>input_sequence_31233
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-------------------------------------------------------ATGGCGTTCACGCCCTCCGCCGCCG
TCCACTGCGCCGCGAGGACATTCTCCCCCTCCGCGCCGCCCCGCGGGCCGGCGAAATCTGCCTCCTTTGTCAGCGTTCCG
GGGGGGCG------------GCGCCGGGTGGTGGCCGCGGCGCTGGGGGACATGGACATGCGCCCGGCCATCGACGAGAA
CCCCGAGGGCGTGCTGTCCGGCGAGTGGCCCGGCAACTTCTCCCTCGCCAGCTACGACGACCTCCGCCAGTACCTCGAGT
CCCAGATCGTCTCCACCGACAAGGTCCGTCCGTCGCTCGCTCGCCTTCTTGCCAGATGCGTTCTTCTCACCTTTTTTTTG
GCTGGATCTGATGGGTTTCTGGCGGTTCCGTCGCGACTGCATCGAATTGAATCTGGTTCGGTTGGTCTGCTGCAGATGAG
CCCCACGGCGAAGCTCGGGGAGGTGATGTCGCGCCCGGTGGAGGTGGCCACGCCGGACCAGAAGCTGGCCGAGATCGACG
CCCTCTTCGCCACCCAGTCCGGCCTGCCCGTCGTCGACGGCGAGGGCAGGTGCATCGGGGTCGTCTCCAAGAAGGACAAG
GCCAGGGCCTCCAATGGGGTGAGTCTGTGCTCTTCAACCAATTGTATCTCGAACCATCATTTGTTAGAATATATGTCTAA
TCTGACAGAAGGCATGGATTGGGAATTGTTCCTGTCTTGTTTGATTTGTCTGAACATGGATTTCTGTCAAAGTCAAATTC
AGTTGTATGCTCCACCCACTGTTAGATTTACAGTACCACTAGCTGCACTTTCAGTTCATACTGAATGCTGAAGCACAAAA
TATAATCAAATTTAGGCAAACAATAACATGTTGAGGTCCCCTGAGGTTGGTACCTGAATATTCAGGGATTGGACTAG-AT
GGCATGAACTTCAAAGAATAACCTCGAATGCACAGAACATTTGGGGGCGGAAAGAAAATGGTGCCTGCTGAAGCACAAAT
TGTATAACTAAAAGAATGTAACCATTAACATGTTCAAGTCCTGTAAGGTGGTACCACAACATTTAGGGGTTGAATTAGAT
GGTGTGAACTTTCAAAGATAACCTCAAGTGGGTAAAAACATCTACCCTGAATTTTGCATCGAACATGCTGAATATTACTG
ATGTCCATTGGGCAGCAGTTACCTATATATGAACCAGCCTGCAAGTGAGGAATAACAAAAGTTTAAC--CCCATAGAAAA
TTTTGTCTCGATTGTT---TTTACAGGTTAAGAAAATAAATATCAGTTAACTAGTAAAATATCGAGATGCAAATTGAGTA
TGTATGAACTGATCTTTGACAGTTAGTTTTTAACACATTATTGTATTCCAGGACCTATTTAATTGTAGTCTAAATCATCA
CTAAACGGTGACATGTGTGTTAGAAACATCCCTAAATAAAGGCCGCTGCTTCTAAGA-CTCTCGCCTTAC----------
-------------------------------------------------------TTCTAATAATCTTTGGTTTGGCTTT
GATATGACCT---CATGTGCACTAAACTATACTAGAGAATAATGTGGGATTTTTTTTTGT--AAGTTTCTGAGATTCAGT
CTATAAGCATTT-TTGGTGACGTTGATCCATCCTTGCCTGTTCTTATGATGCAGTTGGACTCAACCATTGGAGAAGTCAT
GTCCTCTCCTGCTGTAACTCTGACTCTAGAGAAGACTGTCTTGGGTAACTTTTGCTTCCC-TCTACACTACAGCCCTACA
GCTCTACAACATAATAGCTACTGTAATAAAGAAATGTAATGTATTTTCAGTAAGATGTGCTAATGTGTTTTTTTTTAAAC
TTGTTTC--ATGAGCAGAAGCTGCTGCACTAATGCTCAAGCACAAAGTTCACAGGATACCAGTTGTGAATGAACAACAGC
AAGTGATCGGTAAGAGTTGGCAAATCCCTTTGATTGCCATTTCTGAAAAATAATAATTAGATGCAGCAATTTACTTAATA
TGGTTAC----------CATAAATGCCACTCGATGCAGTGTAGTT---TAAAAAGAAAAGTTTGCCGCTATGTAGAACCA
TTGGTTTTAGCTGTTTGCATTTGGATAGTAGGGTAAAGATGTCGGGTACCTGCTGGTTAGATGGTAACTGAGTGATGCTC
TTATGAAATAATGCATTTTAGTTTTCTTTCTACCTTATCAAGACTCGTATTTCTTGGACATTCTACTACCAGTATAATCT
ACATTCCCAGTTATCTCCACTGAAAACAAGCCGAAAGCAGCCACACATTTCTCAGTTTTAGTCTTCAAGCTTTTCACTGT
AACTGTAGGCACCGTTTCTCAGTTCCCCGGAACCTAGTTTGAGCAACCAATGCATCAAACCGCAATGACTACAGAAGACT
GTTCACGCAACTGCATACACATTTACTTACCTAATGAGAACAAGAAGCATTGTCTTCACTAAACTGCAGAGAACCCTTCC
ATTATAACTGCTGGATAAAACATTATTGTTCTTCCTAGCGTGAACAAGAACACCGCACACATACATGACCATTTATTTCC
GACAAGCAGGTATCGTAACGCGGACGGACGTCTTCCAGGCCTTGGAGGCCAGCAAGGCGTAA------------------
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>chr2A_1_TraesCS2A01G014300
CATAACCTAGACACGGAGGCAAACCAAGAAAAAAACACACGAGTTGAGTGGTAGCCACCACACCGACCAACTCCAGCACT
ATCAAGATCTCGCGGGCCAAACATGACCCGCGAGAACACCGCAACTCCTCGCTCTGTCGCCCAACCGCTGCGGAGACCGT
TTTGATGGACACATCAGTTAGCTCTTCCGATGCTTCTCGCAGAAAAAAAATCTCTTGTTACAACGCACAGACATATGTGC
TAGTATAGACAAAACTATGTAGACACAAGGACGAGAGGCGGCCGGCACATCACACATCGGTGCGGGAACACACAAAGCAG
