Multiple sequence alignment - TraesCS1A01G005500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G005500 chr1A 100.000 3386 0 0 1 3386 3122436 3119051 0.000000e+00 6253.0
1 TraesCS1A01G005500 chr1D 93.041 1049 28 15 2377 3386 512617 511575 0.000000e+00 1491.0
2 TraesCS1A01G005500 chr1D 88.797 1089 61 28 1335 2385 513713 512648 0.000000e+00 1279.0
3 TraesCS1A01G005500 chr1D 88.133 750 35 22 591 1313 514507 513785 0.000000e+00 843.0
4 TraesCS1A01G005500 chr1D 82.155 297 26 10 2833 3127 455093130 455092859 2.630000e-56 230.0
5 TraesCS1A01G005500 chr1B 89.810 1050 54 26 2377 3386 4222811 4221775 0.000000e+00 1297.0
6 TraesCS1A01G005500 chr1B 93.570 591 24 5 1807 2385 4223430 4222842 0.000000e+00 869.0
7 TraesCS1A01G005500 chr1B 83.379 728 50 28 625 1335 4224825 4224152 2.890000e-170 608.0
8 TraesCS1A01G005500 chr1B 85.761 309 31 9 1334 1640 4223988 4223691 7.050000e-82 315.0
9 TraesCS1A01G005500 chr1B 88.462 260 19 9 1572 1822 4223724 4223467 1.530000e-78 303.0
10 TraesCS1A01G005500 chr1B 100.000 33 0 0 1334 1366 4224116 4224084 1.010000e-05 62.1
11 TraesCS1A01G005500 chr4D 92.157 51 2 2 3305 3355 122011603 122011651 1.690000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G005500 chr1A 3119051 3122436 3385 True 6253.000000 6253 100.000000 1 3386 1 chr1A.!!$R1 3385
1 TraesCS1A01G005500 chr1D 511575 514507 2932 True 1204.333333 1491 89.990333 591 3386 3 chr1D.!!$R2 2795
2 TraesCS1A01G005500 chr1B 4221775 4224825 3050 True 575.683333 1297 90.163667 625 3386 6 chr1B.!!$R1 2761

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
466 467 0.034186 TCCATGCCGCTCTTGGATTT 60.034 50.0 6.27 0.0 42.21 2.17 F
571 572 0.168128 GCGTGGATTTTTCCTGTCGG 59.832 55.0 0.00 0.0 0.00 4.79 F
575 576 0.323451 GGATTTTTCCTGTCGGCCCT 60.323 55.0 0.00 0.0 0.00 5.19 F
577 578 0.323451 ATTTTTCCTGTCGGCCCTCC 60.323 55.0 0.00 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1370 1463 0.898320 ATGCAACCTCGTAGCTGACT 59.102 50.000 0.0 0.0 0.00 3.41 R
1856 2174 1.078426 CCCCTGCCTACTTTGTCGG 60.078 63.158 0.0 0.0 0.00 4.79 R
2352 2686 2.184533 TCAATCCTCACTTTCGGGCTA 58.815 47.619 0.0 0.0 0.00 3.93 R
2543 2918 5.010112 TGAGGACTCAACTCAACTCAACTAG 59.990 44.000 0.0 0.0 41.66 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.725641 TGTACAGGATTGCTTGCTCG 58.274 50.000 0.00 0.00 0.00 5.03
21 22 1.001974 TGTACAGGATTGCTTGCTCGT 59.998 47.619 0.00 0.00 0.00 4.18
22 23 2.232696 TGTACAGGATTGCTTGCTCGTA 59.767 45.455 0.00 0.00 0.00 3.43
23 24 2.698855 ACAGGATTGCTTGCTCGTAT 57.301 45.000 0.00 0.00 0.00 3.06
24 25 2.991250 ACAGGATTGCTTGCTCGTATT 58.009 42.857 0.00 0.00 0.00 1.89
25 26 4.137116 ACAGGATTGCTTGCTCGTATTA 57.863 40.909 0.00 0.00 0.00 0.98
26 27 4.513442 ACAGGATTGCTTGCTCGTATTAA 58.487 39.130 0.00 0.00 0.00 1.40
27 28 4.332819 ACAGGATTGCTTGCTCGTATTAAC 59.667 41.667 0.00 0.00 0.00 2.01
28 29 3.877508 AGGATTGCTTGCTCGTATTAACC 59.122 43.478 0.00 0.00 0.00 2.85
29 30 3.303132 GGATTGCTTGCTCGTATTAACCG 60.303 47.826 0.00 0.00 0.00 4.44
30 31 1.003851 TGCTTGCTCGTATTAACCGC 58.996 50.000 0.00 0.00 0.00 5.68
31 32 0.043310 GCTTGCTCGTATTAACCGCG 60.043 55.000 0.00 0.00 0.00 6.46
32 33 1.274596 CTTGCTCGTATTAACCGCGT 58.725 50.000 4.92 0.00 0.00 6.01
33 34 2.453080 CTTGCTCGTATTAACCGCGTA 58.547 47.619 4.92 0.00 0.00 4.42
34 35 2.780065 TGCTCGTATTAACCGCGTAT 57.220 45.000 4.92 0.00 0.00 3.06
35 36 3.894782 TGCTCGTATTAACCGCGTATA 57.105 42.857 4.92 0.00 0.00 1.47
36 37 3.554524 TGCTCGTATTAACCGCGTATAC 58.445 45.455 4.92 6.60 0.00 1.47
37 38 3.250762 TGCTCGTATTAACCGCGTATACT 59.749 43.478 4.92 0.00 0.00 2.12
38 39 4.222114 GCTCGTATTAACCGCGTATACTT 58.778 43.478 4.92 0.00 0.00 2.24
39 40 4.676924 GCTCGTATTAACCGCGTATACTTT 59.323 41.667 4.92 0.00 0.00 2.66
40 41 5.386729 GCTCGTATTAACCGCGTATACTTTG 60.387 44.000 4.92 0.00 0.00 2.77
41 42 4.975502 TCGTATTAACCGCGTATACTTTGG 59.024 41.667 4.92 2.60 0.00 3.28
42 43 4.148696 CGTATTAACCGCGTATACTTTGGG 59.851 45.833 4.92 0.00 0.00 4.12
43 44 1.938625 TAACCGCGTATACTTTGGGC 58.061 50.000 4.92 0.00 0.00 5.36
44 45 1.085501 AACCGCGTATACTTTGGGCG 61.086 55.000 4.92 13.16 45.85 6.13
45 46 3.315796 CGCGTATACTTTGGGCGG 58.684 61.111 12.50 0.00 42.86 6.13
46 47 2.241880 CGCGTATACTTTGGGCGGG 61.242 63.158 12.50 0.00 42.86 6.13
47 48 2.540228 GCGTATACTTTGGGCGGGC 61.540 63.158 0.56 0.00 0.00 6.13
48 49 2.241880 CGTATACTTTGGGCGGGCG 61.242 63.158 0.56 0.00 0.00 6.13
49 50 2.203098 TATACTTTGGGCGGGCGC 60.203 61.111 0.00 0.00 41.06 6.53
68 69 4.179599 GGGGAGGGGGAGGAGGAG 62.180 77.778 0.00 0.00 0.00 3.69
69 70 4.179599 GGGAGGGGGAGGAGGAGG 62.180 77.778 0.00 0.00 0.00 4.30
70 71 4.179599 GGAGGGGGAGGAGGAGGG 62.180 77.778 0.00 0.00 0.00 4.30
71 72 4.179599 GAGGGGGAGGAGGAGGGG 62.180 77.778 0.00 0.00 0.00 4.79
77 78 4.798682 GAGGAGGAGGGGGCGGAA 62.799 72.222 0.00 0.00 0.00 4.30
78 79 4.348495 AGGAGGAGGGGGCGGAAA 62.348 66.667 0.00 0.00 0.00 3.13
79 80 3.798511 GGAGGAGGGGGCGGAAAG 61.799 72.222 0.00 0.00 0.00 2.62
80 81 2.687566 GAGGAGGGGGCGGAAAGA 60.688 66.667 0.00 0.00 0.00 2.52
81 82 2.689034 AGGAGGGGGCGGAAAGAG 60.689 66.667 0.00 0.00 0.00 2.85
82 83 2.687566 GGAGGGGGCGGAAAGAGA 60.688 66.667 0.00 0.00 0.00 3.10
83 84 2.736826 GGAGGGGGCGGAAAGAGAG 61.737 68.421 0.00 0.00 0.00 3.20
84 85 1.686110 GAGGGGGCGGAAAGAGAGA 60.686 63.158 0.00 0.00 0.00 3.10
85 86 1.229529 AGGGGGCGGAAAGAGAGAA 60.230 57.895 0.00 0.00 0.00 2.87
86 87 0.840722 AGGGGGCGGAAAGAGAGAAA 60.841 55.000 0.00 0.00 0.00 2.52
87 88 0.677098 GGGGGCGGAAAGAGAGAAAC 60.677 60.000 0.00 0.00 0.00 2.78
88 89 0.677098 GGGGCGGAAAGAGAGAAACC 60.677 60.000 0.00 0.00 0.00 3.27
89 90 1.019805 GGGCGGAAAGAGAGAAACCG 61.020 60.000 0.00 0.00 45.26 4.44
91 92 3.210857 CGGAAAGAGAGAAACCGCA 57.789 52.632 0.00 0.00 37.32 5.69
92 93 1.071605 CGGAAAGAGAGAAACCGCAG 58.928 55.000 0.00 0.00 37.32 5.18
104 105 4.479993 CCGCAGGCAGGAAGAGGG 62.480 72.222 0.00 0.00 46.14 4.30
105 106 3.710722 CGCAGGCAGGAAGAGGGT 61.711 66.667 0.00 0.00 0.00 4.34
106 107 2.045536 GCAGGCAGGAAGAGGGTG 60.046 66.667 0.00 0.00 0.00 4.61
107 108 2.596851 GCAGGCAGGAAGAGGGTGA 61.597 63.158 0.00 0.00 0.00 4.02
108 109 1.298014 CAGGCAGGAAGAGGGTGAC 59.702 63.158 0.00 0.00 0.00 3.67
109 110 2.266055 GGCAGGAAGAGGGTGACG 59.734 66.667 0.00 0.00 0.00 4.35
110 111 2.584391 GGCAGGAAGAGGGTGACGT 61.584 63.158 0.00 0.00 0.00 4.34
111 112 1.374758 GCAGGAAGAGGGTGACGTG 60.375 63.158 0.00 0.00 0.00 4.49
112 113 2.050269 CAGGAAGAGGGTGACGTGT 58.950 57.895 0.00 0.00 0.00 4.49
113 114 0.038159 CAGGAAGAGGGTGACGTGTC 60.038 60.000 0.00 0.00 0.00 3.67
114 115 0.469331 AGGAAGAGGGTGACGTGTCA 60.469 55.000 0.00 0.00 37.24 3.58
115 116 0.608640 GGAAGAGGGTGACGTGTCAT 59.391 55.000 5.91 0.00 42.18 3.06
116 117 1.404315 GGAAGAGGGTGACGTGTCATC 60.404 57.143 5.91 5.27 42.18 2.92
120 121 2.654877 GGTGACGTGTCATCCGGT 59.345 61.111 5.91 0.00 42.18 5.28
121 122 1.736645 GGTGACGTGTCATCCGGTG 60.737 63.158 5.91 0.00 42.18 4.94
122 123 1.006571 GTGACGTGTCATCCGGTGT 60.007 57.895 5.91 0.00 42.18 4.16
123 124 0.241749 GTGACGTGTCATCCGGTGTA 59.758 55.000 5.91 0.00 42.18 2.90
124 125 0.524414 TGACGTGTCATCCGGTGTAG 59.476 55.000 0.00 0.00 34.14 2.74
125 126 0.179145 GACGTGTCATCCGGTGTAGG 60.179 60.000 0.00 2.54 0.00 3.18
126 127 1.518572 CGTGTCATCCGGTGTAGGC 60.519 63.158 0.00 0.00 0.00 3.93
127 128 1.153429 GTGTCATCCGGTGTAGGCC 60.153 63.158 0.00 0.00 0.00 5.19
134 135 2.414179 CGGTGTAGGCCGCGATAA 59.586 61.111 8.23 0.00 45.47 1.75
135 136 1.660575 CGGTGTAGGCCGCGATAAG 60.661 63.158 8.23 0.00 45.47 1.73
136 137 1.737816 GGTGTAGGCCGCGATAAGA 59.262 57.895 8.23 0.00 0.00 2.10
137 138 0.103572 GGTGTAGGCCGCGATAAGAA 59.896 55.000 8.23 0.00 0.00 2.52
138 139 1.488527 GTGTAGGCCGCGATAAGAAG 58.511 55.000 8.23 0.00 0.00 2.85
139 140 0.387929 TGTAGGCCGCGATAAGAAGG 59.612 55.000 8.23 0.00 0.00 3.46
140 141 0.319641 GTAGGCCGCGATAAGAAGGG 60.320 60.000 8.23 0.00 0.00 3.95
141 142 1.469335 TAGGCCGCGATAAGAAGGGG 61.469 60.000 8.23 0.00 42.55 4.79
143 144 2.280865 CCGCGATAAGAAGGGGCC 60.281 66.667 8.23 0.00 33.73 5.80
144 145 2.661866 CGCGATAAGAAGGGGCCG 60.662 66.667 0.00 0.00 0.00 6.13
145 146 2.973052 GCGATAAGAAGGGGCCGC 60.973 66.667 12.88 12.88 35.91 6.53
146 147 2.661866 CGATAAGAAGGGGCCGCG 60.662 66.667 15.00 0.00 0.00 6.46
147 148 2.280865 GATAAGAAGGGGCCGCGG 60.281 66.667 24.05 24.05 0.00 6.46
148 149 3.826926 GATAAGAAGGGGCCGCGGG 62.827 68.421 29.38 8.95 0.00 6.13
176 177 3.423154 GTCGCAAGGCCGGAACAG 61.423 66.667 5.05 0.00 34.37 3.16
185 186 4.020617 CCGGAACAGCCAGCCAGA 62.021 66.667 0.00 0.00 35.94 3.86
186 187 2.743928 CGGAACAGCCAGCCAGAC 60.744 66.667 0.00 0.00 35.94 3.51
187 188 2.360475 GGAACAGCCAGCCAGACC 60.360 66.667 0.00 0.00 36.34 3.85
