>input_sequence_31160
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------------------------------------------------------------------ATGGCCGACGACGG
GCTCGACCGGTGGCGCGGCTTCTTCCGGGGCGCCGGCGTCGGCATCTGCGAGGCCATCGAGAAGGCCATCCTCGTCGCCG
CCGCCGACGAGCCGCAGGAGTTCCTGCGCCGCCGCGACCGCATAGCCGAGCGCCTCTTCAACGCGCTCCTCGCTCGCC--
-CCTCCTGCCACGGCTGCACCGCCAGCACCGGCTCCGTCCCCCCCGCCACGCCCGCCGTCGCGGAGGACAAGGGCAGCGT
GCGCCGCGTCCCCGAGAAGGACTGCAAGGTCGACAGCAGCAGCCTCGGCGCGCCCGGGGGCGGGGCGCTCGGCGGCGGCA
TCAGCGAGGATGACGACTCCGACTCCGAGGACGACGAGCGCCTCCGCCGCGCCGCCGCCAGCAACTACGGCCACAACTAT
GACGACGACAACGACGT---------GGAGGAGGAGCAGGACGCGGCCGCGCCGGCGGAGGAGGACCACCACGCTGAGGA
TGACGACCCGGAGGCTGAGGAGCTGGAGGCCCTAACCAACGAGATCGATGAGGAGTCACAGATCGTTGGGGAGGTCCTCC
GCATCAAGGAGCTCCTGCTGCACAAGCAAGACCATGTATGCACTCCTATCTGTGCAGTTCTTCCATTC--ATTGCTAAAC
CTGTTATTTGTCAACTCCAGTGAGCACTTAGCATTGA-TCTGAACTAAAACACAAACGGTGTCTTGCAGTCGGATGCTAC
TCTGTTCGACTCACTTAGGAGGCTGCAGCTGATGCAATTGTCCGTCTCCACGCTTAAGGTACCTATATATTTTGCATACC
GCATACGAGATATCTGGTTTTGTTGTTATTTGGTTTGCTTATCTTTGGGGCTGTTCATCGTAGGCTACTGAGATTGGGAG
GGCTGTTAATGGCCTTCGGAAGCACAGCTCGCAGCAGATTCGTCACCTCGCGCTGGCTCTCATACAGTAAGCTTCATGAA
CCTTTATCTAGTTTGGCTTTATAGAACTAGTTCATGCTTGAATTTGAAGAGTTCAGTGAGGCAAATTACTTCTCTCATGT
TCCGAAAAGA-TTTTGACCAGTACCAGTCCATCTGCACTGCTACATACTCACAATTTACCTTTGTTCAGCATCCCAAAGA
AAAATGAGAAAATCACCTTGTTAGCATGAGTCCAAAGCAATCTTGTAAACTATTGTTGACATCTTCAGTTGCTTTTTGTG
TTTCCAGGGATTGGAAAATTTTGGTTGATGAGTGGGTCAGTACTACCAACGTTGCCCTTGCAGGTAAAGGATCTGAGTTT
GTTCAATGTTACATTATTTCATCCATCAGTTTCAGAGTTAATTCTGAGTGAATGAATGCTCAGTTGCAAGCCTCTTAGCT
TACTATATTATTGCTGCTTTTACCTGTAGACAACTCCCCAGGAACTTCAAACCCTTCTGTTGTGGATGATGATGAAGAAG
AAGAAGGCCTTCCTTCTCCACCTTTGGATGAAGGAGCATTCTTTGCACCTGAGACTACTGCCATTCAACTCTCTGAGGTA
CTAATATATCCACTCTTGCTATCTGAATTGTTTTAGTGTCGAACAATAAGCTAATTAACTTCCATTGTTATTTTGCCTGT
TCGCCTTTGCAACCTGAAGTTCTTTGACGAAATGGATGAAGATGGAAGTGAGTACAACTACCCAAATTGCTTAGTTTTCC
CTTGCTATGCTAGCACTCCACGGATTGTGG--TAACTAACATTATATTATGACAGACTTGAGACACAACAATGATGTCCG
CCTTG-GAAACAAGAGGGAAAACAATGGCAGGAGGCCTGCAAACCATTCAACTGTGTCAAAACCAGAACTTACTCGA---
-----CCTGTTGGAACTGTTGAAAGAGATCAGTTCAGGAGGCCAGAATTGACAAGGCAAGAACCACCAATGAGGCATACA
AACCAGCAAAAACCTCAAGGTTCAAATTTGCAAGCCAAGCCCCATGGCATGCTCAACAAGCAATCCAGGCCCCTGAGTTC
TGATTCTGGATCTATGAGACCAATGAAGGCAGCTACTCAACAGAAGCCCATCGGTGAGATGAAGTACAAACAGACTCAGG
AACACTTCGGTGTCGAAAGAAAACCTGCAATGGGTCATGTGGATG-----------------------------------
-----------------------------------------------------------TAAGTATCACATGTTACTGAG
ACTTAAGCTATGATGATGCTTAAGATCTCATGACTTATATCTATCCTTTGACTCCAGAAATCAAGGCTTCGTGCGCAGCC
TTCATCAGGAGTCAGGTTAGAGTCGGCAAGGCCAAAGACCCAGGATGGCTTGGAAAGCAACGTAAGGTTGGAGGC----A
GCCAAGCGTAGGCTCCAGGAACGTTAT-----------------------------------------------------
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--------CAGGAAGCTGAAAATGGTTCGTGTCG-------TCTTTTTGTTGCAATATTTTCTTTTATCACATATATG--
------ATCTTGTGGTTTATCTAACTGTACTCTTCCATCCGCCACAGCAAAGAAGCAGCGCACGATACAAGTAATGGAGC
TGGGTGACA-TACCAAAGCCTAAGAGTAATACCAGGCAACCTATGGTGAAGTCAAGGAATAACATTAGAAGTAGGGTACT
CGGCCGGCGCTGA-------------------------------------------------------------------
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--------------------------------------------------------------------
>chr1D_1_TraesCS1D01G259000
CCAAACCAAAATCATTTCAGTAATGGAGTAGTGAACAGTTATGTTTGATTGATTTGGAGGGATATTTGG--------TGA
GATGAGAACGAAATTAGGCAATCAATTGGCACTGCCGATAATAATGGAGTAAATCATGGGCAGCGATCGAAGTAGTTAAT
