>input_sequence_31073
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--------------ATGGGCGTGATGGGCAGGCTCAAGATCTTCGTCGTCAAGGAGCCCGTCGTCGCCGCCTCCTGCCTC
ATCGCCGGATTCGGTAT----------CCCCTCCTCTCTCCCGCCCCAACCCTAGC-GCCCTGTGCCGGCCTACCCGTAC
GTGCGCGCCTCCTACCTG-TACCCTCCATTTCTCCATC----------------GCACCCCCGCCTGGCCAGGCTCCCAG
GATTTCCGAGGAGGGGGGATCGGTCCTCCGGTTGGAC---------GGACGCAGTGCATCGATGGGGCGGGCTCTCAACG
CTTCCATGTAGTTTTCGCCTGCTAATGTCTGTTGGATCTAGGATTATTCCAGACGCGCGCTTCCCCGCAAAATTTTTGCC
GCGTCATTCCGATCGTTCCGTGACTCATGATTCATGGGCTGTACACCTTAGACCTTGCATACATTTGCCCCTATCATCGA
TATAATGATTCAACCATTGCTACCCATCCATTCCATTCCAGCCAAAGGAAGAGTAGCAGTCCGCATTTCTTGTGGCACT-
TAAGTATTGTCGATTGATGATTCTACTGTATTCTTTCTGCTGGATTCGGTCAGAACAGGTGCGAGCTGATAAGGGTTGCT
CCGGGTTAATGTCAAAAATGTAGTCGTGTGCTGAGCTGCGCTACACTTTTCTGTTTTTATTTAGCGATAGATGTTCCCAA
AGATTTACTCCCTCGCCCTTATGCCTGTGTACCTATAGGCTATAGCCACAAGACCCACCTGTTGTTATGTCTATCCGTTC
ATGAAACTGAAATGTGACTAAAGATTAGCACATATGAGCTGACTACGTAGCGTTGGGTGGGTGACTTAGCTAGACCTTGC
GCGTTCATTTCCTTGGAAATC---GAGTCAGGCTATTTAACAGCTTAAACTT-------TGTTTGCCTGTCACATGTTGT
TTACTGCTTCAG---------AAAACCAGATCGCGTGTTTCACTGCTTAAGATTTAAAAGAGGACACATTTGGACTAGTC
TGCAAACAAGATTGGCTT---GGATTAAATTCCATGTTATTTTCTAGACCCTAATACTCTATTACTATCAATGTATACCA
CCTCACAGCTCCTCCACGATGTACTTAATTGATTATTTGTATCTCTACATACTTCTTGACA-GTCATGATTGCTCTTCAT
TCGTGAAAGTTCAGAAGTAGTGGGAGTAACCTCTGTATTTTAGCCATTTCATGACTTCCTTAGTTATATTTGTCAGTTGA
TGTTA-GCAGAATTCGTCAAGCAATCTGGGTGTTACGTTGAACAACCATAGTGAAGGG-TTTTACTGGAACTTAGTTGCA
GGTGTATGGTAATATCAATTGCATTTTCTTCCAAAGTTTTGCTTAGTTTCTCCTTCGCTGAAGCGTTTATGGCCACATAA
CAGCCATTATTGCATATACTCTAGGCATGGAGGAGGTGTCTGTTC-T---------------TCTTCTACTTTGCAACCG
GATTCATTTTGTTT---ACTAGTGTGGTCAAATTTAGTGTGCAACATCACAAACAGTGGGCAGCAATTATTTTCTATTCT
ACTTTTCAACCAAAAAACTAAATGCATAAATCGTTGAAGCCAAAAACATGTCATCTGTTGTGCCCCAACTAGTGTTCAGT
TAAACTACATTTTTTGGTGGTGTAGTATAGCTGTTGGATGGTCATA-CCATTTTGAGCGGTGGCCAGTTGTTGCCTTTTA
AGGTCATGAACCAACCGTTTGTACGTTTCTTTGACAATGCAAGTTTAGTGCATGGTTTGCAAGATCTTCTGATTTTGCTG
TGATAGCTTATGTGATCATTGATTGTTGAAAAGCGTAGCTCTCTCCCAGTCTCATCATTCTGCCAAATATCTCATTCTCA
TCTGATGCTATGATATGCAATTTCAGGTCTATTTCTTCCGGCGTTTGTTAGGCCAATGTTGGATTCTTGGGAGACTGAGA
AAAATGCCAAAACCCCAGTTGAACTAAAAGATGTAAGTTGATCCCCTCCACTTTTTATCCGTTTATGTGTGCTACCACTT
CATATAATTATGGAAATCGCTTTTATCATTTAGCCCTCTCAAATGTTCTAGCCACACCATTTATCATTTCCCAGTTTTAT
CATGTTCTTTGTGCACTAGCCAAGATATTGGCGAGTCAGTAAACTTACAAATTAAAGTTTGTACTCTAATGGGCTACAAA
CTCCTGGAAAAGAGTACCAAGGGCTCCTTTGTAAATGTGGAATCCCTCGACTCTGGTTGGAATTGAGCTATTTCCCATGA
AAATCCTGCTTTCCATACATGCCTTAAATAGTTGATTGGCAGATTTGACTGAATTGCACACAGTATCTTTTGAAACTCTG
CATAACACCTTCTGTCGTCAGTCACATGATTTATCATG-GTCCATCAGGCTATTTCCAGGTTATCATGCTTCTGAGTAAT
CATGCTGAAATATT---GTATCATTCCCCCTCTCTTTCATCCTAACTCTGCTTTTTTATTTACTGAGATGAGTTCACGCA
TGAGTGAGCATTATTGGCTCGGACAGTGTTTAACTTTTGTTCTCTTGGTACCTCCGCAGGTGGTCGCAGGTGTCACCGGC