188 189 2.360475 GAACAGCCAGCCAGACCC 60.360 66.667 0.00 0.00 0.00 4.46
189 190 3.927481 GAACAGCCAGCCAGACCCC 62.927 68.421 0.00 0.00 0.00 4.95
195 196 4.748798 CAGCCAGACCCCCTCCCT 62.749 72.222 0.00 0.00 0.00 4.20
196 197 4.423209 AGCCAGACCCCCTCCCTC 62.423 72.222 0.00 0.00 0.00 4.30
198 199 4.825679 CCAGACCCCCTCCCTCCC 62.826 77.778 0.00 0.00 0.00 4.30
199 200 3.700350 CAGACCCCCTCCCTCCCT 61.700 72.222 0.00 0.00 0.00 4.20
200 201 3.369388 AGACCCCCTCCCTCCCTC 61.369 72.222 0.00 0.00 0.00 4.30
201 202 4.500826 GACCCCCTCCCTCCCTCC 62.501 77.778 0.00 0.00 0.00 4.30
205 206 4.179599 CCCTCCCTCCCTCCCCTC 62.180 77.778 0.00 0.00 0.00 4.30
206 207 3.368501 CCTCCCTCCCTCCCCTCA 61.369 72.222 0.00 0.00 0.00 3.86
207 208 2.041405 CTCCCTCCCTCCCCTCAC 60.041 72.222 0.00 0.00 0.00 3.51
208 209 3.695825 TCCCTCCCTCCCCTCACC 61.696 72.222 0.00 0.00 0.00 4.02
209 210 4.825679 CCCTCCCTCCCCTCACCC 62.826 77.778 0.00 0.00 0.00 4.61
210 211 4.825679 CCTCCCTCCCCTCACCCC 62.826 77.778 0.00 0.00 0.00 4.95
211 212 4.825679 CTCCCTCCCCTCACCCCC 62.826 77.778 0.00 0.00 0.00 5.40
213 214 4.371231 CCCTCCCCTCACCCCCTT 62.371 72.222 0.00 0.00 0.00 3.95
214 215 2.692741 CCTCCCCTCACCCCCTTC 60.693 72.222 0.00 0.00 0.00 3.46
215 216 2.124996 CTCCCCTCACCCCCTTCA 59.875 66.667 0.00 0.00 0.00 3.02
216 217 2.204090 TCCCCTCACCCCCTTCAC 60.204 66.667 0.00 0.00 0.00 3.18
217 218 2.204151 CCCCTCACCCCCTTCACT 60.204 66.667 0.00 0.00 0.00 3.41
218 219 2.301738 CCCCTCACCCCCTTCACTC 61.302 68.421 0.00 0.00 0.00 3.51
219 220 2.301738 CCCTCACCCCCTTCACTCC 61.302 68.421 0.00 0.00 0.00 3.85
220 221 2.660064 CCTCACCCCCTTCACTCCG 61.660 68.421 0.00 0.00 0.00 4.63
221 222 3.316573 CTCACCCCCTTCACTCCGC 62.317 68.421 0.00 0.00 0.00 5.54
222 223 4.410400 CACCCCCTTCACTCCGCC 62.410 72.222 0.00 0.00 0.00 6.13
227 228 4.452733 CCTTCACTCCGCCCCGAC 62.453 72.222 0.00 0.00 0.00 4.79
228 229 4.452733 CTTCACTCCGCCCCGACC 62.453 72.222 0.00 0.00 0.00 4.79
241 242 3.622826 CGACCCGACCCACACCTT 61.623 66.667 0.00 0.00 0.00 3.50
242 243 2.032071 GACCCGACCCACACCTTG 59.968 66.667 0.00 0.00 0.00 3.61
243 244 3.546714 GACCCGACCCACACCTTGG 62.547 68.421 0.00 0.00 46.47 3.61
244 245 3.566210 CCCGACCCACACCTTGGT 61.566 66.667 0.00 0.00 45.25 3.67
245 246 2.218454 CCCGACCCACACCTTGGTA 61.218 63.158 0.00 0.00 45.25 3.25
246 247 1.756024 CCGACCCACACCTTGGTAA 59.244 57.895 0.00 0.00 45.25 2.85
247 248 0.326927 CCGACCCACACCTTGGTAAT 59.673 55.000 0.00 0.00 45.25 1.89
248 249 1.555992 CCGACCCACACCTTGGTAATA 59.444 52.381 0.00 0.00 45.25 0.98
249 250 2.624636 CGACCCACACCTTGGTAATAC 58.375 52.381 0.00 0.00 45.25 1.89
250 251 2.027929 CGACCCACACCTTGGTAATACA 60.028 50.000 0.00 0.00 45.25 2.29
251 252 3.370103 CGACCCACACCTTGGTAATACAT 60.370 47.826 0.00 0.00 45.25 2.29
252 253 3.945285 GACCCACACCTTGGTAATACATG 59.055 47.826 0.00 0.00 45.25 3.21
253 254 3.332485 ACCCACACCTTGGTAATACATGT 59.668 43.478 2.69 2.69 45.25 3.21
254 255 3.694072 CCCACACCTTGGTAATACATGTG 59.306 47.826 9.11 0.00 45.25 3.21
255 256 3.128589 CCACACCTTGGTAATACATGTGC 59.871 47.826 9.11 0.00 41.10 4.57
256 257 3.755905 CACACCTTGGTAATACATGTGCA 59.244 43.478 9.11 0.00 30.63 4.57
257 258 4.009675 ACACCTTGGTAATACATGTGCAG 58.990 43.478 9.11 0.00 30.85 4.41
258 259 3.016736 ACCTTGGTAATACATGTGCAGC 58.983 45.455 9.11 3.60 0.00 5.25
259 260 2.032054 CCTTGGTAATACATGTGCAGCG 59.968 50.000 9.11 0.00 0.00 5.18
260 261 1.662517 TGGTAATACATGTGCAGCGG 58.337 50.000 9.11 0.00 0.00 5.52
261 262 0.307760 GGTAATACATGTGCAGCGGC 59.692 55.000 9.11 0.31 41.68 6.53
262 263 0.042188 GTAATACATGTGCAGCGGCG 60.042 55.000 9.11 0.51 45.35 6.46
263 264 1.157257 TAATACATGTGCAGCGGCGG 61.157 55.000 9.11 0.00 45.35 6.13
281 282 4.559063 CAGGGCCATGGCGAGGAG 62.559 72.222 29.90 14.00 43.06 3.69
284 285 4.864334 GGCCATGGCGAGGAGGTG 62.864 72.222 29.90 0.00 43.06 4.00
286 287 3.790437 CCATGGCGAGGAGGTGCT 61.790 66.667 0.00 0.00 0.00 4.40
287 288 2.513204 CATGGCGAGGAGGTGCTG 60.513 66.667 0.00 0.00 0.00 4.41
288 289 4.479993 ATGGCGAGGAGGTGCTGC 62.480 66.667 0.00 0.00 0.00 5.25
292 293 4.079850 CGAGGAGGTGCTGCTGCT 62.080 66.667 17.00 0.00 40.48 4.24
293 294 2.436292 GAGGAGGTGCTGCTGCTG 60.436 66.667 17.00 0.77 40.48 4.41
294 295 4.719106 AGGAGGTGCTGCTGCTGC 62.719 66.667 22.51 22.51 40.48 5.25
295 296 4.719106 GGAGGTGCTGCTGCTGCT 62.719 66.667 27.67 11.62 40.48 4.24
296 297 3.432588 GAGGTGCTGCTGCTGCTG 61.433 66.667 27.67 16.73 40.48 4.41
308 309 2.268280 CTGCTGCTGCTGCTAGGT 59.732 61.111 27.67 0.00 40.48 3.08
309 310 1.519246 CTGCTGCTGCTGCTAGGTA 59.481 57.895 27.67 10.07 40.48 3.08
310 311 0.530211 CTGCTGCTGCTGCTAGGTAG 60.530 60.000 27.67 15.15 40.48 3.18
311 312 1.227497 GCTGCTGCTGCTAGGTAGG 60.227 63.158 22.10 0.32 40.48 3.18
312 313 1.965754 GCTGCTGCTGCTAGGTAGGT 61.966 60.000 22.10 0.00 40.48 3.08
313 314 1.403814 CTGCTGCTGCTAGGTAGGTA 58.596 55.000 17.00 0.00 40.48 3.08
314 315 1.339610 CTGCTGCTGCTAGGTAGGTAG 59.660 57.143 17.00 0.00 40.48 3.18
315 316 0.676736 GCTGCTGCTAGGTAGGTAGG 59.323 60.000 8.53 0.00 36.03 3.18
316 317 2.030045 GCTGCTGCTAGGTAGGTAGGT 61.030 57.143 8.53 0.00 36.03 3.08
317 318 2.752154 GCTGCTGCTAGGTAGGTAGGTA 60.752 54.545 8.53 0.00 36.03 3.08
318 319 3.150767 CTGCTGCTAGGTAGGTAGGTAG 58.849 54.545 0.00 0.00 0.00 3.18
319 320 2.158505 TGCTGCTAGGTAGGTAGGTAGG 60.159 54.545 0.00 0.00 0.00 3.18
320 321 2.158490 GCTGCTAGGTAGGTAGGTAGGT 60.158 54.545 0.00 0.00 0.00 3.08
321 322 3.073650 GCTGCTAGGTAGGTAGGTAGGTA 59.926 52.174 0.00 0.00 0.00 3.08
322 323 4.806964 GCTGCTAGGTAGGTAGGTAGGTAG 60.807 54.167 0.00 0.00 0.00 3.18
323 324 3.654806 TGCTAGGTAGGTAGGTAGGTAGG 59.345 52.174 0.00 0.00 0.00 3.18
324 325 3.655291 GCTAGGTAGGTAGGTAGGTAGGT 59.345 52.174 0.00 0.00 0.00 3.08
325 326 4.846940 GCTAGGTAGGTAGGTAGGTAGGTA 59.153 50.000 0.00 0.00 0.00 3.08
326 327 5.045942 GCTAGGTAGGTAGGTAGGTAGGTAG 60.046 52.000 0.00 0.00 0.00 3.18
327 328 4.246978 AGGTAGGTAGGTAGGTAGGTAGG 58.753 52.174 0.00 0.00 0.00 3.18
328 329 3.332187 GGTAGGTAGGTAGGTAGGTAGGG 59.668 56.522 0.00 0.00 0.00 3.53
329 330 3.172728 AGGTAGGTAGGTAGGTAGGGT 57.827 52.381 0.00 0.00 0.00 4.34
330 331 3.489258 AGGTAGGTAGGTAGGTAGGGTT 58.511 50.000 0.00 0.00 0.00 4.11
331 332 3.867243 AGGTAGGTAGGTAGGTAGGGTTT 59.133 47.826 0.00 0.00 0.00 3.27
332 333 4.078922 AGGTAGGTAGGTAGGTAGGGTTTC 60.079 50.000 0.00 0.00 0.00 2.78
333 334 4.078922 GGTAGGTAGGTAGGTAGGGTTTCT 60.079 50.000 0.00 0.00 0.00 2.52
334 335 4.706645 AGGTAGGTAGGTAGGGTTTCTT 57.293 45.455 0.00 0.00 0.00 2.52
335 336 5.033867 AGGTAGGTAGGTAGGGTTTCTTT 57.966 43.478 0.00 0.00 0.00 2.52
336 337 5.028802 AGGTAGGTAGGTAGGGTTTCTTTC 58.971 45.833 0.00 0.00 0.00 2.62
337 338 4.142071 GGTAGGTAGGTAGGGTTTCTTTCG 60.142 50.000 0.00 0.00 0.00 3.46
338 339 2.836372 AGGTAGGTAGGGTTTCTTTCGG 59.164 50.000 0.00 0.00 0.00 4.30
339 340 2.625737 GTAGGTAGGGTTTCTTTCGGC 58.374 52.381 0.00 0.00 0.00 5.54
340 341 0.327259 AGGTAGGGTTTCTTTCGGCC 59.673 55.000 0.00 0.00 0.00 6.13
341 342 0.327259 GGTAGGGTTTCTTTCGGCCT 59.673 55.000 0.00 0.00 0.00 5.19
342 343 1.450025 GTAGGGTTTCTTTCGGCCTG 58.550 55.000 0.00 0.00 0.00 4.85
343 344 0.326927 TAGGGTTTCTTTCGGCCTGG 59.673 55.000 0.00 0.00 0.00 4.45
344 345 1.074248 GGGTTTCTTTCGGCCTGGA 59.926 57.895 0.00 0.00 0.00 3.86
345 346 0.538746 GGGTTTCTTTCGGCCTGGAA 60.539 55.000 0.00 0.00 0.00 3.53
346 347 0.596577 GGTTTCTTTCGGCCTGGAAC 59.403 55.000 0.00 0.00 0.00 3.62
347 348 1.314730 GTTTCTTTCGGCCTGGAACA 58.685 50.000 0.00 0.00 0.00 3.18
348 349 1.679153 GTTTCTTTCGGCCTGGAACAA 59.321 47.619 0.00 0.00 38.70 2.83
349 350 1.604604 TTCTTTCGGCCTGGAACAAG 58.395 50.000 0.00 0.00 38.70 3.16
350 351 0.762418 TCTTTCGGCCTGGAACAAGA 59.238 50.000 0.00 0.00 38.70 3.02
351 352 1.142060 TCTTTCGGCCTGGAACAAGAA 59.858 47.619 0.00 0.00 38.70 2.52
352 353 1.537202 CTTTCGGCCTGGAACAAGAAG 59.463 52.381 0.00 0.00 38.70 2.85
353 354 0.762418 TTCGGCCTGGAACAAGAAGA 59.238 50.000 0.00 0.00 38.70 2.87
354 355 0.034896 TCGGCCTGGAACAAGAAGAC 59.965 55.000 0.00 0.00 38.70 3.01
355 356 0.955919 CGGCCTGGAACAAGAAGACC 60.956 60.000 0.00 0.00 38.70 3.85
356 357 0.955919 GGCCTGGAACAAGAAGACCG 60.956 60.000 0.00 0.00 38.70 4.79
357 358 0.250338 GCCTGGAACAAGAAGACCGT 60.250 55.000 0.00 0.00 38.70 4.83
358 359 1.001633 GCCTGGAACAAGAAGACCGTA 59.998 52.381 0.00 0.00 38.70 4.02
359 360 2.685100 CCTGGAACAAGAAGACCGTAC 58.315 52.381 0.00 0.00 38.70 3.67
360 361 2.325761 CTGGAACAAGAAGACCGTACG 58.674 52.381 8.69 8.69 38.70 3.67
361 362 1.955778 TGGAACAAGAAGACCGTACGA 59.044 47.619 18.76 0.00 31.92 3.43
362 363 2.287788 TGGAACAAGAAGACCGTACGAC 60.288 50.000 18.76 10.50 31.92 4.34
363 364 1.974680 GAACAAGAAGACCGTACGACG 59.025 52.381 18.76 3.00 42.11 5.12
