>input_sequence_70430
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-AGCACCCACCATTCACTCAACTGGAGAACAAACATTATCTAACACAAATCAACCATGAAGAAATTCCTCGTCCTTGCCC
TCATTGTTGTCGCGGCGACCACCACGGCCGCCGAACCCTTTACTGCATTCCGTACTGCTTGGGAGCCGCACCATCCATCA
TCTCCAGAGCAGCAACCAACTCCACAGCCACAAGAACAACCAGTTCCACATCAAAAGTTGAACCCATGCAGGGATGCCCT
CCTACAACAGTGTAGCCCAGTTGCTGATATGTCGTTCCTCCGGTCACAGGTGGTGCAACATAGCAGCTGCTTGGTAATGT
GGGAGCAGTGTTGTCAGCAACTAAAAGCGATCCCCAAGCAGTCAAGATGTGAGGCCATCCACAACGTCGTGCACGCCATC
GTTTTGCAACAGCAACAACAATTGGTACAAGGTATTTCCACCCAACCTCAGCAGCAACAACAACAAGGTCAACAACAACA
A---GGTCAGGGTTCTAGCCAGCCACAACAACAAACA---------CAACTGGATCAGGGTTGGATTGCGGTGATAGGGA
CATGGGTGATTCAGACCATTCCGGCAATGTGCGACGTGCATGTTCCACCATACTGCTACACCACCATATCACCATCCATT
GACGTCACTACCGGCATGGGCGGCTACTGAGAGG--------TCTAGTATCCGAAAAACGGACCAGCATTGTTTAGTCAA
TGGTCCGATCC--ATGTAGCGGTGAAAAATAAA-----------------------------------------------
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>chr1A_1_TraesCS1A01G007700
ATTGTTGGCCAGCAAGCTTCCCTCGGTCTCAGTATCATGGTGGACACCATGGCCACTGCTGAATGTTGTGCCCAGCAAGT
CAAGGATACAATAGTGTTGAAGGCATGGCCTATGCACCTGCCTATTATTACAACAAACCCAAAGAAGAAAACAACACTTA
ATTAGCAGAGGACATGATTAATCTAACATTCCTTAACATGTTTTTTTTGCTTTGTTCATGATAGATAATGCCTTGTGAAT
TTTCTTGCGGATTGATGAAATGTTTGGATATATCTATTCATACTAATATCTGCTAAATTGTACTATAATTTCCCTCAAGA
AATGCAAAAAAAAAATGTGGACGCACATGCTTTGCAAATGCTCTGTATC----------ATTCCTAGTCCCAACACTTGT
CATGAACAATCTTGAACAAATTCAGCAAACAATACTTGATTATCTTAACGATATGCACAACACTACAGACTTAGTTTGAC
AAACTGACGGAATCTTGAAGAAACCTTCATATGTACCTACGTGTAAATCCTTATACTAATCCTGTACAACATTACAATCC
TTGACATGTAAAGGAATTCGATGAAATGATGTCATC------------------------------GTCTACTTTTGCAA
GTTACTATACTAGTCTTATGTATCTTTGCAGGCCACACAAGATTACAAACTT-AGTTTGGTGCAAGACAAGCTAATCTAG
TTTATGTGTAACAACTTGTAGAATATAACAAACCCAGTTTTAGAAAATGTTGCAATCCGGATCGACGTTTGACATGTAAA
GTAAATAAGATGAGTTATGTCAATTATCAAGATTTGTTGATAGAGGAATGATACATGCAACAACAAAGAACTTCGATGAT
CAGTGCAAGTATATGCTTGTAAGCAGTTGCACCTAACGCAACATACCAAATGTTAGAGTCCGAGAAGCATCCATGCACTT
TTAAGAAAAGGAAATGCAAAGATGAAAAAAGGTGATGCCATGTCAGTTATAAATAGGCCTAAACAATCAAGACACTCCTC
CAGCACCCACCATTCACTCAACTGGAGAACAAACATTATCTAACACAAATCAACCATGAAGAAATTCCTCGTCCTTGCCC
TCATTGTTGTCGCGGCGACCACCACGGCCGCCGAACCCTTTACTGCATTCCGTACTGCTTGGGAGCCGCACCATCCATCA
TCTCCAGAGCAGCAACCAACTCCACAGCCACAAGAACAACCAGTTCCACATCAAAAGTTGAACCCATGCAGGGATGCCCT
CCTACAACAGTGTAGCCCAGTTGCTGATATGTCGTTCCTCCGGTCACAGGTGGTGCAACATAGCAGCTGCTTGGTAATGT
GGGAGCAGTGTTGTCAGCAACTAAAAGCGATCCCCAAGCAGTCAAGATGTGAGGCCATCCACAACGTCGTGCACGCCATC
GTTTTGCAACAGCAACAACAATTGGTACAAGGTATTTCCACCCAACCTCAGCAGCAACAACAACAAGGTCAACAACAACA
A---GGTCAGGGTTCTAGCCAGCCACAACAACAAACA---------CAACTGGATCAGGGTTGGATTGCGGTGATAGGGA
CATGGGTGATTCAGACCATTCCGGCAATGTGCGACGTGCATGTTCCACCATACTGCTACACCACCATATCACCATCCATT
GACGTCACTACCGGCATGGGCGGCTACTGAGAGG--------TCTAGTATCCGAAAAACGGACCAGCATTGTTTAGTCAA