GCCAGTACCAAACTAT------ATACTACTGCTAAACAAAACCAGGGGAGGGGAGGGGAGGCGGGAGAAAGAGAGTGCAT
GTCGACTCGACTCGACTCGGCGGGGTCAAACCAAAGAAGCCACCACGAGGCCGCCGCGTCGCCCCGCCCCCCTCCTG---
--------------CACAAGGAAAA------------------------------------------GAAGCGAAGCGGT
GACGCGACCCGGTTTGTTTTACCGCGCATATTTTGGCCTTTTGGGCCCACGGGGCGGGA---------------------
--------GGGAGGGGTCGTCGCATCGCGGGTAGCTCTTGTTCAATTAGCTGCGCTGTGCGTGCGTGCGTGCCGGTGCTC
CTAGTCCTCGTGGGCTCGGGTC------------GCGTAGCGTACCCTGCCATCCGCGTCCCTATCCACCCGCCGCGCCC
CGTCCACAT-CCCGTCCCGACCCTTCCTGGTGGTCGCATCGCCCTCGCCTAGCCTCGCCT-----TCTCCCCCCAGCCCA
GCCGAGCCGCACCGTCTTCTTCCTCCCACC---------CCCAGCCCTACCCTACCCTACCTCCCCCTTTCCGCAAGGGC
CAGATAGGATTTGGTAAGGTTCTTCCTGCCGCC---GCAGAAATCCTCAAGGAAACCGGCACTTGGGGGCCAAGCAACCA
ACGAAGGGAAACCTAACCCAACTCGACTCGGTTTTCTCGATTCGTTTTCT----------------------------GT
TCGTCGATTTGATTTTTG--------GGCGAATTTCGCTTTCACGATCGGCGGATTCCGGGGGGCATCGGATTCGCGATC
GGGGGCTGGGATTAGATTCTCGGCCGCGGC---GTAGTAATAATTTCACAA----GG-----------GGTAATCGGCGG
AGCATCGGTTCTTCTAGTAGTGCTAGCTGTTTGTTCTCGTCTGTCGGGGCCGCGATCTCGGGGGCGATGGCCGACGACGG
GCTCGACCGGTGGCGCGGCTTCTTCCGGGGCGCCGGCGTCGGCATCTGCGAGGCCATCGAGAAGGCCATCCTCGTCGCCG
CCGCCGACGAGCCGCAGGAGTTCCTGCGCCGCCGCGACCGCATAGCCGAGCGCCTCTTCAACGCGCTCCTCGCTCGCC--
-CCTCCTGCCACGGCTGCACCGCCAGCACCGGCTCCGTCCCCCCCGCCACGCCCGCCGTCGCGGAGGACAAGGGCAGCGT
GCGCCGCGTCCCCGAGAAGGACTGCAAGGTCGACAGCAGCAGCCTCGGCGCGCCCGGGGGCGGGGCGCTCGGCGGCGGCA
TCAGCGAGGATGACGACTCCGACTCCGAGGACGACGAGCGCCTCCGCCGCGCCGCCGCCAGCAACTACGGCCACAACTAT
GACGACGACAACGACGT---------GGAGGAGGAGCAGGACGCGGCCGCGCCGGCGGAGGAGGACCACCACGCTGAGGA
TGACGACCCGGAGGCTGAGGAGCTGGAGGCCCTAACCAACGAGATCGATGAGGAGTCACAGATCGTTGGGGAGGTCCTCC
GCATCAAGGAGCTCCTGCTGCACAAGCAAGACCATGTATGCACTCCTATCTGTGCAGTTCTTCCATTC--ATTGCTAAAC
CTGTTATTTGTCAACTCCAGTGAGCACTTAGCATTGA-TCTGAACTAAAACACAAACGGTGTCTTGCAGTCGGATGCTAC
TCTGTTCGACTCACTTAGGAGGCTGCAGCTGATGCAATTGTCCGTCTCCACGCTTAAGGTACCTATATATTTTGCATACC
GCATACGAGATATCTGGTTTTGTTGTTATTTGGTTTGCTTATCTTTGGGGCTGTTCATCGTAGGCTACTGAGATTGGGAG
GGCTGTTAATGGCCTTCGGAAGCACAGCTCGCAGCAGATTCGTCACCTCGCGCTGGCTCTCATACAGTAAGCTTCATGAA
CCTTTATCTAGTTTGGCTTTATAGAACTAGTTCATGCTTGAATTTGAAGAGTTCAGTGAGGCAAATTACTTCTCTCATGT
TCCGAAAAGA-TTTTGACCAGTACCAGTCCATCTGCACTGCTACATACTCACAATTTACCTTTGTTCAGCATCCCAAAGA
AAAATGAGAAAATCACCTTGTTAGCATGAGTCCAAAGCAATCTTGTAAACTATTGTTGACATCTTCAGTTGCTTTTTGTG
TTTCCAGGGATTGGAAAATTTTGGTTGATGAGTGGGTCAGTACTACCAACGTTGCCCTTGCAGGTAAAGGATCTGAGTTT
GTTCAATGTTACATTATTTCATCCATCAGTTTCAGAGTTAATTCTGAGTGAATGAATGCTCAGTTGCAAGCCTCTTAGCT
TACTATATTATTGCTGCTTTTACCTGTAGACAACTCCCCAGGAACTTCAAACCCTTCTGTTGTGGATGATGATGAAGAAG
AAGAAGGCCTTCCTTCTCCACCTTTGGATGAAGGAGCATTCTTTGCACCTGAGACTACTGCCATTCAACTCTCTGAGGTA
CTAATATATCCACTCTTGCTATCTGAATTGTTTTAGTGTCGAACAATAAGCTAATTAACTTCCATTGTTATTTTGCCTGT
TCGCCTTTGCAACCTGAAGTTCTTTGACGAAATGGATGAAGATGGAAGTGAGTACAACTACCCAAATTGCTTAGTTTTCC
CTTGCTATGCTAGCACTCCACGGATTGTGG--TAACTAACATTATATTATGACAGACTTGAGACACAACAATGATGTCCG
CCTTG-GAAACAAGAGGGAAAACAATGGCAGGAGGCCTGCAAACCATTCAACTGTGTCAAAACCAGAACTTACTCGA---
-----CCTGTTGGAACTGTTGAAAGAGATCAGTTCAGGAGGCCAGAATTGACAAGGCAAGAACCACCAATGAGGCATACA
AACCAGCAAAAACCTCAAGGTTCAAATTTGCAAGCCAAGCCCCATGGCATGCTCAACAAGCAATCCAGGCCCCTGAGTTC
TGATTCTGGATCTATGAGACCAATGAAGGCAGCTACTCAACAGAAGCCCATCGGTGAGATGAAGTACAAACAGACTCAGG
AACACTTCGGTGTCGAAAGAAAACCTGCAATGGGTCATGTGGATG-----------------------------------
-----------------------------------------------------------TAAGTATCACATGTTACTGAG
