAAATCTAAGACAAGAATTTTGGGACGGAGGGAGTATATACTAGTAAAAAAACACAGGATGTATATAATGCT
CATATAAAACATAC
>chr1D_1
AGTGATTGCAAGTCACATGCAGAAAGAAAGCTCAACCTTAATGGCTAAGGGCATCTCCAAGACGCACCGTAAACCTCCCA
CCATGGTTCAGACCGTGTAAGCCATCCAACACCGACCTGTATCGGTCCACGGAGCAGTCCGGACGCGATTTCTCTTGCAA
ACCGGAGACAAAAGGTGGGGGAGGTTTGCGGGAGTCCATACCGATCTCACGCCCGCTTCTGACCGTCATGGCCCACCAAA
AAACCCTCCCCCCAGCGAGCGCATCCCGTGCGGCGTCAGCTGCCCGCATTCATGCCGCTGTAGAGCGCGCCGCTTCTCAT
TAAAGGCGGCTCAGGGCGGACGCGACCTCTCACTGCCTCCGCCATTGAAGCGGCGCGCCGGCTGAGGGCGCCGCCCGCTG
CACGCCTGGCTGAACACGCCTCCTCGCCGCATTCATACTCCTCCATTAAACCAATGTGGAAGCCGAGAAACCTACTCTGG
CCACACGTCCATTCATGCCAGGACCGGCATTAAACACAACGCCGGCCGAACTCCTCCTGTCTGCCCTTTTTTTAAACGAG
GCCAGACGCCGGGCAAGAATCACACCCCTCCACCGCTCCCCATATTTTCTGATGGCTTCTGAAGAGCAGTTATCCGGCAT
ACAAGCCGGCTGGGTGGCCCGCCGAGCCCGCCCGATACGAGCGAGGCAGCCCACTGCTCCACCTCCCGCGCCTGCCGTAG
CAAGTTGCAAGATTACAAAGTGCAAGAGGAAGCTGTGGCAAGTTCCAACCCCCTTCCTTCCCATTAAGCCATCATCATTA
TTGCAAAAGAAAAAGGGTGCCCTTTTTGAGTGTGAGAAAGTGTCATGCAGAAAGCTCAGCCTTGACGGCCACACACTTGC
TCAGAGAACAGGGGGAGCCAGCCAAAGCTCTCCTCCATGTGCCTGCCTGGTTTCAGCCGCTCTACCACCGGTCCACTGAA
CCCAGAGCCTTTTGCGTGCACAAGTTTAACATGCTTTTCGTAGACAATCCAAAATACTATTCCCTCTGTTCCAAAATTCT
TGTCTTAGAATTATCTAAATACGGATGTATCAAGTCAGATACATCCGTATCTAAACAAATTTAAGACAAGAATTTTGGGA
CGGAGGGAGTACAAGCTGGAAAGGCTTGTTGTGGTTCTTCAGTCAGCAACCTACACGTGTTCACTGCCATGATTGAAGAT
GAATATATATCGAAAGTTTTTTCGTAAAAAAGGAAGAATACGGTACAAACAGAAACGCTAATACATACACATATATACTC
ATCCCTCTGAATGCATGCATGCATGCATATCATATCCATATAAGCACCTCCGAGAGACTGAAAGGGCATATCATCAAACT
GACGAAGTCGCTACACACATCTTTCTAGTTGACGAGAACACATGTTTTCACATACACCTTCGTAGTCGACGAGAACACAT
GTTGGTTAGGAATGCGTCCGCTCTTTAAGCCATTGTATGTATGCACACCATTGTTTTCTTCTTCTTGGGTCGCTTTCCAA
CTTGGCTTGCCTCCCAAGTTCCCTCATGGAAAAAGGCCCATCCATCGATCCTCAAAAAGGAAAAAATAAAATAAAAAAAG
TCCCATCCATCCAAAAAGTGAGGGAGAAACAAAACGCACTGATAATTAAGTCAGGGTGGTCATGATGAGCAACACTCCCA
ATGTTTGTTTGTTCTGTAGTGCCAGAGTTCCGTACGAGGCAACGTGGCAGCTGGAGCCACTATTTCTTTTGCATATAATA
CTCCCTCCGTTCCATAATATTATAATATAAAAACGTTTTTAACACTACACTATGAAAGAAAGAAAACAAGCGGTTTATAT
TGAATGTAATCAACTTTGTTATACTTTTGATACGAGTACAATGGCAGGCCAAGTTTCTTTCCAAAAAGTTTTAGATATTT
TCAACTTTTTTCGTAATTACTACTTTCTTTTTTTGCATACCATGTGCATATTACCCACCCAAGAGCCCAGGGGCGTTTTC
CAAGATCCCACCCCCTGCACATTAAGTCATGTATCATCATCATCATCATCATTATTGCAAAAAAGGCAGACTTTTTGGCT
TGAGTGAGTGCAAGTGGCATGCATGCAGAAAGCTCAGCCTTAATGGCTAAGCACTCACTCAGGCC-CAGGTCTCAAA--C
AAACAAACGCACTGCATGTACACATTTTGTTTTC---CTTTGCTGGCACTTTCCAATTTGGCTTGGCTCCCAAGTTCCCT
CAGAAAGGTGATTAACTACTGTTACTTATTGGAA-------AGA----GAAGCAACATAAGGCCGGCCATGAAGACAATT
AATTAAGAGTTAGATCAGGACACCCACAAACAAACCTGGCCATT-------------------------GTGCAAGTTGC