AAGAAAGCTTAG--------------------------------------------------------------------
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>chr1D_1_TraesCS1D01G368800
CATGGCCTTTCTCTAGGTTGCTTCCAGGTTCTCCTCTTCCGTCCCAATAGTGGCTTCAGTGGCTGCACTGATGTTTGGCG
TGACCTTTTTGGGTAGAAGAAGCAGGTCTTCAAGATATCGCTCAGCAAACCTGAAAGTTGATAATGGCGAATGAAACTCT
TGTTCATGAATAGCTTTTCTACGAGCCCACCAGATTGACCACAGTGTCACGAGTATCCTCACAAACTCGTCTTCTCTTGT
TGTTTCCATCAGCTCCAGCAGCCATTGGCGAGCATCAACGTTTTGGCATGTGATCAAGTATTCAACCAGTTGGTCATCCA
TGAGAGCCCATACACATTTTGCCATGTTGCAGTCCACTAAAGCGTGCCGCCAAGAATCCTCCGCTCCGTTGCAGATCGGG
CAGACCGCC--------------------GTGTCGAACGGATTCTGTAGGGACAGAGTTCATAGCCAATCGCCAAGCAAA
ATGTTTCACTGCACTTGGAACCTTTACCCTCCAAAGAATCTTCCATTCCCC-TGAGTAGCAGACAAGTCCGACGTAGTTG
ACCGGCGCTCAAGCCAATCTTCTCTCCCTTCTTTTCGTGTCAAC----AGTCTGTGGGCCGAGCGGACGGAGAAGATACC
AACCCGCTCATAGTGCCACGCCCAACTGTCTGTAGCGTTCCTTGTGCTCAGCGGAGTCTT-CAGAACGACCTCCTCGTCC
GGAGGCTGCAAATGATCATTAACCTTTTGGAAATCCCAGGATTTTGTTGCAGCATCTATCAATTCACACACATATTCCAA
CTAGTCATTCGACCGACGTTGGGCTTTGGGCCTCTCTCTGTTACAGCGGGCGGGCGGGTGGCCCGGGTGG---TGGAAGG
AAGGAAGTTGGGCCTACGAGGTACGCATCTCTCTC-----TCACTCGGCCCCTCCCTCT--CCCATTCTGCCCAGTCCAC
TCACCCACCCGTGTCT------GTGTCCGGCGACGACGGCGAGGA---AGGAAGGGAAG------AAGGGGATCGCGGAG
CAGCAGCAGC---CATGGGCGTGATGGGCAGGCTCAAGATCTTCGTCGTCAAGGAGCCCGTCGTCGCCGCCTCCTGCCTC
ATCGCCGGATTCGGTAT----------CCCCTCCTCTCTCCCGCCCCAACCCTAGC-GCCCTGTGCCGGCCTACCCGTAC
GTGCGCGCCTCCTACCTG-TACCCTCCATTTCTCCATC----------------GCACCCCCGCCTGGCCAGGCTCCCAG
GATTTCCGAGGAGGGGGGATCGGTCCTCCGGTTGGAC---------GGACGCAGTGCATCGATGGGGCGGGCTCTCAACG
CTTCCATGTAGTTTTCGCCTGCTAATGTCTGTTGGATCTAGGATTATTCCAGACGCGCGCTTCCCCGCAAAATTTTTGCC
GCGTCATTCCGATCGTTCCGTGACTCATGATTCATGGGCTGTACACCTTAGACCTTGCATACATTTGCCCCTATCATCGA
TATAATGATTCAACCATTGCTACCCATCCATTCCATTCCAGCCAAAGGAAGAGTAGCAGTCCGCATTTCTTGTGGCACT-
TAAGTATTGTCGATTGATGATTCTACTGTATTCTTTCTGCTGGATTCGGTCAGAACAGGTGCGAGCTGATAAGGGTTGCT
CCGGGTTAATGTCAAAAATGTAGTCGTGTGCTGAGCTGCGCTACACTTTTCTGTTTTTATTTAGCGATAGATGTTCCCAA
AGATTTACTCCCTCGCCCTTATGCCTGTGTACCTATAGGCTATAGCCACAAGACCCACCTGTTGTTATGTCTATCCGTTC
ATGAAACTGAAATGTGACTAAAGATTAGCACATATGAGCTGACTACGTAGCGTTGGGTGGGTGACTTAGCTAGACCTTGC
GCGTTCATTTCCTTGGAAATC---GAGTCAGGCTATTTAACAGCTTAAACTT-------TGTTTGCCTGTCACATGTTGT
TTACTGCTTCAG---------AAAACCAGATCGCGTGTTTCACTGCTTAAGATTTAAAAGAGGACACATTTGGACTAGTC
TGCAAACAAGATTGGCTT---GGATTAAATTCCATGTTATTTTCTAGACCCTAATACTCTATTACTATCAATGTATACCA
CCTCACAGCTCCTCCACGATGTACTTAATTGATTATTTGTATCTCTACATACTTCTTGACA-GTCATGATTGCTCTTCAT
TCGTGAAAGTTCAGAAGTAGTGGGAGTAACCTCTGTATTTTAGCCATTTCATGACTTCCTTAGTTATATTTGTCAGTTGA
TGTTA-GCAGAATTCGTCAAGCAATCTGGGTGTTACGTTGAACAACCATAGTGAAGGG-TTTTACTGGAACTTAGTTGCA
GGTGTATGGTAATATCAATTGCATTTTCTTCCAAAGTTTTGCTTAGTTTCTCCTTCGCTGAAGCGTTTATGGCCACATAA
CAGCCATTATTGCATATACTCTAGGCATGGAGGAGGTGTCTGTTC-T---------------TCTTCTACTTTGCAACCG
GATTCATTTTGTTT---ACTAGTGTGGTCAAATTTAGTGTGCAACATCACAAACAGTGGGCAGCAATTATTTTCTATTCT