TGGTCCGATCC--ATGTAGCGGTGAAAAATAAAGTGCCATGCATTATCATGTGTGGACTAGACTGGCACTAGTTCAAACT
TGGGAAATAAAAGGCAAACTAAGTTATTTTCTGCATATAGTGTTATTGGTCGGTGTTTCTATTCGGGCACACGTGGAGAT
GTTCATTCCTAACCACAATATTATGCATTAACTAGCTTTGTA--------------------------------------
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-------------------------------------------------------------TGTAGCAAAATAACCTTCG
--AAATAATCAAATGGTTGTAAAAGTCAGACTGAGCTAGATCCCTATTAAGGTAAGGAGTAAGGAACTAAGGACTAACCA
CAAACTAACTCTTTAATGGCGAGCCTTCTGAAATTTGACCTTCTTGAGATGATTCACAACTAGTTCTAAATAG-------
----------------------------------------------------------------------------TATA
TGGCATTGGTGTCAATGTGGTCCATTTAAGATTTTACTGCTGGTTTTGACTGTAGAGAGCGGGCAATTTGTCATTTCTGT
CCATATCCTGGAGGAAATTTTGCTCTCCAGAAAATGCATTAATTAATTAAGTTTGTGAAGAAAAAACTCAAACAGACAAA
GGAAGGAAGCCACTCTTTTTCCACTCTGATTGAGATGCCAATCTGATTGGTTGCTTCCTCCCTCCTCTTCCACAGAATAA
AGAAGCTAGTCTCGTTCTGCATATTATGGAAACCACAAGTTC-TTTCAGAAACAAAACTTTCTAGAGACCACTCCATTTT
CCCTGCTGTCCAGGCAGTACATACATAAGGGATAATTCACAACAAGGATGGAAAGCCATCCATAAATAAAGAAAAGGCCA
TCTTCTATCTCGCTCTAGAAGCATAGCTGTAGCTGGCTTGAGTACTCATCATCATCATTATCATCATCATCATCCCAAAG
AACTAGAAGAGAAGAAGAAGAAGATGCAG---GACTGGAGTCCGGTGCTCATCTCCTTCATGCTCTTCATCCTTATGTCC
CCAGGGCTTGTCTTTCAGATCCCTGGCAAATCGCGGACGATCGAGTGCGGCAAATTCCACACCAGTGTCGTCTCCATCCT
CATCCACACCATCATCTTCTT
>chr1B_282
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-----------------------------------------ACTAATACCTGCTAAATTGTACTATAATTTCCATCAAGA
ACTGCAAC-AAAATATGTGGACGCACATGCTTTGTAAATGCTCTCTATCGTTCTTAGCAATCCCTAGTTCCAACACTTGT
CATGAACA--CTTGAAAAAATTCAGCAAACAATACTTGATTATCTTAATGGTATGCAGAACAATACAGATTTAGTTCGAC
AAACTGACGCAATCTTGAACTAACCTTCATATGTACTTACATGTAAAGCCTTATACTAATCCTGTATGACATTACAATCC
TTGACATGTAAAGGGAATTTGACGAATCATGTCATCATCTACTTTTGCAAATTTTTTTTGCAGGAAGTCTACTTTTGCAA
GTTACAATACTAGTCTAATGTATCTTTACAGGCCACACAAGATTACAAACTA-AGTTCGGTGCAAGGCAAGCTAATCTAG
TTTATGCGTAACAACTTGTAGAACATAACAAACACAGTTTTAGAAAATGATGCAA-CCAGATCGATGTTTGTCATGTAAA
GTGAATAAGATGAGTCATGTGAATTATCAAGCTTTGCTGATAGCGGAATGATATATGCAACAACAAAGAACTTCGATGAC
CTGTCCAAGAATACACTTGTAAGTAGTTGCACCTAACGCAACCTACGAAATGTTAGTGACCGAGAAGCATCCATGCACTT
TTAAGAAAAG-AAATGCAAAGATGAAAAAAAAGGCGATGACA----TTATAAATAGGGCTTCACCATGAAGACCCTCCAT
CAC--CCCACCATTCACTCAACTTGAGAACAAACATTATCTAACACAAATCAACCATGAAGAAATTCCTCGTCCTTGCCC
TCATTGTCATCGCGGCGACCACCACGGCCGCCGAACCCTTTACTGCATTCCGTATTGCTTCGGAGCCGCAACATCCATCA
TCTCCAGAGCAGCAACCAACTCTGCAGCCACAAGAACATCCAGTTCCACATCAAAAGTTGAACCCTTGCAGGGATGCCCT
CCTACACCAGTGTAGCCCAGTAGCTGATATGTCGTTCCTCCGGTCACAAGTGGTGCAACATAGCAGCTGCTTGGTAATGT
GGGAGCAGTGTTGTCAGCAACTAAAAGCGATCCCCAAGCAGTCAAGATGTGAGGCCATCCACAACGTCGTGCACGCCATT
ATTTTGCAACAGCAAAAACAATTGGTACAAGGTACTTCAACCCAACCTCAGCAGCAGCAACAACAAGGTCAACAAGAACA
T---GGTCAGGGTTCTAGCCAGCCACAACACCAACAACAACAACAGCAACTGGATCAGGGTTGGATCGTGGCGATAGGGA