ATCATTTGTTTAACCACATGCCACATGCTCTCTATAATGTTCTCTATAATCTTTCTGTGCCAGGGTTCCGTACAGGGCAA
CGTGCCTTG-----CTGACAACAAAGGTCAGAAATATGCCTT-GAGAGTGCCCGCCTGCTTAATCCAAA-----GTCACA
TTAGGATAAGAGCAAGATGGACGAGACCAATACCGCTTTGTTTTATAGTACTACTCCCTCCGTTCCATAATATAGTGCCT
ATAAACTTTTTGAGAAATCAAACTTTGCAAACTTTGACCAAGTTTGTAGGGAAAAATATTTATATCTACAATAATAAAAA
TAAATAATATACAG------------------------------------------------------------------
----------------------------------------------------------------CAGTATAATAATAAAA
AACTTCAACAATTAGGATAGTTGCAGAACTGAGCAATCAAGAAAACAAAGGGTTCATGTTGACACATAGTT---------
----------------AACATTCTCCCCTCACCTAACCAAATTCCATCACGGGC-GTCATTTTCACCATCCTTTTTCTTC
TCTCTCTCGCGTTGCTTTTGAACATGTCATCGCACGGG-----AAGAAAAGA-------AGATATTCCTGTGGCCACAAA
GGCGAGGAGGCGCCCACCATGGACGGACGGGCATCCTAGTTTATTTATAAATGCGTG------TGTATACCACATGAGGA
------GCTGAGAGGGAGCAACGAGGCTGACCCACCCCACCCCCTCC----------CTGCTCTGCCATTACTTGGCGTG
TGCTGCTGCCGCTGCTGAGGTGAACAGGAGAG---AGAAGAAGAA---TAGAAGAGCAAGCAGCGAGAACTCTGAGGCAG
AGAGAGAGAGAGAGAGAG------------------AGAGGAAGAAGGAGATGGAGGTGCAGGCTCGCCATGGCTGCCTA
CCAACAGGGAGGCAGCAGCACCTCCATGGCCATGGCCAGGCTCACCAACAACCTCCCGCAGGTAGGGGTCTCTGCAAGAA
CTCTTGGCCATTC---TCTTCTTTCCCCCTCTTGCCCGACAGTTCTCTGCTCTCTT---TTCTTCTGCTTCTCCTGTCCA
GTGATCCTCCTCTGCATTCTCAATAGAAATTTTATTTCTTGGGCAGCCATTGCT-----------CTGTTTGATCCAATC
TTTGGAAGGCTCTGTTTGGTTCTTG-------GGGTGCTCTGCTCTCTCAAATTTATGCCCCCCCTCCCTCCTCCCCTTT
CCCCCGTCTCCCCTGGTTTTACTGGCTTCTGAGGAGGGGCCTGCGTTTTGATCTCTGCCCGGCAGGGTTAGATGGGACCT
AAC--GTGTCCCATCTATCTTCTTGCTCCATTAG---AAGCAGGAGCAACCGAGGCAATATT-TTT-CCTGTTTT-CAGG
GATACATCATGC-GTTATCTTGTGATGTGATCCAGCAGATCGGCTCTGCACAAGGAAAAGATTCTCAA-CAGTGAAATTT
ATTAGAGTATGATGGTCTTTTTAACCTTTTGATTTCTGGGAGGGAACCAGTAATAGCAAGGGTCTGCAGTGTGAATCACA
TGAGGGAGAAAGAGAGAGAG------GGAGAGAGGGATTTGTGTGGGAAAATTTGGGCT---------------------
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---------TATCTGCATATTGTCTCTG-TCCAGTTGGCTCACAGCTTTTGTGACTCCCATC-CTTTCCTTTCAAACCAT
AAAAATGCCCTCAAAGTGCAGATAAATTTCACAAATGCAGTTAAAAAAAATAAGATGCAGCTGTGAACTTACTG---ATT
TTCT-CTCTTCTCAGAGGCACTGGCT---CCACATCTTTTACCACTGTATAATAAAACAAACAAATTTGCAGGAGA----
-AGATGAGTGGTGGGAGTACTTCCCCTGCCCCTTCTGCTACATTGAGGTGGAGGTCCCCTTCCTCTGTGACCACCTGCAG
GAGGAGCACTGCTTTGACATGAGGAACGCTGTAAGAAAAAGAAAAAAATCATTGTGCATTCCCCTCTCTGGTGATTCAGT
GGCTTCTCTTGATGTAAAAATT---------CCTCTCTGGTGATTGAGTGGCTTCTTCTTCTTCTTC---CAGGTGTGCC
CGATCTGCGCCGACAACCTCGGGGCCGACACGGCCGGGCATTTCAGGGAGCAGCACTCACAGCAACTCAAGGTACAGTGA
AACTTC-ATCTTTACTTGCAGTAATGTCATGA--ACAGACACTGCAATCAATTTGCAAACCACATTGCAGCTCACTGGCA
ATGCCATTTTGATCACAACAGATGAGGAAGTCTTCTTCTTCCAGGGCAGGAGCAGCAGCTGCTGACAAGGAGGCATATGA