GCAACGATCAACAAACCTGCACGAATATTATAAAACCCGATAGTGTTATGGAAGACTTATTAGATGTGACGTCGTTAAAT
TCCATCTAGGCGTGAACTAGCAAATCCGTTAGTTAGTCATAACGATAAGTACATTACTACCTTCGTCCCGGTGTATAAGT
CATTCGCGTAGTTCTAGGTCGATAATTTAGCTATTTAAATATGTATTATATGTGACAAAAAATATATATTTAGAAACTAC
ATCCGCGTGGAAATATATATTTAGAGTACTTTTCATGACATATAACACATATTTAATTTCTCAAATCGATGACCTAGAAC
TACGCGGATGACTTATACACCCGGACGGAGGTAGTACATTTTTTTAGAGGAAAGTCGTTCAGCAAACACCCCCTTGAGTC
AATCAAATGTTGTGCGTGTGAAAGTCAATCAAATGTTATAAAAAGTTTGATTTTGGAGGAGGTTTGAGGCGTGGGTACGC
GACGGTGACACGTCACGTGGCCACCGTCCGTCCGCCTGCAGGTGGGCCCCCCTCCT-CCACGTCCTTCCAGAAACATCCA
CACCACTCGCCACTGCCCACCCCACTCCACTCCACCCCACCCGTGATACACGCGCGCGCGAGAGCGAGACCCATCGCCAC
AGCACTCGCTCCGGACCGCAATCCCGTCGCC--------------GTCGACGTCAATGGCGTTCACGCCCTCCGCCGCCG
TCCACTGCGCCGCGAGGACATTCTCCCCCTCCGCGCCGCCCCGCGGGCCGGCGAAATCTGCCTCCTTTGTCAGCGTTCCG
GGGGGGCG------------GCGCCGGGTGGTGGCCGCGGCGCTGGGGGACATGGACATGCGCCCGGCCATCGACGAGAA
CCCCGAGGGCGTGCTGTCCGGCGAGTGGCCCGGCAACTTCTCCCTCGCCAGCTACGACGACCTCCGCCAGTACCTCGAGT
CCCAGATCGTCTCCACCGACAAGGTCCGTCCGTCGCTCGCTCGCCTTCTTGCCAGATGCGTTCTTCTCACCTTTTTTTTG
GCTGGATCTGATGGGTTTCTGGCGGTTCCGTCGCGACTGCATCGAATTGAATCTGGTTCGGTTGGTCTGCTGCAGATGAG
CCCCACGGCGAAGCTCGGGGAGGTGATGTCGCGCCCGGTGGAGGTGGCCACGCCGGACCAGAAGCTGGCCGAGATCGACG
CCCTCTTCGCCACCCAGTCCGGCCTGCCCGTCGTCGACGGCGAGGGCAGGTGCATCGGGGTCGTCTCCAAGAAGGACAAG
GCCAGGGCCTCCAATGGGGTGAGTCTGTGCTCTTCAACCAATTGTATCTCGAACCATCATTTGTTAGAATATATGTCTAA
TCTGACAGAAGGCATGGATTGGGAATTGTTCCTGTCTTGTTTGATTTGTCTGAACATGGATTTCTGTCAAAGTCAAATTC
AGTTGTATGCTCCACCCACTGTTAGATTTACAGTACCACTAGCTGCACTTTCAGTTCATACTGAATGCTGAAGCACAAAA
TATAATCAAATTTAGGCAAACAATAACATGTTGAGGTCCCCTGAGGTTGGTACCTGAATATTCAGGGATTGGACTAG-AT
GGCATGAACTTCAAAGAATAACCTCGAATGCACAGAACATTTGGGGGCGGAAAGAAAATGGTGCCTGCTGAAGCACAAAT
TGTATAACTAAAAGAATGTAACCATTAACATGTTCAAGTCCTGTAAGGTGGTACCACAACATTTAGGGGTTGAATTAGAT
GGTGTGAACTTTCAAAGATAACCTCAAGTGGGTAAAAACATCTACCCTGAATTTTGCATCGAACATGCTGAATATTACTG
ATGTCCATTGGGCAGCAGTTACCTATATATGAACCAGCCTGCAAGTGAGGAATAACAAAAGTTTAAC--CCCATAGAAAA
TTTTGTCTCGATTGTT---TTTACAGGTTAAGAAAATAAATATCAGTTAACTAGTAAAATATCGAGATGCAAATTGAGTA
TGTATGAACTGATCTTTGACAGTTAGTTTTTAACACATTATTGTATTCCAGGACCTATTTAATTGTAGTCTAAATCATCA
CTAAACGGTGACATGTGTGTTAGAAACATCCCTAAATAAAGGCCGCTGCTTCTAAGA-CTCTCGCCTTAC----------
-------------------------------------------------------TTCTAATAATCTTTGGTTTGGCTTT
GATATGACCT---CATGTGCACTAAACTATACTAGAGAATAATGTGGGATTTTTTTTTGT--AAGTTTCTGAGATTCAGT
CTATAAGCATTT-TTGGTGACGTTGATCCATCCTTGCCTGTTCTTATGATGCAGTTGGACTCAACCATTGGAGAAGTCAT
GTCCTCTCCTGCTGTAACTCTGACTCTAGAGAAGACTGTCTTGGGTAACTTTTGCTTCCC-TCTACACTACAGCCCTACA
GCTCTACAACATAATAGCTACTGTAATAAAGAAATGTAATGTATTTTCAGTAAGATGTGCTAATGTGTTTTTTTTTAAAC
TTGTTTC--ATGAGCAGAAGCTGCTGCACTAATGCTCAAGCACAAAGTTCACAGGATACCAGTTGTGAATGAACAACAGC
AAGTGATCGGTAAGAGTTGGCAAATCCCTTTGATTGCCATTTCTGAAAAATAATAATTAGATGCAGCAATTTACTTAATA
TGGTTAC----------CATAAATGCCACTCGATGCAGTGTAGTT---TAAAAAGAAAAGTTTGCCGCTATGTAGAACCA
TTGGTTTTAGCTGTTTGCATTTGGATAGTAGGGTAAAGATGTCGGGTACCTGCTGGTTAGATGGTAACTGAGTGATGCTC
TTATGAAATAATGCATTTTAGTTTTCTTTCTACCTTATCAAGACTCGTATTTCTTGGACATTCTACTACCAGTATAATCT
ACATTCCCAGTTATCTCCACTGAAAACAAGCCGAAAGCAGCCACACATTTCTCAGTTTTAGTCTTCAAGCTTTTCACTGT
AACTGTAGGCACCGTTTCTCAGTTCCCCGGAACCTAGTTTGAGCAACCAATGCATCAAACCGCAATGACTACAGAAGACT
GTTCACGCAACTGCATACACATTTACTTACCTAATGAGAACAAGAAGCATTGTCTTCACTAAACTGCAGAGAACCCTTCC
