Multiple sequence alignment - TraesCS1A01G007700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G007700 chr1A 100.000 2730 0 0 1 2730 4052167 4054896 0.000000e+00 5042.0
1 TraesCS1A01G007700 chr1D 93.314 1705 89 11 382 2071 210887 209193 0.000000e+00 2494.0
2 TraesCS1A01G007700 chr1D 86.878 663 43 17 2068 2729 209134 208515 0.000000e+00 702.0
3 TraesCS1A01G007700 chr1D 92.857 182 12 1 2550 2730 122225 122044 2.080000e-66 263.0
4 TraesCS1A01G007700 chr1D 85.057 87 12 1 189 275 216728 216643 1.350000e-13 87.9
5 TraesCS1A01G007700 chr1D 82.222 90 13 3 2489 2576 122313 122225 1.050000e-09 75.0
6 TraesCS1A01G007700 chr1B 91.673 1333 79 18 587 1899 5175115 5176435 0.000000e+00 1818.0
7 TraesCS1A01G007700 chr1B 86.970 330 28 7 282 600 5174773 5175098 9.300000e-95 357.0
8 TraesCS1A01G007700 chr1B 92.857 196 13 1 2279 2473 5177103 5177298 1.600000e-72 283.0
9 TraesCS1A01G007700 chr1B 78.197 477 76 19 551 1016 5160335 5160794 2.070000e-71 279.0
10 TraesCS1A01G007700 chr1B 92.462 199 10 2 2532 2730 5177316 5177509 2.070000e-71 279.0
11 TraesCS1A01G007700 chr1B 89.143 175 9 2 1897 2069 5176692 5176858 2.750000e-50 209.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G007700 chr1A 4052167 4054896 2729 False 5042.0 5042 100.000 1 2730 1 chr1A.!!$F1 2729
1 TraesCS1A01G007700 chr1D 208515 210887 2372 True 1598.0 2494 90.096 382 2729 2 chr1D.!!$R3 2347
2 TraesCS1A01G007700 chr1B 5174773 5177509 2736 False 589.2 1818 90.621 282 2730 5 chr1B.!!$F2 2448

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
83 84 0.031178 GTTGTGCCCAGCAAGTCAAG 59.969 55.0 0.00 0.0 41.47 3.02 F
125 126 0.111253 GGCCTATGCACCTGCCTATT 59.889 55.0 13.44 0.0 40.77 1.73 F
1182 1224 0.535780 CAGAGCAGCAACCAACTCCA 60.536 55.0 0.00 0.0 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1433 1475 0.178992 CTGCTGAGGTTGGGTGGAAA 60.179 55.0 0.00 0.00 0.00 3.13 R
1625 1679 0.389296 CATGCCGGTAGTGACGTCAA 60.389 55.0 21.95 2.04 0.00 3.18 R
2643 3055 0.464373 GCGATTTGCCAGGGATCTGA 60.464 55.0 0.00 0.00 43.49 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.203245 ATTGTTGGCCAGCAAGCT 57.797 50.000 33.89 19.75 35.08 3.74
18 19 2.444281 ATTGTTGGCCAGCAAGCTT 58.556 47.368 33.89 19.06 35.08 3.74
19 20 0.319405 ATTGTTGGCCAGCAAGCTTC 59.681 50.000 33.89 8.32 35.08 3.86
20 21 1.747325 TTGTTGGCCAGCAAGCTTCC 61.747 55.000 28.89 0.00 0.00 3.46
21 22 2.601367 TTGGCCAGCAAGCTTCCC 60.601 61.111 5.11 4.71 0.00 3.97
22 23 3.150903 TTGGCCAGCAAGCTTCCCT 62.151 57.895 5.11 0.00 0.00 4.20
23 24 2.753446 GGCCAGCAAGCTTCCCTC 60.753 66.667 0.00 0.00 0.00 4.30
24 25 3.130160 GCCAGCAAGCTTCCCTCG 61.130 66.667 0.00 0.00 0.00 4.63
25 26 2.437359 CCAGCAAGCTTCCCTCGG 60.437 66.667 0.00 0.00 0.00 4.63
26 27 2.348998 CAGCAAGCTTCCCTCGGT 59.651 61.111 0.00 0.00 0.00 4.69
27 28 1.743252 CAGCAAGCTTCCCTCGGTC 60.743 63.158 0.00 0.00 0.00 4.79
28 29 1.915769 AGCAAGCTTCCCTCGGTCT 60.916 57.895 0.00 0.00 0.00 3.85
29 30 1.448717 GCAAGCTTCCCTCGGTCTC 60.449 63.158 0.00 0.00 0.00 3.36
30 31 1.975327 CAAGCTTCCCTCGGTCTCA 59.025 57.895 0.00 0.00 0.00 3.27
31 32 0.108424 CAAGCTTCCCTCGGTCTCAG 60.108 60.000 0.00 0.00 0.00 3.35
32 33 0.543174 AAGCTTCCCTCGGTCTCAGT 60.543 55.000 0.00 0.00 0.00 3.41
33 34 0.331954 AGCTTCCCTCGGTCTCAGTA 59.668 55.000 0.00 0.00 0.00 2.74
34 35 1.063567 AGCTTCCCTCGGTCTCAGTAT 60.064 52.381 0.00 0.00 0.00 2.12
35 36 1.338655 GCTTCCCTCGGTCTCAGTATC 59.661 57.143 0.00 0.00 0.00 2.24
36 37 2.656002 CTTCCCTCGGTCTCAGTATCA 58.344 52.381 0.00 0.00 0.00 2.15
37 38 3.226777 CTTCCCTCGGTCTCAGTATCAT 58.773 50.000 0.00 0.00 0.00 2.45
38 39 2.587522 TCCCTCGGTCTCAGTATCATG 58.412 52.381 0.00 0.00 0.00 3.07
39 40 1.615883 CCCTCGGTCTCAGTATCATGG 59.384 57.143 0.00 0.00 0.00 3.66
40 41 2.311463 CCTCGGTCTCAGTATCATGGT 58.689 52.381 0.00 0.00 0.00 3.55
41 42 2.035193 CCTCGGTCTCAGTATCATGGTG 59.965 54.545 0.00 0.00 0.00 4.17
42 43 2.031870 TCGGTCTCAGTATCATGGTGG 58.968 52.381 0.00 0.00 0.00 4.61
43 44 2.031870 CGGTCTCAGTATCATGGTGGA 58.968 52.381 0.00 0.00 0.00 4.02
44 45 2.223829 CGGTCTCAGTATCATGGTGGAC 60.224 54.545 0.00 0.00 0.00 4.02
45 46 2.766263 GGTCTCAGTATCATGGTGGACA 59.234 50.000 0.00 0.00 0.00 4.02
46 47 3.430929 GGTCTCAGTATCATGGTGGACAC 60.431 52.174 0.00 0.00 0.00 3.67
59 60 2.034687 GACACCATGGCCACTGCT 59.965 61.111 8.16 0.00 37.74 4.24
60 61 2.282674 ACACCATGGCCACTGCTG 60.283 61.111 8.16 1.15 37.74 4.41
61 62 2.034532 CACCATGGCCACTGCTGA 59.965 61.111 8.16 0.00 37.74 4.26
62 63 1.604308 CACCATGGCCACTGCTGAA 60.604 57.895 8.16 0.00 37.74 3.02
63 64 0.968901 CACCATGGCCACTGCTGAAT 60.969 55.000 8.16 0.00 37.74 2.57
64 65 0.968901 ACCATGGCCACTGCTGAATG 60.969 55.000 8.16 0.00 37.74 2.67
65 66 0.968901 CCATGGCCACTGCTGAATGT 60.969 55.000 8.16 0.00 37.74 2.71
66 67 0.892755 CATGGCCACTGCTGAATGTT 59.107 50.000 8.16 0.00 37.74 2.71
67 68 0.892755 ATGGCCACTGCTGAATGTTG 59.107 50.000 8.16 0.00 37.74 3.33
68 69 0.467844 TGGCCACTGCTGAATGTTGT 60.468 50.000 0.00 0.00 37.74 3.32
69 70 0.038892 GGCCACTGCTGAATGTTGTG 60.039 55.000 0.00 0.00 37.74 3.33
70 71 0.665369 GCCACTGCTGAATGTTGTGC 60.665 55.000 0.00 0.00 33.53 4.57
71 72 0.038892 CCACTGCTGAATGTTGTGCC 60.039 55.000 0.00 0.00 0.00 5.01
72 73 0.038892 CACTGCTGAATGTTGTGCCC 60.039 55.000 0.00 0.00 0.00 5.36
73 74 0.467844 ACTGCTGAATGTTGTGCCCA 60.468 50.000 0.00 0.00 0.00 5.36
74 75 0.242825 CTGCTGAATGTTGTGCCCAG 59.757 55.000 0.00 0.00 0.00 4.45
75 76 1.080298 GCTGAATGTTGTGCCCAGC 60.080 57.895 0.00 0.00 42.52 4.85
76 77 1.808531 GCTGAATGTTGTGCCCAGCA 61.809 55.000 0.00 0.00 46.68 4.41
77 78 0.675083 CTGAATGTTGTGCCCAGCAA 59.325 50.000 0.00 0.00 41.47 3.91
78 79 0.675083 TGAATGTTGTGCCCAGCAAG 59.325 50.000 0.00 0.00 41.47 4.01