AGAGGATGACTCCTACTTCGAAGAATCCTCATACATCATGGGCCGGCCGGTAGCTGATGATCATTCCCCTGACCCTCTGC
TCTCCCAGTTCATCTGCACCGTCG---CGCCCCCGGTCATCGATCCAGAGCCCAGCAAGGCCGAGGAGGTTGATCATGCT
GCACCTTCCTCAGATGATCAGAGGTATGATCAGTGCATATAGAGCTTGAAA---------------GGTCCTGAATCTGA
ACAATGGTGGCTGACTG----CTCCAAATGCTCTGCTTCCTTCTTGCTTGCAGGCTGAATCAGGTTGTGATGGATGATGC
GTCGAAGCAGGACCTCGAGGAGCGGCTGCGGAGAGTCGAGTTTGTGAAGCAGATGCTGATGACGACGATGGCTTGGGACT
GATTCTC------CAGGGCTGGTTATAGCACTTGAGTAGCTAGGATTGCCCAGGA--TCTTGGAAGTGTGCCATTTTTGT
TGAGATTGACCCTTTGGCACATGTACACCTGCAAGCTTGGAT----ACCTGAATTGACCAATGTTGATCC-TTTAAGCTA
AGCTCTGGTTACCTTCATGTCTCTTCCCAGGAGAAACCAGTTTGGTGACTTTTTTTTTTCTTTTACATAATTGACACT--
-----TCACTCTTTCGCATTAAAAGTACACATAATGCAAGAACATAAACTTTCTCAACAAAGAAGAAACATCCAGCAAGT
ACACTGTACAAGCAAAAG-GGCAGGTAGGATTACACTATATTTTATAAAAAATAATAATGCATTCAACATCAAAATTTGC
GGCAGAAGAGCTACATCAACGAATGCATCCATGACAATTTTGCAAGACATAAAACTAAGCATTCATTGCAGGTTTGCAAT
AAAACAGAACTACGACAACCATACAGCCTTCAGGGTT-AGCGAATGAATTCCTTGATTCCAATCAGACACCAGAAGCCAG
CTTGTGCAGATTCAAGTAGACCATACCACTGTATCAGCTCCTTGCACCATGACCATGAGGGCTCAA--------TCCACC
ACATGTCTGGAAATAGTGGCTCTTTATCGCAATCTTGCAAAGGGCATGACCAATTCTCACAAGTATCCCTTGGTGATTTG
TTCTTGCAGTTCGTCGAAGTTCCAAGCGTCATTGACCGAATAGTCACCTGCCGAGCAGCCAGCAGGCATAAAAATCAATG
GCATAAAAAGTATTTGCAATTTCT-------GAGTCTTATGTGCCTTGAAAGCACATATGTATATAATGCT---------
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>chr1B_1
AGTGACTGCAAGTGGCATCCAGAAAGAAAGCTCAAA--------------------------------------------
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----------------------------------CAACCTTAATGGCTAAGGACTCACTCACAAGTCACACCCAGGTCTC
ACACACT-GTACTGTATGTACACATTGT-TAATTACTCTTTGCTGTCACTTTCCAACTTGGCTTGGCTCCCAAGTTCCCT
CAGAAAGGTGATTAACTACTGTTACTTATTAGAA-------AGAAAGAGAAGCAAAATAA----GGCCATGAAGACAATT
AATTATTAGTTAGATCAGGACAGAGACAAACAAGCCTGATCATGAAGACCACTGTGGCTAGCTCTCATGGTGCAAGTTGC
ACCATTTGTTTAACCACATGCCACATGCCCCCCAATGCTCTA--TATAATCTTTCTGTGCCAGGGTTCCGTACAGGGCAA
CGTGCCTTGGTGTCGTGACAACAAAGGTCAGAAATATGCCTTTGAGAGTGCCTGCCTGCTTAATCCAAATTGTTGTCACA
TTAGGACAACTATGGAGCTA---------------------------------------------------TTTTTTTCA
TATAAAT-------------------------------------------------------------------------
--AATACTAGTAGCATATATTCTCGCTCCGTCCGGAAACACCTGCTGCTGGAGAAATAAGTGAAAATGGATGTATCTAGA
ACTAAAATACGTCTGGATACATCTATTTCTTCAACATGTATTTTCAGGCGGAGAGAGCAGTATACAATATATT--AAGAA
AACTTGAACGATTAGGAGTTGCAGGCCTGGAT--AATCAAGAAAACAAGTGGTTTATGTTGACAGTTCAATAATTAA-CT
TTGCTGAAGGAAACTAAACATTCTCCCCTCACCTAACCAAAT-CCATCACGGGAGGTCATTTTCGCCATCCTCTTTTC-C
TCTCTCTCGCTTTGCTTTTGAACATGTCACCGCACGGAATGAAAAGAAAAGA-------AAATGTTCGTGTGGCCACAAG