ACTTTTCAACCAAAAAACTAAATGCATAAATCGTTGAAGCCAAAAACATGTCATCTGTTGTGCCCCAACTAGTGTTCAGT
TAAACTACATTTTTTGGTGGTGTAGTATAGCTGTTGGATGGTCATA-CCATTTTGAGCGGTGGCCAGTTGTTGCCTTTTA
AGGTCATGAACCAACCGTTTGTACGTTTCTTTGACAATGCAAGTTTAGTGCATGGTTTGCAAGATCTTCTGATTTTGCTG
TGATAGCTTATGTGATCATTGATTGTTGAAAAGCGTAGCTCTCTCCCAGTCTCATCATTCTGCCAAATATCTCATTCTCA
TCTGATGCTATGATATGCAATTTCAGGTCTATTTCTTCCGGCGTTTGTTAGGCCAATGTTGGATTCTTGGGAGACTGAGA
AAAATGCCAAAACCCCAGTTGAACTAAAAGATGTAAGTTGATCCCCTCCACTTTTTATCCGTTTATGTGTGCTACCACTT
CATATAATTATGGAAATCGCTTTTATCATTTAGCCCTCTCAAATGTTCTAGCCACACCATTTATCATTTCCCAGTTTTAT
CATGTTCTTTGTGCACTAGCCAAGATATTGGCGAGTCAGTAAACTTACAAATTAAAGTTTGTACTCTAATGGGCTACAAA
CTCCTGGAAAAGAGTACCAAGGGCTCCTTTGTAAATGTGGAATCCCTCGACTCTGGTTGGAATTGAGCTATTTCCCATGA
AAATCCTGCTTTCCATACATGCCTTAAATAGTTGATTGGCAGATTTGACTGAATTGCACACAGTATCTTTTGAAACTCTG
CATAACACCTTCTGTCGTCAGTCACATGATTTATCATG-GTCCATCAGGCTATTTCCAGGTTATCATGCTTCTGAGTAAT
CATGCTGAAATATT---GTATCATTCCCCCTCTCTTTCATCCTAACTCTGCTTTTTTATTTACTGAGATGAGTTCACGCA
TGAGTGAGCATTATTGGCTCGGACAGTGTTTAACTTTTGTTCTCTTGGTACCTCCGCAGGTGGTCGCAGGTGTCACCGGC
AAGAAAGCTTAGTGATCAACGTCTCTTCGCTCTGCTGATGTTGTCTACACATTTTGTTCTGCTTGTTTTTGGTGCCCAGA
CGAGCGGGCTCTCTTCTGGGATTGTAATCGGA-TCGGCTGAAATAATCATTGTGTCTGGACCTATTTTGACCATAGTGCA
ATGAGATGGACCTGTTGTTTAAGGAGTGATTCCAAGTTGTAAGGAATGAATT-----GAAGGTCATTGTTACCCTTTTCA
TCGAATTCGTGCCATTTTTACTTGCTGTTC------TGTCTGGCCAAGGCAAAGAATGCTTGGCACCACGATTCCACCCC
TGTTCCGTTTAGGCGGCGGCGATGAACTTGGTGGACGTTGGTCCTGCTTCC--------TGCCTATTCCTCCGCAGGTAG
CAGCAGCCGGTGATGGTCTCATTGTTAATCTCCCATTTTTATGCACTCAGTCTTATAATTGCTGTGCCACAACCACTTTG
ACGGAGAGGTTGACGAAGATGTACGGAAGGAAAATCACGTACAGTATTTTTTTAAGGGAGAAAAATGAGGTTGCATTTTT
TTTCTTCTGAGAGATGGAAAACAAGGTTACATTTTTTTTTTGAGAAAAGCTTCCTCGGCCTTTATTGATTAGCTAAAATG
TTTGCGGGGATTACAATTGGGTCGTGCGGGATTAGCTAAAATGTTTGCAGGGCTTACAATTGGGTCATGCAGAGTACCCA
ACCACATATGCCTCCCGACAGGAAGAGAAACACCAAACCTAGGCAAACCTATGAGTCTCATAATTGAGTAAATTGCAGAA
AACCACCCGTTTGAAGGTTAGGTTTGCGAAAAACATTACAATACATTTTTTTTTTTGCAAAAAACACCATGTCTTCAATA
ATCTTTTTGCAAATAACACTGATCGGCGGATTTGGCTCCACTGAGCACGCTTATGACAGTTGGGGCCCTTTTTTTTGCCT
ACATGGCGTAACATTTCGTGCCAGATCACTTATATTCTGAATTTACAAACTAGCCCTTAGTTTTTACACAGA
>chr6D_1
CATGGCC-TTCTCTAGGTAGCTTCCAGGTTCTCCTCTTCCGTCCCA-TAGTGGCTTCAGTGGCTGCACTGATGTTTGGTG
TGACCTTTTTGGGTAGAAGAAGCAGGTCTTCAAGATATCGCTCAACAAACCTGAAAGTTGATAATGGCGAATGAAACTCT
TGTTCATGAATAGCTTTTCTACGAGCCCCCCATATTGACCACAGCGTCACGAGTATTCTCACAAACTCGTCTTCTCTTGT
TGTTTCCATCAGCTCCATCAGCCATAGGCGAGCATCATCGTTTTGGCATGTGATCAAGTATTCAACCAGTTGGTCATCCA
TGAGAGCCCATACACATTTTGCCATGTTGCAGTCCAGTAGAGCGGGCCGCCAAGAATCCTCCGCTCTGTTGCAGATCAGG
GAGACCGCCGTGTCAGCCATGTTGCGATGGTGTCGAACGGATTCTGTAGGGACAGAGTTCATAGCCAAACGCCAAGCAAA
ATGTTTCACTGCACTTGGAACCTTTACCCTCCAAAGAATCTTCCATTCCCCTTGAGTAGCAGACAAGTCCGACGTAGTTG
ACCGGCCCTCAAGCCAATTTTCTCT-CCTTCTTTTCGTGTCAACCAAAAGTCTGTAGGCCGAGCGGACGGAGAAGATACC