79 80 0.675633 GAATGTTGTGCCCAGCAAGT 59.324 50.000 0.00 0.00 41.47 3.16
80 81 0.675633 AATGTTGTGCCCAGCAAGTC 59.324 50.000 0.00 0.00 41.47 3.01
81 82 0.467844 ATGTTGTGCCCAGCAAGTCA 60.468 50.000 0.00 0.00 41.47 3.41
82 83 0.682532 TGTTGTGCCCAGCAAGTCAA 60.683 50.000 0.00 0.00 41.47 3.18
83 84 0.031178 GTTGTGCCCAGCAAGTCAAG 59.969 55.000 0.00 0.00 41.47 3.02
84 85 1.108727 TTGTGCCCAGCAAGTCAAGG 61.109 55.000 0.00 0.00 41.47 3.61
85 86 1.228245 GTGCCCAGCAAGTCAAGGA 60.228 57.895 0.00 0.00 41.47 3.36
86 87 0.610232 GTGCCCAGCAAGTCAAGGAT 60.610 55.000 0.00 0.00 41.47 3.24
87 88 0.991146 TGCCCAGCAAGTCAAGGATA 59.009 50.000 0.00 0.00 34.76 2.59
88 89 1.340017 TGCCCAGCAAGTCAAGGATAC 60.340 52.381 0.00 0.00 34.76 2.24
89 90 1.340017 GCCCAGCAAGTCAAGGATACA 60.340 52.381 0.00 0.00 41.41 2.29
90 91 2.879756 GCCCAGCAAGTCAAGGATACAA 60.880 50.000 0.00 0.00 41.41 2.41
91 92 3.624777 CCCAGCAAGTCAAGGATACAAT 58.375 45.455 0.00 0.00 41.41 2.71
92 93 4.780815 CCCAGCAAGTCAAGGATACAATA 58.219 43.478 0.00 0.00 41.41 1.90
93 94 4.818546 CCCAGCAAGTCAAGGATACAATAG 59.181 45.833 0.00 0.00 41.41 1.73
94 95 5.431765 CCAGCAAGTCAAGGATACAATAGT 58.568 41.667 0.00 0.00 41.41 2.12
95 96 5.295292 CCAGCAAGTCAAGGATACAATAGTG 59.705 44.000 0.00 0.00 41.41 2.74
96 97 5.877012 CAGCAAGTCAAGGATACAATAGTGT 59.123 40.000 0.00 0.00 42.09 3.55
97 98 6.372659 CAGCAAGTCAAGGATACAATAGTGTT 59.627 38.462 0.00 0.00 39.30 3.32
98 99 6.372659 AGCAAGTCAAGGATACAATAGTGTTG 59.627 38.462 0.00 0.00 39.30 3.33
99 100 6.371548 GCAAGTCAAGGATACAATAGTGTTGA 59.628 38.462 0.00 0.00 39.30 3.18
100 101 7.094805 GCAAGTCAAGGATACAATAGTGTTGAA 60.095 37.037 0.00 0.00 39.30 2.69
101 102 8.446273 CAAGTCAAGGATACAATAGTGTTGAAG 58.554 37.037 0.00 0.00 39.30 3.02
102 103 7.106239 AGTCAAGGATACAATAGTGTTGAAGG 58.894 38.462 0.00 0.00 39.30 3.46
103 104 5.880332 TCAAGGATACAATAGTGTTGAAGGC 59.120 40.000 0.00 0.00 39.30 4.35
104 105 5.435686 AGGATACAATAGTGTTGAAGGCA 57.564 39.130 0.00 0.00 39.30 4.75
105 106 6.006275 AGGATACAATAGTGTTGAAGGCAT 57.994 37.500 0.00 0.00 39.30 4.40
106 107 5.824624 AGGATACAATAGTGTTGAAGGCATG 59.175 40.000 0.00 0.00 39.30 4.06
107 108 5.009010 GGATACAATAGTGTTGAAGGCATGG 59.991 44.000 0.00 0.00 39.30 3.66
108 109 2.493278 ACAATAGTGTTGAAGGCATGGC 59.507 45.455 12.14 12.14 32.58 4.40
109 110 4.686348 ACAATAGTGTTGAAGGCATGGCC 61.686 47.826 16.82 6.86 41.92 5.36
120 121 3.440151 CATGGCCTATGCACCTGC 58.560 61.111 3.32 0.00 40.13 4.85
121 122 2.196776 ATGGCCTATGCACCTGCC 59.803 61.111 13.75 13.75 44.27 4.85
122 123 2.389449 ATGGCCTATGCACCTGCCT 61.389 57.895 19.43 6.19 44.32 4.75
123 124 1.061905 ATGGCCTATGCACCTGCCTA 61.062 55.000 19.43 9.28 44.32 3.93
124 125 1.061905 TGGCCTATGCACCTGCCTAT 61.062 55.000 19.43 0.00 44.32 2.57
125 126 0.111253 GGCCTATGCACCTGCCTATT 59.889 55.000 13.44 0.00 40.77 1.73
126 127 1.351017 GGCCTATGCACCTGCCTATTA 59.649 52.381 13.44 0.00 40.77 0.98
127 128 2.025887 GGCCTATGCACCTGCCTATTAT 60.026 50.000 13.44 0.00 40.77 1.28
128 129 3.562176 GGCCTATGCACCTGCCTATTATT 60.562 47.826 13.44 0.00 40.77 1.40
129 130 4.324254 GGCCTATGCACCTGCCTATTATTA 60.324 45.833 13.44 0.00 40.77 0.98
130 131 4.636206 GCCTATGCACCTGCCTATTATTAC 59.364 45.833 0.00 0.00 41.18 1.89
131 132 5.803145 GCCTATGCACCTGCCTATTATTACA 60.803 44.000 0.00 0.00 41.18 2.41
132 133 6.237901 CCTATGCACCTGCCTATTATTACAA 58.762 40.000 0.00 0.00 41.18 2.41
133 134 6.149474 CCTATGCACCTGCCTATTATTACAAC 59.851 42.308 0.00 0.00 41.18 3.32
134 135 4.849518 TGCACCTGCCTATTATTACAACA 58.150 39.130 0.00 0.00 41.18 3.33
135 136 5.257262 TGCACCTGCCTATTATTACAACAA 58.743 37.500 0.00 0.00 41.18 2.83
136 137 5.712446 TGCACCTGCCTATTATTACAACAAA 59.288 36.000 0.00 0.00 41.18 2.83
137 138 6.033966 GCACCTGCCTATTATTACAACAAAC 58.966 40.000 0.00 0.00 34.31 2.93
138 139 6.560711 CACCTGCCTATTATTACAACAAACC 58.439 40.000 0.00 0.00 0.00 3.27
139 140 5.655090 ACCTGCCTATTATTACAACAAACCC 59.345 40.000 0.00 0.00 0.00 4.11
140 141 5.654650 CCTGCCTATTATTACAACAAACCCA 59.345 40.000 0.00 0.00 0.00 4.51
141 142 6.153680 CCTGCCTATTATTACAACAAACCCAA 59.846 38.462 0.00 0.00 0.00 4.12
142 143 7.310113 CCTGCCTATTATTACAACAAACCCAAA 60.310 37.037 0.00 0.00 0.00 3.28
143 144 7.607250 TGCCTATTATTACAACAAACCCAAAG 58.393 34.615 0.00 0.00 0.00 2.77
144 145 7.451877 TGCCTATTATTACAACAAACCCAAAGA 59.548 33.333 0.00 0.00 0.00 2.52
145 146 8.308207 GCCTATTATTACAACAAACCCAAAGAA 58.692 33.333 0.00 0.00 0.00 2.52
146 147 9.855021 CCTATTATTACAACAAACCCAAAGAAG 57.145 33.333 0.00 0.00 0.00 2.85
151 152 7.892778 TTACAACAAACCCAAAGAAGAAAAC 57.107 32.000 0.00 0.00 0.00 2.43
152 153 5.859495 ACAACAAACCCAAAGAAGAAAACA 58.141 33.333 0.00 0.00 0.00 2.83
153 154 6.292150 ACAACAAACCCAAAGAAGAAAACAA 58.708 32.000 0.00 0.00 0.00 2.83
154 155 6.203915 ACAACAAACCCAAAGAAGAAAACAAC 59.796 34.615 0.00 0.00 0.00 3.32
155 156 5.859495 ACAAACCCAAAGAAGAAAACAACA 58.141 33.333 0.00 0.00 0.00 3.33
156 157 5.699001 ACAAACCCAAAGAAGAAAACAACAC 59.301 36.000 0.00 0.00 0.00 3.32
157 158 5.738619 AACCCAAAGAAGAAAACAACACT 57.261 34.783 0.00 0.00 0.00 3.55
158 159 5.738619 ACCCAAAGAAGAAAACAACACTT 57.261 34.783 0.00 0.00 0.00 3.16
159 160 6.844097 ACCCAAAGAAGAAAACAACACTTA 57.156 33.333 0.00 0.00 0.00 2.24
160 161 7.234661 ACCCAAAGAAGAAAACAACACTTAA 57.765 32.000 0.00 0.00 0.00 1.85
161 162 7.847096 ACCCAAAGAAGAAAACAACACTTAAT 58.153 30.769 0.00 0.00 0.00 1.40
162 163 8.318412 ACCCAAAGAAGAAAACAACACTTAATT 58.682 29.630 0.00 0.00 0.00 1.40
163 164 9.810545 CCCAAAGAAGAAAACAACACTTAATTA 57.189 29.630 0.00 0.00 0.00 1.40
167 168 9.736023 AAGAAGAAAACAACACTTAATTAGCAG 57.264 29.630 0.00 0.00 0.00 4.24
168 169 9.120538 AGAAGAAAACAACACTTAATTAGCAGA 57.879 29.630 0.00 0.00 0.00 4.26