GGCGAGGAGGGGAGA----------------CAGCCCAGTTTGTTTATAT----GTG------TGAATGCCACATGAGGA
------GCTGACCCACCCAC----------CCCACCCCACCCCCTCCCTGGCCTGCTCTGCTCTGCCATTACTTGGCGTG
TGCTGCCGCCGCTGCCGAGGTGAACAGGAGAG---AGAAGAAGAAGAATAGAAGAGCAAGCAGTGAGAACTCTCAGATAC
TGAGAGAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGGAGGAGATGGAGGTGCAGGCTCGCCATGGCTCCCTG
CCAACAGGGAGGCAGCAGCGCCTCCATGGCCGGC------CTCACCATGAACCTACCGCAGGTAGAGGCCTCCGCAAGAA
----------------------------CTCTTGGCCGACAGTTCTGCGCTCTCTT---CA-------------------
----------TCTGCATTTCCAATAGAAATTCTACTTCCCGGGCAGCCATTGCCGGCTGATACCCCTGTTTGATCCAACC
TTCGGAAGGCTCCGTTTGGTTCTTGGTTCTTGGGCTGCTCTGCTC----------------CCCCTCCCTGTTCTTGGCT
CTTTGGAAGCCTCTGTTT---------------------------------------GGTCAAAAACTTTCTGGGAGG--
--------------CTAATTTCTTGTCCCGTTAG---AAGCAGGAGCAACAACGGCGATGTT-TTC-CCTGTTTTGCAGG
GATGCATCGTGCGATTATCTTGTGATGTGATCCAGCAGATCGGCTCTGCACCAGGAAAAGATTCTCAAACAGTGAAATTT
GTTAGAGCATGATGGTCTTTTTACCCTTTTGGTTTCTGGGAGGGAGCCAGTAATAGCAA-GGTCTGCAGTGTGAATCACA
TGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNTATCTGAATATTGTGTCTG-TCCAGTTGGCTCACAGCTTTTGTGACTCCCATTTCTCTCCTTTCACATCAC
AAAAATGCCCTGAAAGTTCAGAGAAAATTTCATG-------------------AATGCAGCTGTGAACTTACTGCTGATT
TTCC-CTCTTCTCAGAGGCACTGATTATCCCATGTCTTTTACCACTGTGTAACAAAACGAACAAAAAATTGCAGGAGGAG
GAGATGAGTGGTGGGAGTACTTCCCCTGCCCCTTCTGCTACGTCGAGGTGGAGGTCCCCTTCCTCTGCGCCCACCTGCAG
GAGGAGCACTGCTTCGACATGAAGAACGCTGTAAGAACAAAAGAAAACCATCC-TGCATTTCCCTCTCCGGTGATTCAGT
GGCTTCCCTTGAGGTACAAATT---------CCTCTTTGGTGATTCAGTGGCTTCTTCTTCTTCTTCTTTCAGGTGTGCC
CGATCTGCGCCGAGAACCTCGGGGCCGACACGGCGGGGCATTTCAGGGAGCAACACTCACAACAACTCAAGGTACAATAA
AACTTC-ACCATCACTGGCACTAGTGTCATGG--ACAGGCATTGCAT----CTTGCAAACCACATTGCAGCTCACTGGCA
ATGCCATTTTGATC---ACAGATGAGGAAGTCCTCTTCTTCCAGGGCAGGAGCAGCAGCTGATGACAAGGAGGCATATGA
AGATGAGGACTCCTACTTTGAGGAATCCTCATACATCATGGGCCGGCCGGTTCCCGATGACCATTCTCCCGACCCTCTGC
TCTCCCAGTTCATCTGCGCCTTCGCGCCGCCCCCGGTCGTCGATCCGGAGCCCATCAAGGCCGAGGAGGAGGATCATGCT
GCACCTTCCTCAGATGATCAGAGGTATGGTTAGTGCAGATACTGTTGAAGGTTGGGAGTGGAAGATGGTCCTGAACCTGA
ACAATGGTGGCTGACTGACAGCTCCAAATGCTCTGCTTTCTTCATCCTTGCAGGCTGAATCAGGTTGTGATGGACGACGC
GTCGAAGGAGGACCTCGAGGAGCGGCTGCGGAGGGTCGAGTTTGTGAAGCAGATGCTGATGACGACGGTCGCTTGGGACT
GATGATTCTCCAGCAGGGTTGGTTTCAGCACTTGACTAGCTAGGGCTGTTCAGGATCTCTTGGATGTGTGCCGTTTTTGT
TGAGATTGACCCCTTGGCACATGTACACCTGCAACCTTGGATTATTACCTGAATTGACCAATCTTGATCCCTTTAAGCTA
AGCTTTGGTTACCTTCATGTCTCTTCCCAGGAGAAACCAGTTGGACTCTTC----------TTCACA----TGATTGACA
GACACTCACCCTTTTGCATTGGAAGTACACATAATGCAAGAACATAAACTTTCTCAACAAAGAAGAAACG----------
--------------------------------ACACCATATTTGATCAAAAATAATGT---ATTGGACACCAAAATTTGC
