>input_sequence_52974
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-------------------------------------------------------------------ATGGAGCACTACA
CCATGAGGCTCAGCGCGGGCGGAGGGGCCACGCCCACCCAGCAGCAGCAGCAGCAGCAGCTCTGCCCCTGGGGAGAGCCC
C------TGATGGTGGCGGCGCCTGACCGAAGGTCGAGGTTCTGGCAGATGGACGTGGCCGTGGCGGCACAGCCGGCCCG
CATCGAGGTCATATGCCCGCTGCCGCGACGCCCGGCCCGTCCTCCACACCCCGTCGAGCCCTTCGGCAGGGCCACCTCCA
GGCCTAACAACGGGTGGGTGTGGTAACTCTC---------TCATCATCATCATCATCCAGTTGCTTGCATACATG-----
----TTGTTGTGTGTTTAGTTAAT--------------------------------------T---TAACTTGAATTGCT
GATTGATATGTGGTATTAGCGTAGTCAGC---------------------------------------------------
--------------------------------------------------------------------------TACGAG
GTTGCA---TATGATCTTGTTAGAATCATGATTGTGTAATAAGGCGTACACTCTATTATTAATCTTGTGCAGCAGCAAGT
AGGCATAAGCATGCAAGGTAGCTAGGATTTTTTTTTGGAGGGAAAAGAAACATGATGTAGGGTGCTTATAACGGTCGAGA
GATTATTACATGGGACATCACTAACTATACCTTACCAGAAGCTAGGAAGGCAGCGAAGCATGCACACGTTATCAGAACCT
----------------------------------------GCAGACAGCAAAGCGTGCACGTACGAT--GACAAAGTAGG
CAACAAAGTTGGTTTAGGGTTTGCATCTTGCGAGCACACCATGCCTCAATTGAACCAACAAAAATTAGTGAAGTAG-AAC
AGACTTGACATATAAGGCTATAACGGTCGATAGCTTCTTTCATGAGACAACACTAA------------------------
------------ATGCTTAACTAGAAG------------------CATAAGCATGCAACGGCATAGTATGCAAACAGCAT
ACGGTTGTATGTCCCGACAAAGTAGGCAGGGGACATAATTTAGAGTTATATACCATTTGCACGGCACATTTCATAACCGT
CTGGGTACCGTTACAAAAGTTCAGTAGCGACAAATCAAGCGA---------GTCTGACCTATGTTGCTTTGATTTTTGCA
GGACGCTACCGGTGTATAGAACAGACTCCGCCTCTGATATCCTTGATCTCATCCTCAGCAAGGTAACCTTGGTGCTTTAA
ATCGCCAGTTCCTGTTTATCATA-TACA----GCACCACATCATTGATATCTGATACGAGATTGTTTGTA--TCTTGCCT
TTCAGAATGACCCTGATGTTGATACCGATTCCAACGGCCAGGCGGGCTTTTTCTGTGGCTCGCCTCCCGTCCGCACTAAC
AACCCCATTGTGAATGATCCGCAGTTTGGTAGGAATACCCCCTGTTTTTCTCCTCTAGGGAGCCCATTCAGCAAGATGCT
TGGTGGAAGAGCTGAAGTAGGCTCTCCGTCTTGCGGGGCGAGTAGTAGCCCGAAAGTGAGGATTGAAGGCTTTGCC----
-----------------------------------TGA------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---
>chr1A_1_TraesCS1A01G005500
TTGTACAGGATTGCTTGCTCGTATTAACCGCGTATACTTTGGGCGGGCGCGGGGGAGGGGGAGGAGGAGGGGGCGGAAAG
AGAGAAACCGCAGGCAGGAAGAGGGTGACGTGTCATCCGGTGTAGGCCGCGATAAGAAGGGGCCGCGGGGCGTGTGGCCG
TCGCAAGGCCGGAACAGCCAGCCAGACCCCCTCCCTCCCTCCCCTCACCCCCTTCACTCCGCCCCGACCCGACCCACACC
TTGGTAATACATGTGCAGCGGCGGCAGGGCCATGGCGAGGAGGTGCTGCTGCTGCTGCTGCTGCTAGGTAGGTAGGTAGG
TAGGTAGGGTTTCTTTCGGCCTGGAACAAGAAGACCGTACGACGCCGACGACGAGGAGAAGGAGGAGCGTCCAGGGGCGG