169 170 9.387123 GAAGAAAACAACACTTAATTAGCAGAG 57.613 33.333 0.00 0.00 0.00 3.35
170 171 7.875971 AGAAAACAACACTTAATTAGCAGAGG 58.124 34.615 0.00 0.00 0.00 3.69
171 172 7.719633 AGAAAACAACACTTAATTAGCAGAGGA 59.280 33.333 0.00 0.00 0.00 3.71
172 173 6.803154 AACAACACTTAATTAGCAGAGGAC 57.197 37.500 0.00 0.00 0.00 3.85
173 174 5.865085 ACAACACTTAATTAGCAGAGGACA 58.135 37.500 0.00 0.00 0.00 4.02
174 175 6.476378 ACAACACTTAATTAGCAGAGGACAT 58.524 36.000 0.00 0.00 0.00 3.06
175 176 6.372659 ACAACACTTAATTAGCAGAGGACATG 59.627 38.462 0.00 0.00 0.00 3.21
176 177 6.299805 ACACTTAATTAGCAGAGGACATGA 57.700 37.500 0.00 0.00 0.00 3.07
177 178 6.893583 ACACTTAATTAGCAGAGGACATGAT 58.106 36.000 0.00 0.00 0.00 2.45
178 179 7.341805 ACACTTAATTAGCAGAGGACATGATT 58.658 34.615 0.00 0.00 0.00 2.57
179 180 8.486210 ACACTTAATTAGCAGAGGACATGATTA 58.514 33.333 0.00 0.00 0.00 1.75
180 181 9.330063 CACTTAATTAGCAGAGGACATGATTAA 57.670 33.333 0.00 0.00 0.00 1.40
186 187 9.717942 ATTAGCAGAGGACATGATTAATCTAAC 57.282 33.333 16.24 5.70 0.00 2.34
187 188 7.129457 AGCAGAGGACATGATTAATCTAACA 57.871 36.000 16.24 0.00 0.00 2.41
188 189 7.743749 AGCAGAGGACATGATTAATCTAACAT 58.256 34.615 16.24 0.00 0.00 2.71
189 190 8.216423 AGCAGAGGACATGATTAATCTAACATT 58.784 33.333 16.24 0.00 0.00 2.71
190 191 8.502387 GCAGAGGACATGATTAATCTAACATTC 58.498 37.037 16.24 7.87 0.00 2.67
191 192 8.997323 CAGAGGACATGATTAATCTAACATTCC 58.003 37.037 16.24 12.11 0.00 3.01
192 193 8.943085 AGAGGACATGATTAATCTAACATTCCT 58.057 33.333 16.24 15.76 35.37 3.36
193 194 9.566432 GAGGACATGATTAATCTAACATTCCTT 57.434 33.333 16.24 4.71 34.21 3.36
230 231 8.861033 TTTGCTTTGTTCATGATAGATAATGC 57.139 30.769 0.00 1.59 0.00 3.56
231 232 6.973843 TGCTTTGTTCATGATAGATAATGCC 58.026 36.000 0.00 0.00 0.00 4.40
232 233 6.774170 TGCTTTGTTCATGATAGATAATGCCT 59.226 34.615 0.00 0.00 0.00 4.75
233 234 7.286087 TGCTTTGTTCATGATAGATAATGCCTT 59.714 33.333 0.00 0.00 0.00 4.35
234 235 7.594015 GCTTTGTTCATGATAGATAATGCCTTG 59.406 37.037 0.00 0.00 0.00 3.61
235 236 8.523915 TTTGTTCATGATAGATAATGCCTTGT 57.476 30.769 0.00 0.00 0.00 3.16
236 237 7.500720 TGTTCATGATAGATAATGCCTTGTG 57.499 36.000 0.00 0.00 0.00 3.33
237 238 7.281841 TGTTCATGATAGATAATGCCTTGTGA 58.718 34.615 0.00 0.00 0.00 3.58
238 239 7.774625 TGTTCATGATAGATAATGCCTTGTGAA 59.225 33.333 0.00 0.00 0.00 3.18
239 240 8.790718 GTTCATGATAGATAATGCCTTGTGAAT 58.209 33.333 0.00 0.00 0.00 2.57
240 241 8.929260 TCATGATAGATAATGCCTTGTGAATT 57.071 30.769 0.00 0.00 0.00 2.17
241 242 9.358406 TCATGATAGATAATGCCTTGTGAATTT 57.642 29.630 0.00 0.00 0.00 1.82
242 243 9.976511 CATGATAGATAATGCCTTGTGAATTTT 57.023 29.630 0.00 0.00 0.00 1.82
244 245 9.412460 TGATAGATAATGCCTTGTGAATTTTCT 57.588 29.630 0.00 0.00 0.00 2.52
247 248 6.815142 AGATAATGCCTTGTGAATTTTCTTGC 59.185 34.615 0.00 0.00 0.00 4.01
248 249 2.741612 TGCCTTGTGAATTTTCTTGCG 58.258 42.857 0.00 0.00 0.00 4.85
249 250 2.061028 GCCTTGTGAATTTTCTTGCGG 58.939 47.619 0.00 0.00 0.00 5.69
250 251 2.288152 GCCTTGTGAATTTTCTTGCGGA 60.288 45.455 0.00 0.00 0.00 5.54
251 252 3.614870 GCCTTGTGAATTTTCTTGCGGAT 60.615 43.478 0.00 0.00 0.00 4.18
252 253 4.559153 CCTTGTGAATTTTCTTGCGGATT 58.441 39.130 0.00 0.00 0.00 3.01
253 254 4.386652 CCTTGTGAATTTTCTTGCGGATTG 59.613 41.667 0.00 0.00 0.00 2.67
254 255 4.844998 TGTGAATTTTCTTGCGGATTGA 57.155 36.364 0.00 0.00 0.00 2.57
255 256 5.389859 TGTGAATTTTCTTGCGGATTGAT 57.610 34.783 0.00 0.00 0.00 2.57
256 257 5.162794 TGTGAATTTTCTTGCGGATTGATG 58.837 37.500 0.00 0.00 0.00 3.07
257 258 5.048154 TGTGAATTTTCTTGCGGATTGATGA 60.048 36.000 0.00 0.00 0.00 2.92
258 259 5.863397 GTGAATTTTCTTGCGGATTGATGAA 59.137 36.000 0.00 0.00 0.00 2.57
259 260 6.365789 GTGAATTTTCTTGCGGATTGATGAAA 59.634 34.615 0.00 0.00 0.00 2.69
260 261 7.063780 GTGAATTTTCTTGCGGATTGATGAAAT 59.936 33.333 0.00 0.00 0.00 2.17
261 262 6.897259 ATTTTCTTGCGGATTGATGAAATG 57.103 33.333 0.00 0.00 0.00 2.32
262 263 5.389859 TTTCTTGCGGATTGATGAAATGT 57.610 34.783 0.00 0.00 0.00 2.71
263 264 5.389859 TTCTTGCGGATTGATGAAATGTT 57.610 34.783 0.00 0.00 0.00 2.71
264 265 5.389859 TCTTGCGGATTGATGAAATGTTT 57.610 34.783 0.00 0.00 0.00 2.83
265 266 5.162794 TCTTGCGGATTGATGAAATGTTTG 58.837 37.500 0.00 0.00 0.00 2.93
266 267 3.847542 TGCGGATTGATGAAATGTTTGG 58.152 40.909 0.00 0.00 0.00 3.28
267 268 3.509184 TGCGGATTGATGAAATGTTTGGA 59.491 39.130 0.00 0.00 0.00 3.53
268 269 4.160065 TGCGGATTGATGAAATGTTTGGAT 59.840 37.500 0.00 0.00 0.00 3.41
269 270 5.359292 TGCGGATTGATGAAATGTTTGGATA 59.641 36.000 0.00 0.00 0.00 2.59
270 271 6.040729 TGCGGATTGATGAAATGTTTGGATAT 59.959 34.615 0.00 0.00 0.00 1.63
271 272 7.230309 TGCGGATTGATGAAATGTTTGGATATA 59.770 33.333 0.00 0.00 0.00 0.86
272 273 8.246180 GCGGATTGATGAAATGTTTGGATATAT 58.754 33.333 0.00 0.00 0.00 0.86
273 274 9.778993 CGGATTGATGAAATGTTTGGATATATC 57.221 33.333 3.96 3.96 0.00 1.63
327 328 9.034800 ACTATAATTTCCCTCAAGAAATGCAAA 57.965 29.630 0.00 0.00 43.90 3.68
328 329 9.874205 CTATAATTTCCCTCAAGAAATGCAAAA 57.126 29.630 0.00 0.00 43.90 2.44
354 355 1.730547 GTGGACGCACATGCTTTGC 60.731 57.895 1.82 0.00 39.32 3.68
364 365 2.411748 CACATGCTTTGCAAATGCTCTG 59.588 45.455 24.26 22.34 46.10 3.35
371 382 5.107133 GCTTTGCAAATGCTCTGTATCATT 58.893 37.500 13.23 0.00 42.99 2.57
378 389 6.073331 GCAAATGCTCTGTATCATTCCTAGTC 60.073 42.308 0.00 0.00 38.21 2.59
452 463 8.547894 TGATTATCTTAACGATATGCACAACAC 58.452 33.333 0.00 0.00 34.68 3.32
459 470 4.174009 ACGATATGCACAACACTACAGAC 58.826 43.478 0.00 0.00 0.00 3.51
466 477 5.424757 TGCACAACACTACAGACTTAGTTT 58.575 37.500 0.00 0.00 29.30 2.66
489 500 4.511454 TGACAAACTGACGGAATCTTGAAG 59.489 41.667 0.00 0.00 0.00 3.02
506 517 8.738645 ATCTTGAAGAAACCTTCATATGTACC 57.261 34.615 0.00 0.00 46.49 3.34