AGCCCGCTCGTAGTGCCACACCCAACTGTCTGTAGCGTTCCTTGTGCTCAGCGGAATCTT-CAGAACGACCTCTGCGTCC
AGAGGCTAAAAATGATCATTAACCTTATAGAAGTCCCAGGATTTTGTTGCAGCATCTATCAACTCGCACACATATTC---
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>chr7D_1
CATGGCC-TTCTCTAGGTTGCTTCCAGGTTCTCCTCTTCCGTCCCG-TAGTGGCTTCAATGGCTGCACTGATGTTTGGTG
TGACCTTTTTGGATAGAAGAAGCAGGTCTTCAACATATTGCTCAACAAACTTGAAAGTTGATAATAATGAATGAAACTCT
TGTTCGTGAATAGCTTTTCTACGAGCCCACCATATTGACCACAGCGTCACAAGTATTCTCACAAACTCATCTTCTCTTGT
TGTT-CCATCAGCTCCATCAGCCAAAGGCGAGCATCATCGCTTCGGCATGTGATCAAGTATTCAACCAGTTGGTCATCCA
TGAGAGCCCATACACATTTTGCCATGTTGCAGTCCAGTAGAGCGTGCCGCCAAGAATCCTCCGCTCCGTTGCAGATCAGG
CAGACCGCCGTGTCAGCCATGTTGCGATGGTGTCGAACTGATTCTGTAGGGGCAGAGTTCATAGCCAAACGCCAAGCAAA
ATGTTTCACTGCACTTGGAACCTTTACCCTCCAAAGAATCTTCCATTCTCCTTGAGTAGCAGACAAGTCCGACGTAGTTG
ACCGGCCCTCAAGCCAATCTTCTCT-CCTTCTTTTCGTGTCAACCAAAAGTCTGTAGGCCGAGCGGACGGAGAAGATACC
AGCCCGCTCATAGTGCCACACCCAACTGTCTGTAGCGTTCCTTGTGCTCAGCGGAATCTTTCAGAACGACCTCCGCGTTT
GGAGGCTGCAAATGATCATTAACTTTTTGGAAATCCCAGGATTTTGTTGCAGCATCTATCAATTCGCACACATATTCC--
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>chr5D_98
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-----------------AGGAGCAGGTCTCCAAGGTATTTCTCAACAAAGCAAAAGGTTGATAATGGAGATTGAAATTCT
TGCTCATGGATGGCTTTTCTATGCGCCCACCAGATGGACCATAGTGTCACTAGAATCCTCACGAACTCCTCTTCTCTGGT
TGTCTCCATCAGCTCCATCAACCATAGTCGGGCGTCGTCATTTTTGCATGCAACCATGTGTTCAACCAGTTGATCATCCA
TTAGAGCCCATACACATTTAGGCATGTTGCAATCCACAAGAGCCTGTCGCCAGGAGTCCTCCGCCCCATTGCATATAGGG
CATAATGCTTCATCAGTCATCTTGCGGTGGTGTCGAACAGATTCTGTAGGTACAGAATTCTTGGCCAGGCGCCAAGCAAA
ATGTCTCACCACACTAGGAACTTTTACTCTCCAAAGCTTCTTCCATTGCCCCTGGGTAGCAGACACATCAGACGTATTAG
GCCGTCCCTCTAGCCAATCTTCTCT-CCTCCTCTTCGTGTCAACCAAAAGTCTGTACGCAGAGCGGACAGTGAAGAGACC
AGACCGCTCATAGTGCCACGCCCAACTGTCTGCTATGTTCCGTGTGCTCAACGGAATCTT-CAGAATCAATTCAGCGTCC
GGAGGCTGCAGATGTTCATGAACTTTCTGGTGATCCCAAGCCTTTGTCGCTGCATCAATCAGTTCACTCACATA------
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>chr1A_782
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-------TTCGACCCAAGTTGGGCTTTGGGCCTCTCGCTGTTACAGCGGGCGGGCGGGCGGCCCGGGTGGTGGTGGAAGG
AAGGAAGTTGGGCCTACGAGGTACGCATCTCTCTC-----TCACTCAGCCCCTCCCTCT--CCCATTCTGCCCAGTCCAC
CCACCCACCCGTGTCT------GCGTCCGGCGACGACGGCGAGGA---ACCAAGGAAAG----GAAAGGGGATCGCGGAG
CAGCAGCAGCAGCCATGGGCGTGATGGGCAGGCTCAAGATCTTCGTCGTCAAGGAGCCCGTCGTCGCCGCCTCCTGCCTC
ATCGCCGGATTCGGTAC---------------CCCCTCTCCCGCCCCAACCCTAGC-ATCCTATGCCCACCAACCCGTAC
GCGCCCCCGCGCGCATCGCTAGCCTCCATTTCTCCTCGCGTGCGTTCCTCCTGAGCACCCCCGCCCGGCCAGGTCCCCAG
GATTTCGCAGGAC-GGGGATCGGTCCTCCGGTTGGAC---------GGACGGA-TGGATGGATGGGGCGGGCCCTGAGCG
CTTCCATGTGGTTTTCGCCTGCTAAACTCTGTTGGATCTATACACCTTAGACCTTGCATCGCAGTTTTG-----------
--------CCGCTCGATCCGTGACTCATGATTCATGAGCTATACACCTTAGACCTTGCATACATTTGCCCCTATCATCAG
TATAATGATTCAACCATTGCTACCCATCCATTCCATTCCAGCCAAAGGAAGAGTACTAGTATGCATTTCTTGTGGTCATA
