>input_sequence_31063
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-------------------ATGCAGGCGACGGCCGCATCCTTCCTCGCCCGCCCCCTCCCGTGGCCCCGTCGGTGAGCAC
AGCCTTAAACCCCCTGACTCCTTGATCCAGGTCTCTTTCTTTTCTGGCGTTCTGACTAGGCCCTGTGCCTGTGATTCTGT
TGGGTGCAGCATTGGCAGGAGCGCGTATGGGGCGGTGGAGGTGCGCGGAGGCGTCTCGCCGCTGCCGCCGCGGCTGCGGG
CGGTACGGTGCTCTATGAGCCTCTCTATCGGCGCCGGTTCGAGCGACATCGGAGACAGCGGATTCAGCTACCGTAAGATA
GCTATTCGAACCCTAGCTCCCATATGAATGCCTTCGCTGATTTATTTTCGGAGGATATAGGATTGGATGGTACTGTAGGT
ATCTGCACAGAAAAAAAGAGAGGATGCCATGGTACTGTAGGTGGCCTTTGCGTTGCTGGTGCACGAGGCAAGGAATAATA
TGTGTGGGCTGTGCACAATTGAGTTGTCTTTCTGTTGGTTAGTACCTGATAATGTTAATTGGTGGTGTCCTGCGCATAAG
TTGCATTGTGATCGTGAGGAAGCTTGGAGTTGCAACAATGTGTGCAAACGATGCAGATTTAGAGGAATGTTTATTGATTA
TTAGAAGCTTTTCACTACATAATTTAGAGAGGAGAGATTCATATGCATTATGGGGACAATTTAGAGTCATAAGGAAAGAG
CATCAGTGACGAACACAGAATGCAGTTGC------TGGTTCAGTACTATATCTTTGTTATCCTGTGGATCGATCAAACTA
ATGGA-CCATGTTTTTCTCGCAGTGTGCAGTTGGCTGAAATAGTAGTTAGTATTCTAGTTACAGAGAACTAAAATGATTT
GTTTCTATTTCATTGTTGACTTGCTGCCGTATACAACTATACATAATTACATACTGTCAGCAACCAAAGACTTGGGATTT
ATTACAATTTATGAAGCCCCGATAAACCTGTTTTATAATTATCATCAGTAACAAAACTAAATACAGTCTGCAGCTCTGCT
CACAAGTAATATTTTCTTCTTGAATGTTGACATGAAAAGCAAATTTGTAGGTAGAAAATTTTCATTCGTTTAGCTGTTAT
AGCTTGTGTCGATTTGTATTTATCTGTTTCCACAGTTCTTCTTCTTGCAACTCTCAGTTGTTATTCTCATTGATAAGAAT
GCCCAGAGTCATATGCTCCATCCTTTGTGTTTATCTGAGGACCTTATGAGCAAAGTGTATGTGTATCTCTGCAGAGTATG
CTCCGGTCTTCCGAAGATACCGTGAGCGGGATCCCTACAAGCTTCTTGGTGTTGACCGTGATGCATCTGAAGAAGAGATC
AGAAGTGCAAAAGACTTCCTAGTTCAACAGTATGCTGGTCACGAAGCAAGTGAAGAAGCTATTGAAGGTGCTTATGAAAA
GATAATAATGAAGAGCTACCAGCATAGGAAGAAAACGAAAATTAATCTGAAAACCAAGCTTTTAAAGCGAGTCGAGGAAT
CCCCGTCATGGGTAAAGGCATTTCTTGGATACTTTGAGGTGCCATCAATGGATATTATTTCCAAAAGATTATTCTTTTTT
GCTTTCATCGCTGGGTGGAGCATAGCAACTTCTGCTGAGAATGGACCTGCATTCCAGGTATATGCTTTGATTATCCTGAC
CTTTGAAAGGTCTGTCTTTTCTTGTTTGGTGACATGTTTCAGTCCTGTGGTTGCCTGTGGAGATTAACCTAAAAAACATG