570 581 5.800296 TCCTTGACATGTAAAGGAATTCGA 58.200 37.500 34.14 16.38 45.14 3.71
571 582 6.414732 TCCTTGACATGTAAAGGAATTCGAT 58.585 36.000 34.14 0.00 45.14 3.59
572 583 6.316140 TCCTTGACATGTAAAGGAATTCGATG 59.684 38.462 34.14 11.74 45.14 3.84
573 584 6.316140 CCTTGACATGTAAAGGAATTCGATGA 59.684 38.462 31.60 0.00 42.78 2.92
577 588 8.183536 TGACATGTAAAGGAATTCGATGAAATG 58.816 33.333 0.00 2.83 0.00 2.32
605 646 6.145696 GTCATCGTCTACTTTTGCAAGTTACT 59.854 38.462 0.00 0.00 40.66 2.24
656 698 7.200455 GCCACACAAGATTACAAACTTAGTTT 58.800 34.615 4.30 4.30 36.05 2.66
685 727 7.824289 TGCAAGACAAGCTAATCTAGTTTATGT 59.176 33.333 0.27 0.00 0.00 2.29
744 786 1.299541 ATGTTGCAATCCGGATCGAC 58.700 50.000 19.43 16.16 0.00 4.20
848 890 3.325293 ACTTCGATGATCAGTGCAAGT 57.675 42.857 5.16 4.11 0.00 3.16
1133 1175 2.981898 ACCCTTTACTGCATTCCGTAC 58.018 47.619 0.00 0.00 0.00 3.67
1182 1224 0.535780 CAGAGCAGCAACCAACTCCA 60.536 55.000 0.00 0.00 0.00 3.86
1197 1239 1.064758 ACTCCACAGCCACAAGAACAA 60.065 47.619 0.00 0.00 0.00 2.83
1455 1497 1.529010 CACCCAACCTCAGCAGCAA 60.529 57.895 0.00 0.00 0.00 3.91
1625 1679 2.785269 ACACCACCATATCACCATCCAT 59.215 45.455 0.00 0.00 0.00 3.41
1659 1713 1.068753 CATGGGCGGCTACTGAGAG 59.931 63.158 9.56 0.00 0.00 3.20
1677 1739 6.127675 ACTGAGAGGTCTAGTATCCGAAAAAC 60.128 42.308 0.00 0.00 0.00 2.43
1783 1847 3.634910 GGCACTAGTTCAAACTTGGGAAA 59.365 43.478 10.19 0.00 37.35 3.13
1836 1900 4.081322 AGTGTTATTGGTCGGTGTTTCT 57.919 40.909 0.00 0.00 0.00 2.52
1916 2239 8.244113 AGCTTTGTATGTAGCAAAATAACCTTC 58.756 33.333 0.00 0.00 39.85 3.46
1917 2240 7.218204 GCTTTGTATGTAGCAAAATAACCTTCG 59.782 37.037 0.00 0.00 35.71 3.79
1936 2261 8.343168 ACCTTCGAAATAATCAAATGGTTGTA 57.657 30.769 0.00 0.00 36.07 2.41
1981 2306 7.664961 TCCCTATTAAGGTAAGGAGTAAGGAA 58.335 38.462 0.00 0.00 41.89 3.36
1982 2307 7.566509 TCCCTATTAAGGTAAGGAGTAAGGAAC 59.433 40.741 0.00 0.00 41.89 3.62
1983 2308 7.567994 CCCTATTAAGGTAAGGAGTAAGGAACT 59.432 40.741 0.00 0.00 41.89 3.01
1984 2309 9.652114 CCTATTAAGGTAAGGAGTAAGGAACTA 57.348 37.037 0.00 0.00 36.97 2.24
1987 2312 6.870895 AAGGTAAGGAGTAAGGAACTAAGG 57.129 41.667 0.00 0.00 38.49 2.69
1988 2313 6.163110 AGGTAAGGAGTAAGGAACTAAGGA 57.837 41.667 0.00 0.00 38.49 3.36
2001 2326 5.368816 AGGAACTAAGGACTAACCACAAACT 59.631 40.000 0.00 0.00 38.00 2.66
2015 2340 6.327279 ACCACAAACTAACTCTTTAATGGC 57.673 37.500 0.00 0.00 0.00 4.40
2028 2353 2.779755 TAATGGCGAGCCTTCTGAAA 57.220 45.000 15.75 0.00 36.94 2.69
2083 2491 9.507329 AGTTCTAAATAGTATATGGCATTGGTG 57.493 33.333 4.78 0.00 0.00 4.17
2098 2506 2.673775 TGGTGTCAATGTGGTCCATT 57.326 45.000 0.00 0.00 44.73 3.16
2112 2520 6.919721 TGTGGTCCATTTAAGATTTTACTGC 58.080 36.000 0.00 0.00 0.00 4.40
2119 2527 8.646900 TCCATTTAAGATTTTACTGCTGGTTTT 58.353 29.630 0.00 0.00 0.00 2.43
2124 2532 6.076981 AGATTTTACTGCTGGTTTTGACTG 57.923 37.500 0.00 0.00 0.00 3.51
2142 2550 1.667724 CTGTAGAGAGCGGGCAATTTG 59.332 52.381 0.00 0.00 0.00 2.32
2190 2598 4.877378 ATTTTGCTCTCCAGAAAATGCA 57.123 36.364 0.00 0.00 30.05 3.96
2193 2601 5.981088 TTTGCTCTCCAGAAAATGCATTA 57.019 34.783 13.39 0.00 0.00 1.90
2238 2646 5.582689 AAACTCAAACAGACAAAGGAAGG 57.417 39.130 0.00 0.00 0.00 3.46
2249 2657 2.175715 ACAAAGGAAGGAAGCCACTCTT 59.824 45.455 0.00 0.00 37.83 2.85
2250 2658 3.225940 CAAAGGAAGGAAGCCACTCTTT 58.774 45.455 0.00 0.00 34.56 2.52
2251 2659 3.602205 AAGGAAGGAAGCCACTCTTTT 57.398 42.857 0.00 0.00 34.56 2.27
2252 2660 3.602205 AGGAAGGAAGCCACTCTTTTT 57.398 42.857 0.00 0.00 34.56 1.94
2253 2661 3.491342 AGGAAGGAAGCCACTCTTTTTC 58.509 45.455 0.00 0.00 34.56 2.29
2254 2662 2.558795 GGAAGGAAGCCACTCTTTTTCC 59.441 50.000 0.00 0.00 39.45 3.13
2255 2663 3.222603 GAAGGAAGCCACTCTTTTTCCA 58.777 45.455 5.07 0.00 41.19 3.53
2256 2664 2.587522 AGGAAGCCACTCTTTTTCCAC 58.412 47.619 5.07 0.00 41.19 4.02
2257 2665 2.175715 AGGAAGCCACTCTTTTTCCACT 59.824 45.455 5.07 0.00 41.19 4.00
2258 2666 2.554462 GGAAGCCACTCTTTTTCCACTC 59.446 50.000 0.00 0.00 39.09 3.51
2259 2667 3.481453 GAAGCCACTCTTTTTCCACTCT 58.519 45.455 0.00 0.00 34.56 3.24
2260 2668 2.856222 AGCCACTCTTTTTCCACTCTG 58.144 47.619 0.00 0.00 0.00 3.35
2261 2669 2.439507 AGCCACTCTTTTTCCACTCTGA 59.560 45.455 0.00 0.00 0.00 3.27
2262 2670 3.073650 AGCCACTCTTTTTCCACTCTGAT 59.926 43.478 0.00 0.00 0.00 2.90
2263 2671 3.823304 GCCACTCTTTTTCCACTCTGATT 59.177 43.478 0.00 0.00 0.00 2.57
2264 2672 4.320788 GCCACTCTTTTTCCACTCTGATTG 60.321 45.833 0.00 0.00 0.00 2.67
2265 2673 5.065914 CCACTCTTTTTCCACTCTGATTGA 58.934 41.667 0.00 0.00 0.00 2.57
2267 2675 5.994054 CACTCTTTTTCCACTCTGATTGAGA 59.006 40.000 0.00 0.00 45.39 3.27
2268 2676 6.654161 CACTCTTTTTCCACTCTGATTGAGAT 59.346 38.462 0.00 0.00 45.39 2.75
2269 2677 6.654161 ACTCTTTTTCCACTCTGATTGAGATG 59.346 38.462 0.00 0.00 45.39 2.90
2270 2678 5.413833 TCTTTTTCCACTCTGATTGAGATGC 59.586 40.000 0.00 0.00 45.39 3.91
2271 2679 2.996249 TCCACTCTGATTGAGATGCC 57.004 50.000 0.00 0.00 45.39 4.40
2272 2680 2.190538 TCCACTCTGATTGAGATGCCA 58.809 47.619 0.00 0.00 45.39 4.92
2273 2681 2.573009 TCCACTCTGATTGAGATGCCAA 59.427 45.455 0.00 0.00 45.39 4.52
2274 2682 3.201487 TCCACTCTGATTGAGATGCCAAT 59.799 43.478 0.00 0.00 45.39 3.16
2403 2812 0.776810 TCCATTTTCCCTGCTGTCCA 59.223 50.000 0.00 0.00 0.00 4.02
2415 2824 1.207089 TGCTGTCCAGGCAGTACATAC 59.793 52.381 11.25 0.00 38.65 2.39
2421 2830 4.100963 TGTCCAGGCAGTACATACATAAGG 59.899 45.833 0.00 0.00 0.00 2.69
2482 2891 8.916628 ATAAAGAAAAGGCCATCTTCTATCTC 57.083 34.615 16.03 0.00 34.90 2.75
2483 2892 4.954875 AGAAAAGGCCATCTTCTATCTCG 58.045 43.478 5.01 0.00 33.94 4.04
2516 2925 1.646189 GCTGTAGCTGGCTTGAGTAC 58.354 55.000 0.00 0.00 38.21 2.73