CATGGGTGATTCAGACCGTTCCGGCAATGTGCGACGTGCATGTTCCACCATACTGCTACACCACCATATCATCATCGAGT
GACGTCACTACCGGAATGGGCGGCTACTGAGAAGATGAGAGCTCTAGTATCCGAAAAATGGACCACCAATGTTTAGTCAA
TGGTCCGATCCATATGTAGCGGTGAAAAATAAAGTGCCATGCATTATCATGTGTGGACTAGACTGGCACTAGTTCAAACT
TGGGAA-TAAAAGGCAAACTAAGTTATTTTCTGCATATAGCGTTATCCGC--GTGTTTCCATTCGGGCACACGTGGATAT
GTTCATTCCTAACCACAATATTATGCATTAACTATCTTTGTACTCCCTCCGTTTTTACTTACTCCGCGTATTAGTTTTGA
CTCAAGTCAAACTTTATAAAGTTTGACCAAGTTTGTACAAAACAATATGAACATTTACAGTAATAATTTTATATGATGTG
GAAATATATGCAATGATGAATCCAATGATATATACTTGGTGGTGTATATGTTAATATATTTTTCTACAAAGTTCATGAAA
GTTTATAAAATTTGACTTTAGACAAACCAAATATGCGGAGTAAATAAAAACAGAGAGAGTATGTAGCAAAATAACCTTTA
AAAAATAACCAAATGGTTGTGAAAGTCGGACTGAGCTAGATCCCTATTAAGGTAAGGAGTAAGGA--------CTAACCA
CAAACCAACTCTTTAATGGTGATCCTTCTGAATTTTGACCTTCTTGAGATGATTCACAACTAGTTCTAAATAGCACTCTC
TCCGTAAAGAAATATAAGAGTGTTTAAATCACTACTTTAGTGATCTAAACACTCTTTTATTTCTTTACGGACGGAGTATA
TGGCATTGGTATCAATGTGGTCCATGTAAGATTTTACTGTTGGTTTAGACTTTAGAGAGCGGGCAATTTCTCATTTCTGT
CCATATCCTGGAGGAAAGTTTGCTGTCCAGAAAATGCGTTCATTAATTAAGTTTATGCAGACAAAACTCAAACAGAC---
---------------------------------------------ATTGGTTGTTTCCGCCCTCCTGTTCCACAGAATAA
AGAAGCTAGTCTCGTTCTGCATATTATGGAAACCACTAGTTTTTTTCAGAAACAGAACTTTCTACAGACCACACCATTTT
CCCTGCTGTCCTGGCAGTACATATATAAGTGATAATTCACAAAATGGATGGAAAGCCATCCATAAATAAAGAAAAGGCCA
T-----------------------------AGCTGGCTTGAGTAGTCATCATCATCATCATCCCAAAGAAGA--------
---------AGAGGAGGAAGAAGATGCAG---GACTGGGGTCTGGTGCTCATCTCCTTCATGCTCTTCATCCTTCTGTCC
CCAGGGCTTGTCATCCAGATCCCTGGCAAATCGTGGACGATCGAGTGCGGCAAGTTCCACACGAGCGTCGTCTCCATCCT
CATCCACACCATCATCTTCTT
>chr1D_382
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-----------------------------------------------------------------------AACACTAGT
CATGAACAATCCCGAACTTATTCAGCAAACAATACTTGATTATCTTAACGATTTGCACAACAGTACAGGTTTAATTCGAC
AAATAGATGGAATCTTGAACAAATCTTCGCCTGTACTTGAGTGTAAATCCTTATACTAATCCTGTACGACATTACAATCC
TTGGCATGTAAAGGGACTTTGACGAATCATGTCATC------------------------------ATCTACTTTTGCAA
GTTACAATACTAGTCTATTGTATCTTTACAGGCCACACAAAATTACAAACTTTAGTTCGGCACAAGGCAAGCTAATCTAG
TTTATGCGTAACAACTTGTAGAATATAACAAACCCAGTTTTAGAAAATGTTGCAATCCGGATCGATGTTTGACATGTAAA
GTAAGTAAGATGAGTTATGTCAATTATCAAGATTTGTTGATAGCGGAATGATACATGCAACAACAAAGAACTTTGATGAT
CAGTGCAGGAATATGCTTGTAAGTAGTTGCACCTAACGCAGCATACCAAATGATAGAGTCCGAGAAGCATCCATGCACTT
TTAAGGAAAGGAAATGCAAAGATGAAAAAAGGCGATGCCATGTCGGTTATAAATAGGCCTAAACAATCAAGACACTCCTC
CAGCACCCACCATTCACTCAACTGGAGAACAAACATTATCTAACACAAATCAACCATGAAGAAATTCCTCGTCCTTGCCC
TCATTGTTGTCGCGGCGACCACCACGGCCGCCGAACCCTTTACTGCATTCCGTAGTGCTTGGGAGCCGCAACATCCATCA
TCTCCGGAGCATCAACCAACTCCGCAGCCACAAGAACATCCAGTTCCACATCAAAAGTTGAACCCATGCAGGGATGCCCT
CCTACAACAGTGTAGCCCAGTTGCTGATATGTCATTCCTCCGGTCACAGGTGGTGCAACATAGCAGCTGCTTGGTAATGT
GGGAGCAGTGCTGTCAGCAACTAAAAGCGATCCCCAAGCAGTCAAGATGCGAGGCCATCCACAACGTCGTGCACGCCATT