GGCACAGGAGCTACATCA-CGAGTGGATCCGTTACAATTTTGCAAAACATAGGGCTGTCCATTCATTATAGTTTTGCAAA
TG-ACAGAACTGCGACAGTCATACATCGTTCAGGGTAAAACAAATGAATTCCTGATTCTAGCAA----------------
-------------------ACCATACCACTGTATCAGCGGGTTGCACCACGACCTTGCTG--------------------
---------GAAGTAGCTGCTCTCGATCGCAATCTTCCAAAGGGCATGGCCAATTCTCATAGGTATCCCTTGGTGATTTG
TTCTTGCAGTTCGTCAAAGTTCCAAGCGTCATTGACCGAATAGTCACCTGTGA-------AGCAGACATAAAAATCAATG
GCATAAAAGTACTTGCATTTTCCAAGCCAAAGAGACTTATGTGCC-TGAAAACACATATGTATATAATGCTCATATATAT
AGAGTAGTAAAAAAACAGGATGTATATAATGCTCATATATATAGAG----------------------------------
-------------------------------------------------TAGTAAAAAAACACAGGATGTATATAATGCT
CATATAAAACATAC
>chr3A_1111
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CTGTTGGCCATTC---TGTTCTTT-CCCCTCTTGGCCGACAGTTCTCTGCTCTCTT---TTCTTTTGTTTCTCCTGTCCA
GTGATCCTCCTCCCCATTCTCAACAGAAATTTTACTTCTTGGGCAGCCATTGCT-----------CTGTTTGATCGAATC
TTTGGAAGGCTCTGTTTGGTTCTTG-------GGGTGCTCTTCTCTCTCAAATTTATGC-CCCCCTCCCTCCTCCCCTTT
CCCCCGTCTCCCCTGGTTTTACTGGCTTCTGAGGAATGGCCTGCGTTTTGATCTCTGCCCGGCAGGGTTAGATGGGACCT
AAC--GTGTCCCATCTATCTTCTTGCTCCATTAG---GAGCAGGACCAACAGAGGCAGCATT-TTTGCCTGTTTT-CAGG
GATGCATCGTGC-ATTATCTTGTGGC-TGATCCAGCAGATTGGCTTTGCACAAGGAAAAGATTCTCAA-TAGTGAAATTT
ATTAGAGTATGATGGTCTTTTTAACCTTTTGATTTCTGGGATGGAGCC----ATAGCAA-CGTCTGCAGTGTGAATCACA
TGAGAGAGAGAGAGAG----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------
>chr4D_1144
--------------------------------------------------------------------------------
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---------------------------------GGCTGACAGTTCTCTGCTCTTTT---TTCTTTTGTTTCTCCTGTCCA
GTGATCCTCCTCCGCCTTCTCAACAGAAATTTTACTTCTTGGGCAGCCATTGCT-----------CTGTTTGATCGAATC
TTTGGAAGGCTCTGTTTGGTTCTTG-------GGGTGCTCTGCTCTCTCAAATTTATG--CCCCCTCCCTCCTCCCCTTT
CCCCCATCTCCCCTGGTTTTACTGGCTTCTGAGGAGTGGCCTGCGTTTTGATCTCTTCCCGGCAGGGTTAGATGGGACCT
AAC--GTGTCCCATCTATCTTCTTGCTCCATTAG---GAGCAGGAGCAACAGAGGCAATATT-TTTGCCTGTTTT-CAGG
GATGCATCGTGC-ATTATCTTGTGATGTGATCCTGCAGATCGGCTTTGCACAAGGAAAAGATTCTCAA-TAGTGAAATTT
ATTAGAGTATGATGGTCTTTTTAACCTTTTGATTTCTGGGATGGAGCC----ATAGCAA-CGTCTGCAGTGTGAATCACA
TGAGAGAGAAAGAGAGAGAGAGGCAGGGAGGGAGGGATTTGTGTGGGAAAATG-GGGCT---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------TATCTGCAAATTGTCTCTG-TCCAGTTGGCTCACAGCTTTTGTGGCTTCCC-TGCTTTCCTTTCAAAGCAC
AAAAATACCCTGAAAGTTCAGA----------------------------------------------------------
--------------------------------------------------------------------------------
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--------------
>SNPs
---------------------------------------------S----------------------------------