364 365 0.386478 ACAAGAAGACCGTACGACGC 60.386 55.000 18.76 5.33 40.91 5.19
365 366 1.069378 CAAGAAGACCGTACGACGCC 61.069 60.000 18.76 7.70 40.91 5.68
366 367 2.518836 AAGAAGACCGTACGACGCCG 62.519 60.000 18.76 1.31 40.91 6.46
367 368 3.027170 GAAGACCGTACGACGCCGA 62.027 63.158 18.76 0.00 40.91 5.54
368 369 3.314388 AAGACCGTACGACGCCGAC 62.314 63.158 18.76 0.00 40.91 4.79
377 378 4.517703 GACGCCGACGACGAGGAG 62.518 72.222 11.37 14.79 43.93 3.69
379 380 3.796443 CGCCGACGACGAGGAGAA 61.796 66.667 9.28 0.00 43.93 2.87
380 381 2.100603 GCCGACGACGAGGAGAAG 59.899 66.667 9.28 0.00 42.66 2.85
381 382 2.792599 CCGACGACGAGGAGAAGG 59.207 66.667 9.28 0.00 42.66 3.46
382 383 1.744368 CCGACGACGAGGAGAAGGA 60.744 63.158 9.28 0.00 42.66 3.36
383 384 1.707239 CCGACGACGAGGAGAAGGAG 61.707 65.000 9.28 0.00 42.66 3.69
384 385 1.707239 CGACGACGAGGAGAAGGAGG 61.707 65.000 0.00 0.00 42.66 4.30
385 386 0.392729 GACGACGAGGAGAAGGAGGA 60.393 60.000 0.00 0.00 0.00 3.71
386 387 0.393267 ACGACGAGGAGAAGGAGGAG 60.393 60.000 0.00 0.00 0.00 3.69
387 388 1.720694 CGACGAGGAGAAGGAGGAGC 61.721 65.000 0.00 0.00 0.00 4.70
388 389 1.720694 GACGAGGAGAAGGAGGAGCG 61.721 65.000 0.00 0.00 0.00 5.03
389 390 1.751162 CGAGGAGAAGGAGGAGCGT 60.751 63.158 0.00 0.00 0.00 5.07
390 391 1.720694 CGAGGAGAAGGAGGAGCGTC 61.721 65.000 0.00 0.00 0.00 5.19
391 392 1.380650 AGGAGAAGGAGGAGCGTCC 60.381 63.158 1.07 1.07 36.58 4.79
392 393 1.682684 GGAGAAGGAGGAGCGTCCA 60.683 63.158 11.36 0.00 39.61 4.02
393 394 1.671901 GGAGAAGGAGGAGCGTCCAG 61.672 65.000 11.36 0.00 39.61 3.86
394 395 1.671901 GAGAAGGAGGAGCGTCCAGG 61.672 65.000 11.36 0.00 39.61 4.45
395 396 2.685380 AAGGAGGAGCGTCCAGGG 60.685 66.667 11.36 0.00 39.61 4.45
396 397 4.787280 AGGAGGAGCGTCCAGGGG 62.787 72.222 11.36 0.00 39.61 4.79
404 405 4.227134 CGTCCAGGGGCGGATCTG 62.227 72.222 4.01 0.00 37.41 2.90
405 406 4.554036 GTCCAGGGGCGGATCTGC 62.554 72.222 18.73 18.73 37.41 4.26
406 407 4.804420 TCCAGGGGCGGATCTGCT 62.804 66.667 25.27 3.53 34.52 4.24
407 408 2.844362 CCAGGGGCGGATCTGCTA 60.844 66.667 25.27 0.00 34.52 3.49
408 409 2.739784 CAGGGGCGGATCTGCTAG 59.260 66.667 25.27 9.62 34.52 3.42
409 410 3.237741 AGGGGCGGATCTGCTAGC 61.238 66.667 25.27 8.10 34.52 3.42
410 411 4.671569 GGGGCGGATCTGCTAGCG 62.672 72.222 25.27 4.44 34.52 4.26
413 414 4.292178 GCGGATCTGCTAGCGCCT 62.292 66.667 19.63 0.00 34.43 5.52
414 415 2.419198 CGGATCTGCTAGCGCCTT 59.581 61.111 10.77 0.00 34.43 4.35
415 416 1.663074 CGGATCTGCTAGCGCCTTC 60.663 63.158 10.77 4.34 34.43 3.46
416 417 1.301322 GGATCTGCTAGCGCCTTCC 60.301 63.158 10.77 9.86 34.43 3.46
417 418 1.301322 GATCTGCTAGCGCCTTCCC 60.301 63.158 10.77 0.00 34.43 3.97
418 419 3.157217 ATCTGCTAGCGCCTTCCCG 62.157 63.158 10.77 0.00 34.43 5.14
419 420 4.899239 CTGCTAGCGCCTTCCCGG 62.899 72.222 10.77 0.00 34.43 5.73
422 423 3.458163 CTAGCGCCTTCCCGGTGA 61.458 66.667 2.29 0.00 46.58 4.02
423 424 3.432051 CTAGCGCCTTCCCGGTGAG 62.432 68.421 2.29 0.00 46.58 3.51
429 430 4.821589 CTTCCCGGTGAGCGCCTC 62.822 72.222 2.29 1.22 0.00 4.70
433 434 4.200283 CCGGTGAGCGCCTCTCTC 62.200 72.222 2.29 0.00 42.38 3.20
434 435 3.137459 CGGTGAGCGCCTCTCTCT 61.137 66.667 2.29 0.00 42.38 3.10
435 436 2.493973 GGTGAGCGCCTCTCTCTG 59.506 66.667 2.29 0.00 42.38 3.35
436 437 2.049185 GGTGAGCGCCTCTCTCTGA 61.049 63.158 2.29 0.00 42.38 3.27
437 438 1.599606 GGTGAGCGCCTCTCTCTGAA 61.600 60.000 2.29 0.00 42.38 3.02
438 439 0.457681 GTGAGCGCCTCTCTCTGAAC 60.458 60.000 2.29 0.00 42.38 3.18
439 440 1.140804 GAGCGCCTCTCTCTGAACC 59.859 63.158 2.29 0.00 38.78 3.62
440 441 2.202676 GCGCCTCTCTCTGAACCG 60.203 66.667 0.00 0.00 0.00 4.44
441 442 2.492090 CGCCTCTCTCTGAACCGG 59.508 66.667 0.00 0.00 0.00 5.28
442 443 2.046864 CGCCTCTCTCTGAACCGGA 61.047 63.158 9.46 0.00 0.00 5.14
443 444 1.388065 CGCCTCTCTCTGAACCGGAT 61.388 60.000 9.46 0.00 0.00 4.18
444 445 0.387565 GCCTCTCTCTGAACCGGATC 59.612 60.000 9.46 6.62 0.00 3.36
445 446 2.026905 GCCTCTCTCTGAACCGGATCT 61.027 57.143 9.46 0.00 0.00 2.75
446 447 2.750135 GCCTCTCTCTGAACCGGATCTA 60.750 54.545 9.46 0.00 0.00 1.98
447 448 3.761897 CCTCTCTCTGAACCGGATCTAT 58.238 50.000 9.46 0.00 0.00 1.98
448 449 3.756434 CCTCTCTCTGAACCGGATCTATC 59.244 52.174 9.46 0.00 0.00 2.08
449 450 3.756434 CTCTCTCTGAACCGGATCTATCC 59.244 52.174 9.46 0.00 43.65 2.59
458 459 3.450028 GGATCTATCCATGCCGCTC 57.550 57.895 4.04 0.00 46.38 5.03
459 460 0.901124 GGATCTATCCATGCCGCTCT 59.099 55.000 4.04 0.00 46.38 4.09
460 461 1.277557 GGATCTATCCATGCCGCTCTT 59.722 52.381 4.04 0.00 46.38 2.85
461 462 2.344950 GATCTATCCATGCCGCTCTTG 58.655 52.381 0.00 0.00 0.00 3.02
462 463 0.394192 TCTATCCATGCCGCTCTTGG 59.606 55.000 0.00 0.00 40.38 3.61
464 465 3.323622 TCCATGCCGCTCTTGGAT 58.676 55.556 6.27 0.00 42.21 3.41
465 466 1.609239 TCCATGCCGCTCTTGGATT 59.391 52.632 6.27 0.00 42.21 3.01
466 467 0.034186 TCCATGCCGCTCTTGGATTT 60.034 50.000 6.27 0.00 42.21 2.17
467 468 0.819582 CCATGCCGCTCTTGGATTTT 59.180 50.000 2.47 0.00 41.25 1.82
468 469 1.202336 CCATGCCGCTCTTGGATTTTC 60.202 52.381 2.47 0.00 41.25 2.29
469 470 1.473677 CATGCCGCTCTTGGATTTTCA 59.526 47.619 0.00 0.00 0.00 2.69
470 471 1.614996 TGCCGCTCTTGGATTTTCAA 58.385 45.000 0.00 0.00 0.00 2.69
471 472 1.959985 TGCCGCTCTTGGATTTTCAAA 59.040 42.857 0.00 0.00 0.00 2.69
472 473 2.562298 TGCCGCTCTTGGATTTTCAAAT 59.438 40.909 0.00 0.00 0.00 2.32
473 474 3.006752 TGCCGCTCTTGGATTTTCAAATT 59.993 39.130 0.00 0.00 0.00 1.82
474 475 3.996363 GCCGCTCTTGGATTTTCAAATTT 59.004 39.130 0.00 0.00 0.00 1.82
475 476 4.091945 GCCGCTCTTGGATTTTCAAATTTC 59.908 41.667 0.00 0.00 0.00 2.17
476 477 5.229423 CCGCTCTTGGATTTTCAAATTTCA 58.771 37.500 0.00 0.00 0.00 2.69
477 478 5.346822 CCGCTCTTGGATTTTCAAATTTCAG 59.653 40.000 0.00 0.00 0.00 3.02
478 479 5.922544 CGCTCTTGGATTTTCAAATTTCAGT 59.077 36.000 0.00 0.00 0.00 3.41
479 480 6.129009 CGCTCTTGGATTTTCAAATTTCAGTG 60.129 38.462 0.00 0.00 0.00 3.66
480 481 6.703165 GCTCTTGGATTTTCAAATTTCAGTGT 59.297 34.615 0.00 0.00 0.00 3.55
481 482 7.225341 GCTCTTGGATTTTCAAATTTCAGTGTT 59.775 33.333 0.00 0.00 0.00 3.32
482 483 8.647143 TCTTGGATTTTCAAATTTCAGTGTTC 57.353 30.769 0.00 0.00 0.00 3.18
483 484 7.710475 TCTTGGATTTTCAAATTTCAGTGTTCC 59.290 33.333 0.00 0.00 0.00 3.62
484 485 6.287525 TGGATTTTCAAATTTCAGTGTTCCC 58.712 36.000 0.00 0.00 0.00 3.97
485 486 6.099557 TGGATTTTCAAATTTCAGTGTTCCCT 59.900 34.615 0.00 0.00 0.00 4.20
486 487 6.992123 GGATTTTCAAATTTCAGTGTTCCCTT 59.008 34.615 0.00 0.00 0.00 3.95
487 488 7.171508 GGATTTTCAAATTTCAGTGTTCCCTTC 59.828 37.037 0.00 0.00 0.00 3.46
488 489 6.790232 TTTCAAATTTCAGTGTTCCCTTCT 57.210 33.333 0.00 0.00 0.00 2.85
489 490 6.790232 TTCAAATTTCAGTGTTCCCTTCTT 57.210 33.333 0.00 0.00 0.00 2.52
490 491 6.391227 TCAAATTTCAGTGTTCCCTTCTTC 57.609 37.500 0.00 0.00 0.00 2.87
491 492 6.129179 TCAAATTTCAGTGTTCCCTTCTTCT 58.871 36.000 0.00 0.00 0.00 2.85
492 493 6.607198 TCAAATTTCAGTGTTCCCTTCTTCTT 59.393 34.615 0.00 0.00 0.00 2.52
493 494 6.641169 AATTTCAGTGTTCCCTTCTTCTTC 57.359 37.500 0.00 0.00 0.00 2.87
494 495 5.373812 TTTCAGTGTTCCCTTCTTCTTCT 57.626 39.130 0.00 0.00 0.00 2.85
495 496 4.608948 TCAGTGTTCCCTTCTTCTTCTC 57.391 45.455 0.00 0.00 0.00 2.87
496 497 4.227197 TCAGTGTTCCCTTCTTCTTCTCT 58.773 43.478 0.00 0.00 0.00 3.10
497 498 4.282195 TCAGTGTTCCCTTCTTCTTCTCTC 59.718 45.833 0.00 0.00 0.00 3.20
498 499 3.580895 AGTGTTCCCTTCTTCTTCTCTCC 59.419 47.826 0.00 0.00 0.00 3.71
499 500 3.325135 GTGTTCCCTTCTTCTTCTCTCCA 59.675 47.826 0.00 0.00 0.00 3.86
500 501 4.019771 GTGTTCCCTTCTTCTTCTCTCCAT 60.020 45.833 0.00 0.00 0.00 3.41
501 502 4.019860 TGTTCCCTTCTTCTTCTCTCCATG 60.020 45.833 0.00 0.00 0.00 3.66
502 503 2.503356 TCCCTTCTTCTTCTCTCCATGC 59.497 50.000 0.00 0.00 0.00 4.06
503 504 2.504996 CCCTTCTTCTTCTCTCCATGCT 59.495 50.000 0.00 0.00 0.00 3.79
504 505 3.432046 CCCTTCTTCTTCTCTCCATGCTC 60.432 52.174 0.00 0.00 0.00 4.26
505 506 3.432046 CCTTCTTCTTCTCTCCATGCTCC 60.432 52.174 0.00 0.00 0.00 4.70
506 507 3.113191 TCTTCTTCTCTCCATGCTCCT 57.887 47.619 0.00 0.00 0.00 3.69
507 508 3.448934 TCTTCTTCTCTCCATGCTCCTT 58.551 45.455 0.00 0.00 0.00 3.36
508 509 3.450457 TCTTCTTCTCTCCATGCTCCTTC 59.550 47.826 0.00 0.00 0.00 3.46
509 510 2.825223 TCTTCTCTCCATGCTCCTTCA 58.175 47.619 0.00 0.00 0.00 3.02
510 511 3.382278 TCTTCTCTCCATGCTCCTTCAT 58.618 45.455 0.00 0.00 0.00 2.57
511 512 3.134262 TCTTCTCTCCATGCTCCTTCATG 59.866 47.826 0.00 0.00 42.53 3.07
512 513 2.475155 TCTCTCCATGCTCCTTCATGT 58.525 47.619 0.00 0.00 41.60 3.21
513 514 2.433604 TCTCTCCATGCTCCTTCATGTC 59.566 50.000 0.00 0.00 41.60 3.06
514 515 1.487976 TCTCCATGCTCCTTCATGTCC 59.512 52.381 0.00 0.00 41.60 4.02
515 516 0.548031 TCCATGCTCCTTCATGTCCC 59.452 55.000 0.00 0.00 41.60 4.46