TAAGTATTGTTGATTGATGATTCGACTGTATTCTTCCTGCTAGATTTGGTCAGAACAGGTGCGGGCTGATAAGGGTTGCT
CGGGGTTAATGCCAAAAACGTAGTCGTGTGCTGAGTTGCGCTACACTTTTCTGTTTTTATTTACCAATACATGTCCCCAA
AGATTTACTCCATCACCCTTATGCCTGTGTACCTATAGGCTACAGCCACAAGGCCCGCCTGTTGTTATGCCTATCCATTC
ATGAAACTGAAATGTGACTACAGATTGGCACATACGAGCTGACTACCTAGCGTTGGGTGC-TGACTTAGCTAGACCATGT
GCGTTCATTTCCTTGGAAACT---GAATCACACTTTCTCACAGCTTAAACTT-------TGTTT----------------
--ACTGCTTAAG---------AAAACCAGATTGTGTCTTTAACTGTTTAAGATATGAA-----ACACATTTGGACTAG-C
TGCAAACAAGATTGGCTTAATGTCTCGAATTCAATGTTATTTCCTAGACCATATTACTATCAGTGTACA-----------
--------------CCCGATGTACTTCATTGATTATTTGTATCCTCT-ATACTTCTTGACA-TTCATGATTGCTGTTCAT
TCATCAAAGTTCAGAAGTAGTGTGAGTTACCTCTGTATTTTAGCCATGTCATGATTTCCTTAGTTATACTTGTCAGTTGA
TCTTAAGCAGAATTTTTCCAGCAATCTGTGTGTTAAATTGAACAACCATAGTGAAGGG-TTTTACTGGAACTTAGTTGGA
GGTGTACGGTAATATCAATTGCATTTTCTTCCAAGTGTTTGCTTAGTTTCTCCTTCATTGAAGTGTTTATGACCGCATGA
CAGCCATTATTGCATATACTCTAT-----------GTGTCTGTTCTT---------------TTTTCCCCTTTGCAATAG
GATTCATTTTGTTTACAACTAGTGTGGTCAAATTTAGTGTGAAACATCACAAACAGTGGGCAGCAATTATTTTGTATTCT
ACTTTTCAACCAAAAAACTAAGTGCATAAATTGTCGAAACCAAAAACATTTCGTCTGTTGTGCCACAACTAGTGTTTAAT
CAAACTGCATGCTTTGGTGGTGTAGTATAGCTGTTGGATGGGCATAACCATTCTGAGCAGTGGGCAGTTGTAGCCTTTTA
AGGTCATGAACCAACCGTTTGCATGTTTCTCTGACAGTGCAAATTTAGTGCATGGTTTGTAAGATCTTCTGATTTGGCTG
TGATAGCTTATGTGATCAT------------------------------------------------------------A
TCTGATGCTATGATATGCAATTTCAGGTCTATTTCTTCCAGCGGTTGTTAGGCCAATGTTGGATTCTTGGGAGACTGAGA
AAAATGCCAAAACCCCGGTTGAACTAAAAGATGTATGTTGATCCCCTACAATTTTTATTCGTTTCTGTGTGCTACCACTT
CATATAATTATGAAAATCGCTTTTATCACTTAGCCCTCTCAAATGTTCTAGCCACACCATTTATCATTTCCCAGTTTTAT
CATGTTCTTTGTGCACTAACCAAGATATTGGCGAGTCAGTAAACTTACAAATTAAAGTTTGTATTGTAATGAGTTACAAA
CTCCTGGAAAAGAGTACCAAGGTCTCCTTTGTAAATGTGGAATC------CTCTGGTTGGAATTGAGCTCTTTCCCATGA
AAATCCTGCTTTCCAGACATGCCTTAAATAGCTGATTCACAGATTTGGCTGAATTGCACAGGGTATCTTTTGAAACCCTG
CATCACACCTTTTGTTGTCAGTCACATGATTTGTCATG-GTCCATCGGACCATTTCCAGGTTCTCATGCTTCTGAATAAT
CAGGCTGAAATATT---GGATCATTACCCCTGTCTTTCCTCCAAACTGTGCCTTTTTATTTACTGAGATGAGTTCGTGTA
TGAGTGAGCGTTATCGACTAAGACAAGGTTTAACTTTTGTTCTCTTGGTACTTCCTCAGGTGGTCGCAGGGGTCACTGGC
AAGAAAGCTTAGTGATCAACGTCTCTTCACTCTGCTGATGTTGTCTACACATTTTGTTCCGCCTGTTTTTGGTGCCCAGA
CGAGGGGGCTCTCTTCTGGGATGTAGTCGGATCTCGGCCAAAATAATCATTGTGTCTGAACCTATTTTTACCATAGTGCA
ATGAGATGGACTTGTTGTTTC---AGTGATTCCAAGTTGTAAGAAAGTGAATGCATGGAAGGCCGTTGTTACCCTTTTGA
TCGAATGCGTGCCATTGTCACT---TGTTCTTGATTTGTCTGGCCAAGGCAAAGAATGCTTGGCACCATGACTCCACCCC
TGTTCCGTTTAGGCGGCGGCGATGAACTTGGTGGACGTTGGTCCTCCTTCCATAGCCATTGCCTATTCCTCCGCAGGTAG
CAGCAGCTGGTGATTGTCTCGTCGTTAATCTCCCATTTTTATACACTC----TTATGATTGACGTGCTGGAACCACTTTG
ACAGAGAGGTTG--------------------------------------------------------------------
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>chr1B_858