ATCTGCTAGCGCCTTCCCGGTGAGCGCCTCTCTCTGAACCGGATCTATCCATGCCGCTCTTGGATTTTCAAATTTCAGTG
TTCCCTTCTTCTTCTCTCCATGCTCCTTCATGTCCCCCCTCCCACCCTCCCACCTTCTTCGATTTCTCCGCTGCGTGGAT
TTTTCCTGTCGGCCCTCCATTGTCCTCGGCTCCCCGCTCCGCCGATTTCTGGCGCGAGCGGG-----GCGGATCTGA-GG
TTCCCCTCCCGGATTTCCCAAGAATCCCACCTAACGCTTCCCCCGCACCAACAGCAGATCCGCTCACACTTGTATCCAAA
AAAATTAGTAAATTAAAATACCACTTTCCCCACCACCGCCACCATGTGCAAGATTTCCTCCTCCATGTATGCATGTTGAC
CAAGAAAATAATTTTATCCGCAGCGCAAGAATCCGCTTCTTATTTTAT---------GCACGCGTGCGTGATTTCACCTG
CGGATCAACTACTATTCTACACGCAGCGCAATCTACCGCTGCCAACAACAGACAAATTTCCTGCGTCTTGATCAACTACT
CTGTTTC------------TTCTTCTTCTTGCAGTTGCAGGAGGCCGAACGTCGCAAGGAGGCAGGCATGGAGCACTACA
CCATGAGGCTCAGCGCGGGCGGAGGGGCCACGCCCACCCAGCAGCAGCAGCAGCAGCAGCTCTGCCCCTGGGGAGAGCCC
C------TGATGGTGGCGGCGCCTGACCGAAGGTCGAGGTTCTGGCAGATGGACGTGGCCGTGGCGGCACAGCCGGCCCG
CATCGAGGTCATATGCCCGCTGCCGCGACGCCCGGCCCGTCCTCCACACCCCGTCGAGCCCTTCGGCAGGGCCACCTCCA
GGCCTAACAACGGGTGGGTGTGGTAACTCTC---------TCATCATCATCATCATCCAGTTGCTTGCATACATG-----
----TTGTTGTGTGTTTAGTTAAT--------------------------------------T---TAACTTGAATTGCT
GATTGATATGTGGTATTAGCGTAGTCAGC---------------------------------------------------
--------------------------------------------------------------------------TACGAG
GTTGCA---TATGATCTTGTTAGAATCATGATTGTGTAATAAGGCGTACACTCTATTATTAATCTTGTGCAGCAGCAAGT
AGGCATAAGCATGCAAGGTAGCTAGGATTTTTTTTTGGAGGGAAAAGAAACATGATGTAGGGTGCTTATAACGGTCGAGA
GATTATTACATGGGACATCACTAACTATACCTTACCAGAAGCTAGGAAGGCAGCGAAGCATGCACACGTTATCAGAACCT
----------------------------------------GCAGACAGCAAAGCGTGCACGTACGAT--GACAAAGTAGG
CAACAAAGTTGGTTTAGGGTTTGCATCTTGCGAGCACACCATGCCTCAATTGAACCAACAAAAATTAGTGAAGTAG-AAC
AGACTTGACATATAAGGCTATAACGGTCGATAGCTTCTTTCATGAGACAACACTAA------------------------
------------ATGCTTAACTAGAAG------------------CATAAGCATGCAACGGCATAGTATGCAAACAGCAT
ACGGTTGTATGTCCCGACAAAGTAGGCAGGGGACATAATTTAGAGTTATATACCATTTGCACGGCACATTTCATAACCGT
CTGGGTACCGTTACAAAAGTTCAGTAGCGACAAATCAAGCGA---------GTCTGACCTATGTTGCTTTGATTTTTGCA
GGACGCTACCGGTGTATAGAACAGACTCCGCCTCTGATATCCTTGATCTCATCCTCAGCAAGGTAACCTTGGTGCTTTAA
ATCGCCAGTTCCTGTTTATCATA-TACA----GCACCACATCATTGATATCTGATACGAGATTGTTTGTA--TCTTGCCT
TTCAGAATGACCCTGATGTTGATACCGATTCCAACGGCCAGGCGGGCTTTTTCTGTGGCTCGCCTCCCGTCCGCACTAAC
AACCCCATTGTGAATGATCCGCAGTTTGGTAGGAATACCCCCTGTTTTTCTCCTCTAGGGAGCCCATTCAGCAAGATGCT
TGGTGGAAGAGCTGAAGTAGGCTCTCCGTCTTGCGGGGCGAGTAGTAGCCCGAAAGTGAGGATTGAAGGCTTTGCC----