ACTTAAGCTATGATGATGCTTAAGATCTCATGACTTATATCTATCCTTTGACTCCAGAAATCAAGGCTTCGTGCGCAGCC
TTCATCAGGAGTCAGGTTAGAGTCGGCAAGGCCAAAGACCCAGGATGGCTTGGAAAGCAACGTAAGGTTGGAGGC----A
GCCAAGCGTAGGCTCCAGGAACGTTAT-----------------------------------------------------
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--------CAGGAAGCTGAAAATGGTTCGTGTCG-------TCTTTTTGTTGCAATATTTTCTTTTATCACATATATG--
------ATCTTGTGGTTTATCTAACTGTACTCTTCCATCCGCCACAGCAAAGAAGCAGCGCACGATACAAGTAATGGAGC
TGGGTGACA-TACCAAAGCCTAAGAGTAATACCAGGCAACCTATGGTGAAGTCAAGGAATAACATTAGAAGTAGGGTACT
CGGCCGGCGCTGATTCTTCTGTGATGTTTTCCTTCACCTGATGAATTTGTCGCCATGTCGAGCTGGTCCAAAAGGAAGCA
GCTGAACTTTGTTGCCAGGACCAAAAACCATATTTTTGAACATAAGCACCTTC---ACCTCTGATGGAGAGTTATCCTTG
AAGTTGCGAGAGTCGCGCTGGATGCAATAAGTTAAGCCTTT-GCTTTGCATGCATTCTCCGCTCTTGCATTGGGAGCTCG
GGAGAGTTTAGTCATGTCTTGATAATCTGAGAGTGGACATGTAGTTCATCCTGTATCGGCTGGTTAATTTTTCTTCCACT
TTACTTGGGAAGGAAGCTGTAGATACTCAGATAGAATAATTATCAAAATTCTCGGTACATTCCATCTAGCCTGGACATTT
TACATGAGTTTATTCCGTGGGACATTCTTGGTATATTCCTTGCTCCTTTGCAAGTCTGGACTAATTATGATCCGGTGGCT
GGCCTACTTGCTCCTCACATGCAAGC-TTAGGTCAGCCTTTGCACCAACCATCCTCTCCAATGGTGGTAATGTGCTTGTT
TGGTCATGATCAGACTTTGCATTCTTGCTGCTCGTAAGAG-AGTGTCAGTGTCAACTGTCTCTACGCACTGCAAATGCAA
GGTGGTTGCAAATTTCTAAGTTATCCTCGGGGAAAATTGCTTAGTTGTATGGAGAAGATGGGAGCAAAAAAGTGATGAAG
ATGTGCATTGCCGTTTGGGA-TAGCGTGGATTCCACCAGCGTAGTGGTCAGTCAGTATGGGCAATAGCGTGAGCAGACAA
CCAATAAAGCCCGCGCACCATTTATTCCTACTTTCTTCTTCTTATCCATTGTTGCATGTTCCAACTTCCATTAAAGATAT
TCTTTTCTATTATTTTTTTCTTTAGTTCGGTAGAACGTAGAAGCAAGCAAAGACTTGTGACTTGTGAGCCGGCCATTGC-
------AGGAGTCTGGTCTGGCTCCAGGATCCGGCAAATAGCTAGGTCAGCGTTACCAGCTATACTA-
>chr1B_1
CCAAACCAAAATCATTTCAGTAATGGAGTAGTGAACATTTATGTTTGATTGATCTGGAGGGATATCTGG--------TGA
GATGAGAAGGAAATTAGCCAATCAATTGGCACTGCCGATAATAATGGAGTAAATCATGGGCAGCGATCGAAGTAGTTAAT
GCCAGTACCAAACTAT------A-----CTGCTAAACAAAACCAGGGGAGGTGAGGGGAGGCGGGAGAAAGAGAGTGCAT
GTCGACTCGGG----------GGGGTCAAACCAAAGAAGCCACCACGAGGCCGCCGCGTCG-----CCCCGCTCCTG---
--------------CAGAAGGAAAAGGAGGGATCGCGCT-----TGCCGAAGGAAAAGAAGCGAAGCGAAGCGAACCGGT
GACGCGACCCGGTTTGTTTTACCGCGCGTATTTTGGCCTTTTGGGCCCACGGGGCGGGA---------------------
--------G----------------------TAGCTCTTGTTCAGTTAGCTGCGCTGTGCGTGCGTGCGTGCCGGTGCTC
GTAGTCCTCGTGGGCTCGGGTC------------GCGTAGCGTACCCTGCCATCCGCGTCCCTATCCACCCGCCCCGCCC
CGTCCCCATCTCCGCCCCGACCCTTCCTGGTGTTTGCATCGCCCTCGCG-AGCCTCGCCT-----TCTCCCCCCAGCCCA
GCCGAGCCGCACCGTCTTCTTCCTCCTACCCCTCCCACGCCCAGCCCTACCCCACCCTACCTCCCCCTTTCCGCAAGGGC
CAGATAGGATTTGGTAAGGTTCTTCCTGCCGCC---GCAGAAATCCGCAAGGAAACCGGCACTTGGGGGCCAAGCAACCA
ACGAAGGGAAACACAACCCAACTCGACTCGGTTTCCTCGATTCGTTTCGGCCCGATTCGTTTTCTGCTCGCTCGCCCCGT
TCGTCGATTTGATTTTTTT-------GGCGAATTTCGCTTTCACGATCGGCGGATTCCGGGGGGCATCGGATTCGCGATC
GGGGGCTGGGATTAGATTCTCGGCCGCGGC---GTAGTAATAATTTCGCAA----GGAACCCGCCCGAGGTAATCGGCGG
AGCATCGGTTCTTCTAGTAGTGCTAGCTGTTTGTTCCCGTCTGTCGGGGTCGCGATCTCGGGGGCGATGGCCGACGACGG
GCTCGACCGGTGGCGCGGCTTCTTCCGGGGCGCCGGCGTCAGCATCTGCGAGACCATCGAGAAGGCCATCCTCGTCGCCG
CCGCCGACGAGCCGCAGGAGTTCCTGCGCCGCCGCGACCGCATAGCCGAGCGCCTCTTCAACGCGCTCCTCGCCCGCC--
-CCTCCTGCCACGGCTGCACCGCCAGCACCGGCTCCGTCCCCCCCGCCACGCCCGCCGTCGCGGAGGACAAGGGCAGCGT
GCGCCGCGTCCCCGAGAAGGAGTCCAAGGTCGATAGCAGCAGCCTCGGCGCGCCCGGGGGTGGGGCGCTCGGCGGCGGCA
TCAGCGAGGATGAAGACTCCGACTCGGAGGACGACGAGCGCCTCCGCCGCGCCGCCGCCAGCAACTACGGCCACAACTAT
GATGACGACAACGACGACGAGGAGGAGGAGGAGGAGCAGGACGCGGCCGCACCGGCGGAGGAGGACCACCACGCTGAAGA
CGACGACCCGGAGGCTGAGGAGCTGGAGGCCCTCACCAACGAGATCGATGAGGAGTCGCAGATCGTTGGGGAGGTCCTCC