516 517 0.466922 CCATGCTCCTTCATGTCCCC 60.467 60.000 0.00 0.00 41.60 4.81
517 518 0.466922 CATGCTCCTTCATGTCCCCC 60.467 60.000 0.00 0.00 39.10 5.40
534 535 4.354943 CCTCCCACCCTCCCACCT 62.355 72.222 0.00 0.00 0.00 4.00
535 536 2.204151 CTCCCACCCTCCCACCTT 60.204 66.667 0.00 0.00 0.00 3.50
536 537 2.204090 TCCCACCCTCCCACCTTC 60.204 66.667 0.00 0.00 0.00 3.46
537 538 2.204151 CCCACCCTCCCACCTTCT 60.204 66.667 0.00 0.00 0.00 2.85
538 539 1.852626 CCCACCCTCCCACCTTCTT 60.853 63.158 0.00 0.00 0.00 2.52
539 540 1.685820 CCACCCTCCCACCTTCTTC 59.314 63.158 0.00 0.00 0.00 2.87
540 541 1.296715 CACCCTCCCACCTTCTTCG 59.703 63.158 0.00 0.00 0.00 3.79
541 542 1.157751 ACCCTCCCACCTTCTTCGA 59.842 57.895 0.00 0.00 0.00 3.71
542 543 0.252742 ACCCTCCCACCTTCTTCGAT 60.253 55.000 0.00 0.00 0.00 3.59
543 544 0.912486 CCCTCCCACCTTCTTCGATT 59.088 55.000 0.00 0.00 0.00 3.34
544 545 1.282157 CCCTCCCACCTTCTTCGATTT 59.718 52.381 0.00 0.00 0.00 2.17
545 546 2.633488 CCTCCCACCTTCTTCGATTTC 58.367 52.381 0.00 0.00 0.00 2.17
546 547 2.237392 CCTCCCACCTTCTTCGATTTCT 59.763 50.000 0.00 0.00 0.00 2.52
547 548 3.526534 CTCCCACCTTCTTCGATTTCTC 58.473 50.000 0.00 0.00 0.00 2.87
548 549 2.236395 TCCCACCTTCTTCGATTTCTCC 59.764 50.000 0.00 0.00 0.00 3.71
549 550 2.271800 CCACCTTCTTCGATTTCTCCG 58.728 52.381 0.00 0.00 0.00 4.63
550 551 1.661112 CACCTTCTTCGATTTCTCCGC 59.339 52.381 0.00 0.00 0.00 5.54
551 552 1.550976 ACCTTCTTCGATTTCTCCGCT 59.449 47.619 0.00 0.00 0.00 5.52
552 553 1.929836 CCTTCTTCGATTTCTCCGCTG 59.070 52.381 0.00 0.00 0.00 5.18
553 554 1.325943 CTTCTTCGATTTCTCCGCTGC 59.674 52.381 0.00 0.00 0.00 5.25
554 555 0.802222 TCTTCGATTTCTCCGCTGCG 60.802 55.000 16.34 16.34 0.00 5.18
555 556 1.078759 CTTCGATTTCTCCGCTGCGT 61.079 55.000 21.59 0.00 0.00 5.24
556 557 1.351430 TTCGATTTCTCCGCTGCGTG 61.351 55.000 21.59 13.15 0.00 5.34
557 558 2.802667 CGATTTCTCCGCTGCGTGG 61.803 63.158 21.59 12.73 33.99 4.94
558 559 1.447838 GATTTCTCCGCTGCGTGGA 60.448 57.895 21.59 14.84 40.17 4.02
559 560 0.811616 GATTTCTCCGCTGCGTGGAT 60.812 55.000 21.59 10.54 41.66 3.41
560 561 0.392998 ATTTCTCCGCTGCGTGGATT 60.393 50.000 21.59 6.49 41.66 3.01
561 562 0.605319 TTTCTCCGCTGCGTGGATTT 60.605 50.000 21.59 0.00 41.66 2.17
562 563 0.605319 TTCTCCGCTGCGTGGATTTT 60.605 50.000 21.59 0.00 41.66 1.82
563 564 0.605319 TCTCCGCTGCGTGGATTTTT 60.605 50.000 21.59 0.00 41.66 1.94
564 565 0.179189 CTCCGCTGCGTGGATTTTTC 60.179 55.000 21.59 0.00 41.66 2.29
565 566 1.154035 CCGCTGCGTGGATTTTTCC 60.154 57.895 21.59 0.00 34.74 3.13
566 567 1.586154 CCGCTGCGTGGATTTTTCCT 61.586 55.000 21.59 0.00 34.74 3.36
567 568 0.454957 CGCTGCGTGGATTTTTCCTG 60.455 55.000 14.93 0.00 0.00 3.86
568 569 0.598065 GCTGCGTGGATTTTTCCTGT 59.402 50.000 0.00 0.00 0.00 4.00
569 570 1.401539 GCTGCGTGGATTTTTCCTGTC 60.402 52.381 0.00 0.00 0.00 3.51
570 571 0.871722 TGCGTGGATTTTTCCTGTCG 59.128 50.000 0.00 0.00 0.00 4.35
571 572 0.168128 GCGTGGATTTTTCCTGTCGG 59.832 55.000 0.00 0.00 0.00 4.79
572 573 0.168128 CGTGGATTTTTCCTGTCGGC 59.832 55.000 0.00 0.00 0.00 5.54
573 574 0.526211 GTGGATTTTTCCTGTCGGCC 59.474 55.000 0.00 0.00 0.00 6.13
574 575 0.610785 TGGATTTTTCCTGTCGGCCC 60.611 55.000 0.00 0.00 0.00 5.80
575 576 0.323451 GGATTTTTCCTGTCGGCCCT 60.323 55.000 0.00 0.00 0.00 5.19
576 577 1.095600 GATTTTTCCTGTCGGCCCTC 58.904 55.000 0.00 0.00 0.00 4.30
577 578 0.323451 ATTTTTCCTGTCGGCCCTCC 60.323 55.000 0.00 0.00 0.00 4.30
578 579 1.710996 TTTTTCCTGTCGGCCCTCCA 61.711 55.000 0.00 0.00 0.00 3.86
579 580 1.497309 TTTTCCTGTCGGCCCTCCAT 61.497 55.000 0.00 0.00 0.00 3.41
580 581 1.497309 TTTCCTGTCGGCCCTCCATT 61.497 55.000 0.00 0.00 0.00 3.16
581 582 2.124570 CCTGTCGGCCCTCCATTG 60.125 66.667 0.00 0.00 0.00 2.82
582 583 2.671070 CTGTCGGCCCTCCATTGT 59.329 61.111 0.00 0.00 0.00 2.71
583 584 1.450312 CTGTCGGCCCTCCATTGTC 60.450 63.158 0.00 0.00 0.00 3.18
584 585 2.124695 GTCGGCCCTCCATTGTCC 60.125 66.667 0.00 0.00 0.00 4.02
585 586 2.285368 TCGGCCCTCCATTGTCCT 60.285 61.111 0.00 0.00 0.00 3.85
586 587 2.190578 CGGCCCTCCATTGTCCTC 59.809 66.667 0.00 0.00 0.00 3.71
587 588 2.190578 GGCCCTCCATTGTCCTCG 59.809 66.667 0.00 0.00 0.00 4.63
588 589 2.190578 GCCCTCCATTGTCCTCGG 59.809 66.667 0.00 0.00 0.00 4.63
589 590 2.190578 CCCTCCATTGTCCTCGGC 59.809 66.667 0.00 0.00 0.00 5.54
651 658 1.226542 GTTCCCCTCCCGGATTTCC 59.773 63.158 0.73 0.00 0.00 3.13
654 661 2.313427 CCCCTCCCGGATTTCCCAA 61.313 63.158 0.73 0.00 34.14 4.12
670 677 1.379527 CCAAGAATCCCACCTAACGC 58.620 55.000 0.00 0.00 0.00 4.84
671 678 1.065418 CCAAGAATCCCACCTAACGCT 60.065 52.381 0.00 0.00 0.00 5.07
672 679 2.618045 CCAAGAATCCCACCTAACGCTT 60.618 50.000 0.00 0.00 0.00 4.68
705 712 0.390866 AGCAGATCCGCTCACACTTG 60.391 55.000 0.00 0.00 37.91 3.16
709 716 3.119291 CAGATCCGCTCACACTTGTATC 58.881 50.000 0.00 0.00 0.00 2.24
710 717 2.101582 AGATCCGCTCACACTTGTATCC 59.898 50.000 0.00 0.00 0.00 2.59
714 721 2.811431 CCGCTCACACTTGTATCCAAAA 59.189 45.455 0.00 0.00 0.00 2.44
715 722 3.252215 CCGCTCACACTTGTATCCAAAAA 59.748 43.478 0.00 0.00 0.00 1.94
778 785 1.704628 TGTGCAAGATTTCCTCCTCCA 59.295 47.619 0.00 0.00 0.00 3.86
779 786 2.309755 TGTGCAAGATTTCCTCCTCCAT 59.690 45.455 0.00 0.00 0.00 3.41
780 787 2.686915 GTGCAAGATTTCCTCCTCCATG 59.313 50.000 0.00 0.00 0.00 3.66
781 788 2.309755 TGCAAGATTTCCTCCTCCATGT 59.690 45.455 0.00 0.00 0.00 3.21
785 792 4.363991 AGATTTCCTCCTCCATGTATGC 57.636 45.455 0.00 0.00 0.00 3.14
817 824 6.756542 ACCAAGAAAATAATTTTATCCGCAGC 59.243 34.615 0.00 0.00 31.94 5.25
878 894 2.730382 TCACCTGCGGATCAACTACTA 58.270 47.619 0.00 0.00 0.00 1.82
892 908 3.335786 ACTACTATTCTACACGCAGCG 57.664 47.619 14.82 14.82 0.00 5.18
893 909 2.044860 CTACTATTCTACACGCAGCGC 58.955 52.381 16.61 0.00 0.00 5.92
925 941 3.791245 TGCCAACAACAGACAAATTTCC 58.209 40.909 0.00 0.00 0.00 3.13
928 944 3.803778 CCAACAACAGACAAATTTCCTGC 59.196 43.478 13.99 0.00 0.00 4.85
935 951 3.250762 CAGACAAATTTCCTGCGTCTTGA 59.749 43.478 5.60 0.00 34.79 3.02
941 957 2.839486 TTCCTGCGTCTTGATCAACT 57.161 45.000 3.38 0.00 0.00 3.16
1330 1382 7.858382 GCATACATGTTGTTGTGTGTTTAGTTA 59.142 33.333 2.30 0.00 39.91 2.24
1368 1461 5.639082 TGCTGATTGATATGTGGTATTAGCG 59.361 40.000 0.00 0.00 0.00 4.26
1370 1463 6.811665 GCTGATTGATATGTGGTATTAGCGTA 59.188 38.462 0.00 0.00 0.00 4.42
1371 1464 7.009631 GCTGATTGATATGTGGTATTAGCGTAG 59.990 40.741 0.00 0.00 0.00 3.51
1375 1468 6.909909 TGATATGTGGTATTAGCGTAGTCAG 58.090 40.000 0.00 0.00 0.00 3.51
1438 1659 8.853126 TGTGTAATAAGGCGTACACTCTATTAT 58.147 33.333 18.05 0.00 46.70 1.28
1439 1660 9.688592 GTGTAATAAGGCGTACACTCTATTATT 57.311 33.333 13.15 0.00 44.35 1.40
1467 1688 1.382522 GCAGCAGCAAGTAGGCATAA 58.617 50.000 0.00 0.00 41.58 1.90
1485 1706 2.338577 AAGCATGCAAGGTAGCTAGG 57.661 50.000 21.98 0.00 36.07 3.02
1487 1708 2.053244 AGCATGCAAGGTAGCTAGGAT 58.947 47.619 21.98 0.00 35.19 3.24
1488 1709 2.441001 AGCATGCAAGGTAGCTAGGATT 59.559 45.455 21.98 0.00 35.19 3.01
1544 1765 5.278169 GGTGCTTATAACGGTCGAGAGATTA 60.278 44.000 0.00 0.00 45.19 1.75
1589 1810 3.108376 ACCTTACCAGAAGCTAGGAAGG 58.892 50.000 13.00 13.00 37.79 3.46
1617 1838 2.416547 AGCATGCACACGTTATCAGAAC 59.583 45.455 21.98 0.00 0.00 3.01
1618 1839 2.476185 GCATGCACACGTTATCAGAACC 60.476 50.000 14.21 0.00 0.00 3.62
1622 1883 2.412870 CACACGTTATCAGAACCTGCA 58.587 47.619 0.00 0.00 0.00 4.41
1627 1888 2.926200 CGTTATCAGAACCTGCAGACAG 59.074 50.000 17.39 0.15 44.05 3.51
1646 1907 1.779061 CAAAGCGTGCACGTACGAT 59.221 52.632 36.80 18.18 46.46 3.73
1679 1942 4.509616 GCAACAAAGTTGGTTTAGGGTTT 58.490 39.130 11.39 0.00 0.00 3.27
1728 1991 9.311916 CTCAATTGAACCAACAAAAATTAGTGA 57.688 29.630 9.88 0.00 33.44 3.41
1797 2097 6.712095 TCTTTCATGAGACAACACTAAATGCT 59.288 34.615 0.00 0.00 0.00 3.79
1925 2243 2.223021 CGGCACATTTCATAACCGTCTG 60.223 50.000 0.00 0.00 35.99 3.51
1958 2276 5.748592 ACAAAAGTTCAGTAGCGACAAATC 58.251 37.500 0.00 0.00 0.00 2.17
1964 2282 1.992667 CAGTAGCGACAAATCAAGCGA 59.007 47.619 0.00 0.00 34.34 4.93
2004 2331 0.802494 ATTTTTGCAGGACGCTACCG 59.198 50.000 0.00 0.00 43.06 4.02
2107 2439 6.288294 TCCTGTTTATCATATACAGCACCAC 58.712 40.000 9.22 0.00 36.71 4.16
2124 2456 6.877322 CAGCACCACATCATTGATATCTGATA 59.123 38.462 3.98 0.00 31.05 2.15
2126 2458 6.183360 GCACCACATCATTGATATCTGATACG 60.183 42.308 3.98 1.22 31.05 3.06
2352 2686 2.678934 TCTTGCGGGGCGAGTAGT 60.679 61.111 4.87 0.00 40.65 2.73
2370 2704 2.188817 AGTAGCCCGAAAGTGAGGATT 58.811 47.619 0.00 0.00 0.00 3.01
2442 2815 2.206515 TTAGCGCCATTTTGCACCCG 62.207 55.000 2.29 0.00 0.00 5.28
2543 2918 8.156994 AGTACCTATTCGAGTCAGAGTTTATC 57.843 38.462 0.00 0.00 0.00 1.75
2914 3326 8.743085 ACATTCAGCTGTCATCATATAGTTTT 57.257 30.769 14.67 0.00 0.00 2.43