-----------------------------------TGAGAGCATTTTCGCCATACCACCAATTCACCATTGACCATTAGC
GCCATTTTGCACCCGCAC-CCCACCCCCCCAACATGTAAATTTTCCGCCCCCGAGATACAGCTAGTCCCTTTAATCCTAA
GCTAAGCTAGTAGTACCTATT-CGAGTCAGAGTTTATCTAGTTGAGTTGAGTTGAGT----------CCTCATCGTCGCC
CGCCTGGTTGTCGCTTTTGAAACTGCGCAATCGCAGAGAGCTTTCGGTTATGTACATAGGCGAGGTC-----TCCCGTCC
GTTGTGTCCTGTATCTACATCTTGTGTAATGTGTG--------------------TGTGTCTTGTGTCTAGCAAGTGTCC
CCAGTCCATGGGTGTGTTCAGAGTCTAGCAAGTGTCCCAGTCCATGG-TGTGTTCAGAGTCTGTAAATACCGTCTGCCCT
GCATTCAGATGCATAATTAAGAAACTATTATATTATTATATTAAATCCTC-TTTGTTCCTGTGGTATTATCATAGCATCT
ATCTGTGAATTTTGATGTTGACATTCAGCTGTCATCATATAGTTTTCTTTACACAGTTCTTAGGCAGCATCAGCCGCCCT
GGTTCATTTT--GTGTTTGCAGCCTGTGGTGGGGCTTTTGTG--TGCACACTTCTTGGCTCGATGTAATTTTCACGGACC
CTTATTTTTAGATGAACTTGGTCCAATCTGTATGCACAATACTGCTGTAACATGAATTGTACCTTGTCTGGCTTTGGTTA
ACCTCTTATTGTAGCAAATGAGGTGTTGTGGGCCAAAAGATGGACAATCTTGTG-TTGCCCTTGAATTGTACTTTGTCTG
GCCTTGTTAGTATCCTTTTGAAATCAAAGTGTTGTTGGCCAAGAGACTATCAATTCTTGTTGCCCTTTGG-----AGGGT
GTTTGTTGCAAAGCTGATGCTGAT--------------GTGTAGTGAAATGAAACTTTAT--------------------
ATATGTATATGGAGTGTTGTTTTGTTTGGTCCCAAGCAAGG--GTGAGATGAGATGAAGAATTCTTGTTGTCTTTCCTTT
GGA
>chr1D_591
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------TCCCCGCTCCGCCGATTTCTGGCGCCAGCGGGCGGGGGCGGATCTGAGGG
TTCCCCTCCTGGATTTCGCAGGAATCCCACCTAACG---CCCCCGCACCAACAGCAGATCCGCTCACGCTTATTAAAAAT
G---------AATTAAAATCCCACTTTCCCCACCACCGCCACCATGTGCAAGATTTCCTCCTCCTCC-ATGTATGTTGAC
CAAGAAAATAATTTTATCCGCAGTGCAAGAATCCGCGTCTTATTTTATTTTATGCACGCACGCATGCATGATTTCACCTG
CGGATCAGCTACTCCTCTACACGCAGCAGAATCTACCGCTGCCAACAACAGACAAATTTCTTGTGTCTTGCTCAACCACC
TTGTAACCATCTTGTCTGTTTCTTCTTCTTGCAGTTGCAGGAGGCTGAACGTCGCAAGGAGGCAGGCATGGAGCACTACA
CCATGAGGCTCAGCGCGGGCGGAGGGGCCACGCCCACCCAGCAGCAGCAGC---------TCTGCCCCTGGGGGGAGCCC
C------TCATGGCGGTGGCGCCCGACCGAAGGTCGAGGTTCTGGCAGATGGACGTGGCCGTGGCGGCGCAGCCGGCCCG
CATCGAGGTCATATGCCCGCTGCCGCGCCGCCCCGCCCGCCCTCCCCACCCCGTCGAGCCCTTCGGCAGGGCCACCTCCA
GGCCTATCAACGGGTGGGTGTGGTAACTC--------------TCATCATCATCATCCAGTTGCTTGCATACATGCATAC
ATACTTGTTGTGTGTTTAGTTTATTTTGCTCATATGGTTGGTGATGTTGATGGCACGATACCTTAATAACTTGAATTGCT
GATTGATATGTGGTATTA--------------------------------------------------------------
------------------------------------------------------------------ACACCGGATATGAG
GTTGCATATTATGATCTTGTTAGAATCATGATTGTGTAA---GGCGTACACTCTATTAAA---CTCGTGCAGCAGCAAGT
AGGCATATGCATGGAAGGTAGTTAGAA--TTTTTTTGGAGGGAAA--AAACATGCTGTAGGGCGCTTATAACGGTCGACA