ATTATAACTGCTGGATAAAACATTATTGTTCTTCCTAGCGTGAACAAGAACACCGCACACATACATGACCATTTATTTCC
GACAAGCAGGTATCGTAACGCGGACGGACGTCTTCCAGGCCTTGGAGGCCAGCAAGGCGTAAGAAGATCCTGCATCCTCC
ATCCCCACTGTACATTTCGACGGCAGCAGCGTATTTAGCCTACGGTAATGCTGCTCATGTACAGTAATAATCCTAGCGGT
GTGGTATGTTGTACATGTGGGGGCCTTCCTCTACCGGGGCCTCGGCGTGTTCTTCGTGTTTCTATATGAGCTGTGTCCTG
TGTTTCTGGATCTGTGTGACCTTGAATAGTTGTTGTGACATGGGTGCTTGCTCTCTTTTGCGATGAGTTGTCTTTG----
-----------------CCATCTCTCTTTCATGTAGCAGGCGCTGATGTACATTTGAACTTTGATTTTTTTTAGCATGTA
TATGATTTTGTTTGAGAAA-ATATGGGGAGGTTGTCCATGTGGAAACAATATATTTTTCTGCCTCAGTCATACAATATCC
ATGTGCTTTGTCAGAAATTTTAGGTTTAAATTCGAGCTTGAGAACCAGAAAAGACATAGTAGTACGAAATTACGATAGTA
TCAAATCGAGCTTGAGATTTAAATACAGCTTTATTTGTTGCAGCTCACCAGAGTGTATCTACTCACTGAGCCGTTCCAGC
TGGGCTCACGGGTTGGGCCTTGCCTCCCTCCTGGGCCGTTCCAGCTGGGCTGGGCCTTCAGTACCACGGGATGACCTGGT
GGATCCCGTAACAAAAAGATGTGTGGGGCCTTTCGGCCGGGCTCGGGCTGGCAAATCTGTTGTTGGGCTTTGACAAGCCC
GGCCTGAAACCAGGCCTGGCCTGATGAATGCCAGGTT-------------------------------------------
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TAGTGGGGAGGGGGAGAAAGTGAGAACAACTAGTTGAAGAGCGCTCTTTCCGGAGCCTCGCAGCGATCACTTGCGGGTGG
GCCGGCTCTCCCTTCGAATTTT-----------ATTTTTATTTTTATTTTTTCAC-------------------------
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----------ACATGTTTTTGGGTTTTAAACGGTTTTGTTCTGAATTTTTTGTCCTTTTGATTTTCCACTGGTCTTCCTT
AGCTTTTGGATCAAACAAAAATTTTGAAAAGATTTTTTTAGAAAACATGTTTT
>chr2B_831
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------------------------------TCGGCCTGCAGGTGGGCCCTGGATTTCCCACGTCCTTCCAGAAACATCCA
CACCACTCTCCACTG-----TCCACTCCACTCCAACCCACCCGTGATACACGCTGCCCGCCGGCCGAAACCATCGCTGCG
CCCCAG---TCCAGACCCCGATCCCATCACCGAATCTCGCGCACCGTCCACGTCCATGGCGTCCACGCCCTCCGCCGCCG
TCCACCGCGCCGCGAGGACCTTGTCCCCCTCCGCGCCGCGCCGCGGGCCGGCGAAATCTGCCGCCTTTGTCAGCGTTCCG
GGGGGACGGCCCCGGGGGCGGCGGCCGGTGCTGGCGGCGGCGCTGGGCGACATGGACATGCGCCCGGCCATCGACGAGAA
CCCCGAGGGCGTGCTCTCCGGCGAGTGGCCCGGCAACTTCTCCCTCGCCAGCTACGACGACCTCCGCCAGTACCTCGAGT
CCCAGATCGTGTCCACCGACAAGGTCCGTCCGTCGCTCGC---------------ATGCGTCTTTTTCCC--TTTCTGTG
GCTAGATCTGATGGTATTCCGGTGGTTCCGTCACGATTGCGTCGAATTGAATCTGGTTCGGTTGGTCTGCTGCAGATGAG
CCCCACGGCAAAGCTCGGGGAGGTGATGTCGCGCCCGGTGGAGGTGGCCACGCCGGACCAGAAGCTGGCCGAGATCGACG
CCCTCTTCGCCACCCAGTCCGGCCTGCCCGTCGTCGACGGCGAGGGCAGGTGCATCGGGGTCGTCTCCAAGAAGGACAAG
GCCAGGGCATCCAATGGGGTGAGTCGGTGCTCCTCAACCAATTCTATCTCGAATCATCAATTGTAGGCATAT--GTCTAA
TCTGAAAGA-----------------------------------------------------------------------
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>chr2D_895
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---------------CCCACTCCACTCCACCCCACCCCACCCGTGATACACGCGCGCGCGAGAGCGAGACCCATCGCCAC
AGCACTCCCTCCGGACCGCAATCCCGTCGCCGAATCTCACGCGCCGTCGACGTCCATGGCGTCCACGCCCTCCGCCGCCG
TCCACCGTGCCGCGAGGACCTTGTTCCATTCCTCGCCGCGCCGCGGGACGGCGAAATCTGCCGCCTTTGTCAGCGTTCCG
GGGGGACGGCCCCGGGGCCGGCGGCGGGTGGCGGCCGCGGCGTTGGGGGACATGGACATGCGCCCTGCCATCGACGAGAA
CCCGGAGGGCGTGCTCTCCGGCGAGTGGCCCGGCAACTTCTCCCTCGCCAGCTACGACGACCTCCGCCAGTACCTCGAGT
CCCAGATCGTCTCCACCGACAAGGTTTCACC-----------------------------------------T-TTTCTG
GCTAGATCTGATGGTTTTCCGGTGGATCCGTCGCGACTGCATCGAATTGAATCTGGTTGGGTTGGTCTGCTGCAGATGAG
CCCCACGGCGAAACTCGGGGAGGTGATGTCGCGCCCGGTGGAGGTGGCCACGCCGGACCAGAAGCTGGCCGAGATCGACG
CCCTCTTCGCCACCCAGTCCGGCCTGCCCGTGGTCGACGGCGAGGGCAGGTGCATCGGGGTCGTCTCCAAGAAGGACAAG