GCATCAAGGAGCTCCTCCTGCACAAGCAAGACCATGTATGGACTCCTATCTGTGTTCATTGCC-------------AAAC
CTGTTATTTGTCTACTCCAGTGAGCACTTAGCATTGATTCTGAACTAAAACACAAACGGTGTCTTGCAGTCGGATGCTAC
TCTGTTCGACTCACTTAGGAGGCTGCAGCTGATGCAATTGTCCGTCTCCACGCTTAGGGTACCTAT----TTTGCATACC
ACATATGAGATATCTGGTTTTGTTGCTATTTGGTTTGCTTATCTTTGGGGCTGTTCATCGTAGGCTACTGAGATTGGGAG
GGCTGTTAATGGCCTTCGGAAGCACAGCTCGCAGCAGATTCGTCACCTCGCGCTGGCTCTCATTCAGTAAGCTTCATGAA
CTTTTATCTAGTTTGGCTTTATAGAACTAGTTCATGCTTGAATTTGAAGAGTTCAGTGAGGCAAATTACTTCTCTCATGT
TCTGATTTTTTTTTTGACTAGTACCAGTCCATCTGCACTGCTACATAGTCACCATTTACCTTTGTTCACCATCCCAAAGA
AAAATGAGAAAATTACCTTGTTAGCATGAGTCCAAAGCAATCTTGTAAACTATTGTTGACATCTTCAGTTACCTTTTGTG
TTTCCAGGGATTGGAAAATTTTGGTTGATGAGTGGGTCAGTACTACCAACGTTGCCCTTGCAGGTAAAGGATCTGAATTT
GTTCAATGTTACATTATTTCATCCATCAGTTTCAGAGTTAATTCTGAGTGAATGAATGCTCAGTTGCAAGCCTCTTAGCT
TACTATATTATTGCTGCTTTTACCTGTAGACAACTCCCCAGGAACTTCAAACCCTTCTGTTGTGGATGATGATGATGAAG
AAGAAGGCCTTCCTTCTCCACCTTTGGATGAAGGAGCATTCTTTGCACCTGAGACTACTGCCATTCAACTCTCTGAGGTA
CTAATATATCCACTCTTGCTATCTGAATTGTTTTAGTGCTGAACAATAAGCTAATTAACTTCCATTGTTACTTTGCCTGT
TCGCCTTTGCAACCTGAAGTTCTTTGACGAAATGGATGAAGATGGAAGTGAGTACAACCACCCAAATTGCTTAGTTTTCC
CTTGCTATGCTAGCACTCCATAGATTGTGTGATAACTAACATTATATTATGACAGACTTGAGACACAACAATGATGCTCG
CATTG-GAAACAAGAGGGAAAACAATGGCAGGAGGCCTGCAAACCATTCAACTGTGTCAAAACCAGAACTTACTCGA---
-----CCTGTTGGAACTGTTGAAAGAGATCAGTTCCGGAGGCCAGAATTGACAAGGCAAGAACCACCAATGAGGCATACA
AACCAGCAAAGACCTCAAGGTTCAAATTTGCAAGCCAAGCCCCAAGGCATGCTCAACAAGCAATCCAGGCCCCTGAGTTC
TGATTCTGGATCTATGAGACCAATGAAGGCAGCTACTCAACAGAAGCCCATCGGTGAGATGAAGTACAAACAGACCCAGG
AACACTTCGGTGTCGAAAGAAAACCTACAATGGGTCATGTGGATG-----------------------------------
-----------------------------------------------------------TAAGTATCACATGTTACTGAG
ACTTAAGCTATGATGATGCTTAAGATCTCGTGACTTATATCTATCCTTTGACTCCAGAAATCAAGGCTTCGTGCACAGCC
TTCATCAGGAGTCAGGTTAGAGTCGGCAAGGCCAAAGACCCAGGATGGCTTGGAAAGCAACGTAAGGTTGGAAGC----A
GCCAAGCGTAGGCTCCAGGAACGTTAC-----------------------------------------------------
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--------CAAGAAGCTGAAAATGGTTCGTGTTG-------TCTTTCTATCGCAATATTTTCTTTCTTCACATCTATG--
------ATCTTGTGGTTTACCTAACTGTACTCTTCCATCGGCCACAGCTAAGAAGCAGCGCACGATACAAGTAATGGAGC
TGGGGGACA-TACCAAAGCCTAAGAGTAACACCAGGCAACCTATGGTGAAGTCAAGGAATAACATTAGAAGTAGGGTACT
CGGCCGGCGCTGATTCTTCTGTGATGTTTTTCCTCACTTGATGAATTTGTCGCCATGTCAAGCTGGTCCAAAAGGAAGCA
GCTGAACTTGGTTGCCAGGACC-AAAACCATATTTTTGAACATAAACACCTTCTTCACCTCTGATGGAGAGTTATCCTTG
AAGTTGCGAGAGTCGCGCTGGATGCAATAAGTTAAGCCTTT-GCTTTGCATGCATTCTCCGCTCTTGCGTTGGGAGCTCG
GGAGAGTTTAGTCATGTCTTGATAATCTGAGAGTGGACATGTAGTTCATCCTGTATCGGCTGGTTAATTTTTCTTCCACC
TTACTTGGGAAGGAAGCTGTAGATACTCAGATAGAATAATTATCAATATTCTCGGTACATTCCATCTAGCCTTGACATTT
AACATGAGTTTATTCCGTGGGACATTCTTGGCATATTTCTTGCTCCTTTGCAAGTCTGGACTAATTATGATCCGGTGGCT
GGCCTACTTGCTCCTCACATGCAAGCCTTAGGTCAGCCTTTGCACCAACCATCCTCTCCAATGGTGGTAATGTGTTTGTT
TGGTCATGATCAGACTTTGCATTCTTGCTGCTTGTAAGAGTAGTGTCAGTGTCAACTGTCTCTACTGGCTGCAAATGCAA
GGTGGTTGCAAATTTCTAAGTTATCCAC-GGGGAAATTGCTTAGTTGTATGGAAAAGATGGGAGCAA-AAAGTGATGAAG
ATGTGCGTTGCCGTTTGGGA-TAGCGTGGATTCCACCAGCGTAGTGGTCAGTCAGTATGGGCAGTAGCGTGAGCAGACAA
CCAAGAAAGCCCGCGCACCATTTATTCCTGCTTTCTTCTTCTTATCCATTGTTGCATGTTCCAACTACCATTAAAGATAT
TTTTC-------TTTTTTTCTTTAGTTCGGTAT-------AAGCAAGCAAAGACTTGTGACTTCGGAGCCGGCCATTGT-
------AGGAGTCTGGTCTGGCTCCGGAATCTGGCAAATAGCTAGGTCAGCGTTACCAGCTATTACTA
>chr1A_17
TCAATAC----------------TGGAGGAGTGAACATTTATGCTTGATTGATTTGGAGGGATATTTGGTGATGAGATGA