GGTTCTTACATGGGACATCACTAACTGTACGTTACCAGAAGCTAGGAAGACAGCGAAGCATGCACACGTTA---------
----------------------------------------GCCGACAACAAAGCGTGCACACGTGACGC--CAGAGTAGG
CAACAAAGTTGGTTTAGTGTT-GCATCTCGCCAGGACATCATGCCTCAATTGAACCAACAAAAACTAGTGCAGTAGCAAC
AGACTTGACATATAAGGCTATAACGGTCGATAGCTTCTTTCATGAGACAACACTAA------------------------
------------ATGCGTAACTAGAAGAAGCTAGCAGAGGCAGAGCATAAGCACGCAACGGCATAGTATGAAAACGGCAT
ACGGTTGTATGTCGCGACAAAGTAGGCAGGGGACATGATTTAGAGTTATATACCATTTGCACGGCACATTTCATAACCGT
CTCGGTACCGTTACAAAAGTCCAGTAGCGACAAATTAAGCGTGAAACACGTGTCTGACCTATGTTGCTTTGATTTTTGCA
GGACGCTACCAGTGTATAGAACAGACTCCGCCTCTGATATCCTTGATCTCATCCTCAGCAAGGTAACCTTGGTGCTTTAA
ATAGATAGCCAGTTTGTACTTTATTATATGCGGCACCATATCATTGATATCTGATGCCAGATTGTTTGTGTCTCTTGCCT
TTCAGAATGACCCTGATGTTGATACCGATTCCAACGGCCAGGCTGGCTTTTTCTGTGGTTCGCCTCCTGTCCGCACTAAC
AACCCCATTGTGAATGATCCGCAGTTTGGTAGGAACACCCCCTGTTTTTCTCCTCTAGGGAGCCCATTCAGCAAGATGCT
TGGTGGACGAGCTGAAGTAGGCTCTCCGTCTTGCGGGGCGAGTAGCAGCCCAAAAGTGAGGATCGAAGGCTTTGCCTGCG
GGAACAAAGAGAACCATTGTGCAGTCACCTTTGCCTGAGAGCATTTTCGCCATACCACCAATTCACCATTGACCATTAGC
GCCATTTTGCACCCCCCATCCCACCCCCCCAACATGTAAATTTTCCGCCCCCGAGATACAGCTAGTCCCTTTAATCCTAA
GCTAAGCTAGTAGTACCTATT-CGAGTCAGAGTTTATTTAGTCGAGTTGAGTTGAGTCGAGGTGAGTCCTCATCGTCGCC
CGCCTGGTTGTCGCTTTTGAAACTGCGCAATCGCAGAGAGCTTTCGGTTATGTACATAGGCGAGGTCTCCCGTCCCGTCC
ATTGTGTCCTGTATCTACATCTT-TGTAATGTGTGTGTGTGTGTGTGTGTGTGCTTGTGTCTTGTGTCTAGCAAGTGTCC
CCAGTCCATGGGTGTGTTCAGAGTCTAGCAAGTGTCCCAGTCCATGGGTGTGTTCAGAGTCTGTAAATACCGTCTGCCCT
GCATTCAGATGCATAATTAAGAAACTATTATATTATTATATTAAATCCTCTTTTGTTCCTGTGGTATTATCATAGCATCT
ATCTGTGAATTGTGATGTTGACATTCAGCTGTCATCATATAGTTT-CTTTACACAGTTCTTAGGCAGCGTCAGCCGCCCT
GGTTCA--TT--GTGTTTGCAGCCTGTGGTGGGGCTTTTGTG--TGCACACTTCTTGGCATGATGTAATTTTCACTGACC
C---TTTTTAGATGAACTTGGCCCAACCTGTGTGCACGATACTGCTGTAACATGAATTGTACCTTGTCTGGCTTTGGTTA
ACCTCTTACTGTAGCAAATGAGGTGTTGTTGGCCAAGAGATTGACAATCTTGTG-TTGCCCTTGAATTGTACTTTGTCTG
GCCTTGCTAGCATCTTTTTGAAATCAAAGTGTTGTTGGCCAAGAGACTATCAATTCTTGTTGCCCTTTGGGGAGGA---T
GTTTGTTGCAAAGCTGATGCTGAT--------------GTGTAGTGAAATGAAACTTTAC--------------------
ATACGTGTGTGGAGTGTAGTTTTGTTTGGCCCCAAGCAAGG--GTGAGATGAGATGAAGAATTCTTGTTGTCTTTCCTTT
GGA
>chr1B_625
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------GGATCTGAGGG
TTCCCCTCCTGGATTTCGCAGGAATCCCACCTAACG---CCCCCGCACGAACAGCAGATCCGCTCACACATTTATTTTTA
TTTTTTTCAACTTT-AAATCCAACTTTCCCCACCACCACCACCATGTGCAATATT---TCCTCCTCC-ATGTATGTTGAC
CAAGAAAATAATTTTATCCGCCGTGCGT---------------------------------GCGTGAATGATTTCACCTG