GCCAGGGCATCCAATGGGGTGAGTCAGTGCTCCTCAACCAATTGTATCTCGAATCATCAATTGTAGGAATAT--GTCTGA
TCTGAAATAAGGCATGGATGGGGAATTGTTCCTGTCTTGTTTGATTTGCC-GAACATGGATGTAT------GTCAAATTC
AGTTGTATGCTCCACCCACTG--------------CCACTATCTGAATCTTCAGTTCGTTTTCAATGTTGAAGCACAAAA
TCTAACCAAATTAAGATGAACAATAACATGTGGAAGTCCTCTGAGGTTCGTACCTGAATATTGAGGGATTAGATTGGAAT
GGCATGAGGTTCAAAGAATAACCTCGAATGCACAGAACATTTACGAGTTGAAAGAAAATGATGCATGCTCAAGCACAAAC
--TATAACTAAAGGAGTCTAACCAGTGCCATGTTCAGGTCCT-TAAGCTGGCACCCCATTACTCAGGGGTTGAATTAGAT
GGCACAAACTTCGATTAATAACCTAAGCGCAAAAATGGCT--TACCCTGAATTTCGCATCTAACATGCTGAATATTACAG
TCATCCAATGGCAAGCAGTTACCTATATATGGATCAGAATGCTAGTGAGGGACAATTAATAGTTCATTGCCCATAGAAAA
TTGTGCCTCCATTTTT---TTACAGGGTAAAGAAAATAAATACAACCTAACCAGTAAAATATGGATATACAAATTCAG--
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-----------TATGTGTGTTAGGAACATCCCTGAACGAAGGCCCCTACTCAAAGGCTCTCTCACCTTGCTTGGCACATA
GACCATTCTACTGTGGTGTCTCTACAATGGTTCTATTTCCAGGTCGAACAAATTTTTCTAATAATCTTCGGTTTGGCTT-
GATATGACCAGGACATGTGCACAAAACTGTACTGGAGAATGATTTTAGG-TTTTCTTTTGTAAAGT---TGAGATTCAGT
CTATAAGGGTTT-CTGATGATACTGATCCGT-----CCTGCTCTTATAATGCAGTTGGACTCAACCATTGGAGAAGTCAT
GTCCTCACCTGCTGTAACTCTGACTCTGGAGAAGACCGTCTTGGGTAAGTTTTGCTTCCCCTCTGCCCTACAG-CCTACT
GCTCTACAGCATATGGTTAATAGAAACGCTGTGTGTTTCTG--------GTAAGATGTGCTAATGTGTTTCTTCTATGTA
ACTGCGTGTATGAGCAGAAGCTGCTGCATTGATGCTCAAGCATAAAGTTCACAGGATACCAGTTGTGAATGAACAACAGC
AAGTGATCGGTAAGAATTTGAAAATCCCTTCGATTGCCATTTCTGAAAAATAA---GTAGATGTAGTCATTTACTTGGTA
TAGTTCCAT-----------------------------------------------------------------------
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>chr3A_1162
CATCA---------------------------------------------------------------------------
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------------------------------------------------------------------------GACGAGAA
CCCCGAGGGCGTGCTGTCCGGCGAGTGGCCCGACAACTTCTCCCTCGCCAGCTACGACGACCTCCGCCAGTACCTCGAGT
CCCAGATCGTCTCCACCGACAAGGTCCGTCCGTCGCTCGCTCGCCTTCTTGCCAGATGCGTTCTTTTCACCTT-TTTTTG
GCTGGATCTAATGGGTTTCTGGCAGTTCCGTCGCGACTGCATCGAATTGAATCTGGTTCGGTTGGTCTGCTGCAGATGAG
CCCCACGGCGAAGCTCGGGGAGGTGATGTCGCGCCCGGTGGAGGTGGCCACGCCGGACCAGAAGCTGGCCGAGATCGACG
CCCTCTTCGTCACCCAGTCCGGCCTGCCCGTCGTCGATGGCGAGGGCAGGTGCATCGGGGTCGTCTCCAAGAAGGACAAG
GCCAGGGCCTCCAATGGGGTGAGTCTGTGCTCTTCAACCAATTGTATCTCGAACCATCATTTGTTAGAATATATGTCTAA
TCTGACATAAGGCATGGATTGGGAATTGTTCCTGTCTTGTTTGATTTGTCTGAACATGGATTTATGTCAAAGTCAAATTC
AGTTGTATGCTCCACCCACTGTTAGATTTACAGTACCACTAGCTGCACTTTCAGTTCATACTGAATGCTGAAGCACAAAA
TATAATCAAATTTAGGCAAACAATAACATGTTGAGGTCCCCTGAGGTTGGTACCTGAATATTCAGGGATTGGACTAG-AT
GGCATGCACTTCAAAGAATAACCTCGAATGCACAGAACATTTGGGGGCGGAAAGAAAATGGTGCCTGCTGAAGCACAAAT
TGTATAACTAAAAGAATTTAACCATTAACATGTTCAAGTCCTGTAAGGTGGTACCACAACATTTAGGGGTTGAATTAGAT
GGTGTGAACTTTCAAAGATAACCTCAAGTGCGTAAAAACATCTACCCTGAATTTTGCATCGAACATGCTGAATATTACTG
ATGTCCATTGGGGAGCAGTTACCTATATATGAACCAGCCTGCAAGTGAGGAATAACAAAAGTTTAAC--CCCATAGAAAA
TTTTGTCTCGATTGTT---TTTACAGGTTAAGAAAATAAATATCAGTTAACTAGTTAAATATCGAGATGCAAATTGAGTA
TGTATGAACTGATCTTCGACGGTTAGTTTTTAACACATTATTGTATTCCAGGACCTATTTAATTGTAGTCTAAATCATCA
CTAAACGGTGACATGTGTGTTAGAAACATCCCTA-ATAAAGGCCGCTGCTTCTAAGA-CTCTCGCCTTAC----------
-------------------------------------------------------TTCTAATAATCTTTGGTTTGGCTTT
GATATGACCT---CATGTGCACTAAACTATACTAGAGAATAATGTGAGA-TTTTTTTTGT--AAGTTTCTGAGATTCAGT