GATGAGAAGGAAAGTAGGCAATCAATTGGCAGTGCCGATAATAATGGAGTAAATCATGGGCAGCGATCGAAGTAGTTAAT
GCCAGTACCAAACTAGTATAGCA-----CCGCTAAACAAAACCAGGGCAGGGGAGGGGAGGCGGGAGAAAGAGAGTGCAT
GTCGACTCGGCTCGGCTCGGCGGGGTCAAACCAAAGAAGCC--------------GCGTCG-----CCCCGCTCCCTTCT
GCAGAATCTATCTACAGAAGGAAAAGGAGGGTTCCTGCGACCGCTGCCAAAGGAAAAGAAGCGACC-----CGAACCGGT
GACGCGGCCCGGTTTGTTTTACCGCGCGTATTTTGGG---------CCACGGGGCGGGAGCCGGGAGGGGTCGTCGCATC
CAGTACTGG----------------------TAGCTCTCGTTTAGTTAGCTGCG----GCGTGCGTGCGTGCCGGTGCTG
GCAGTCCTCGTGGGCTCGGGTCGCGTCTCGCGTGGCGTAGCGTACCCTGCCATCCGCGTCCCTATCCACCCGCCCCGCCC
CGTCCCCATCCCCGTCCCGACCCTTCCCGGTGTTCGCATCGCCCTCGCG-AGCCTCGCCTGGCCTTCTCCCCCCAGCCCA
GCCCAGCCGCACCGTCTTCTTCCTCCCACCCCGCCCACGCCCAGCCCTACCCTACCCTACCTCCCCCTTTCCGCAAGGGC
CAGATAGGATTTGGTAAGGTTCTTCCTGCCGCCGCCGCAGAAATCCTCACGGAAACCGGGCCTTGGGGGCCAAGCAACCC
AGCG----------AACCTAACTCGACTCGGTTCTCTCGATTCGTTCCTGCTCGCCCCT---------------CCCCGT
TTCTCGATTTGATTTGATATTTTTCCGGCGAATTTCGCTTTCACGATCGCCGGATTCCGGGGCGCATCGGATTCGCGATC
GGGGGCTGGGATTAGATTCTCGGCCGCGGCGTAGTAGTAATAATTTCGCAAGGGGGGAACCCGCCCGAGGTAATCGGCGG
AGCATCGGTTCTTCTGGTGGTGCTAGCTGTTTGTTCCCGTCCTGTGCGGCC-CGATCTCGGGGGCGATGGCCGACGACGG
GCTCGACCGGTGGCGCGGCTTCTTCCGGGGCGCGGGCGTCGGCATCTGCGAGGCCATCGAGAAGGCCATCCTCGTCGCCG
CCGCCGACGAGCCGCAGGAGTTCCTGCGACGCCGCGACCGCATCGCCGAGCGGCTCTTCAACGCGCTCCTCGCCCGCCCC
TCCTCCTGCCACGGCTGCACCGCCAGCACCGGCTCCGCGCCCCCCGCCACGCCCGCCGTCGCTGAGGACAAGGGCAGCGT
GCGCCGCGTCCCCGACAAGGACTGCAAGGTCGACAGCAGCAGCCTCGGCGCGCCCGGGGGCGGGGCGCTCGGCGGCGGCA
TCAGCGAGGACGACGACTCTGACTCTGAGGACGACGAGCGCCTCCGCCGCGCCGCCGCCAGCAACTACGGCCACAACTAT
GACGACGACA------ACGAGGAGGAGGAGGAGGAGCAGGACGCGGCCGTGCCGGCGGAGGAGGACCACCACGCAGAGGA
TGACGACCCGGAGGCTGAGGAGCTGGAGGCCCTCACCAACGAGATCGATGAGGAGTCGCAGATCGTTGGGGAGGTCATCC
GCATCAAGGAGCTCCTCCTGCACAAGCAAGACCATGTATGGACTCCTATCTGTGCACTTCTTCCATTCATATTGCTAAAC
CTGTTATTTGTCAACTCTAGTGAGCACTTAGCATTGA-TCTGAACTAAAACACAAATGGTGTCTTGCAGTCGGATGCTAC
TCTGTTCGACTCACTTAGGAGGCTGCAGCTGATGCAATTGTCCGTCTCCACGCTTAAGGTACCTAT----CTTGCATACC
GCATATGAGATATCTGGTTTTGTTGCTATTTGGTTTGCTTATCTTTGGGGCTGTTCATCATAGGCTACCGAGATTGGGAG
GGCTGTTAATGGCCTTCGGAAGCACAGCTCGCAGCAGATTCGTCACCTCGCGCTGGCTCTCATTCAGTAAGCTTCATGAA
CTTTTATCTAGTTTGGTTTTATACAACTAGTTCATGCTTGAATCTGAAGAGTTCAGTGAGGCAAATTACTTCTC--ATGT
TCTGAAAAGA-TTTTGACTAGTACCAGTCCATCTGCACTGCCACATGGTCACCATTTACCTTTGTTCGCCATCCCAAAGA
AAAATGAGAAAATTACCTTGTTAGCATGAGTCCAAAGCAATCTTGTAAACTATTGTTGACATCTTCAGTTGCTTTTTGTG
TTTCCAGGGATTGGAAAATTTTGGTTGATGAGTGGGTCAGTACTACCAACGTTGCCCTTGCAGGTAAAGGATCTGAATTT
GTCCAATGTTACATTATTTCATCCATCAGTTTCAGAGTTAATTCTATGTGAATGAATGCTCAGATGCAAGCCTCTTAGCT
TACTATATTATTGCTGCTTTTACCTGCAGACAACTCCCCAGGAACTTCAAACCCTTCTGTTGTGGATGATGATGATGAAG
AAGAAGGCCTTCCTTCTCCACCTTTGGATGAAGGAGCATTCTTTGCACCTGAGACTACTGCCATTCAACTCTCTGAGGTA
CTAATATATCCACTCCTGCTATCTGAATTGTTTTAGTGATGAACAATAAGCTAATTAACTTCCATTGTTATTTTGCCTGT
TCGCCTTTGCAACCTGAAGTTCTTTGACGAAATGGATGAAGATGGAAGTGAGTACAACTACCCAAATTGCTTAGTTTTCC
CTTGCTATGCTAGCACTCCATAGATTGTGTGATAACTAACATTATATTATGACAGACTTGAGACACAACAATGATGCTCG
CCTTG-GAAACAAGAGGGAAAACAATGGCAGGAGGCCTGTAAACCATTCAACTGTGTCAAAACCAGAACTTACTCGA---
-----CCTGTTGGAACTGTTGAAAGAGATCAGTTCAGGAGACCAGAATTGACAAGGCAAGAACCACCAATGAGGCATACA
AACCAGCAAAAACCTCAAGGTTCAAATTTGCAAGCCAAGCCCCAAGGCATGCTCAACAAGCAATCCAGGCCCCTGAGTTC
TGATTCTGGATCTATGAGACCAATGAAGGCGGCTACTCAACAGAAGCCCATCGGTGAGATGAAGTACAAACAGACTCAGG
AACACTTCGGCGTCGAAAGAAAACCTGCAATGGGTCATGTGGATG-----------------------------------