CGGATCAACTACTCTAAAT---GCAGCAGAATCTACGGCCGCCAACAACAGACAAATTTCTTATGTCT----------CT
CCGTTTC------------TTGTTC--------GTTTCAGGAGGCTGAACGTCACAAGGAGGCAGGCATGGAGCACTACA
CCATGAGGCTCAGCGCGGGGGGAGGGGCCACGCCCACCCAGCAGCAGCAGCAGCAGCAGCTCTGCCCCTGGGGGGAGCAG
TCCCTGATGGTGGCGGCGGCGCCCGACCGGAGGTCGAGGTTCTGGCAGATGGACGTGGCCGTGGCGGCCCAGCCGGCCCG
CATCGAGGTCATATGCCCGCTGCCGCGCCGCCCAGCCCGCCCTCCCTACCCCGTCGAGCCCTTCGGCAGGGCCACCTCCA
GGCCTAACAACGGGTGGGCGTGCTAACTCTCTCATCATCATCATCATCATCATCATCCTGTTGCTTGCATACATA-----
----CTGTTGTGTGTTTAGTTTATTTT-CTCATACGGTTGATGATGTTGATGGCATGATACCT---TAACTTGAATTGCT
GATTGATATGTGGTATTATCATCATCATCGTCCACTTGCTTGCATACATGCGTACTTGTTGTCTGTTTAGTTTATTTTGC
ACATATGGTTGATGATGTTGACAGCGTGGGTCCTTAACTTGAATCGCTGATTCATCTATGGTATTAACATCGGATACGAG
CTTGCG---TATGATCTTGTTAGAAGCATGATTGTGTAA---GACGTCTGCTCTATTAGA---CTTGTGCACCAGCAAGT
AGGCATATGCATGCAAGGTAGCTAGAT--AATTTCTGGAGGGAAAAGAAACATGATGTAGGGTGCTTATAACGGTCGAGA
GATTGTTACATGGGACATCACTAACTATACGTTATCAGAAGTTAGGAAGACAGCGAAGCATGCACACGTTATCAGAAGTT
AGGAACACAGCGAAGCATGCACACGTTATCAGAAGCTGCCGCCGACAACAAAGCGTGCACACGTGAAGAGACAAAGTAGG
CAACAAAGTTGGTTTAGGGTT-GCATCTTGCCAGGACACCATGCCTCGATTGAACCAACAGAAATTAGTGCAGTAGCAAC
AGACTTGACATATAATGCTATAACGGTCGATAGCTTCTTTCATGAGACAACACTAAATGTGTAACTAGAAGAAGCTAGCA
GTGCAACACTAAATGTGTAACTAGAAGAAGCTAGCAGAGGCGGAGCATAAGCACGCAACGGCATAGTATGCAAACAGCAT
ACGGTTGTGTGTCGCGACAAAGTAGGCAGGTGACATAATTTAGAGTTAT--ACCTTTTGCACGTCGCATTTCATAACCGT
CCTGGTACCGTTACAAAAGTTCAGTAGCGACAAATTAAGCGTGAAACACGTGTCTGACGTATGTTGCTTTGATTTTTGCA
GGACGTTACCAGTGTATAGAACAGACTCCGCCTCTGATATCCTTGATCTCATCCTCAGCAAGGTAACCTTGGTGCTTTAA
ATCGCCAGTTCCTGTTTATCATAATACA----GCACCATATCCTTGATGTCTGATGCCAGATTGTTTGTGTCTCTTGCCT
TTCAGAATGACCCTGATGTTGATACCGATTCCAACGGCCAGGTGGGATTTTTCTGTGGCTCGCCCCCCGTCCGCACTAAC
AACCCCATTGTGAATGATCCGCAGTTTGGTAGGAATACCCCCTGTTTTTCTCCTCTAGGGAGCCCATTCAGCAAGATGCT
TGGTGGAAGAGCTGAAGTAGGCTCTCCGTCTTGCGGGGCGAGTAGCAGCCCGAAAGTGAGGATCGAAGGCTTTGCCTGCG
GGAACAAAGAGAACCATTGTGCAGTCACCTTTGCCTGAGAGCATTTTCGCCATACCATCAATTCACCATTGACCATTAGC
GCCATTTTGCAACCCCCATCCCACCCCC-CAACATGTAAATTTTCCGCCCCCGAGATACAGCTAGTCCCTTTAATCCTAA
GCA-----AGTAGTACCTGTTCCGAGTCAGAGTTTATTTAGTTGAGTTGAGTTGAGTCCTTGC----------CGTCGCC
AGTCTGGTTGTCGCTTTTGAAACTGCGCAATCGCAGAGAGCTTTCGGTTATGTACATAGGCGAGGTCT------CCGTCC
GTTGTGTCCTGTATCTACATCTTGTGTAATGTGTG--------------------TGTGCCTTGTGTCTAGCAAGTGTCC
CAGTCCCATGGGTGTGTTCAGAGTCTAGCAAGTGTCCCAGTCCATGGGTGTGTTCAGAGTCTGTAAATACCTTCTGTCCT