CTATAAGCATTTTTTGGTGACGTTGATCCATCCTTGCCTGTTCTTATGATGCAGTTGGACTAAACCATTGGAGAAGTCAT
GTCCTCTCCTGCTGTAACTCTGACTCTAGAGAAGACTGTCTTGGGTAACTTTTGCTTCCC-TCTACACTACAGCCCTACA
GCTCTACAACATAATAGCTACTGTAATAAAGAAATGTAATGTATTTTCAGTAAGATGTGCTAATGTGTTTTTTTAAG--C
TTGTTTC--ATGAGAAGAAGCTGCTGCACTAATGCTCAAGCACAAAGTTCACAGGATACCAGTTGTGAATGAACAACAGC
AAGTGATCGGTAAGAGTTGGCAAATCCCTTTGATTGCCATTTCTGAAAAATAATAATTAGATGCAGCAATTTACTTAATA
TGATTAC----------CATAAATGCCACTCGATGCAGTGTAGTT---TAAAAAGAAAAGTTTGCCGCTATGTAGAACCA
TTGGTTTTAGCTGTTTGCATTTGGATAGTAGGGTAAAGATGTCGGGTACCTGCTGGTTAGATGGTAACTGAGTGATGCTC
TTATGAAATAATGCATTTTAGTTTTCTTTCTACCTTATCAAGACTTGTATTTCTTGGACATTCTACTACTAGTATAATCT
ACATTCCCAGTTATCT----------------------------------------------------------------
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>chr2B_1763
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-----------------------------ACAGTATCAGTAGCTGAATTTTCAGGTTATATGGAATGCTGAATCACAAAA
TATAACCAAATTAAGGCAAACAATAACACGATGAATTCCCCTGAGGGTCGTATCTGAATATTCAGGGATTAGATTAGAAT
GTCATGAACTTCAAAGAATAACCTCGAATGCTCATAACGTTTAGGGGTGGAAAGAAAATGGTGCCTGCTGAAGCGCAACC
--TGTAACTAAAAGAATCTGACCAGTAACATGCTCAAGTCCCA-AATGTGGCACCCCAATATTCAGGGGTTGAATTAGAT
GGTATAAACTTTGATTAATAACCTCAAGTGCAGAG-AACATCTACCCTGAATTTTGCATCTAACATGCTGAATATTACTG
ATATCAATTTTCCAGCAGTTACCTATATATCAATCAGCCTGCAAGTGAGGGACAACAG-TAGTTCATTGCCCATAGAAAA
TTGTATCTCAAATTTTCTTTTACAGGGTAAAGAAAATAAATACAACCTAAGCAGTAAAATTTTGAGATACTTCTGTTTTC
TA-----------------------------AATACATTATTTTAGTCCAGGACCTATTTAACTTTAGGC----------
-------GTGATATGTGTGTTAGAAACATCCCTGAATAAAGGCCCCTACTCA-AAGC-CTCTCACCTTGCTTAGTGCATA
GACCATTCTACTGTGGTGT-TCTAGCATGGTCCTATTTCCATGTCGAATAAATTTTG-TAATAATCTTCAGTTTGGCTC-
GATATGACCAGGACATGTGCACACAATTGTACTAGAGAATAATGTTGGG-TTTTCTTTTGTAAAGTTCCTGAGATTCAGT
CTATAAGGGTTT-CTGATGATGCTGATCCGT-----CCTGCTCTTATAATGCAGTTGGACTCAACTATTGGAGAAGTCAT
GTCCTCACCTGCTGTAACTCTGACTCTGGAGAAGACCGTCTTGGGTAACTTTTGCTTCCTCTCTACCCTACAG-CCTACT
GCTCTACAGCATATAGTTAATAGAAACACAAAGTGCTTTTG--------GTAAGATGTGCTAATGTGTTTCTTTTCTGTA
ACTGCGTGTATGAGCAGAAGCTGCTGCATTGATGCTCAAGCATAAAGTTCACAGGATACCAGTTGTGAATGAACAGCAGC
AAGTGATCGGTAAGAATTTAAAAATCCCTTCGGTTGCCATTTCTGAAAAAT--TAAGTAGATGTAGCCATTTACTTGGTA
TAGTTCATCTAGGTTGTCATAAATGCTACGGGATGCAATGTAATTTTGTAAAAAAAAGGGTTTGCCGCCATGTAGAACCA
TTGCTAGTAGCTGTTTGCATTACGATACTCGGGTAAAGA-----------------------------------------
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>chr2D_2991
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-----------------------------------------------------------------------GTAGAACCA
TTGGTTGTAGCTGTTTGCATTTGGATAGTAGGGTAAAGATGTTGGGTACCTGCTGGTTAGATGGTAACTGAGTGATGCTC
TTATGAAACAATGCATTTTAGTTTTCATTCTACCTTATTGATGCTCATATTTCCTAGACATTCTACTACCATTATAATCT
ACTTTCCCAGTGATGTCCACCGAAAAAACGCCATAAGC-GCCACACATTCATATCAAGTT----------TTTACACTGT
AACTTGAGGCACCGTTTCTTAGTTTCCCGGAACCTTGTTTGAGCAACAAATGCATCAAATCCCAATGACTGCAGAAGACT
GTTCATGCAACTGCATACACATTTACTTACCTAATGAGAACAAGAAGCATTG-CTTCACTAAACTGCAGAGAACCCTTCC
ATTATAACTGCTGGATAAAGC---ATTGTTTTTCCTAGCATGAACAAGAACACCGTACACATACATGACCATTTATTTCC
GACAAGCAGGTATTGTCACGCGGACGGACGTGTTCCAGGCCTTGGAGGCCAGCAAGGCATAAGAAGATCCTGCATCCTCC
ATCCCCACTGTACATTTCGACGGCAGCAGCGTATTTAGCCTACGGGAGTGCTGCTCATGTACAGTAATAATGCTAGCGGT
GTGGTATGTTGTACATGTGGAGGCCTTCCTACCGGGT--CCTCGGCGTGTGCTTTGTGTTTCTGTATGAGCTGTGTC---