-----------------------------------------------------------TAAGTATCACATGCTACTGAG
ACTTAAGCTATGATGGTGCTTAAGATCTCATGACTTATATCTATCCTTTGACTCCAGAAATCAAGGCTTCGTGCACAGCC
TTCATCAGGAGTCAGGTTAGAGTCGGCAAGGCCAAAGACCCAGGATGGCTTGGAAAGCAACGTAAGGTTGGAAGT----A
GCCAAGCGTAGGCTTCAGGAACGTTAC-----------------------------------------------------
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--------CAGGAAGCTGAAAATGGTTCGTGTTA-----TACCTCTTTGTTGCAATATTTTCTTTTATTGCATATATG--
------ATCTTGTGGTTTACCTAACTGTACTCTTCCATCCGCCACAGCAAAGAAGCAGCGCACGATACAAGTAATGGAGC
TGGGCGACA-TACCAAAGCCCAAGAGTAACACCAGGCAACCTATGGTGAAGTCAAGGAATAACATTAGAAGTAGGGTACT
TGGCCGGCGCTGATTCTTGTGTGATGTTTTCCTTCACCTGATGAATTTGTCGCCATGTTGAGCTGGTCCAAAAGGAAGCA
GCTGAACTTGGTTGCCAGGACC-AAAACCATATTTTTGAACATAAGCAC---CTTCACCTCTGATGGAGAGTTATCCTTG
AAGTTGCGAGAGTCGCGCTGGATGCAATAAGTTAAGCCTTTTGCTTTGCATGCATTCTCCGCTCTTGCGTTGGGGGCTCG
GGAGAGTTTAGTCATGTCTTGATAATCTGAGAGTGGACATGTAGTTCATCCTGTATCGGCTGGTTAATTTTTCTTCCACT
TTACTTGGGAAGGAAGCTGTAGATACTCAGATAGAACAATTATCAATATTCGGTACATTTCACA--TATCCTGGACATTT
TACATGAGTTTATTCCGTGG-ACATTCTTGGCATATTCGTTGCTTCTTTGCAAGTCTGGACCAATTATGATCCGGTGGCT
GGCCTACTTGCTCCTCACATGCAAG-CTTAGGTCAGCCTTTGCACCAACCATCCTCTCCAATGGTGGTAATGTGCTTGTT
TGGTCATGATCAGACTTTGGGTTCTTGCTGCTCGTTAGAGTAGTGTCAGTGTCAACTGTCTCTACGCACTGCAAATGCAA
TGTGGTTGCAAATTTCTAAGTTATCCTC-GGGGAAATTGCTTAGTTGTATGGAAAAGATGGGAGCAA-AAAGTGATGAAG
ATGTGCATTGCCGTTTGGGAGTAGCGTGGATTCCACCAGCGTAGTGGTCAGTCAGGATGGGCAATAGCGTGAGCAGACAA
CCAAGAAAGCCAGCGCACCATTTATTCCTCCTTTCTTCTTCTTATCCATTGTTGCATGTTCCAACTTCCATTAAGGATCT
TTTTTTTC--TATTTTTTTCTTTAGTTCGGTAG-------AAGCAATCCAAGGCTTGTGACTTGTGAGCCGGCCATTGTT
CCACCAAGCAGTCTGGTTTGGCTCCAGAATCTGGCAAATAGCTGGGTCAGCGTTACCAGCTATACTA-
>chr3A_2726
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------------TGATAGACTTGAGAAATAACAAGGATGGGCG
CCTTTCGAAACAAGAGGGAAAACAATGGCAGGAAGCCTGCCAATCATTCAACTGTGTCAAAACCAGAACTTACTAGTCAT
GTACTCCTGTTGGAACTGTTAAAAGAGAGCAGTTCAGGAGGCCCGAACTGATAAGGCAAGAAGTACCAATGAGGCATTCA
AACCAGCAAAACCCTATGAGTTTAAATTTGCAAGCCAGGCTCCATGGCACATAACGTGTGTATGTGGTATGCGCTTTAGG
TAGGCTGCACCGGCTGTTGATCCAGATAT---------------------------------------------------
---------------------------------GTTATGTGGATGGATCGACGACGACACCGGTTTTAGATATGGAGAGT
GAGAGCACTCCACATTATCTAGTTTGTAGATGTGAGTGGTGGCTTTGGATAGATTGATATATGTTTGCCAGGCCTTTGTG
AAATAATTAATAAAGATGGCTGCATGCATTGATTGATGCAAAGGCCGAGGGTTTAACCTCCTTTTCCAAAAAAGCCCCAT
CGCACGCTC-------------------------------------GGCTTGGAAAGCAGCATAAGGCTGGAAATGGCAA
GCTAAGTGTAGGCTCCAGGAACGTTACTCAACATGGCAATGGGTACCCGCTACCCGCGAACCCGGCGGGTAAAAACCTTA
TTAGAGTAAGGGTATGAGAAATAAAAATATTCATGGGTTTCTAAATGGGGAAAAATTGTACCCATCGGGTATGGTGGGTA
TGGGTACCGAAAGGCAATACTCATACTCGTGAACCCGCAAACCCGTATACTACTACACTATGTCAAGTAGGTCCCATGTG
TCATTGACTAGATTGAGAAAAAAAATCTAAGCTACTAGGCGCTAAGTATAACTTGTCAAGTATATTTGTTGTCGTCTCTA
TCCTCGCGCCTCCATCCACATTCAAAAGGGAAAATGACTAGGTGCCACGACGACTACAAGGTGGGGCGTGATCATGGTCA
TGGCTGCCCTATGCAACGTCCGACTACTCCGACGAGCAACACATATGCTCCACCAATGAAAAGGGTGAAGCATGAGAAGC
GCGCCATTTGGTGAATAATTTTGCACTTCACACTTGACACTTTCTTTTTAATTTCTACTATGCATGAATGTGTATGATGT
ATGAATGGATTATTTGAATGTCTTGATGATTGTTTAGTCAACATTGAACATGTTGAAATATAAATGTTGAGATGGGTATT
TTCACCCGCGGGTAGTACCCGTACCCGGCCGGGTACGGGTATGGGAACAATTTAAAACCCGAGGTGCGGGTGCGGGTACG
GGTTTGGACAAAAAATATTGAGACGGGTGTCGGTTTGGGCACCCATTACCCATATCCATACCCTGCGGGTGCCATGTTGA
AATGTTCCCAGGGAGCTGAAAAAAGGTTACCGGGAATGTTATCTTTTTGTTGCAATATTTTCTTTTACCGCATATACACA