2530 2939 5.996513 GGCTTGAGTACTCATCATCATCATT 59.003 40.000 25.68 0.00 39.64 2.57
2534 2943 9.924650 CTTGAGTACTCATCATCATCATTATCA 57.075 33.333 25.68 4.64 39.64 2.15
2546 2955 9.561069 TCATCATCATTATCATCATCATCATCC 57.439 33.333 0.00 0.00 0.00 3.51
2547 2956 8.787852 CATCATCATTATCATCATCATCATCCC 58.212 37.037 0.00 0.00 0.00 3.85
2548 2957 7.867921 TCATCATTATCATCATCATCATCCCA 58.132 34.615 0.00 0.00 0.00 4.37
2549 2958 8.333235 TCATCATTATCATCATCATCATCCCAA 58.667 33.333 0.00 0.00 0.00 4.12
2550 2959 8.966868 CATCATTATCATCATCATCATCCCAAA 58.033 33.333 0.00 0.00 0.00 3.28
2551 2960 8.575649 TCATTATCATCATCATCATCCCAAAG 57.424 34.615 0.00 0.00 0.00 2.77
2552 2961 8.387813 TCATTATCATCATCATCATCCCAAAGA 58.612 33.333 0.00 0.00 0.00 2.52
2553 2962 9.020731 CATTATCATCATCATCATCCCAAAGAA 57.979 33.333 0.00 0.00 0.00 2.52
2554 2963 6.896021 ATCATCATCATCATCCCAAAGAAC 57.104 37.500 0.00 0.00 0.00 3.01
2555 2964 6.009908 TCATCATCATCATCCCAAAGAACT 57.990 37.500 0.00 0.00 0.00 3.01
2556 2965 7.140522 TCATCATCATCATCCCAAAGAACTA 57.859 36.000 0.00 0.00 0.00 2.24
2557 2966 7.222161 TCATCATCATCATCCCAAAGAACTAG 58.778 38.462 0.00 0.00 0.00 2.57
2558 2967 6.813293 TCATCATCATCCCAAAGAACTAGA 57.187 37.500 0.00 0.00 0.00 2.43
2559 2968 7.199167 TCATCATCATCCCAAAGAACTAGAA 57.801 36.000 0.00 0.00 0.00 2.10
2560 2969 7.278135 TCATCATCATCCCAAAGAACTAGAAG 58.722 38.462 0.00 0.00 0.00 2.85
2564 2973 6.935240 TCATCCCAAAGAACTAGAAGAGAA 57.065 37.500 0.00 0.00 0.00 2.87
2567 2976 6.996180 TCCCAAAGAACTAGAAGAGAAGAA 57.004 37.500 0.00 0.00 0.00 2.52
2587 2999 2.544721 AGAAGAAGATGCAGGACTGGA 58.455 47.619 1.01 0.00 34.81 3.86
2623 3035 4.964897 TCTCCTTCATGCTCTTCATCCTTA 59.035 41.667 0.00 0.00 31.79 2.69
2643 3055 1.360393 TGTCCCCAGGGCTTGTCTTT 61.360 55.000 0.00 0.00 34.68 2.52
2691 3103 1.372872 GTGCGGCAAATTCCACACC 60.373 57.895 3.23 0.00 34.08 4.16
2694 3106 1.805428 GCGGCAAATTCCACACCAGT 61.805 55.000 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.319405 GAAGCTTGCTGGCCAACAAT 59.681 50.000 21.42 7.59 0.00 2.71
1 2 1.741525 GAAGCTTGCTGGCCAACAA 59.258 52.632 20.08 20.08 0.00 2.83
2 3 2.202395 GGAAGCTTGCTGGCCAACA 61.202 57.895 11.19 5.56 0.00 3.33
3 4 2.653115 GGAAGCTTGCTGGCCAAC 59.347 61.111 11.19 1.82 0.00 3.77
4 5 2.601367 GGGAAGCTTGCTGGCCAA 60.601 61.111 18.04 0.00 0.00 4.52
5 6 3.574074 GAGGGAAGCTTGCTGGCCA 62.574 63.158 18.04 4.71 0.00 5.36
6 7 2.753446 GAGGGAAGCTTGCTGGCC 60.753 66.667 18.04 5.22 0.00 5.36
7 8 3.130160 CGAGGGAAGCTTGCTGGC 61.130 66.667 18.04 6.56 0.00 4.85
8 9 2.437359 CCGAGGGAAGCTTGCTGG 60.437 66.667 18.04 13.05 0.00 4.85
9 10 1.743252 GACCGAGGGAAGCTTGCTG 60.743 63.158 18.04 8.02 0.00 4.41
10 11 1.893919 GAGACCGAGGGAAGCTTGCT 61.894 60.000 18.04 3.79 0.00 3.91
11 12 1.448717 GAGACCGAGGGAAGCTTGC 60.449 63.158 9.87 9.87 0.00 4.01
12 13 0.108424 CTGAGACCGAGGGAAGCTTG 60.108 60.000 2.10 0.00 0.00 4.01
13 14 0.543174 ACTGAGACCGAGGGAAGCTT 60.543 55.000 0.00 0.00 0.00 3.74
14 15 0.331954 TACTGAGACCGAGGGAAGCT 59.668 55.000 0.00 0.00 0.00 3.74
15 16 1.338655 GATACTGAGACCGAGGGAAGC 59.661 57.143 0.00 0.00 0.00 3.86
16 17 2.656002 TGATACTGAGACCGAGGGAAG 58.344 52.381 0.00 0.00 0.00 3.46
17 18 2.820728 TGATACTGAGACCGAGGGAA 57.179 50.000 0.00 0.00 0.00 3.97
18 19 2.587522 CATGATACTGAGACCGAGGGA 58.412 52.381 0.00 0.00 0.00 4.20
19 20 1.615883 CCATGATACTGAGACCGAGGG 59.384 57.143 0.00 0.00 0.00 4.30
20 21 2.035193 CACCATGATACTGAGACCGAGG 59.965 54.545 0.00 0.00 0.00 4.63
21 22 2.035193 CCACCATGATACTGAGACCGAG 59.965 54.545 0.00 0.00 0.00 4.63
22 23 2.031870 CCACCATGATACTGAGACCGA 58.968 52.381 0.00 0.00 0.00 4.69
23 24 2.031870 TCCACCATGATACTGAGACCG 58.968 52.381 0.00 0.00 0.00 4.79
24 25 2.766263 TGTCCACCATGATACTGAGACC 59.234 50.000 0.00 0.00 0.00 3.85
25 26 3.786635 GTGTCCACCATGATACTGAGAC 58.213 50.000 0.00 0.00 0.00 3.36
40 41 2.435663 CAGTGGCCATGGTGTCCA 59.564 61.111 9.72 9.68 38.19 4.02
41 42 3.064324 GCAGTGGCCATGGTGTCC 61.064 66.667 9.72 6.78 0.00 4.02
42 43 2.034687 AGCAGTGGCCATGGTGTC 59.965 61.111 9.72 4.29 42.56 3.67
43 44 2.282674 CAGCAGTGGCCATGGTGT 60.283 61.111 26.12 5.71 42.56 4.16
44 45 0.968901 ATTCAGCAGTGGCCATGGTG 60.969 55.000 27.44 27.44 45.30 4.17
45 46 0.968901 CATTCAGCAGTGGCCATGGT 60.969 55.000 9.72 11.43 42.56 3.55
46 47 0.968901 ACATTCAGCAGTGGCCATGG 60.969 55.000 9.72 7.63 42.56 3.66
47 48 0.892755 AACATTCAGCAGTGGCCATG 59.107 50.000 9.72 9.86 42.56 3.66
48 49 0.892755 CAACATTCAGCAGTGGCCAT 59.107 50.000 9.72 0.00 42.56 4.40
49 50 0.467844 ACAACATTCAGCAGTGGCCA 60.468 50.000 0.00 0.00 42.56 5.36
50 51 0.038892 CACAACATTCAGCAGTGGCC 60.039 55.000 0.00 0.00 42.56 5.36
51 52 0.665369 GCACAACATTCAGCAGTGGC 60.665 55.000 0.00 0.00 41.61 5.01
52 53 0.038892 GGCACAACATTCAGCAGTGG 60.039 55.000 0.00 0.00 0.00 4.00
53 54 0.038892 GGGCACAACATTCAGCAGTG 60.039 55.000 0.00 0.00 0.00 3.66
54 55 0.467844 TGGGCACAACATTCAGCAGT 60.468 50.000 0.00 0.00 0.00 4.40
55 56 0.242825 CTGGGCACAACATTCAGCAG 59.757 55.000 0.00 0.00 0.00 4.24
56 57 1.808531 GCTGGGCACAACATTCAGCA 61.809 55.000 8.50 0.00 46.92 4.41
57 58 1.080298 GCTGGGCACAACATTCAGC 60.080 57.895 0.00 0.00 42.89 4.26
58 59 0.675083 TTGCTGGGCACAACATTCAG 59.325 50.000 0.00 0.00 38.71 3.02
59 60 0.675083 CTTGCTGGGCACAACATTCA 59.325 50.000 0.00 0.00 38.71 2.57
60 61 0.675633 ACTTGCTGGGCACAACATTC 59.324 50.000 0.00 0.00 38.71 2.67
61 62 0.675633 GACTTGCTGGGCACAACATT 59.324 50.000 0.00 0.00 38.71 2.71
62 63 0.467844 TGACTTGCTGGGCACAACAT 60.468 50.000 0.00 0.00 38.71 2.71
63 64 0.682532 TTGACTTGCTGGGCACAACA 60.683 50.000 0.00 0.00 38.71 3.33
64 65 0.031178 CTTGACTTGCTGGGCACAAC 59.969 55.000 0.00 0.00 38.71 3.32
65 66 1.108727 CCTTGACTTGCTGGGCACAA 61.109 55.000 0.00 0.00 38.71 3.33