-----CTGGATCTGTGTGATCTTGAATAGTTGT---GACATGGGTGCCTGCTCTCTTTTGCGATGACTTGTCTTTGCGTT
TGGAAGAAGCTGGTCTGCCATCTCTCTTTCATGTAGCAGGTGCTGATGTACATTTGAACTTTGATTG-TTTTAGCATGTA
TATGATTTTGTTTGAGAAACATATGGGGAGGTTGTCCATGTGGAAGCAATATATTTTTCTGCCTCAGTCATACAGTATCC
ATGTGCTTTGTCGGAAATTCCACTCCACTGAGCCCACTCTTCGCCTCGGACTCAA-------------------------
--------------------------------------------------------------------------------
---------GGGTTGGGCGTTGCCTCCCTCCTGGGCCGTTTCAGCTGGGCTCA-CCTTCAGTAGCACGCGATGACCTGGT
GGATCCCCTGGCAGAAAGATTTGTGGGGGTGGGGTTAGGGCTGGACCGAAAGCTCGTAGCTTGCGAGCTTAATGAACGCT
TGATAGTTTGGCTTATTAAGCTCGTGGCTCGCTTCTTAATGAATAGAGCCAATAATCGATTTCAGCTTGTTAAGCTTAAC
AAACAAGTTAACGAGTTTCATGAGTAGCTCGTTTGTAACAACAAAATACATATTTTCAGCTTACGTGACAAAGTTTCCGT
AGCACCTCAGCACATCTATTTAATCTAATCTACATGGAAGGCAACAAACTAGTGCATTACCTTCTGTAATCACCATCTTC
CTTCTTAAAAACCACATCTACACATTTATCTTGTAGACCGTAGCACGTTAGAATCTGTTAATGAGCGCTCACGAGTTTAA
CGAGCTTCAATCGAACCGATCCAAGTAGGGTTTTTTTCTCGTTAATCTTAACGAGCATGAGCAGCTCGTTAATGCACCCC
TAGCTGGGAGGGGGAGAAGGAGAATGGGGCAATCTTATTTGGCGCCCATTTACACCGTTTTTGCAAACCGGCGCCTAAAG
CAGCTCCCCACGCGTGGTAGTTGGGCTAGGCCCATTTTTCTTTTTTCTGTTTCACGCGATGCCCGGATTCGGACCCATGA
GCTCCTGTTAGATACCACGCTGAACTAACCATCCGACCGCCTCCACCTAACATGCTCGGGTACATCTTCTTCAGTCTTTT
TTTTTCCTCGGAACGATATTGTTCGGTTCTCTATTCTCTTTCATTTTTTTGCTACATTGAATGATTTTTTTTTCAAAATT
GAATGATCTTTCTTCCAAAATTGATGATTTTTTTTAAAAATCGATGAACTTTTTTGTCAAAATTGATGAACATTTTCAAA
ATGAATGAACCTTTTTCAAAATTGATGAAGCTATTTTCGAAAGATGATGTTTTTCAAAATTGAAGATTGTTTGTTTCAAA
ATCGATGAACTTTTTTAAACACCGATGAACTTTTTTTCAAAATTGATGAACTTTTTTTCAGAATTGATGAACCTTTTCAA
ATTGAATGACCTTTTTTCAAAATCGATGAACCTTTTTTCAAAAGTGATAATTTTTTTCCAAAATTGACGATTTTTTTTTT
CAAAATCGATGAATTGTTCTTTCAAAATCTATTAACTTTTTTCATTTTGTGATTTTTCTTCATAATTGATAAACTTGTTT
GGGGGATTTTAGGAAAAAAAAACTATTTGAGGGAGTGCGGTCGAGGGCGGTATTTTTTTTCAAGGAAGCGTGATCGGGAA
GCAAGAAAATAATGGGCCGGCCCATGAGGTGGGGTTCGTGGGCGGCAGCTACCTGTCCACGTGCTTAAGGCGTCGAATAA
GAGCTCCCGAGAGAACGTGCGTTTGTGGGATGTGCGACCAGTTTGTTTTTCGCGGATGGTGCATGGATCGTTCGAGGGTT
TTAACAGATGCGTGGACGTACCTATTTGATTGAGAATCGACGACTTATAGCGGTCGAACCACCACGACAACGACAAGTTG
TAGTACGAATGCGAGTATGGTTGGGACGTCTACTGAGAAGATAAGAAGAGCCGAGAAAGGATCAGCCTGGTGCGACTCAT
GGAAGCACTGAAGTTCTGTACATAGTACTAGTGTGGGCAATCTTCTTTTAGAGAAGTAGTGTGAAGGACTTTTTTCTTTC
TATAAAGTGTGGATAGGTATGTGAAACTTTGCTTACGTGAAAATATGAGCCTACATTGGTCCTTTTTAGTGCATGTGTTT
TAACTTATAACTAAACCAAATGACCATGGAACAAATACCTAACACAAAAACAGTTTTAATGAATATATGAAGTATATAAA
TGCTCTCTAACTTCACACACCAAATTCAAAATAAATCACTTACAACAAAAAATCAGTAAAATAAAATTAATATGTCAATC
TTAATCAGCAAAATGTTAGCAAATTTACCTATTCCTAAATGAAAACAATTAAACTATAAAAATAATTAAAGAAAAAATGT
AACAATGCAACATGATAAAAATGCCAGAAAAATTATGAAAAATATAATAATTTGAACAACACGACTGATCATGAAAAATA
CAATTGGTACGTCATGTGTAATTTCCATTTTTTCTTTGAACAATCCAAGTATATGGTCATATTGTTAGAAATATAAAATT
CTATTCCGCGCATTGAGCAGCCCACGTTGCTAGTAAATTAAATAAAAGTACATTTTGTTTAGTAAGCCGTGTGGACAAGA
AACATAGCGAAACCAGCTGGACACAAATTGAAATCGGACACGCGCGCAAAACGGCGAGGAACGCATGCATATGATCATTT
CATAACAGAGTTAGGTGCATATGATGCATCTAGGTCAGCGAGGTGCACATGGATAATAAACAATTGAAGATCTTTTTTCT
TTGTTGTGGAAGAGGATGGGTGTTGACTTTTGGTTATGTAGAGTCCGTACAGTGGGAAGAAACAGACTTGAGCAGAGAAT
GGCATCAAATTCGCATACTGCAGAGTCGGTAGCTGTGGAGCCGTGACTGTGCATCCTGCAGTCAGCTCTTCTACAATATC
CAACATTAATATGAGACTCCAAAATTAATCTCATGAAGTACCACCCGATGCTCGCGGCTACATCAACAATGGCACAAAGT
GCTATCACCTCGCTTGAGCAACTCATCGGCTTCCTCTACAGTCCACGCGTCCGCCGCCGCTCCAATTCCTCCTGCCATCG