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--------S---------------------------------S-------------------------------------
--S---------------SSSSSSSSS-SSSSSSSSSSSSS-----------------------------S---------
------S-------------S-------------------S-------S-----S-----------S--S-S-S------
---------------S--------S--S----------------------------------------------S-----
----------------------------------SSS-------------------------------------------
---------------------S----------SSSSS-S--SSS--SS-SS-S-S-SSSS-S-SSSSSS-----S--S--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------S-------
-----------------S---------------------S--S-S----------S----------S--SSS-S-S-S--
--S---S--SS------S------S-------------S-S-S-S--S-S--S---------------------------
---S-S--------------------------------------------SSSSSSSSS---------------------
------------S------------------------S-------------------SSSSSS----------------S
SSSSSS---------------------------SS---------------------------------------------
--------------------------------SSS----------------------------------S-------S--
---------------------S------------------S---------------------------------SS----
--------------------------------------SS-----------S-------S--------------------
-------------SSS-----SSS--S-------------------S--------SSSS--S------------S-----
------S-------------S----------------------S----------S-S-----S-----------------
--------------S-----------------S---------------------S----------------------S--
S----------------------------S----------S----S--------------------------------S-
SSSSS---S-S----------------------SSSS---------------------S-SSS-----S-----------
--------------SSSS-SSSSS--------------------------------------------------------
---------------------S---S---SSS-SSS----------------S---------S----------------S
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------S--S---------------------------------------------------
-------------------S-----------S----------S-----S--------------------S----------
----S---------------------------------------------------------------------------
-------------------------S------------------------------------------------------
--------------------------S--------------S----------------------SS----------S---
-----------------S--S-SSSSSSSSS-------------------------------------------------
--------------------------------S-S--------------S-S----------------------------
------S----------S-----------SS-SS-------------------------------------------S--