66 67 1.529010 CCTTGACTTGCTGGGCACA 60.529 57.895 0.00 0.00 38.71 4.57
67 68 0.610232 ATCCTTGACTTGCTGGGCAC 60.610 55.000 0.00 0.00 38.71 5.01
68 69 0.991146 TATCCTTGACTTGCTGGGCA 59.009 50.000 0.00 0.00 36.47 5.36
69 70 1.340017 TGTATCCTTGACTTGCTGGGC 60.340 52.381 0.00 0.00 0.00 5.36
70 71 2.787473 TGTATCCTTGACTTGCTGGG 57.213 50.000 0.00 0.00 0.00 4.45
71 72 5.295292 CACTATTGTATCCTTGACTTGCTGG 59.705 44.000 0.00 0.00 0.00 4.85
72 73 5.877012 ACACTATTGTATCCTTGACTTGCTG 59.123 40.000 0.00 0.00 32.60 4.41
73 74 6.054860 ACACTATTGTATCCTTGACTTGCT 57.945 37.500 0.00 0.00 32.60 3.91
74 75 6.371548 TCAACACTATTGTATCCTTGACTTGC 59.628 38.462 0.00 0.00 33.55 4.01
75 76 7.905604 TCAACACTATTGTATCCTTGACTTG 57.094 36.000 0.00 0.00 33.55 3.16
76 77 7.607991 CCTTCAACACTATTGTATCCTTGACTT 59.392 37.037 0.00 0.00 33.55 3.01
77 78 7.106239 CCTTCAACACTATTGTATCCTTGACT 58.894 38.462 0.00 0.00 33.55 3.41
78 79 6.183360 GCCTTCAACACTATTGTATCCTTGAC 60.183 42.308 0.00 0.00 33.55 3.18
79 80 5.880332 GCCTTCAACACTATTGTATCCTTGA 59.120 40.000 0.00 0.00 33.55 3.02
80 81 5.647658 TGCCTTCAACACTATTGTATCCTTG 59.352 40.000 0.00 0.00 33.55 3.61
81 82 5.815581 TGCCTTCAACACTATTGTATCCTT 58.184 37.500 0.00 0.00 33.55 3.36
82 83 5.435686 TGCCTTCAACACTATTGTATCCT 57.564 39.130 0.00 0.00 33.55 3.24
83 84 5.009010 CCATGCCTTCAACACTATTGTATCC 59.991 44.000 0.00 0.00 33.55 2.59
84 85 5.506317 GCCATGCCTTCAACACTATTGTATC 60.506 44.000 0.00 0.00 33.55 2.24
85 86 4.339247 GCCATGCCTTCAACACTATTGTAT 59.661 41.667 0.00 0.00 33.55 2.29
86 87 3.694072 GCCATGCCTTCAACACTATTGTA 59.306 43.478 0.00 0.00 33.55 2.41
87 88 2.493278 GCCATGCCTTCAACACTATTGT 59.507 45.455 0.00 0.00 37.67 2.71
88 89 2.159198 GGCCATGCCTTCAACACTATTG 60.159 50.000 0.00 0.00 46.69 1.90
89 90 2.102578 GGCCATGCCTTCAACACTATT 58.897 47.619 0.00 0.00 46.69 1.73
90 91 1.767759 GGCCATGCCTTCAACACTAT 58.232 50.000 0.00 0.00 46.69 2.12
91 92 3.264574 GGCCATGCCTTCAACACTA 57.735 52.632 0.00 0.00 46.69 2.74
92 93 4.102113 GGCCATGCCTTCAACACT 57.898 55.556 0.00 0.00 46.69 3.55
103 104 2.198287 GGCAGGTGCATAGGCCATG 61.198 63.158 17.41 8.21 45.70 3.66
104 105 2.196776 GGCAGGTGCATAGGCCAT 59.803 61.111 17.41 0.00 45.70 4.40
106 107 0.111253 AATAGGCAGGTGCATAGGCC 59.889 55.000 15.29 15.29 46.77 5.19
107 108 2.859165 TAATAGGCAGGTGCATAGGC 57.141 50.000 4.01 0.00 40.79 3.93
108 109 5.804639 TGTAATAATAGGCAGGTGCATAGG 58.195 41.667 4.01 0.00 40.79 2.57
109 110 6.710295 TGTTGTAATAATAGGCAGGTGCATAG 59.290 38.462 4.01 0.00 40.79 2.23
110 111 6.596621 TGTTGTAATAATAGGCAGGTGCATA 58.403 36.000 4.01 0.93 44.36 3.14
111 112 5.445069 TGTTGTAATAATAGGCAGGTGCAT 58.555 37.500 4.01 0.00 44.36 3.96
112 113 4.849518 TGTTGTAATAATAGGCAGGTGCA 58.150 39.130 4.01 0.00 44.36 4.57
113 114 5.828299 TTGTTGTAATAATAGGCAGGTGC 57.172 39.130 0.00 0.00 41.14 5.01
114 115 6.405397 GGGTTTGTTGTAATAATAGGCAGGTG 60.405 42.308 0.00 0.00 0.00 4.00
115 116 5.655090 GGGTTTGTTGTAATAATAGGCAGGT 59.345 40.000 0.00 0.00 0.00 4.00
116 117 5.654650 TGGGTTTGTTGTAATAATAGGCAGG 59.345 40.000 0.00 0.00 0.00 4.85
117 118 6.767524 TGGGTTTGTTGTAATAATAGGCAG 57.232 37.500 0.00 0.00 0.00 4.85
118 119 7.451877 TCTTTGGGTTTGTTGTAATAATAGGCA 59.548 33.333 0.00 0.00 0.00 4.75
119 120 7.832769 TCTTTGGGTTTGTTGTAATAATAGGC 58.167 34.615 0.00 0.00 0.00 3.93
120 121 9.855021 CTTCTTTGGGTTTGTTGTAATAATAGG 57.145 33.333 0.00 0.00 0.00 2.57
125 126 9.589111 GTTTTCTTCTTTGGGTTTGTTGTAATA 57.411 29.630 0.00 0.00 0.00 0.98
126 127 8.097662 TGTTTTCTTCTTTGGGTTTGTTGTAAT 58.902 29.630 0.00 0.00 0.00 1.89
127 128 7.442656 TGTTTTCTTCTTTGGGTTTGTTGTAA 58.557 30.769 0.00 0.00 0.00 2.41
128 129 6.994221 TGTTTTCTTCTTTGGGTTTGTTGTA 58.006 32.000 0.00 0.00 0.00 2.41
129 130 5.859495 TGTTTTCTTCTTTGGGTTTGTTGT 58.141 33.333 0.00 0.00 0.00 3.32
130 131 6.203723 TGTTGTTTTCTTCTTTGGGTTTGTTG 59.796 34.615 0.00 0.00 0.00 3.33
131 132 6.203915 GTGTTGTTTTCTTCTTTGGGTTTGTT 59.796 34.615 0.00 0.00 0.00 2.83
132 133 5.699001 GTGTTGTTTTCTTCTTTGGGTTTGT 59.301 36.000 0.00 0.00 0.00 2.83
133 134 5.931724 AGTGTTGTTTTCTTCTTTGGGTTTG 59.068 36.000 0.00 0.00 0.00 2.93
134 135 6.109156 AGTGTTGTTTTCTTCTTTGGGTTT 57.891 33.333 0.00 0.00 0.00 3.27
135 136 5.738619 AGTGTTGTTTTCTTCTTTGGGTT 57.261 34.783 0.00 0.00 0.00 4.11
136 137 5.738619 AAGTGTTGTTTTCTTCTTTGGGT 57.261 34.783 0.00 0.00 0.00 4.51
137 138 8.716646 AATTAAGTGTTGTTTTCTTCTTTGGG 57.283 30.769 0.00 0.00 0.00 4.12
141 142 9.736023 CTGCTAATTAAGTGTTGTTTTCTTCTT 57.264 29.630 0.00 0.00 0.00 2.52
142 143 9.120538 TCTGCTAATTAAGTGTTGTTTTCTTCT 57.879 29.630 0.00 0.00 0.00 2.85
143 144 9.387123 CTCTGCTAATTAAGTGTTGTTTTCTTC 57.613 33.333 0.00 0.00 0.00 2.87
144 145 8.352942 CCTCTGCTAATTAAGTGTTGTTTTCTT 58.647 33.333 0.00 0.00 0.00 2.52
145 146 7.719633 TCCTCTGCTAATTAAGTGTTGTTTTCT 59.280 33.333 0.00 0.00 0.00 2.52
146 147 7.803659 GTCCTCTGCTAATTAAGTGTTGTTTTC 59.196 37.037 0.00 0.00 0.00 2.29
147 148 7.284489 TGTCCTCTGCTAATTAAGTGTTGTTTT 59.716 33.333 0.00 0.00 0.00 2.43
148 149 6.770785 TGTCCTCTGCTAATTAAGTGTTGTTT 59.229 34.615 0.00 0.00 0.00 2.83
149 150 6.296026 TGTCCTCTGCTAATTAAGTGTTGTT 58.704 36.000 0.00 0.00 0.00 2.83
150 151 5.865085 TGTCCTCTGCTAATTAAGTGTTGT 58.135 37.500 0.00 0.00 0.00 3.32
151 152 6.595326 TCATGTCCTCTGCTAATTAAGTGTTG 59.405 38.462 0.00 0.00 0.00 3.33
152 153 6.711277 TCATGTCCTCTGCTAATTAAGTGTT 58.289 36.000 0.00 0.00 0.00 3.32
153 154 6.299805 TCATGTCCTCTGCTAATTAAGTGT 57.700 37.500 0.00 0.00 0.00 3.55
154 155 7.798596 AATCATGTCCTCTGCTAATTAAGTG 57.201 36.000 0.00 0.00 0.00 3.16
160 161 9.717942 GTTAGATTAATCATGTCCTCTGCTAAT 57.282 33.333 17.56 0.00 0.00 1.73
161 162 8.704668 TGTTAGATTAATCATGTCCTCTGCTAA 58.295 33.333 17.56 0.62 0.00 3.09