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------GTTGGGCCTACGAGGCACGCGCCTCTCTCCTCACTCGCTCGGCCCCTCCCTCTCCCCCATTCTACCCAGTCCAC
TCACCCACCCGTGCCCGTGCCCGTGCCCGGCGACGACGGCGAGGAGGAACCAAGGAAGAGAAAGAAAGGGGATCGCGGAG
CAGCAGC------CATGGGCGTGATGGGCAGGCTCAAGATCTTCGTCGTCAAGGAGCCCGTCGTCGCCGCCTCCTGCCTC
ATCGCCGGATTCGGTACCCCCGCCGCGCCCCTCCCCTCTCCCACCCATACCCTTGGTGCCCCGTGCAGACCTACCTGTAC
GCGCGCGCGCGCGCATCGCTCGCCTTCATTTCTCCTCGCGCGAGTTTGCCTAGAT------------------------G
GATTTCTGAGGAGGGGCGGGGGGATTGGCCCTCGAGGATAGATCGTGGACGGA-TGGCGACGCG----------------
--TCCATGCGTTCTCGGCCTGCCAATGTTCGTTAGATCTAGGATTCTCGCTGTCCCGCGGATGCGTGCCCCCGTCGCA--
-----------------------------ATTCATGGGCGATACATTTACATGCGCCGCATAC-----------------
-ATAAAGATCCAACTACTGCTA-------------TGCTATCCAACCAAATAGTAGCAGGCAGGGGCCAAGGACGCTTCG
ATGTCTTCTACATTCATCAGCGTCAATATCAATGACATTTGCACACATCAACTGTGCCTCTGGGACTC------------
--------ATGTCAAAATGTACT---TGTGCTGAGCTGCGCTATAGTACTATTTATTTTGACTTAACTCTGG-------A
AGATTTACTCCGTCTTGTACGTATAGCGACCAACTATACACCATTT-ACCAGACACGCCTTCTGCTATTTCTGTCCATTG
ATGG------AATGTGACTACAGCTTGGCACATATGAGCTGACTATTTAGCACTGG--GGGTGACTTAGCTAGACTATGT
GCAACCGCTTCCTTGGGAACTGGTGAATCAGACTATTTCTTTCACAATTTACACTTGGCTGTTTGCATGCGACATGTTGT
TTACTGCTTAATATGAGGAAAAAAAACAGATCGGATCTTTAACTGTTTAATATTTGCTTTA-------------------
-----------------T---GTGTTAGATTCCATCTTATCCAATAGACGAGTAGACCCTATTACTACCAGATTATGACA
CCTCACAGCTCCACCCCGATGTATGTCATTAGTTGTTTGTATCTCTATACGTCTCGATATCGGTCATGATTGCTGTTCGT
TCGTTAAA-TTCATAATTGATGAGAGTTACCTCTGTATTTTATCCATGTCATGACTTCCTTAGTTATATTTGTCAGTTGA
TCTTA-GCGGAATTTGTCCAGCAATCTGTGTGTTAAATTGAACAGCCATAGTTGAAGCATTTTACTGGAACTTAGTTGCA
GGTGTACGGTAATATCAGTTCCTTTTTCTTCCAAGGGTTTGCTTAGTTTCTCCTTCATTGAAGCCTTCATGACCACATAA
CAGCCATTGTTGCATATGCTCTAGGCGTGGAGGAGGTGTCTGTTC-TTCATTTTTCTTCTTCTCTTCTTCTTTGCAACCG
GATTCATTTTGTTTAGAACTAGTGTGGTCAAATTTAGTGTGCTGCATCACAAACAGTGGGCAGCAATTATTTTCGATTCT
ACTTTTCAACCAAAAAGCTAAACGCATAAATCCTCGAAACCAAAAACATGTCGTCTGTTGTGCCCCAACTAGTATTTAGT
CAAACTGCATGCTTTTGTGGTGCAGTATATCTGTTGGATGGGCATAACCATTTTGAGTAGTGGGCAGTTGTTACGCTTTA
AGGTCATGAACCAACCATTCACACGTTTCTCTGACAGTGCAAGTTTAGTGCATGGTTTGTAAGATCTACTGATTTGGCTG
TGATAGCTTATGTGATCATTGATCGTTGAAAAGCGTAGCTCCCTCCCAGTCTCATCATTCTGCTAAATATCTC------A
TCTGATGCTATGATATGCAATTTCAGGTCTATTTCTTCCAGCGGTTGTTAGGCCAATGTTGGATTCTTGGGAGACTGAGA
AAAATGCCAAAACCCCAGTTGAACTAAAAGATGTATGTTGATCCCCTCCACTTTTTATTCGTTTCTCTGTGCTACCACTT
CATATAATTACGAAAATCGCATTTATCATTTAGCCCTCTCAAATGTTCTAGCCACACCATTTATCATTTCCCAGTTTTAT
CATGTTCTTTGTGCACTAGCCAAGATATTGGCGAGTCAGTAAACTTACAAATTAAAGTTTGTGCTCTAATGGGCTACAAA
CTCCTGGAAAAGAGTACCAAGGGCTCCTTTGTAAATGTGGAATCCCTCGACTCTGGTTGGAATTGAGCTATGTCCCATGA
AAATCCTGCTTTCCAGACATGGCTTAAATAGTTGATTGACAGATTTGACTGAATTGCACACGGTATCTTTTGAAACTCTG
CATCACACCTTCTGTTGCCAGTCACATGATTTGTCATTTGTCCATCGGACCATTTCCAGGTTCTCATGCTTCTGAGTAAT
CATGCTGAAATATTGTAGTATCAATCCCCCTCTCTTTCATCCAAACTGTGCTTTTTTATTTACTGAGATGAGTTCGTGCA