ATTTTGCAACAACAACAACAATTGGTACAAGCTACTTCCACCCAACCTCAGCAGCAGCAACAACAAGGTCAACAACAACA
ACAGGGTCTGGGTTCTAGCCAGCCACAACAACAAACA---------CAACTGGATCAGGGTTGGATTGCGGTGATAGGGA
CATGGGTGATTCAGACCATCCCGGCAATGTGCGACGTGCATGTTCCACCATACTGCTACACCACCATATCACCATCCAGT
GACGTCACTACCGACATGGGCGGCTACTGAGAAGACGAGAGTTCTAGTATCCGAAAAATGGACCACCAATGTTTAGTCAA
TGGTCCGATCC--ATGTAGCGGTGAAAAATAAAGTGCCATGCATTATCATGTGTGGACTAGACTGGCACTAGTTCAAACT
TGGGAA-TAAAAGGCAAACTAAGTTATTTTCTGCATATAGCGTTATCCGTCGGTGTTTCCATTCGGGCACACGTGGAGAT
GTTCATTCCTAACCACAATATTATGCATTAACTAGCTTTGTA--------------------------------------
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-------------------------------------------------------------TGTAGCAAAATAACCTTAA
AAAAATAACCAAATGGTTGTGGAAGTCAGACTGAGCTAGATCCCTATTAAGGTAAGGAGTAAGGT--------CTAACCG
CAAACCTACACTTTAATGGTGAGCTTTCTGAATTTTGACCTTCTTGAGATGATTCACAACTAGTTCTAAATAGTACTCCC
TCTATAAAGAAATATAGGAGTGTACTTCTAAATAGTAC---------------------TTTCTTTACGGAGGGAGTATA
TGGCATTGGTATCAGTATGGTCCATGTAAGATTTTACTGTTGGTTTAGACTTTAGAGAGCGGGCAATTTCTCATTTCTGT
CCATATCCTGGAGGAAATTTTGCTGTCCAGAAAATGCGTTCATTAATTAAGTTTGTGCAGAAAAAACTCAAACAGACAAA
GGAAGCAAGCCACTCT----------------------------GATTGGTTGCTTCCGCCCTCCTCTTTCACAGAATAA
AGAAGCTAGTCTCGTTTTGCATCTTATGGAAACCACAAGTTC-TTTCAGAAACAAAACTTTCTAGAGACCACTCCATTTG
CCCTGCTGTCCTGGCAGTACATATATAAGTGATAATCCACACAAAGAATGGAAAGCCATCCATAAATAAAGAAAAGGCCA
TCTTCTATCTACCTCTAGAAGCATAGCTGTAGCTGGCTTGAGTAGCCATCATCATCATCATCCCAAAGAAGA--------
---------AGAGGAGGAAGAAGAAGATGCAAGACTGGGGTCCGGTGCTCATCTCCTTCATGCTCTTCATCCTTCTATCC
CCGGGGCTCCTCTTCCAGATCCCCGGCAAATCACGGACGATCGAGTGCGGCAAATTCCACACGAGCGTAGTCTCCATCCT
CATCCACACCATCATCTTCT-
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S------------------------S------
-S-----SS----S--------------------S---------S----------------S------S-----------
--------------------------------------------------------------S------S------S---
-------------------S----------------S------------------------------S------------
--------------S-S-SSSSSS---S----------------------------------------------------
-----S----------S----------S-----------------------------S--------S-------------
------S----------------------------------------------------------S--------------
-------------------------------------------S------------------------------------
---------S-------------S--------------------------------------------------------
--------------------------------S-----------S-----------------------------------
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------------------------------------------------------S---------------S---------
-----------------------S--------------S-----------------------------------------
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-------------------------------------------------------------------------------S