162 163 8.250143 TGTTAGATTAATCATGTCCTCTGCTA 57.750 34.615 17.56 0.00 0.00 3.49
163 164 7.129457 TGTTAGATTAATCATGTCCTCTGCT 57.871 36.000 17.56 0.00 0.00 4.24
164 165 7.976135 ATGTTAGATTAATCATGTCCTCTGC 57.024 36.000 17.56 0.00 0.00 4.26
165 166 8.997323 GGAATGTTAGATTAATCATGTCCTCTG 58.003 37.037 17.56 0.00 0.00 3.35
166 167 8.943085 AGGAATGTTAGATTAATCATGTCCTCT 58.057 33.333 17.56 3.67 30.27 3.69
167 168 9.566432 AAGGAATGTTAGATTAATCATGTCCTC 57.434 33.333 17.56 7.03 32.46 3.71
204 205 9.304731 GCATTATCTATCATGAACAAAGCAAAA 57.695 29.630 0.00 0.00 0.00 2.44
205 206 7.922278 GGCATTATCTATCATGAACAAAGCAAA 59.078 33.333 0.00 0.00 0.00 3.68
206 207 7.286087 AGGCATTATCTATCATGAACAAAGCAA 59.714 33.333 0.00 0.00 0.00 3.91
207 208 6.774170 AGGCATTATCTATCATGAACAAAGCA 59.226 34.615 0.00 0.00 0.00 3.91
208 209 7.211966 AGGCATTATCTATCATGAACAAAGC 57.788 36.000 0.00 0.00 0.00 3.51
209 210 8.627403 ACAAGGCATTATCTATCATGAACAAAG 58.373 33.333 0.00 0.00 0.00 2.77
210 211 8.407832 CACAAGGCATTATCTATCATGAACAAA 58.592 33.333 0.00 0.00 0.00 2.83
211 212 7.774625 TCACAAGGCATTATCTATCATGAACAA 59.225 33.333 0.00 0.00 0.00 2.83
212 213 7.281841 TCACAAGGCATTATCTATCATGAACA 58.718 34.615 0.00 0.00 0.00 3.18
213 214 7.734924 TCACAAGGCATTATCTATCATGAAC 57.265 36.000 0.00 0.00 0.00 3.18
214 215 8.929260 ATTCACAAGGCATTATCTATCATGAA 57.071 30.769 0.00 0.00 0.00 2.57
215 216 8.929260 AATTCACAAGGCATTATCTATCATGA 57.071 30.769 0.00 0.00 0.00 3.07
216 217 9.976511 AAAATTCACAAGGCATTATCTATCATG 57.023 29.630 0.00 0.00 0.00 3.07
218 219 9.412460 AGAAAATTCACAAGGCATTATCTATCA 57.588 29.630 0.00 0.00 0.00 2.15
221 222 7.975616 GCAAGAAAATTCACAAGGCATTATCTA 59.024 33.333 0.00 0.00 0.00 1.98
222 223 6.815142 GCAAGAAAATTCACAAGGCATTATCT 59.185 34.615 0.00 0.00 0.00 1.98
223 224 6.237648 CGCAAGAAAATTCACAAGGCATTATC 60.238 38.462 0.00 0.00 43.02 1.75
224 225 5.577945 CGCAAGAAAATTCACAAGGCATTAT 59.422 36.000 0.00 0.00 43.02 1.28
225 226 4.922692 CGCAAGAAAATTCACAAGGCATTA 59.077 37.500 0.00 0.00 43.02 1.90
226 227 3.742369 CGCAAGAAAATTCACAAGGCATT 59.258 39.130 0.00 0.00 43.02 3.56
227 228 3.319755 CGCAAGAAAATTCACAAGGCAT 58.680 40.909 0.00 0.00 43.02 4.40
228 229 2.545532 CCGCAAGAAAATTCACAAGGCA 60.546 45.455 0.00 0.00 43.02 4.75
229 230 2.061028 CCGCAAGAAAATTCACAAGGC 58.939 47.619 0.00 0.00 43.02 4.35
230 231 3.641437 TCCGCAAGAAAATTCACAAGG 57.359 42.857 0.00 0.00 43.02 3.61
231 232 5.221880 TCAATCCGCAAGAAAATTCACAAG 58.778 37.500 0.00 0.00 43.02 3.16
232 233 5.193663 TCAATCCGCAAGAAAATTCACAA 57.806 34.783 0.00 0.00 43.02 3.33
233 234 4.844998 TCAATCCGCAAGAAAATTCACA 57.155 36.364 0.00 0.00 43.02 3.58
234 235 5.401550 TCATCAATCCGCAAGAAAATTCAC 58.598 37.500 0.00 0.00 43.02 3.18
235 236 5.641783 TCATCAATCCGCAAGAAAATTCA 57.358 34.783 0.00 0.00 43.02 2.57
236 237 6.949578 TTTCATCAATCCGCAAGAAAATTC 57.050 33.333 0.00 0.00 43.02 2.17
237 238 6.875195 ACATTTCATCAATCCGCAAGAAAATT 59.125 30.769 0.00 0.00 43.02 1.82
238 239 6.400568 ACATTTCATCAATCCGCAAGAAAAT 58.599 32.000 0.00 0.00 43.02 1.82
239 240 5.782047 ACATTTCATCAATCCGCAAGAAAA 58.218 33.333 0.00 0.00 43.02 2.29
240 241 5.389859 ACATTTCATCAATCCGCAAGAAA 57.610 34.783 0.00 0.00 43.02 2.52
241 242 5.389859 AACATTTCATCAATCCGCAAGAA 57.610 34.783 0.00 0.00 43.02 2.52
242 243 5.162794 CAAACATTTCATCAATCCGCAAGA 58.837 37.500 0.00 0.00 43.02 3.02
243 244 4.327898 CCAAACATTTCATCAATCCGCAAG 59.672 41.667 0.00 0.00 0.00 4.01
244 245 4.021632 TCCAAACATTTCATCAATCCGCAA 60.022 37.500 0.00 0.00 0.00 4.85
245 246 3.509184 TCCAAACATTTCATCAATCCGCA 59.491 39.130 0.00 0.00 0.00 5.69
246 247 4.108699 TCCAAACATTTCATCAATCCGC 57.891 40.909 0.00 0.00 0.00 5.54
247 248 9.778993 GATATATCCAAACATTTCATCAATCCG 57.221 33.333 0.81 0.00 0.00 4.18
354 355 6.426328 GGACTAGGAATGATACAGAGCATTTG 59.574 42.308 0.00 0.00 41.70 2.32
364 365 5.615925 AGTGTTGGGACTAGGAATGATAC 57.384 43.478 0.00 0.00 0.00 2.24
371 382 2.684943 TGACAAGTGTTGGGACTAGGA 58.315 47.619 0.00 0.00 34.12 2.94
466 477 4.066646 TCAAGATTCCGTCAGTTTGTCA 57.933 40.909 0.00 0.00 0.00 3.58
489 500 6.335777 ACACGTAGGTACATATGAAGGTTTC 58.664 40.000 13.43 0.00 0.00 2.78
569 580 7.706281 AAGTAGACGATGACATCATTTCATC 57.294 36.000 15.58 3.94 44.07 2.92
570 581 8.393366 CAAAAGTAGACGATGACATCATTTCAT 58.607 33.333 15.58 0.00 36.57 2.57
571 582 7.624134 GCAAAAGTAGACGATGACATCATTTCA 60.624 37.037 15.58 0.00 36.57 2.69
572 583 6.684555 GCAAAAGTAGACGATGACATCATTTC 59.315 38.462 15.58 8.13 36.57 2.17
573 584 6.149308 TGCAAAAGTAGACGATGACATCATTT 59.851 34.615 15.58 0.00 36.57 2.32
577 588 5.120830 ACTTGCAAAAGTAGACGATGACATC 59.879 40.000 5.28 5.28 0.00 3.06
616 657 3.278574 GTGTGGCCTGCAAAGATACATA 58.721 45.455 3.32 0.00 0.00 2.29
627 668 1.533625 TGTAATCTTGTGTGGCCTGC 58.466 50.000 3.32 0.00 0.00 4.85
656 698 3.423539 AGATTAGCTTGTCTTGCACCA 57.576 42.857 0.00 0.00 0.00 4.17
665 707 9.938280 TGTTACACATAAACTAGATTAGCTTGT 57.062 29.630 0.00 3.22 33.94 3.16
802 844 5.981088 TTGTTGTTGCATGTATCATTCCT 57.019 34.783 0.00 0.00 0.00 3.36
951 993 6.430925 GCCTATTTATAACTGACATGGCATCA 59.569 38.462 0.00 0.00 36.91 3.07
1149 1191 1.697982 TGCTCTGGAGATGATGGATGG 59.302 52.381 1.35 0.00 0.00 3.51
1182 1224 1.340991 ACTGGTTGTTCTTGTGGCTGT 60.341 47.619 0.00 0.00 0.00 4.40
1197 1239 4.277476 TCAACTTTTGATGTGGAACTGGT 58.723 39.130 0.00 0.00 33.81 4.00
1433 1475 0.178992 CTGCTGAGGTTGGGTGGAAA 60.179 55.000 0.00 0.00 0.00 3.13
1455 1497 4.202161 TGTTGTTGTTGACCTTGTTGTTGT 60.202 37.500 0.00 0.00 0.00 3.32
1625 1679 0.389296 CATGCCGGTAGTGACGTCAA 60.389 55.000 21.95 2.04 0.00 3.18
1677 1739 2.422597 TGACTAAACAATGCTGGTCCG 58.577 47.619 0.00 0.00 0.00 4.79