2955 3367 2.683465 ATCAGCCGCCCTGGTTCAT 61.683 57.895 0.00 0.00 42.05 2.57
2956 3368 2.215451 ATCAGCCGCCCTGGTTCATT 62.215 55.000 0.00 0.00 42.05 2.57
3004 3420 0.394216 TGTGTGCACACTTCTTGGCT 60.394 50.000 40.79 0.00 46.55 4.75
3005 3421 0.308993 GTGTGCACACTTCTTGGCTC 59.691 55.000 36.77 11.53 43.25 4.70
3020 3436 4.092821 TCTTGGCTCGATGTAATTTTCACG 59.907 41.667 0.00 0.00 0.00 4.35
3026 3442 3.055675 TCGATGTAATTTTCACGGACCCT 60.056 43.478 0.00 0.00 0.00 4.34
3027 3443 3.687698 CGATGTAATTTTCACGGACCCTT 59.312 43.478 0.00 0.00 0.00 3.95
3028 3444 4.871557 CGATGTAATTTTCACGGACCCTTA 59.128 41.667 0.00 0.00 0.00 2.69
3056 3472 5.762179 AGATGAACTTGGTCCAATCTGTA 57.238 39.130 4.34 0.00 0.00 2.74
3134 3550 4.566545 TTGTAGCAAATGAGGTGTTGTG 57.433 40.909 0.00 0.00 0.00 3.33
3141 3557 0.105760 ATGAGGTGTTGTGGGCCAAA 60.106 50.000 8.40 0.00 34.07 3.28
3146 3562 1.270252 GGTGTTGTGGGCCAAAAGATG 60.270 52.381 10.07 0.00 34.07 2.90
3190 3607 3.290948 TTGTACTTTGTCTGGCCTTGT 57.709 42.857 3.32 0.00 0.00 3.16
3194 3611 3.577805 ACTTTGTCTGGCCTTGTTAGT 57.422 42.857 3.32 0.00 0.00 2.24
3198 3615 3.906720 TGTCTGGCCTTGTTAGTATCC 57.093 47.619 3.32 0.00 0.00 2.59
3255 3677 3.321682 TCAATTCTTGTTGCCCTTTGGAG 59.678 43.478 0.00 0.00 0.00 3.86
3256 3678 1.703411 TTCTTGTTGCCCTTTGGAGG 58.297 50.000 0.00 0.00 43.15 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.076100 CGAGCAAGCAATCCTGTACAA 58.924 47.619 0.00 0.00 0.00 2.41
1 2 1.001974 ACGAGCAAGCAATCCTGTACA 59.998 47.619 0.00 0.00 0.00 2.90
2 3 1.726853 ACGAGCAAGCAATCCTGTAC 58.273 50.000 0.00 0.00 0.00 2.90
3 4 3.819564 ATACGAGCAAGCAATCCTGTA 57.180 42.857 0.00 0.00 0.00 2.74
4 5 2.698855 ATACGAGCAAGCAATCCTGT 57.301 45.000 0.00 0.00 0.00 4.00
5 6 4.260784 GGTTAATACGAGCAAGCAATCCTG 60.261 45.833 0.00 0.00 0.00 3.86
6 7 3.877508 GGTTAATACGAGCAAGCAATCCT 59.122 43.478 0.00 0.00 0.00 3.24
7 8 3.303132 CGGTTAATACGAGCAAGCAATCC 60.303 47.826 0.00 0.00 0.00 3.01
8 9 3.844943 GCGGTTAATACGAGCAAGCAATC 60.845 47.826 6.69 0.00 0.00 2.67
9 10 2.031683 GCGGTTAATACGAGCAAGCAAT 59.968 45.455 6.69 0.00 0.00 3.56
10 11 1.395608 GCGGTTAATACGAGCAAGCAA 59.604 47.619 6.69 0.00 0.00 3.91
11 12 1.003851 GCGGTTAATACGAGCAAGCA 58.996 50.000 6.69 0.00 0.00 3.91
12 13 0.043310 CGCGGTTAATACGAGCAAGC 60.043 55.000 0.00 0.00 0.00 4.01
13 14 1.274596 ACGCGGTTAATACGAGCAAG 58.725 50.000 12.47 0.00 34.45 4.01
14 15 2.558265 TACGCGGTTAATACGAGCAA 57.442 45.000 12.47 0.00 34.45 3.91
15 16 2.780065 ATACGCGGTTAATACGAGCA 57.220 45.000 12.47 0.00 34.45 4.26
16 17 3.814945 AGTATACGCGGTTAATACGAGC 58.185 45.455 12.47 0.00 34.45 5.03
17 18 5.116074 CCAAAGTATACGCGGTTAATACGAG 59.884 44.000 12.47 5.85 37.17 4.18
18 19 4.975502 CCAAAGTATACGCGGTTAATACGA 59.024 41.667 12.47 0.00 32.52 3.43
19 20 4.148696 CCCAAAGTATACGCGGTTAATACG 59.851 45.833 12.47 1.20 32.52 3.06
20 21 4.084380 GCCCAAAGTATACGCGGTTAATAC 60.084 45.833 12.47 12.44 0.00 1.89
21 22 4.057432 GCCCAAAGTATACGCGGTTAATA 58.943 43.478 12.47 0.00 0.00 0.98
22 23 2.874086 GCCCAAAGTATACGCGGTTAAT 59.126 45.455 12.47 0.00 0.00 1.40
23 24 2.278854 GCCCAAAGTATACGCGGTTAA 58.721 47.619 12.47 0.00 0.00 2.01
24 25 1.802136 CGCCCAAAGTATACGCGGTTA 60.802 52.381 12.47 0.00 39.20 2.85
25 26 1.085501 CGCCCAAAGTATACGCGGTT 61.086 55.000 12.47 0.00 39.20 4.44
26 27 1.519898 CGCCCAAAGTATACGCGGT 60.520 57.895 12.47 0.22 39.20 5.68
27 28 3.315796 CGCCCAAAGTATACGCGG 58.684 61.111 12.47 7.51 39.20 6.46
28 29 2.241880 CCCGCCCAAAGTATACGCG 61.242 63.158 3.53 3.53 42.37 6.01
29 30 2.540228 GCCCGCCCAAAGTATACGC 61.540 63.158 0.00 0.00 0.00 4.42
30 31 2.241880 CGCCCGCCCAAAGTATACG 61.242 63.158 0.00 0.00 0.00 3.06
31 32 2.540228 GCGCCCGCCCAAAGTATAC 61.540 63.158 0.00 0.00 34.56 1.47
32 33 2.203098 GCGCCCGCCCAAAGTATA 60.203 61.111 0.00 0.00 34.56 1.47
51 52 4.179599 CTCCTCCTCCCCCTCCCC 62.180 77.778 0.00 0.00 0.00 4.81
52 53 4.179599 CCTCCTCCTCCCCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
53 54 4.179599 CCCTCCTCCTCCCCCTCC 62.180 77.778 0.00 0.00 0.00 4.30
54 55 4.179599 CCCCTCCTCCTCCCCCTC 62.180 77.778 0.00 0.00 0.00 4.30
60 61 4.798682 TTCCGCCCCCTCCTCCTC 62.799 72.222 0.00 0.00 0.00 3.71
61 62 4.348495 TTTCCGCCCCCTCCTCCT 62.348 66.667 0.00 0.00 0.00 3.69
62 63 3.798511 CTTTCCGCCCCCTCCTCC 61.799 72.222 0.00 0.00 0.00 4.30
63 64 2.687566 TCTTTCCGCCCCCTCCTC 60.688 66.667 0.00 0.00 0.00 3.71
64 65 2.689034 CTCTTTCCGCCCCCTCCT 60.689 66.667 0.00 0.00 0.00 3.69
65 66 2.687566 TCTCTTTCCGCCCCCTCC 60.688 66.667 0.00 0.00 0.00 4.30
66 67 1.265454 TTCTCTCTTTCCGCCCCCTC 61.265 60.000 0.00 0.00 0.00 4.30
67 68 0.840722 TTTCTCTCTTTCCGCCCCCT 60.841 55.000 0.00 0.00 0.00 4.79
68 69 0.677098 GTTTCTCTCTTTCCGCCCCC 60.677 60.000 0.00 0.00 0.00 5.40
69 70 0.677098 GGTTTCTCTCTTTCCGCCCC 60.677 60.000 0.00 0.00 0.00 5.80
70 71 1.019805 CGGTTTCTCTCTTTCCGCCC 61.020 60.000 0.00 0.00 35.01 6.13
71 72 2.457080 CGGTTTCTCTCTTTCCGCC 58.543 57.895 0.00 0.00 35.01 6.13
73 74 1.071605 CTGCGGTTTCTCTCTTTCCG 58.928 55.000 0.00 0.00 43.37 4.30
74 75 1.443802 CCTGCGGTTTCTCTCTTTCC 58.556 55.000 0.00 0.00 0.00 3.13
75 76 0.799393 GCCTGCGGTTTCTCTCTTTC 59.201 55.000 0.00 0.00 0.00 2.62
76 77 0.108585 TGCCTGCGGTTTCTCTCTTT 59.891 50.000 0.00 0.00 0.00 2.52
77 78 0.321122 CTGCCTGCGGTTTCTCTCTT 60.321 55.000 0.00 0.00 0.00 2.85
78 79 1.294780 CTGCCTGCGGTTTCTCTCT 59.705 57.895 0.00 0.00 0.00 3.10
79 80 1.743252 CCTGCCTGCGGTTTCTCTC 60.743 63.158 0.00 0.00 0.00 3.20
80 81 1.768684 TTCCTGCCTGCGGTTTCTCT 61.769 55.000 0.00 0.00 0.00 3.10
81 82 1.301677 CTTCCTGCCTGCGGTTTCTC 61.302 60.000 0.00 0.00 0.00 2.87
82 83 1.302832 CTTCCTGCCTGCGGTTTCT 60.303 57.895 0.00 0.00 0.00 2.52
83 84 1.301677 CTCTTCCTGCCTGCGGTTTC 61.302 60.000 0.00 0.00 0.00 2.78
84 85 1.302832 CTCTTCCTGCCTGCGGTTT 60.303 57.895 0.00 0.00 0.00 3.27
85 86 2.348998 CTCTTCCTGCCTGCGGTT 59.651 61.111 0.00 0.00 0.00 4.44
86 87 3.710722 CCTCTTCCTGCCTGCGGT 61.711 66.667 0.00 0.00 0.00 5.68
87 88 4.479993 CCCTCTTCCTGCCTGCGG 62.480 72.222 0.00 0.00 0.00 5.69
88 89 3.710722 ACCCTCTTCCTGCCTGCG 61.711 66.667 0.00 0.00 0.00 5.18
89 90 2.045536 CACCCTCTTCCTGCCTGC 60.046 66.667 0.00 0.00 0.00 4.85
90 91 1.298014 GTCACCCTCTTCCTGCCTG 59.702 63.158 0.00 0.00 0.00 4.85
91 92 2.286523 CGTCACCCTCTTCCTGCCT 61.287 63.158 0.00 0.00 0.00 4.75
92 93 2.266055 CGTCACCCTCTTCCTGCC 59.734 66.667 0.00 0.00 0.00 4.85
93 94 1.374758 CACGTCACCCTCTTCCTGC 60.375 63.158 0.00 0.00 0.00 4.85
94 95 0.038159 GACACGTCACCCTCTTCCTG 60.038 60.000 0.00 0.00 0.00 3.86
95 96 0.469331 TGACACGTCACCCTCTTCCT 60.469 55.000 0.00 0.00 34.14 3.36
96 97 0.608640 ATGACACGTCACCCTCTTCC 59.391 55.000 1.15 0.00 43.11 3.46
97 98 1.404315 GGATGACACGTCACCCTCTTC 60.404 57.143 3.08 0.00 40.27 2.87
98 99 0.608640 GGATGACACGTCACCCTCTT 59.391 55.000 3.08 0.00 40.27 2.85
99 100 1.595993 CGGATGACACGTCACCCTCT 61.596 60.000 8.94 0.00 41.30 3.69
100 101 1.153823 CGGATGACACGTCACCCTC 60.154 63.158 8.94 0.35 41.30 4.30
101 102 2.646175 CCGGATGACACGTCACCCT 61.646 63.158 8.94 0.00 41.30 4.34
102 103 2.125673 CCGGATGACACGTCACCC 60.126 66.667 0.00 0.00 43.11 4.61
103 104 1.736645 CACCGGATGACACGTCACC 60.737 63.158 9.46 5.53 43.11 4.02
104 105 0.241749 TACACCGGATGACACGTCAC 59.758 55.000 9.46 0.00 43.11 3.67
105 106 0.524414 CTACACCGGATGACACGTCA 59.476 55.000 9.46 1.71 44.59 4.35
106 107 0.179145 CCTACACCGGATGACACGTC 60.179 60.000 9.46 0.00 0.00 4.34
107 108 1.888018 CCTACACCGGATGACACGT 59.112 57.895 9.46 0.00 0.00 4.49
108 109 1.518572 GCCTACACCGGATGACACG 60.519 63.158 9.46 0.00 0.00 4.49
109 110 1.153429 GGCCTACACCGGATGACAC 60.153 63.158 9.46 0.00 0.00 3.67
110 111 3.305314 GGCCTACACCGGATGACA 58.695 61.111 9.46 0.00 0.00 3.58
118 119 0.103572 TTCTTATCGCGGCCTACACC 59.896 55.000 6.13 0.00 0.00 4.16
119 120 1.488527 CTTCTTATCGCGGCCTACAC 58.511 55.000 6.13 0.00 0.00 2.90
120 121 0.387929 CCTTCTTATCGCGGCCTACA 59.612 55.000 6.13 0.00 0.00 2.74
121 122 0.319641 CCCTTCTTATCGCGGCCTAC 60.320 60.000 6.13 0.00 0.00 3.18
122 123 1.469335 CCCCTTCTTATCGCGGCCTA 61.469 60.000 6.13 0.00 0.00 3.93
123 124 2.808206 CCCCTTCTTATCGCGGCCT 61.808 63.158 6.13 0.00 0.00 5.19
124 125 2.280865 CCCCTTCTTATCGCGGCC 60.281 66.667 6.13 0.00 0.00 6.13
125 126 2.973052 GCCCCTTCTTATCGCGGC 60.973 66.667 6.13 0.00 0.00 6.53
126 127 2.280865 GGCCCCTTCTTATCGCGG 60.281 66.667 6.13 0.00 0.00 6.46
127 128 2.661866 CGGCCCCTTCTTATCGCG 60.662 66.667 0.00 0.00 0.00 5.87
128 129 2.973052 GCGGCCCCTTCTTATCGC 60.973 66.667 0.00 0.00 36.51 4.58
129 130 2.661866 CGCGGCCCCTTCTTATCG 60.662 66.667 0.00 0.00 0.00 2.92
130 131 2.280865 CCGCGGCCCCTTCTTATC 60.281 66.667 14.67 0.00 0.00 1.75
131 132 3.873812 CCCGCGGCCCCTTCTTAT 61.874 66.667 22.85 0.00 0.00 1.73