CCGCTGCCACCCTCAAGAGGAAGCTGCAAGGGAGCCATATCGTTCAAAGCGGCGCAGCCGGCGCGGCACCACCAAGCGTC
GCCCCTGCTCCAGTTCCATGCGCCATGCCCAAGAGGAAGAACACCACCTCGACCAGCCCCGCCGGTGCGCGGGCGAAGCC
TCCGAGGAAGATGGCGATCGCGTCAAGGGGTCGGGCTCCTCCTCCGCCTCCGGCCGACGCCGGCATCCACATTGAGGGCG
AAGCCGCCGGCCACGCCTACAATGTGTTCGATGAAATGGCCTGGAGGTAGAAACATTTTCTTTTGCTTGCTTTGCTCTGG
TCATTTATGATTCGGCCGTTTGGAATACTTGCTTGAGCTTTGGCCATTGACTTTTGTAGCCAAAATGTGTCCTACACATA
TACGGAGATGTCGGTCGAGAGCACGGTGAATTTTAGTGCCCCCCTTGGCGATGCATCATACATTGGGGTCGAGGCGGAGG
TGCATGACGAGAATGAAGATGATGATGAAGTGCAAGAGATCGAGGAGGCCAACTATGAAGCTAGGACGGGGAGGACCGGC
AACTACATGGACACGTTTTTGGGTTTTAAACGGTTTT-TTCCGAATTTTGTGTTCTTTTGGTTTTCCACAAGTCTTCCTT
AGCTTTTGGATCAAACAAAAAAAATTGAAAAGA--------------------
>SNPs
---S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S----------------SSSSSS-------------------------
--------S-----------S-----------------------------------------------------------
-------S----------------------------------------------S-------S-----------------
-----S-------------S--S----------------S----------------------S-----------------
-----S-----------------S--------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------S--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------S----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------S--------------------------------------------------------------
------------------------------S-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------S---S-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------S------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------SSSS-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------S-----S-S---SS----S----------SS-SSSSSS-SSSSSSSSSSS---S------
----SS-------------S----S----------S-----------S-----------S-S--------S---------
-----S----------------------------------------------S---------------------------
-------------------S-SSS------S--------S---------------S------------------------
-------------S--S--------------S--------------------------S---------------------
---------------------------------------------S-S-----------------------S--------
--------------------S---------SSSSS-SSS-----------S---S--------S-------------SSS
SSSSS--------------S-------------SSS-----------S------------------S-------------
----------------------------------------S-------------------------SS------------
---------------------------------------------S----------------------------S-----
------------S------SS-SSSSSSSSSS-SSS--SSSSSS-SS-S-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSS---------S---------------------S----------SSS---------S----S-----------
-------S-SS--S------S-------SSSSSSSSSS--SSSSSSSSSSSSSSSSSS-S-SSS-S----SSSS--SS-S
S-SSS-SSSSSSSSSS-SSS--SS--SS-SS-SSS---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---SS-------------S-S--SSSSSS-S-SS-S-SSS-SSSS-SS-SSSS-S-S-SSSS--S-S-SSSS--SSSSS-
SSSSS-S-SS-SSSS-SSSS-------------------S-----SS-S-------------------------------
--------------------------------------------------------------------------------
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-------------S-----------------------S---S-------S---S------S--------SS---------
---------------------SSS-SS---SSSSSSSSSSSSSSSSSSSSSSS
>forward_672