S---------------------------------S---------------------S-----------------------
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------------------------------------------------------------------------------S-
--------------------------------S-------------------------S------S--S-----------
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------S---------------------------------S-----SS-----------S--------------------
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------------------------------------------------------------------------------SS
--------S-----------S--------------------------------------------SSSSSSSS-------
-----S-------------S------------S-----------------------------------------------
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----------S--------------S-------------S------S----S-----------------S----------
------------------------S------------S--S----------------S----------------------
-----S----------SSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------S---------------------
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-----------S-----------S-----S------------S-------------------------------------
----------SS--------------------------------S-------------S---SSS-SS-SS-SSSSSSSS
SSSSSSSSS---S--S----------------------S-----------------------------------S-----
--------------S-----------------------------------------------S--S--------------
---------------------
>forward_84
----------------------------------------------------------------GTTGTGCCCAGCAAGT
CAAG----------------------------------------------------------------------------
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>reverse_1475
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----------------------------------TTTCCACCCAACCTCAGCAG--------------------------
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>forward_126
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--------------------------GGCCTATGCACCTGCCTATT----------------------------------
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>reverse_1679
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------------------------------------------------------------------------------TT
GACGTCACTACCGGCATG--------------------------------------------------------------
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>forward_1224
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----CAGAGCAGCAACCAACTCCA--------------------------------------------------------
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>reverse_3055
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--------------TCAGATCCCTGGCAAATCGC----------------------------------------------
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