TGCGTGAGCGTTATCCACTCAGAC---GTTTAACTTTTGTTCTCTTGGTACTTCCGCAGGTGGTCGCAGGTGTCACTGGC
AAGAAAGCTTAGTGATCAACGTCTCTTCACTCTGCTGATGTTGTCTACACATTTTGTTCCGCCTGTTTTTGGTGCCCAGA
CGAGG---------------ATGTAGTCGGATCTCGGCCAAAATAATCATTGTGTCTGAACCTATTTTGACCATAGTGCA
ATGAGATGGACTTGTTGTTT---GAGTGGTTCCAAGTTGTAAGAAAGTGAATGCATGGAAGGCCGTTGTTACCCTTTTGA
TCGAATTTGTGCCATTGTCACTCGTTGTTCTTGATTTGTCTGGCCAAGGCAAAGAATGCTTGGCACTGCGGCTCCACCCC
TGTTCCGT------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>SNPs
-------S--------------------------------------S-------------------------------S-
--------------------------------------------S-----------------------------------
--------------------------------------------------------------------------------
-----------------S-------S-----------S------------------------------------------
---------------------------------------S----------------------------------------
--------------------------------------------------------------------S-----------
--------------------------------------------------------------------------------
------S------------------S-----------------------------S------------------------
-S-----------------------------------------------------S------------------S-----
------------------------------------------------------------------------------SS
SSSSSSS-------S-S-------------------S---------------------S---------------------
--------------------------------------------------------------------------------
-------------------------------------------------SS----S------------------------
--------------------------------------------------------------------------------
----------------S-----------------S---------------------------------S-----------
-S------SSS-SSSSS----S-------------SSS---------------------------S-------SS-----
------S--------------------------------------------S-S--S--S------------S--S-S--
---------S-----------------------------------S--S---S-S-----S-S-SS--SSSSS-SSSSSS
SSSSSSSS---S---S------------------------S-------------------------------------SS
-------------------------------------------------------------S--------------SS--
-----------------------S-----------S-----S----S----------------S----------------
-S----------------S--------------------------------------------S-S---S----S-----
-----------S--S---------------------------S-------------S-------------------S---
--------------------S-----S-------------------S-----------------------------S--S
-------------------SS-----S----S------S---------------------------S--SS---------
---------S-----------------------S--S---S----S---------S--SS-SS---------------S-
----------------------SS------------------S-------S----------------S--SSS---SS--
------------S--S----------S--------------------S--------------------------S-----
----S-----------------S----S-------------------S--------------------------------