159 160 3.423154 CTGTTCCGGCCTTGCGAC 61.423 66.667 0.00 0.00 0.00 5.19
168 169 4.020617 TCTGGCTGGCTGTTCCGG 62.021 66.667 0.00 0.00 44.43 5.14
169 170 2.743928 GTCTGGCTGGCTGTTCCG 60.744 66.667 2.00 0.00 37.80 4.30
170 171 2.360475 GGTCTGGCTGGCTGTTCC 60.360 66.667 2.00 6.13 0.00 3.62
171 172 2.360475 GGGTCTGGCTGGCTGTTC 60.360 66.667 2.00 0.85 0.00 3.18
172 173 3.971702 GGGGTCTGGCTGGCTGTT 61.972 66.667 2.00 0.00 0.00 3.16
178 179 4.748798 AGGGAGGGGGTCTGGCTG 62.749 72.222 0.00 0.00 0.00 4.85
179 180 4.423209 GAGGGAGGGGGTCTGGCT 62.423 72.222 0.00 0.00 0.00 4.75
181 182 4.825679 GGGAGGGAGGGGGTCTGG 62.826 77.778 0.00 0.00 0.00 3.86
182 183 3.700350 AGGGAGGGAGGGGGTCTG 61.700 72.222 0.00 0.00 0.00 3.51
183 184 3.369388 GAGGGAGGGAGGGGGTCT 61.369 72.222 0.00 0.00 0.00 3.85
184 185 4.500826 GGAGGGAGGGAGGGGGTC 62.501 77.778 0.00 0.00 0.00 4.46
188 189 4.179599 GAGGGGAGGGAGGGAGGG 62.180 77.778 0.00 0.00 0.00 4.30
189 190 3.368501 TGAGGGGAGGGAGGGAGG 61.369 72.222 0.00 0.00 0.00 4.30
190 191 2.041405 GTGAGGGGAGGGAGGGAG 60.041 72.222 0.00 0.00 0.00 4.30
191 192 3.695825 GGTGAGGGGAGGGAGGGA 61.696 72.222 0.00 0.00 0.00 4.20
192 193 4.825679 GGGTGAGGGGAGGGAGGG 62.826 77.778 0.00 0.00 0.00 4.30
193 194 4.825679 GGGGTGAGGGGAGGGAGG 62.826 77.778 0.00 0.00 0.00 4.30
194 195 4.825679 GGGGGTGAGGGGAGGGAG 62.826 77.778 0.00 0.00 0.00 4.30
196 197 4.371231 AAGGGGGTGAGGGGAGGG 62.371 72.222 0.00 0.00 0.00 4.30
197 198 2.692741 GAAGGGGGTGAGGGGAGG 60.693 72.222 0.00 0.00 0.00 4.30
198 199 2.124996 TGAAGGGGGTGAGGGGAG 59.875 66.667 0.00 0.00 0.00 4.30
199 200 2.204090 GTGAAGGGGGTGAGGGGA 60.204 66.667 0.00 0.00 0.00 4.81
200 201 2.204151 AGTGAAGGGGGTGAGGGG 60.204 66.667 0.00 0.00 0.00 4.79
201 202 2.301738 GGAGTGAAGGGGGTGAGGG 61.302 68.421 0.00 0.00 0.00 4.30
202 203 2.660064 CGGAGTGAAGGGGGTGAGG 61.660 68.421 0.00 0.00 0.00 3.86
203 204 2.982130 CGGAGTGAAGGGGGTGAG 59.018 66.667 0.00 0.00 0.00 3.51
204 205 3.319198 GCGGAGTGAAGGGGGTGA 61.319 66.667 0.00 0.00 0.00 4.02
205 206 4.410400 GGCGGAGTGAAGGGGGTG 62.410 72.222 0.00 0.00 0.00 4.61
210 211 4.452733 GTCGGGGCGGAGTGAAGG 62.453 72.222 0.00 0.00 0.00 3.46
211 212 4.452733 GGTCGGGGCGGAGTGAAG 62.453 72.222 0.00 0.00 0.00 3.02
224 225 3.622826 AAGGTGTGGGTCGGGTCG 61.623 66.667 0.00 0.00 0.00 4.79
225 226 2.032071 CAAGGTGTGGGTCGGGTC 59.968 66.667 0.00 0.00 0.00 4.46
226 227 3.566210 CCAAGGTGTGGGTCGGGT 61.566 66.667 0.00 0.00 44.64 5.28
234 235 3.755905 TGCACATGTATTACCAAGGTGTG 59.244 43.478 0.00 0.94 38.69 3.82
235 236 4.009675 CTGCACATGTATTACCAAGGTGT 58.990 43.478 0.00 0.00 0.00 4.16
236 237 3.181497 GCTGCACATGTATTACCAAGGTG 60.181 47.826 0.00 0.00 0.00 4.00
237 238 3.016736 GCTGCACATGTATTACCAAGGT 58.983 45.455 0.00 0.00 0.00 3.50
238 239 2.032054 CGCTGCACATGTATTACCAAGG 59.968 50.000 0.00 0.00 0.00 3.61
239 240 2.032054 CCGCTGCACATGTATTACCAAG 59.968 50.000 0.00 0.00 0.00 3.61
240 241 2.013400 CCGCTGCACATGTATTACCAA 58.987 47.619 0.00 0.00 0.00 3.67
241 242 1.662517 CCGCTGCACATGTATTACCA 58.337 50.000 0.00 0.00 0.00 3.25
242 243 0.307760 GCCGCTGCACATGTATTACC 59.692 55.000 0.00 0.00 37.47 2.85
243 244 0.042188 CGCCGCTGCACATGTATTAC 60.042 55.000 0.00 0.00 37.32 1.89
244 245 1.157257 CCGCCGCTGCACATGTATTA 61.157 55.000 0.00 0.00 37.32 0.98
245 246 2.472059 CCGCCGCTGCACATGTATT 61.472 57.895 0.00 0.00 37.32 1.89
246 247 2.896854 CCGCCGCTGCACATGTAT 60.897 61.111 0.00 0.00 37.32 2.29
264 265 4.559063 CTCCTCGCCATGGCCCTG 62.559 72.222 30.79 19.41 37.98 4.45
267 268 4.864334 CACCTCCTCGCCATGGCC 62.864 72.222 30.79 13.37 37.98 5.36
269 270 3.790437 AGCACCTCCTCGCCATGG 61.790 66.667 7.63 7.63 0.00 3.66
270 271 2.513204 CAGCACCTCCTCGCCATG 60.513 66.667 0.00 0.00 0.00 3.66
271 272 4.479993 GCAGCACCTCCTCGCCAT 62.480 66.667 0.00 0.00 0.00 4.40
275 276 4.079850 AGCAGCAGCACCTCCTCG 62.080 66.667 3.17 0.00 45.49 4.63
276 277 2.436292 CAGCAGCAGCACCTCCTC 60.436 66.667 3.17 0.00 45.49 3.71
277 278 4.719106 GCAGCAGCAGCACCTCCT 62.719 66.667 4.63 0.00 45.49 3.69
278 279 4.719106 AGCAGCAGCAGCACCTCC 62.719 66.667 12.92 0.00 45.49 4.30
279 280 3.432588 CAGCAGCAGCAGCACCTC 61.433 66.667 12.92 0.00 45.49 3.85
291 292 0.530211 CTACCTAGCAGCAGCAGCAG 60.530 60.000 12.92 7.32 45.49 4.24
292 293 1.519246 CTACCTAGCAGCAGCAGCA 59.481 57.895 12.92 0.00 45.49 4.41
293 294 1.227497 CCTACCTAGCAGCAGCAGC 60.227 63.158 3.17 0.46 45.49 5.25
294 295 1.339610 CTACCTACCTAGCAGCAGCAG 59.660 57.143 3.17 0.00 45.49 4.24
295 296 1.403814 CTACCTACCTAGCAGCAGCA 58.596 55.000 3.17 0.00 45.49 4.41
296 297 0.676736 CCTACCTACCTAGCAGCAGC 59.323 60.000 0.00 0.00 42.56 5.25
297 298 2.074729 ACCTACCTACCTAGCAGCAG 57.925 55.000 0.00 0.00 0.00 4.24
298 299 2.158505 CCTACCTACCTACCTAGCAGCA 60.159 54.545 0.00 0.00 0.00 4.41
299 300 2.158490 ACCTACCTACCTACCTAGCAGC 60.158 54.545 0.00 0.00 0.00 5.25
300 301 3.880168 ACCTACCTACCTACCTAGCAG 57.120 52.381 0.00 0.00 0.00 4.24
301 302 3.654806 CCTACCTACCTACCTACCTAGCA 59.345 52.174 0.00 0.00 0.00 3.49
302 303 3.655291 ACCTACCTACCTACCTACCTAGC 59.345 52.174 0.00 0.00 0.00 3.42
303 304 5.487131 CCTACCTACCTACCTACCTACCTAG 59.513 52.000 0.00 0.00 0.00 3.02
304 305 5.415961 CCTACCTACCTACCTACCTACCTA 58.584 50.000 0.00 0.00 0.00 3.08
305 306 4.246978 CCTACCTACCTACCTACCTACCT 58.753 52.174 0.00 0.00 0.00 3.08
306 307 3.332187 CCCTACCTACCTACCTACCTACC 59.668 56.522 0.00 0.00 0.00 3.18
307 308 3.984090 ACCCTACCTACCTACCTACCTAC 59.016 52.174 0.00 0.00 0.00 3.18
308 309 4.317382 ACCCTACCTACCTACCTACCTA 57.683 50.000 0.00 0.00 0.00 3.08
309 310 3.172728 ACCCTACCTACCTACCTACCT 57.827 52.381 0.00 0.00 0.00 3.08
310 311 3.981516 AACCCTACCTACCTACCTACC 57.018 52.381 0.00 0.00 0.00 3.18
311 312 5.136068 AGAAACCCTACCTACCTACCTAC 57.864 47.826 0.00 0.00 0.00 3.18
312 313 5.821008 AAGAAACCCTACCTACCTACCTA 57.179 43.478 0.00 0.00 0.00 3.08
313 314 4.706645 AAGAAACCCTACCTACCTACCT 57.293 45.455 0.00 0.00 0.00 3.08
314 315 4.142071 CGAAAGAAACCCTACCTACCTACC 60.142 50.000 0.00 0.00 0.00 3.18
315 316 4.142071 CCGAAAGAAACCCTACCTACCTAC 60.142 50.000 0.00 0.00 0.00 3.18
316 317 4.026052 CCGAAAGAAACCCTACCTACCTA 58.974 47.826 0.00 0.00 0.00 3.08
317 318 2.836372 CCGAAAGAAACCCTACCTACCT 59.164 50.000 0.00 0.00 0.00 3.08
318 319 2.679059 GCCGAAAGAAACCCTACCTACC 60.679 54.545 0.00 0.00 0.00 3.18
319 320 2.625737 GCCGAAAGAAACCCTACCTAC 58.374 52.381 0.00 0.00 0.00 3.18
320 321 1.556451 GGCCGAAAGAAACCCTACCTA 59.444 52.381 0.00 0.00 0.00 3.08
321 322 0.327259 GGCCGAAAGAAACCCTACCT 59.673 55.000 0.00 0.00 0.00 3.08
322 323 0.327259 AGGCCGAAAGAAACCCTACC 59.673 55.000 0.00 0.00 0.00 3.18
323 324 1.450025 CAGGCCGAAAGAAACCCTAC 58.550 55.000 0.00 0.00 0.00 3.18
324 325 0.326927 CCAGGCCGAAAGAAACCCTA 59.673 55.000 0.00 0.00 0.00 3.53
325 326 1.074951 CCAGGCCGAAAGAAACCCT 59.925 57.895 0.00 0.00 0.00 4.34
326 327 0.538746 TTCCAGGCCGAAAGAAACCC 60.539 55.000 0.00 0.00 0.00 4.11
327 328 0.596577 GTTCCAGGCCGAAAGAAACC 59.403 55.000 0.00 0.00 0.00 3.27
328 329 1.314730 TGTTCCAGGCCGAAAGAAAC 58.685 50.000 0.00 0.00 0.00 2.78
329 330 1.953686 CTTGTTCCAGGCCGAAAGAAA 59.046 47.619 0.00 0.00 0.00 2.52
330 331 1.142060 TCTTGTTCCAGGCCGAAAGAA 59.858 47.619 0.00 0.00 0.00 2.52
331 332 0.762418 TCTTGTTCCAGGCCGAAAGA 59.238 50.000 0.00 0.00 0.00 2.52
332 333 1.537202 CTTCTTGTTCCAGGCCGAAAG 59.463 52.381 0.00 0.00 0.00 2.62
333 334 1.142060 TCTTCTTGTTCCAGGCCGAAA 59.858 47.619 0.00 0.00 0.00 3.46
334 335 0.762418 TCTTCTTGTTCCAGGCCGAA 59.238 50.000 0.00 0.00 0.00 4.30
335 336 0.034896 GTCTTCTTGTTCCAGGCCGA 59.965 55.000 0.00 0.00 0.00 5.54
336 337 0.955919 GGTCTTCTTGTTCCAGGCCG 60.956 60.000 0.00 0.00 0.00 6.13
337 338 0.955919 CGGTCTTCTTGTTCCAGGCC 60.956 60.000 0.00 0.00 0.00 5.19
338 339 0.250338 ACGGTCTTCTTGTTCCAGGC 60.250 55.000 0.00 0.00 0.00 4.85
339 340 2.685100 GTACGGTCTTCTTGTTCCAGG 58.315 52.381 0.00 0.00 0.00 4.45
340 341 2.030540 TCGTACGGTCTTCTTGTTCCAG 60.031 50.000 16.52 0.00 0.00 3.86
341 342 1.955778 TCGTACGGTCTTCTTGTTCCA 59.044 47.619 16.52 0.00 0.00 3.53
342 343 2.323059 GTCGTACGGTCTTCTTGTTCC 58.677 52.381 16.52 0.00 0.00 3.62
343 344 1.974680 CGTCGTACGGTCTTCTTGTTC 59.025 52.381 16.52 0.00 38.08 3.18
344 345 1.927710 GCGTCGTACGGTCTTCTTGTT 60.928 52.381 16.52 0.00 42.82 2.83
345 346 0.386478 GCGTCGTACGGTCTTCTTGT 60.386 55.000 16.52 0.00 42.82 3.16
346 347 1.069378 GGCGTCGTACGGTCTTCTTG 61.069 60.000 16.52 0.00 42.82 3.02
347 348 1.211190 GGCGTCGTACGGTCTTCTT 59.789 57.895 16.52 0.00 42.82 2.52
348 349 2.873288 GGCGTCGTACGGTCTTCT 59.127 61.111 16.52 0.00 42.82 2.85
349 350 2.575262 CGGCGTCGTACGGTCTTC 60.575 66.667 16.52 1.24 42.82 2.87
350 351 3.049674 TCGGCGTCGTACGGTCTT 61.050 61.111 16.52 0.00 42.82 3.01
351 352 3.793144 GTCGGCGTCGTACGGTCT 61.793 66.667 16.52 0.00 42.82 3.85