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------TTATACACCCGGACGGAGGT------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_2018
--------------------------------------------------------------------------------
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-----------------GTAACCATTAACATGTTCAAGTCCTGT------------------------------------
--------------------------------------------------------------------------------
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>forward_720
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------------------------------------------------------------AGCAAACACCCCCTTGAGTC
--------------------------------------------------------------------------------
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>reverse_2111
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------------------------------GGTAAAAACATCTACCCTGAATTTTGC-----------------------
--------------------------------------------------------------------------------
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>forward_791
--------------------------------------------------------------------------------
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---------------------------------------------------TTTGGAGGAGGTTTGAGGCG---------
--------------------------------------------------------------------------------
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>reverse_2879
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------------------------------------------------------------------------------AC
TTGTTTCATGAGCAGAAGC-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------
>forward_798
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------GAGGTTTGAGGCGTGGGTAC--
--------------------------------------------------------------------------------
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>reverse_3301
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--------------------TGAAAACAAGCCGAAAGCAGC---------------------------------------
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>forward_1346
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------TCTTGCCAGATGCGTTCTTC--------------
--------------------------------------------------------------------------------
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>reverse_3385
--------------------------------------------------------------------------------
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------------------------CCCCGGAACCTAGTTTGAGC------------------------------------
--------------------------------------------------------------------------------
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>forward_3330
--------------------------------------------------------------------------------
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------------------------------CCGAAAGCAGCCACACATTT------------------------------
--------------------------------------------------------------------------------
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>reverse_4882
--------------------------------------------------------------------------------
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-CCGGCTCTCCCTTCGAATTT-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------