-S------------S---S---------S------SS-------------------------------------------
------S---------------------------S-S-------------------SS-------------S--------
--------------------------S-----------------------------------------S-----------
--------------------------------------------------------------------------------
----------------------------------S---S-------------S-----------------------S---
S-----S---SS-----------------------------S----------------S----S----------------
---------------------S--------S-----S----------------------S---------------S----
-----------------------S-----------------S---------------------S---------SSSSSS-
---------------------------------------S---S------------------------------------
-----------------------------------S----------------------S-----S---------------
------------S-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------S----------------------S----------------------S------------------
---S-----------S----------------S-------------S-S-S-----------S-----------------
------------------------------------------S----S---------------------------SS---
---------S----S-S---S----SS------------------------S------------------------S---
----------------------------S------------------------------S--S-----------------
----S-----------------SSSSSSS-SS------SS------------------S---------------------
-----------S--------SSS--------------------S--SSS-S-----------S-S-------------S-
----------------S-S---S-S----------------------------------------------S--------
---------------------------------------------S----------------------------------
-------S------S-----S-S-------------------S-----SSSS----S----SS----SSS----------
--S---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_642
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------GCGGACGGAGAAGATACC
AA------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------------------------------------------------------------------------
>reverse_1699
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TGTAGTCGTGTGCTGAGCTG------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>forward_1445
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------CGCAAAATTTTTGCC
GCGTC---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>reverse_2457
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------GCTGAAGCGTTTATGGCCAC----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>forward_2046
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------CAGATCGCGTGTTTCACTGC----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------------------------------------------------------------------------
>reverse_3765
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----CGGGCTCTCTTCTGGGATTG--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