TATATAATCTTGTGGTTTACCTGACTGTACTCTTGCATCTGCCACAGCAAAGAAGCAGCGCACGATACAAGTAATGGAGC
TGGGCGACAATACCAAAGCTTAAGATTCATAACAGG-AACCTATGGTGAAGTCTAGGAATAACATTAGAAGTAGGGTACT
--------------------------------------------------------------------------------
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--------------------------------------------------------------------
>SNPs
-------------------------------------S------------------------------------------
--------S-----------------------------------------------------------------------
-----------------------SSSSS----------------------------------------------------
---------S----S----------------------------------------------SSSSS----S---------
----------------S----------------------------------------------------------S----
---------------------------S----------------------------------------------------
---------SSSSSSSSSSSSSSSSSSSSSS-------------S-----------------------------------
S-------------------------------------------------------------------------S-----
-----S--------------------------S---------------SS------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------SS---------------------------------SSS------------------------------
-----------------S--------------------------------------------------------------
-----------------------------------------------S--------------------------------
------------------------------------S-------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------S------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------S------------------------------------------------------
----------------S---------------------------------------------------------------
---------------------------------S-----------------------S----------------------
----------------S-----------------------S---------------S-----------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------SSSS----------
-----S-------------------S------------------------------------------------------
---------------------------------------------------------------S----------------
-S------------------------------------------------------------------------------
--S---------------S----------------------------S----S---------------S-----------
-------------S------------------------------------------------------------------
----------------------------------------------------------------------------S---
--------------------------------------------------------------------------------
---------------------------------------------------------------------------S----
--------------------------------------------------------------------------------
--------------------------------------SS----------------------------------------
--------------------------------------------------------------------------------
--------------------SS-------S----------------------------------------------SS--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------S-----
------------------------------------------------------------------------S-------
--------------------------S-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------S-----------------------------------------------
-------------------S------------------------------------------------------------
----S---------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------S------------S---------------------------------------------------------