--------------------------------S-----------S-----S-------S-S-------------------
------S--------------------S--S-------------S---------------------S-------------
-------------------S-----------S------------------------------------------------
-----S-----S------------------------------------------------S-------S-------S---
----------------------S-------S-------------------------------------S-----------
-------S-----------------S-------------------------------------S-----S----------
----------------------------------------------------------SSSSS-----------------
-----------------S-------S--------------------------------------------S---------
-----------S-S-----------S------------------------------------------------------
-----S--------------------------S-----------------------S-----------------------
---S-------------SS---------S--SS-----------------------------------------------
---------------SS------------------------------------------------S--------------
--------------------------S-------S---------------------S-----SS----SSS-----S---
S-------------S-----------SS-------------------------------S-----SSSSSSSSS------
--------S-----------------------------------------------------------------------
---------------------------S----------------------------------------------------
-------------------------------------------------------------------S----S------S
SSSS-SSSSSSS---SSSSS---S-SS---SSSSS--S---SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------
--------------
>forward_2425
--------------------------------------------------------------------------------
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-----TTGTTTAACCGCATGCCACG-------------------------------------------------------
--------------------------------------------------------------------------------
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--------------
>reverse_3595
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------CGTCCA
GTGATCTTCCTCCG------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------
>forward_3567
--------------------------------------------------------------------------------
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---------------------------CCTCTTGGCCGACAGTTCTT---------------------------------
--------------------------------------------------------------------------------
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--------------
>reverse_5778
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------ATGGCAGGTAGAATCGCACC-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------