356 357 4.134187 TCGTCGTCGGCGTCGTAC 62.134 66.667 26.20 18.69 46.29 3.67
357 358 3.842126 CTCGTCGTCGGCGTCGTA 61.842 66.667 26.20 13.50 46.29 3.43
360 361 4.517703 CTCCTCGTCGTCGGCGTC 62.518 72.222 19.81 1.92 39.49 5.19
362 363 3.720106 CTTCTCCTCGTCGTCGGCG 62.720 68.421 14.12 14.12 37.69 6.46
363 364 2.100603 CTTCTCCTCGTCGTCGGC 59.899 66.667 1.55 0.00 37.69 5.54
364 365 1.707239 CTCCTTCTCCTCGTCGTCGG 61.707 65.000 1.55 0.00 37.69 4.79
365 366 1.707239 CCTCCTTCTCCTCGTCGTCG 61.707 65.000 0.00 0.00 38.55 5.12
366 367 0.392729 TCCTCCTTCTCCTCGTCGTC 60.393 60.000 0.00 0.00 0.00 4.20
367 368 0.393267 CTCCTCCTTCTCCTCGTCGT 60.393 60.000 0.00 0.00 0.00 4.34
368 369 1.720694 GCTCCTCCTTCTCCTCGTCG 61.721 65.000 0.00 0.00 0.00 5.12
369 370 1.720694 CGCTCCTCCTTCTCCTCGTC 61.721 65.000 0.00 0.00 0.00 4.20
370 371 1.751162 CGCTCCTCCTTCTCCTCGT 60.751 63.158 0.00 0.00 0.00 4.18
371 372 1.720694 GACGCTCCTCCTTCTCCTCG 61.721 65.000 0.00 0.00 0.00 4.63
372 373 1.388837 GGACGCTCCTCCTTCTCCTC 61.389 65.000 0.00 0.00 32.53 3.71
373 374 1.380650 GGACGCTCCTCCTTCTCCT 60.381 63.158 0.00 0.00 32.53 3.69
374 375 1.671901 CTGGACGCTCCTCCTTCTCC 61.672 65.000 5.77 0.00 37.46 3.71
375 376 1.671901 CCTGGACGCTCCTCCTTCTC 61.672 65.000 5.77 0.00 37.46 2.87
376 377 1.684049 CCTGGACGCTCCTCCTTCT 60.684 63.158 5.77 0.00 37.46 2.85
377 378 2.726351 CCCTGGACGCTCCTCCTTC 61.726 68.421 0.00 0.00 37.46 3.46
378 379 2.685380 CCCTGGACGCTCCTCCTT 60.685 66.667 0.00 0.00 37.46 3.36
379 380 4.787280 CCCCTGGACGCTCCTCCT 62.787 72.222 0.00 0.00 37.46 3.69
387 388 4.227134 CAGATCCGCCCCTGGACG 62.227 72.222 0.00 0.00 41.85 4.79
388 389 4.554036 GCAGATCCGCCCCTGGAC 62.554 72.222 0.00 0.00 41.85 4.02
389 390 3.389139 TAGCAGATCCGCCCCTGGA 62.389 63.158 0.00 0.00 43.58 3.86
390 391 2.844362 TAGCAGATCCGCCCCTGG 60.844 66.667 0.00 0.00 0.00 4.45
391 392 2.739784 CTAGCAGATCCGCCCCTG 59.260 66.667 0.00 0.00 0.00 4.45
392 393 3.237741 GCTAGCAGATCCGCCCCT 61.238 66.667 10.63 0.00 0.00 4.79
393 394 4.671569 CGCTAGCAGATCCGCCCC 62.672 72.222 16.45 0.00 0.00 5.80
405 406 3.432051 CTCACCGGGAAGGCGCTAG 62.432 68.421 7.64 0.00 46.52 3.42
406 407 3.458163 CTCACCGGGAAGGCGCTA 61.458 66.667 7.64 0.00 46.52 4.26
412 413 4.821589 GAGGCGCTCACCGGGAAG 62.822 72.222 7.64 3.26 37.44 3.46
416 417 4.200283 GAGAGAGGCGCTCACCGG 62.200 72.222 20.44 0.00 46.45 5.28
417 418 3.137459 AGAGAGAGGCGCTCACCG 61.137 66.667 20.44 0.00 46.45 4.94
418 419 1.599606 TTCAGAGAGAGGCGCTCACC 61.600 60.000 20.44 11.21 46.45 4.02
419 420 0.457681 GTTCAGAGAGAGGCGCTCAC 60.458 60.000 20.44 14.04 46.45 3.51
420 421 1.599606 GGTTCAGAGAGAGGCGCTCA 61.600 60.000 20.44 0.00 46.45 4.26
421 422 1.140804 GGTTCAGAGAGAGGCGCTC 59.859 63.158 10.52 10.52 44.29 5.03
422 423 2.705821 CGGTTCAGAGAGAGGCGCT 61.706 63.158 7.64 0.00 0.00 5.92
423 424 2.202676 CGGTTCAGAGAGAGGCGC 60.203 66.667 0.00 0.00 0.00 6.53
424 425 1.388065 ATCCGGTTCAGAGAGAGGCG 61.388 60.000 0.00 0.00 0.00 5.52
425 426 0.387565 GATCCGGTTCAGAGAGAGGC 59.612 60.000 7.68 0.00 0.00 4.70
426 427 2.065899 AGATCCGGTTCAGAGAGAGG 57.934 55.000 14.83 0.00 0.00 3.69
427 428 3.756434 GGATAGATCCGGTTCAGAGAGAG 59.244 52.174 14.83 0.00 37.19 3.20
428 429 3.757270 GGATAGATCCGGTTCAGAGAGA 58.243 50.000 14.83 0.00 37.19 3.10
441 442 2.344950 CAAGAGCGGCATGGATAGATC 58.655 52.381 1.45 0.00 0.00 2.75
442 443 1.002888 CCAAGAGCGGCATGGATAGAT 59.997 52.381 12.44 0.00 36.27 1.98
443 444 0.394192 CCAAGAGCGGCATGGATAGA 59.606 55.000 12.44 0.00 36.27 1.98
444 445 0.394192 TCCAAGAGCGGCATGGATAG 59.606 55.000 15.39 0.00 38.30 2.08
445 446 2.526958 TCCAAGAGCGGCATGGATA 58.473 52.632 15.39 0.00 38.30 2.59
446 447 1.842007 ATCCAAGAGCGGCATGGAT 59.158 52.632 21.79 21.79 46.28 3.41
447 448 0.034186 AAATCCAAGAGCGGCATGGA 60.034 50.000 19.76 19.76 46.60 3.41
448 449 0.819582 AAAATCCAAGAGCGGCATGG 59.180 50.000 1.45 7.94 35.49 3.66
449 450 1.473677 TGAAAATCCAAGAGCGGCATG 59.526 47.619 1.45 0.00 0.00 4.06
450 451 1.838112 TGAAAATCCAAGAGCGGCAT 58.162 45.000 1.45 0.00 0.00 4.40
451 452 1.614996 TTGAAAATCCAAGAGCGGCA 58.385 45.000 1.45 0.00 0.00 5.69
452 453 2.723124 TTTGAAAATCCAAGAGCGGC 57.277 45.000 0.00 0.00 0.00 6.53
453 454 5.229423 TGAAATTTGAAAATCCAAGAGCGG 58.771 37.500 0.00 0.00 0.00 5.52
454 455 5.922544 ACTGAAATTTGAAAATCCAAGAGCG 59.077 36.000 0.00 0.00 0.00 5.03
455 456 6.703165 ACACTGAAATTTGAAAATCCAAGAGC 59.297 34.615 0.00 0.00 0.00 4.09
456 457 8.652810 AACACTGAAATTTGAAAATCCAAGAG 57.347 30.769 0.00 0.00 0.00 2.85
457 458 7.710475 GGAACACTGAAATTTGAAAATCCAAGA 59.290 33.333 0.00 0.00 0.00 3.02
458 459 7.041848 GGGAACACTGAAATTTGAAAATCCAAG 60.042 37.037 0.00 0.00 0.00 3.61
459 460 6.765512 GGGAACACTGAAATTTGAAAATCCAA 59.234 34.615 0.00 0.00 0.00 3.53
460 461 6.099557 AGGGAACACTGAAATTTGAAAATCCA 59.900 34.615 0.00 0.00 0.00 3.41
461 462 6.524734 AGGGAACACTGAAATTTGAAAATCC 58.475 36.000 0.00 0.00 0.00 3.01
462 463 7.928167 AGAAGGGAACACTGAAATTTGAAAATC 59.072 33.333 0.00 0.00 0.00 2.17
463 464 7.795047 AGAAGGGAACACTGAAATTTGAAAAT 58.205 30.769 0.00 0.00 0.00 1.82
464 465 7.181569 AGAAGGGAACACTGAAATTTGAAAA 57.818 32.000 0.00 0.00 0.00 2.29
465 466 6.790232 AGAAGGGAACACTGAAATTTGAAA 57.210 33.333 0.00 0.00 0.00 2.69
466 467 6.607198 AGAAGAAGGGAACACTGAAATTTGAA 59.393 34.615 0.00 0.00 0.00 2.69
467 468 6.129179 AGAAGAAGGGAACACTGAAATTTGA 58.871 36.000 0.00 0.00 0.00 2.69
468 469 6.396829 AGAAGAAGGGAACACTGAAATTTG 57.603 37.500 0.00 0.00 0.00 2.32
469 470 6.836007 AGAAGAAGAAGGGAACACTGAAATTT 59.164 34.615 0.00 0.00 0.00 1.82
470 471 6.368805 AGAAGAAGAAGGGAACACTGAAATT 58.631 36.000 0.00 0.00 0.00 1.82
471 472 5.946486 AGAAGAAGAAGGGAACACTGAAAT 58.054 37.500 0.00 0.00 0.00 2.17
472 473 5.131142 AGAGAAGAAGAAGGGAACACTGAAA 59.869 40.000 0.00 0.00 0.00 2.69
473 474 4.656112 AGAGAAGAAGAAGGGAACACTGAA 59.344 41.667 0.00 0.00 0.00 3.02
474 475 4.227197 AGAGAAGAAGAAGGGAACACTGA 58.773 43.478 0.00 0.00 0.00 3.41
475 476 4.562552 GGAGAGAAGAAGAAGGGAACACTG 60.563 50.000 0.00 0.00 0.00 3.66
476 477 3.580895 GGAGAGAAGAAGAAGGGAACACT 59.419 47.826 0.00 0.00 0.00 3.55
477 478 3.325135 TGGAGAGAAGAAGAAGGGAACAC 59.675 47.826 0.00 0.00 0.00 3.32
478 479 3.587498 TGGAGAGAAGAAGAAGGGAACA 58.413 45.455 0.00 0.00 0.00 3.18
479 480 4.512484 CATGGAGAGAAGAAGAAGGGAAC 58.488 47.826 0.00 0.00 0.00 3.62
480 481 3.054802 GCATGGAGAGAAGAAGAAGGGAA 60.055 47.826 0.00 0.00 0.00 3.97
481 482 2.503356 GCATGGAGAGAAGAAGAAGGGA 59.497 50.000 0.00 0.00 0.00 4.20
482 483 2.504996 AGCATGGAGAGAAGAAGAAGGG 59.495 50.000 0.00 0.00 0.00 3.95
483 484 3.432046 GGAGCATGGAGAGAAGAAGAAGG 60.432 52.174 0.00 0.00 0.00 3.46
484 485 3.451902 AGGAGCATGGAGAGAAGAAGAAG 59.548 47.826 0.00 0.00 0.00 2.85
485 486 3.448934 AGGAGCATGGAGAGAAGAAGAA 58.551 45.455 0.00 0.00 0.00 2.52
486 487 3.113191 AGGAGCATGGAGAGAAGAAGA 57.887 47.619 0.00 0.00 0.00 2.87
487 488 3.197333 TGAAGGAGCATGGAGAGAAGAAG 59.803 47.826 0.00 0.00 0.00 2.85
488 489 3.176411 TGAAGGAGCATGGAGAGAAGAA 58.824 45.455 0.00 0.00 0.00 2.52
489 490 2.825223 TGAAGGAGCATGGAGAGAAGA 58.175 47.619 0.00 0.00 0.00 2.87
490 491 3.468770 CATGAAGGAGCATGGAGAGAAG 58.531 50.000 0.00 0.00 41.45 2.85
491 492 3.555527 CATGAAGGAGCATGGAGAGAA 57.444 47.619 0.00 0.00 41.45 2.87
499 500 1.925888 GGGGGACATGAAGGAGCAT 59.074 57.895 0.00 0.00 0.00 3.79
500 501 3.415186 GGGGGACATGAAGGAGCA 58.585 61.111 0.00 0.00 0.00 4.26
517 518 3.891432 AAGGTGGGAGGGTGGGAGG 62.891 68.421 0.00 0.00 0.00 4.30
518 519 2.204151 AAGGTGGGAGGGTGGGAG 60.204 66.667 0.00 0.00 0.00 4.30
519 520 2.204090 GAAGGTGGGAGGGTGGGA 60.204 66.667 0.00 0.00 0.00 4.37
520 521 1.852626 AAGAAGGTGGGAGGGTGGG 60.853 63.158 0.00 0.00 0.00 4.61
521 522 1.685820 GAAGAAGGTGGGAGGGTGG 59.314 63.158 0.00 0.00 0.00 4.61
522 523 1.192146 TCGAAGAAGGTGGGAGGGTG 61.192 60.000 0.00 0.00 0.00 4.61
523 524 0.252742 ATCGAAGAAGGTGGGAGGGT 60.253 55.000 0.00 0.00 43.58 4.34
524 525 0.912486 AATCGAAGAAGGTGGGAGGG 59.088 55.000 0.00 0.00 43.58 4.30
525 526 2.237392 AGAAATCGAAGAAGGTGGGAGG 59.763 50.000 0.00 0.00 43.58 4.30
526 527 3.526534 GAGAAATCGAAGAAGGTGGGAG 58.473 50.000 0.00 0.00 43.58 4.30
527 528 2.236395 GGAGAAATCGAAGAAGGTGGGA 59.764 50.000 0.00 0.00 43.58 4.37
528 529 2.633488 GGAGAAATCGAAGAAGGTGGG 58.367 52.381 0.00 0.00 43.58 4.61
529 530 2.271800 CGGAGAAATCGAAGAAGGTGG 58.728 52.381 0.00 0.00 43.58 4.61
530 531 1.661112 GCGGAGAAATCGAAGAAGGTG 59.339 52.381 0.00 0.00 43.58 4.00
531 532 1.550976 AGCGGAGAAATCGAAGAAGGT 59.449 47.619 0.00 0.00 43.58 3.50
532 533 1.929836 CAGCGGAGAAATCGAAGAAGG 59.070 52.381 0.00 0.00 43.58 3.46
533 534 1.325943 GCAGCGGAGAAATCGAAGAAG 59.674 52.381 0.00 0.00 43.58 2.85