--------------------------------------------------------------------S-----------
--------------------------------------------------------------------------------
----------------------------------------------S---------------------------------
-------------------------------S------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------S---S--------------------S-------------S------------
--------------------------------------------------------------------------------
----S------------------------S--------------------------------------------------
-S----SSSS-----------------------SSSSSSS--------------------------------------S-
---------------------------S---S------------------------------------
>forward_250
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------GAGAGTGCAT
GTCGACTCGA----------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------
>reverse_1738
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---------------------------------------------------------ACAGATCGTTGGGGAGGTCC---
--------------------------------------------------------------------------------
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--------------------------------------------------------------------
>forward_525
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--------------------------------------------------------------------------------
-------------------------CGCGGGTAGCTCTTGTTCAA-----------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------
>reverse_2259
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------------------CAGTACCAGTCCATCTGCACT-----------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------
>forward_1546
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------AGGATGACGACTCCGACTCC------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------
>reverse_2957
--------------------------------------------------------------------------------
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----------------------------------------------------------------------------TCCG
CCTTGGAAACAAGAGG----------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------
>forward_1714
--------------------------------------------------------------------------------
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----------------GAGGAGCTGGAGGCCCTA----------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------
>reverse_3515
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--------------------------------------------------------------------------GCAGCC
TTCATCAGGAGTCA------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------
>forward_1738
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--------------------------------------ACGAGATCGATGAGGAGTCA----------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------
>reverse_3627
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--------------------------TCAGGAAGCTGAAAATGGTTCG--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------
>forward_3515
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-------------------------------------------------------AGAAATCAAGGCTTCGTGCG-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------
>reverse_5445
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----TAAAGCCCGCGCACCATTTA--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------