GCATTCAGATGCATAATTAAGAAACTATTATATTATTATATTAAATCCTC-TTTGTTCCTGTGGTATTATCATAGCATCT
ATCTGTGAATTGTGATGTTGACATTCAGCTGTCATCATAAAGTTT-CTTTACACAGTTCTTAGGCAGCATCAGCCGCCCT
GGTTCA--TTTTGTGTTTTCGGCCTGTGGTGGGGCTTTTTTGTGTGCACAGTTCTTGGCATGATGTAATTTTCACTGACC
C---TTTTTAGATGAACTTGGTCCAACCTGTGTGCACAATACTGCTGTAACATGAATTGTACCTTGTCTGGCTTTTGTTA
ACCTCTTGTTGTAGCAAATGAAGTGTTGTTGACCAAGAGATTGACAATCATGTGTTTGCCCTTGAATTGTACTTTGTCTG
GCCTTGCTAACATCTAGTTGAAGCTAAAGTGTTGTTGGCCAAGATTTTAGCAA-TCTTGTTGCCCTTTGG-----A---T
GTTTATTGTAAAGCTGATGCTGATGCTGCTCTAAGTTGGTGTAGTGAAATGAAACTTTATATATGTATATATATGTATAT
ATATGTATATGGAGTTTTGTTTTGTTTGGTCCCAACCAAAAGAGTGAGATGAGATGAAGAATTCTTGTTGTCTTTCCTTT
GGA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------S------------------------
---------S-------S--S---------------SSS--------------------------------S---SS---
SSSS--SSS----------S--------------------------------------------SSSS---S--------
-----------------------S------------S------------------------------S------------
-------------S-------------SS-------------------------------S--S------S-----S---
---------------------------------------------S----------------------------------
-------------------------------------------------------------------------S------
-------------S---------S--------------------------------------------S-----------
---------------------------S-----S-----S-----S----------------------------------
--------------------------------------------------------------------------------
---------------------S----------------------------------------------------------
------------------S-S-SS---S----------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------SSS----------------SSSSS-----------------
-------S-----------------S-SS---------------------------------------------------
----S-------------------------S------------------S---------------------------SS-
------------------------------------------S----S------------SSSS--S-------------
---------------------S---------S--S-----------------------------------S---------
--------------------------------------------------------------------------------
----------------S------------------------------------S--------------------------
-------------S------------------------------------------------------------------
--S--------------------------------S-----S--------------------------------------
----------S---------------------------------------------------------------------
--------------------------------------S----------------S-S-----------S----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------S-----------------S----------------
--------------------------------------------------------------------------------
--------------S-SS--------------------------------------------------------------
-------------------------------------S------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------S---------------------------------S----------------------------------
------SS---------------------------------------------------SS--------------S----
-SSS----------------------S----S------------------------------------------------
-----------------------------S------S----S--------------------------------------
------S---S---S-------------------------------------------------------------SSS-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---
>forward_467
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------TCCATGCCGCTCTTGGATTT-------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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---
>reverse_1463
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------AGTCAGCTACGAGGTTGCAT--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---
>forward_572
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------GCGTGGAT
TTTTCCTGTCGG--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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---
>reverse_2174
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------CCGACAAAGTAGGCAGGGG------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---
>forward_576
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------GGAT
TTTTCCTGTCGGCCCT----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---
>reverse_2686
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------TAGCCCGAAAGTGAGGATTGA--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---
>forward_578
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AT
TTTTCCTGTCGGCCCTCC--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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---
>reverse_2918
--------------------------------------------------------------------------------
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-------------------------------------CTAGTTGAGTTGAGTTGAGTCCTCA------------------
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---