1687 1749 4.258543 GGATCGGACCATTGACTAAACAA 58.741 43.478 0.00 0.00 0.00 2.83
1817 1881 5.349270 CGAATAGAAACACCGACCAATAACA 59.651 40.000 0.00 0.00 0.00 2.41
1823 1887 1.066716 CCCGAATAGAAACACCGACCA 60.067 52.381 0.00 0.00 0.00 4.02
1824 1888 1.648504 CCCGAATAGAAACACCGACC 58.351 55.000 0.00 0.00 0.00 4.79
1836 1900 1.216977 CTCCACGTGTGCCCGAATA 59.783 57.895 15.65 0.00 0.00 1.75
1924 2249 6.826231 TCAGTCTGACTTTTACAACCATTTGA 59.174 34.615 7.77 0.00 36.48 2.69
1936 2261 4.161377 GGGATCTAGCTCAGTCTGACTTTT 59.839 45.833 7.77 0.00 0.00 2.27
1981 2306 7.289549 AGAGTTAGTTTGTGGTTAGTCCTTAGT 59.710 37.037 0.00 0.00 37.07 2.24
1982 2307 7.668492 AGAGTTAGTTTGTGGTTAGTCCTTAG 58.332 38.462 0.00 0.00 37.07 2.18
1983 2308 7.607615 AGAGTTAGTTTGTGGTTAGTCCTTA 57.392 36.000 0.00 0.00 37.07 2.69
1984 2309 6.496144 AGAGTTAGTTTGTGGTTAGTCCTT 57.504 37.500 0.00 0.00 37.07 3.36
1985 2310 6.496144 AAGAGTTAGTTTGTGGTTAGTCCT 57.504 37.500 0.00 0.00 37.07 3.85
1986 2311 8.667076 TTAAAGAGTTAGTTTGTGGTTAGTCC 57.333 34.615 0.00 0.00 0.00 3.85
1988 2313 9.063615 CCATTAAAGAGTTAGTTTGTGGTTAGT 57.936 33.333 0.00 0.00 0.00 2.24
2001 2326 3.906720 AGGCTCGCCATTAAAGAGTTA 57.093 42.857 11.02 0.00 38.92 2.24
2015 2340 3.077359 AGGTCAAATTTCAGAAGGCTCG 58.923 45.455 0.00 0.00 0.00 5.03
2028 2353 6.944290 TGTGAATCATCTCAAGAAGGTCAAAT 59.056 34.615 0.00 0.00 0.00 2.32
2098 2506 8.134895 CAGTCAAAACCAGCAGTAAAATCTTAA 58.865 33.333 0.00 0.00 0.00 1.85
2112 2520 2.989840 CGCTCTCTACAGTCAAAACCAG 59.010 50.000 0.00 0.00 0.00 4.00
2119 2527 0.898326 TTGCCCGCTCTCTACAGTCA 60.898 55.000 0.00 0.00 0.00 3.41
2124 2532 1.666189 GACAAATTGCCCGCTCTCTAC 59.334 52.381 0.00 0.00 0.00 2.59
2238 2646 3.251972 CAGAGTGGAAAAAGAGTGGCTTC 59.748 47.826 0.00 0.00 35.24 3.86
2249 2657 4.012374 GGCATCTCAATCAGAGTGGAAAA 58.988 43.478 0.00 0.00 44.98 2.29
2250 2658 3.009363 TGGCATCTCAATCAGAGTGGAAA 59.991 43.478 0.00 0.00 44.98 3.13
2251 2659 2.573009 TGGCATCTCAATCAGAGTGGAA 59.427 45.455 0.00 0.00 44.98 3.53
2252 2660 2.190538 TGGCATCTCAATCAGAGTGGA 58.809 47.619 0.00 0.00 44.98 4.02
2253 2661 2.704464 TGGCATCTCAATCAGAGTGG 57.296 50.000 0.00 0.00 44.98 4.00
2271 2679 3.129988 GGAGGAAGCAACCAATCAGATTG 59.870 47.826 15.40 15.40 39.94 2.67
2272 2680 3.359950 GGAGGAAGCAACCAATCAGATT 58.640 45.455 0.00 0.00 0.00 2.40
2273 2681 2.357569 GGGAGGAAGCAACCAATCAGAT 60.358 50.000 2.26 0.00 0.00 2.90
2274 2682 1.004745 GGGAGGAAGCAACCAATCAGA 59.995 52.381 2.26 0.00 0.00 3.27
2275 2683 1.005215 AGGGAGGAAGCAACCAATCAG 59.995 52.381 2.26 0.00 0.00 2.90
2276 2684 1.004745 GAGGGAGGAAGCAACCAATCA 59.995 52.381 2.26 0.00 0.00 2.57
2291 2699 2.649742 ATTCTGTGGAAGAGGAGGGA 57.350 50.000 0.00 0.00 35.91 4.20
2403 2812 7.814693 ATTATCCCTTATGTATGTACTGCCT 57.185 36.000 0.00 0.00 0.00 4.75
2415 2824 7.880160 TCCTTGTTGTGAATTATCCCTTATG 57.120 36.000 0.00 0.00 0.00 1.90
2421 2830 6.773976 TTCCATCCTTGTTGTGAATTATCC 57.226 37.500 0.00 0.00 0.00 2.59
2482 2891 3.912909 GCTACAGCTATGCTTCTAGAGCG 60.913 52.174 8.88 0.00 45.67 5.03
2483 2892 3.574614 GCTACAGCTATGCTTCTAGAGC 58.425 50.000 7.10 7.10 44.20 4.09
2530 2939 7.752638 AGTTCTTTGGGATGATGATGATGATA 58.247 34.615 0.00 0.00 0.00 2.15
2534 2943 7.384524 TCTAGTTCTTTGGGATGATGATGAT 57.615 36.000 0.00 0.00 0.00 2.45
2535 2944 6.813293 TCTAGTTCTTTGGGATGATGATGA 57.187 37.500 0.00 0.00 0.00 2.92
2536 2945 7.278135 TCTTCTAGTTCTTTGGGATGATGATG 58.722 38.462 0.00 0.00 0.00 3.07
2538 2947 6.669591 TCTCTTCTAGTTCTTTGGGATGATGA 59.330 38.462 0.00 0.00 0.00 2.92
2539 2948 6.882656 TCTCTTCTAGTTCTTTGGGATGATG 58.117 40.000 0.00 0.00 0.00 3.07
2541 2950 6.726299 TCTTCTCTTCTAGTTCTTTGGGATGA 59.274 38.462 0.00 0.00 0.00 2.92
2542 2951 6.940739 TCTTCTCTTCTAGTTCTTTGGGATG 58.059 40.000 0.00 0.00 0.00 3.51
2544 2953 6.782988 TCTTCTTCTCTTCTAGTTCTTTGGGA 59.217 38.462 0.00 0.00 0.00 4.37
2545 2954 6.998802 TCTTCTTCTCTTCTAGTTCTTTGGG 58.001 40.000 0.00 0.00 0.00 4.12
2546 2955 8.364142 TCTTCTTCTTCTCTTCTAGTTCTTTGG 58.636 37.037 0.00 0.00 0.00 3.28
2547 2956 9.757227 TTCTTCTTCTTCTCTTCTAGTTCTTTG 57.243 33.333 0.00 0.00 0.00 2.77
2548 2957 9.981114 CTTCTTCTTCTTCTCTTCTAGTTCTTT 57.019 33.333 0.00 0.00 0.00 2.52
2549 2958 9.362151 TCTTCTTCTTCTTCTCTTCTAGTTCTT 57.638 33.333 0.00 0.00 0.00 2.52
2550 2959 8.934023 TCTTCTTCTTCTTCTCTTCTAGTTCT 57.066 34.615 0.00 0.00 0.00 3.01
2551 2960 9.573133 CATCTTCTTCTTCTTCTCTTCTAGTTC 57.427 37.037 0.00 0.00 0.00 3.01
2552 2961 8.034804 GCATCTTCTTCTTCTTCTCTTCTAGTT 58.965 37.037 0.00 0.00 0.00 2.24
2553 2962 7.178274 TGCATCTTCTTCTTCTTCTCTTCTAGT 59.822 37.037 0.00 0.00 0.00 2.57
2554 2963 7.546358 TGCATCTTCTTCTTCTTCTCTTCTAG 58.454 38.462 0.00 0.00 0.00 2.43
2555 2964 7.363705 CCTGCATCTTCTTCTTCTTCTCTTCTA 60.364 40.741 0.00 0.00 0.00 2.10
2556 2965 6.357579 TGCATCTTCTTCTTCTTCTCTTCT 57.642 37.500 0.00 0.00 0.00 2.85
2557 2966 5.581874 CCTGCATCTTCTTCTTCTTCTCTTC 59.418 44.000 0.00 0.00 0.00 2.87
2558 2967 5.248020 TCCTGCATCTTCTTCTTCTTCTCTT 59.752 40.000 0.00 0.00 0.00 2.85
2559 2968 4.776837 TCCTGCATCTTCTTCTTCTTCTCT 59.223 41.667 0.00 0.00 0.00 3.10
2560 2969 4.869861 GTCCTGCATCTTCTTCTTCTTCTC 59.130 45.833 0.00 0.00 0.00 2.87
2564 2973 3.055240 CCAGTCCTGCATCTTCTTCTTCT 60.055 47.826 0.00 0.00 0.00 2.85
2567 2976 2.500910 CTCCAGTCCTGCATCTTCTTCT 59.499 50.000 0.00 0.00 0.00 2.85
2587 2999 0.616111 AAGGAGATGAGCACCGGACT 60.616 55.000 9.46 4.56 31.80 3.85
2623 3035 1.142688 AAGACAAGCCCTGGGGACAT 61.143 55.000 16.03 0.00 41.51 3.06
2643 3055 0.464373 GCGATTTGCCAGGGATCTGA 60.464 55.000 0.00 0.00 43.49 3.27
2691 3103 1.177401 TGAGGATGGAGACGACACTG 58.823 55.000 0.00 0.00 0.00 3.66
2694 3106 1.341976 TGGATGAGGATGGAGACGACA 60.342 52.381 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.