534 535 1.359848 GCAGCGGAGAAATCGAAGAA 58.640 50.000 0.00 0.00 43.58 2.52
535 536 0.802222 CGCAGCGGAGAAATCGAAGA 60.802 55.000 7.00 0.00 45.75 2.87
536 537 1.078759 ACGCAGCGGAGAAATCGAAG 61.079 55.000 21.15 0.00 0.00 3.79
537 538 1.080093 ACGCAGCGGAGAAATCGAA 60.080 52.632 21.15 0.00 0.00 3.71
538 539 1.805539 CACGCAGCGGAGAAATCGA 60.806 57.895 21.15 0.00 0.00 3.59
539 540 2.697425 CACGCAGCGGAGAAATCG 59.303 61.111 21.15 0.00 0.00 3.34
540 541 0.811616 ATCCACGCAGCGGAGAAATC 60.812 55.000 21.15 0.00 44.42 2.17
541 542 0.392998 AATCCACGCAGCGGAGAAAT 60.393 50.000 21.15 6.02 44.42 2.17
542 543 0.605319 AAATCCACGCAGCGGAGAAA 60.605 50.000 21.15 3.60 44.42 2.52
543 544 0.605319 AAAATCCACGCAGCGGAGAA 60.605 50.000 21.15 1.49 44.42 2.87
544 545 0.605319 AAAAATCCACGCAGCGGAGA 60.605 50.000 21.15 15.54 44.42 3.71
545 546 0.179189 GAAAAATCCACGCAGCGGAG 60.179 55.000 21.15 11.23 44.42 4.63
546 547 1.582610 GGAAAAATCCACGCAGCGGA 61.583 55.000 21.15 8.09 45.70 5.54
547 548 1.154035 GGAAAAATCCACGCAGCGG 60.154 57.895 21.15 8.06 0.00 5.52
548 549 0.454957 CAGGAAAAATCCACGCAGCG 60.455 55.000 14.82 14.82 0.00 5.18
549 550 0.598065 ACAGGAAAAATCCACGCAGC 59.402 50.000 0.00 0.00 0.00 5.25
550 551 1.135972 CGACAGGAAAAATCCACGCAG 60.136 52.381 0.00 0.00 0.00 5.18
551 552 0.871722 CGACAGGAAAAATCCACGCA 59.128 50.000 0.00 0.00 0.00 5.24
552 553 0.168128 CCGACAGGAAAAATCCACGC 59.832 55.000 0.00 0.00 41.02 5.34
553 554 0.168128 GCCGACAGGAAAAATCCACG 59.832 55.000 0.00 0.84 41.02 4.94
554 555 0.526211 GGCCGACAGGAAAAATCCAC 59.474 55.000 0.00 0.00 41.02 4.02
555 556 0.610785 GGGCCGACAGGAAAAATCCA 60.611 55.000 0.00 0.00 41.02 3.41
556 557 0.323451 AGGGCCGACAGGAAAAATCC 60.323 55.000 0.00 0.00 41.02 3.01
557 558 1.095600 GAGGGCCGACAGGAAAAATC 58.904 55.000 0.00 0.00 41.02 2.17
558 559 0.323451 GGAGGGCCGACAGGAAAAAT 60.323 55.000 0.00 0.00 41.02 1.82
559 560 1.074248 GGAGGGCCGACAGGAAAAA 59.926 57.895 0.00 0.00 41.02 1.94
560 561 1.497309 ATGGAGGGCCGACAGGAAAA 61.497 55.000 9.02 0.00 41.02 2.29
561 562 1.497309 AATGGAGGGCCGACAGGAAA 61.497 55.000 9.02 0.00 41.02 3.13
562 563 1.923395 AATGGAGGGCCGACAGGAA 60.923 57.895 9.02 0.00 41.02 3.36
563 564 2.285368 AATGGAGGGCCGACAGGA 60.285 61.111 9.02 0.00 41.02 3.86
564 565 2.124570 CAATGGAGGGCCGACAGG 60.125 66.667 9.02 1.03 41.62 4.00
565 566 1.450312 GACAATGGAGGGCCGACAG 60.450 63.158 9.02 0.00 36.79 3.51
566 567 2.668632 GACAATGGAGGGCCGACA 59.331 61.111 5.68 5.68 36.79 4.35
567 568 2.124695 GGACAATGGAGGGCCGAC 60.125 66.667 0.00 0.00 36.79 4.79
568 569 2.285368 AGGACAATGGAGGGCCGA 60.285 61.111 0.00 0.00 36.79 5.54
569 570 2.190578 GAGGACAATGGAGGGCCG 59.809 66.667 0.00 0.00 36.79 6.13
570 571 2.190578 CGAGGACAATGGAGGGCC 59.809 66.667 0.00 0.00 0.00 5.80
571 572 2.190578 CCGAGGACAATGGAGGGC 59.809 66.667 0.00 0.00 0.00 5.19
572 573 2.190578 GCCGAGGACAATGGAGGG 59.809 66.667 0.00 0.00 0.00 4.30
573 574 1.144936 GAGCCGAGGACAATGGAGG 59.855 63.158 0.00 0.00 0.00 4.30
574 575 1.144936 GGAGCCGAGGACAATGGAG 59.855 63.158 0.00 0.00 0.00 3.86
575 576 2.367202 GGGAGCCGAGGACAATGGA 61.367 63.158 0.00 0.00 0.00 3.41
576 577 2.190578 GGGAGCCGAGGACAATGG 59.809 66.667 0.00 0.00 0.00 3.16
577 578 2.190578 GGGGAGCCGAGGACAATG 59.809 66.667 0.00 0.00 0.00 2.82
578 579 3.470888 CGGGGAGCCGAGGACAAT 61.471 66.667 0.00 0.00 34.88 2.71
615 616 4.292178 CTCAGATCCGCCCCGCTC 62.292 72.222 0.00 0.00 0.00 5.03
643 650 2.024414 GTGGGATTCTTGGGAAATCCG 58.976 52.381 8.38 0.00 38.76 4.18
651 658 1.065418 AGCGTTAGGTGGGATTCTTGG 60.065 52.381 0.00 0.00 0.00 3.61
654 661 1.209747 GGAAGCGTTAGGTGGGATTCT 59.790 52.381 0.00 0.00 0.00 2.40
670 677 2.672996 CTGTTGGTGCGGGGGAAG 60.673 66.667 0.00 0.00 0.00 3.46
671 678 4.966787 GCTGTTGGTGCGGGGGAA 62.967 66.667 0.00 0.00 0.00 3.97
720 727 8.809066 GTGGGGAAAGTGGTATTTTAATTTACT 58.191 33.333 0.00 0.00 0.00 2.24
721 728 8.036575 GGTGGGGAAAGTGGTATTTTAATTTAC 58.963 37.037 0.00 0.00 0.00 2.01
722 729 7.733501 TGGTGGGGAAAGTGGTATTTTAATTTA 59.266 33.333 0.00 0.00 0.00 1.40
733 740 2.931921 GGTGGTGGGGAAAGTGGT 59.068 61.111 0.00 0.00 0.00 4.16
778 785 5.981088 TTTCTTGGTCAACATGCATACAT 57.019 34.783 0.00 0.00 36.79 2.29
779 786 5.781210 TTTTCTTGGTCAACATGCATACA 57.219 34.783 0.00 0.00 0.00 2.29
780 787 8.931385 ATTATTTTCTTGGTCAACATGCATAC 57.069 30.769 0.00 0.00 0.00 2.39
781 788 9.941325 AAATTATTTTCTTGGTCAACATGCATA 57.059 25.926 0.00 0.00 0.00 3.14
878 894 0.652592 GATTGCGCTGCGTGTAGAAT 59.347 50.000 24.04 13.18 0.00 2.40
892 908 1.305219 TGTTGGCAGCGGTAGATTGC 61.305 55.000 0.00 0.00 37.11 3.56
893 909 1.135689 GTTGTTGGCAGCGGTAGATTG 60.136 52.381 0.00 0.00 0.00 2.67
925 941 3.856521 CAGAGTAGTTGATCAAGACGCAG 59.143 47.826 19.66 11.96 0.00 5.18
928 944 6.153067 AGAAACAGAGTAGTTGATCAAGACG 58.847 40.000 8.80 1.03 0.00 4.18
935 951 8.646900 AGAAGAAGAAGAAACAGAGTAGTTGAT 58.353 33.333 0.00 0.00 0.00 2.57
941 957 6.582636 TGCAAGAAGAAGAAGAAACAGAGTA 58.417 36.000 0.00 0.00 0.00 2.59
978 1006 3.479269 GCCTCCTTGCGACGTTCG 61.479 66.667 0.00 0.00 43.89 3.95
1086 1114 3.415087 GCCACCATCAGGGGCTCT 61.415 66.667 0.00 0.00 43.76 4.09
1206 1240 4.289101 TCGACGGGGTGTGGAGGA 62.289 66.667 0.00 0.00 31.12 3.71
1368 1461 1.201647 TGCAACCTCGTAGCTGACTAC 59.798 52.381 0.00 0.00 44.57 2.73
1370 1463 0.898320 ATGCAACCTCGTAGCTGACT 59.102 50.000 0.00 0.00 0.00 3.41
1371 1464 2.579207 TATGCAACCTCGTAGCTGAC 57.421 50.000 0.00 0.00 0.00 3.51
1375 1468 3.919216 AGATCATATGCAACCTCGTAGC 58.081 45.455 0.00 0.00 0.00 3.58
1420 1641 9.477484 CAAGATTAATAATAGAGTGTACGCCTT 57.523 33.333 1.98 0.00 0.00 4.35
1421 1642 8.639761 ACAAGATTAATAATAGAGTGTACGCCT 58.360 33.333 1.98 2.87 0.00 5.52
1467 1688 1.500474 TCCTAGCTACCTTGCATGCT 58.500 50.000 20.33 0.00 39.30 3.79
1544 1765 8.594550 GGTATAGTTAGTGATGTCCCATGTAAT 58.405 37.037 0.00 0.00 0.00 1.89
1570 1791 2.501723 TGCCTTCCTAGCTTCTGGTAAG 59.498 50.000 0.00 0.00 0.00 2.34
1589 1810 2.503375 GTGTGCATGCTTCGCTGC 60.503 61.111 20.33 0.00 38.87 5.25
1640 1901 3.991773 TGTTGCCTACTTTGTCATCGTAC 59.008 43.478 0.00 0.00 0.00 3.67
1641 1902 4.260139 TGTTGCCTACTTTGTCATCGTA 57.740 40.909 0.00 0.00 0.00 3.43
1642 1903 3.120321 TGTTGCCTACTTTGTCATCGT 57.880 42.857 0.00 0.00 0.00 3.73
1643 1904 4.024048 ACTTTGTTGCCTACTTTGTCATCG 60.024 41.667 0.00 0.00 0.00 3.84
1646 1907 4.142271 CCAACTTTGTTGCCTACTTTGTCA 60.142 41.667 5.04 0.00 0.00 3.58
1692 1955 2.353011 GGTTCAATTGAGGCATGGTGTG 60.353 50.000 8.41 0.00 0.00 3.82
1728 1991 7.982354 GCCTTATATGTCAAGTCTGTTCTACTT 59.018 37.037 0.00 0.00 37.67 2.24
1856 2174 1.078426 CCCCTGCCTACTTTGTCGG 60.078 63.158 0.00 0.00 0.00 4.79
1925 2243 4.129380 ACTGAACTTTTGTAACGGTACCC 58.871 43.478 8.43 0.00 30.75 3.69
1958 2276 2.926200 CAACATAGGTCAGACTCGCTTG 59.074 50.000 0.00 0.00 0.00 4.01
1964 2282 4.623932 TCAAAGCAACATAGGTCAGACT 57.376 40.909 0.00 0.00 0.00 3.24
2004 2331 2.223758 GGCGGAGTCTGTTCTATACACC 60.224 54.545 0.00 0.00 32.10 4.16
2107 2439 9.583765 ACAATCTCGTATCAGATATCAATGATG 57.416 33.333 14.65 1.11 36.81 3.07
2124 2456 4.579869 AGGCAAGATACAAACAATCTCGT 58.420 39.130 0.00 0.00 32.48 4.18
2126 2458 6.913170 TGAAAGGCAAGATACAAACAATCTC 58.087 36.000 0.00 0.00 32.48 2.75
2138 2470 3.011032 AGGGTCATTCTGAAAGGCAAGAT 59.989 43.478 0.00 0.00 0.00 2.40
2352 2686 2.184533 TCAATCCTCACTTTCGGGCTA 58.815 47.619 0.00 0.00 0.00 3.93
2543 2918 5.010112 TGAGGACTCAACTCAACTCAACTAG 59.990 44.000 0.00 0.00 41.66 2.57
2914 3326 4.202315 TGCTGCCTAAGAACTGTGTAAAGA 60.202 41.667 0.00 0.00 0.00 2.52
2955 3367 1.405256 CCACAGGCTGCAAACACAAAA 60.405 47.619 15.89 0.00 0.00 2.44
2956 3368 0.175302 CCACAGGCTGCAAACACAAA 59.825 50.000 15.89 0.00 0.00 2.83
3004 3420 3.055675 AGGGTCCGTGAAAATTACATCGA 60.056 43.478 0.00 0.00 0.00 3.59
3005 3421 3.267483 AGGGTCCGTGAAAATTACATCG 58.733 45.455 0.00 0.00 0.00 3.84
3020 3436 7.396339 ACCAAGTTCATCTAAAAATAAGGGTCC 59.604 37.037 0.00 0.00 0.00 4.46
3027 3443 9.753674 AGATTGGACCAAGTTCATCTAAAAATA 57.246 29.630 13.43 0.00 0.00 1.40
3028 3444 8.526147 CAGATTGGACCAAGTTCATCTAAAAAT 58.474 33.333 13.43 0.00 0.00 1.82
3051 3467 4.206477 ACAGCAGTATTGTGCATACAGA 57.794 40.909 0.00 0.00 46.60 3.41
3056 3472 4.943093 TCATGTTACAGCAGTATTGTGCAT 59.057 37.500 0.00 0.00 46.60 3.96
3134 3550 2.460669 AGATTGTCCATCTTTTGGCCC 58.539 47.619 0.00 0.00 46.01 5.80
3194 3611 9.311916 CAACAACACTTTGATTTCAAAAGGATA 57.688 29.630 7.13 0.00 44.24 2.59
3198 3615 6.250089 GCCAACAACACTTTGATTTCAAAAG 58.750 36.000 7.13 5.66 44.24 2.27
3255 3677 1.134848 TCAGCTTTGCAACAAACACCC 60.135 47.619 0.00 0.00 0.00 4.61
3256 3678 2.292103 TCAGCTTTGCAACAAACACC 57.708 45.000 0.00 0.00 0.00 4.16
3257 3679 2.033492 GCATCAGCTTTGCAACAAACAC 60.033 45.455 12.45 0.00 39.90 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.