ACACATAACTTGTTGATTTCAC-AAGGACCAAGTTGAGTGCCATTAAGTTCTAACCAATCACCAGCTATAAACTCACAAT
CCACAATGCTTGCCCTGTGCGTCTGTCTACCCTTATTTCTGTATGACAGCTGAGAATTCAATAGCAATGGGAATGCAAGG
CCTGATAAGTCCTAGACTTGGATATTTACTTATTACTCCCTCCGTTCCATAATATAGCGCATATAGATTTTCTACAAAGT
CAAACTTTATAAATTTTGACCAAGTTTATAGAGAAAACTATTTATATCTACAATACCAAATGTATATAATATGAAAGTAT
GTCTTGTGATGTATCTAAGCATACGTATTTGGTATTCTAGATGTATATGATTTTCTCTACAAAATTGGTCAAAGTTTATA
AAGTTTGACTTTTAGAAAAATCTATATGCGCTACATTGTGGAACAGAGGGAGTATAAGTTAGAAGAGCTTCCCAGCTTAG
-------GGATCACTGTATTGACATGTAGTTTACCTTCTCTGCAGCTTGCAATATCACTCTTCTCGTGCATATACTTCCT
TAATGACAAGATGAAGAACCTTCTGAGAGCATCAACTACTGGGTTAGCGAAATTTCTT-AGCGAATGCCTTGACTTTTTA
TCCATAGCATGTTTGCTCACGCA-TGTGTTCTTCCAGGTTTGGAGTACTTGTTGGTGGCTGGATTGTTGGTTCTATGTTG
GTCCCTCTTATCCCAACATTTATCATCCCACCTACATGGTCGCTTGAGCTTCTTACCTCCTTGGTTGCATATGTTTTCTT
GTTTCTGGGGAGCACTTACCTCAAATGA----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>chr5A_1_TraesCS5A01G199900
GTAAAGGTTTTTTTTAAGTTGCACAAATTCAAAATCTATTCCAGCATCAGTGAAAATTACTACTCTTACCTTAAAGAAAC
TAGCTGATTGCTCGTGCGTTTTCCAATGAGGGCATACATATTCTAATGACACAAATCATGTCTGACATACTCCCTCCGTC
CGTTAAAGAGTGTACGTTTGACTTTAAAATTTGTTCACAAAAGAGTGTACTTCTAGCTTCCCAATGCACATTAAAGTAGA
AAAAAAATATTTCTCTCTCATCACAAGGTAATCAATACCAATGACAATTTACACATGGTCTTCTTAATTTCTACATGCAC
TTAGCTCATTGGGGGTTAGGTAATTAAAGAGAAAAAAGATAGTAGCTTGCACCTTTCCAATGTATTTTTTTACTTAATAT
CATAATTTGTCCTAAAATTTCTAGATGTACACTCTTCACCGGACGGAGGGAGTATCCCTTACA--ACCACCATATTCTAA
TGCAACAAGTGATTTTATTTTATTTGATCGAGTAAATGCAAACAATTTGACTGGATTTGATTGCATTTCTCCGACATATA
GTTAGTATGATTTGATATATTTTTTATGAGTAGTATGATTTGCTTTGTTTGGATTGAGTTAATGCAATTATTTTACATCC
ACCAA----------CAAAAGATTTGATTTGATTTGATTGAGTTAA-----------TGAGGGATGCTTCACGCCTTCAC
CAATGGATGTAGGACTACCAACAACTTCACCAATGGAAT-ATCCTTAAAAACAACCCAAATCAACTTTTTTTTTGAGAA-
----------------------------------AACCCAAATCAACTCAAAAATGGAAAAGGAAGTGAACAAAGCCCGG
CCCACTAAAGTCCGTAGGCAGCAAAGCCAGCCTCACAGGCCCATCACCTGCCTGCCTACCCCCTCCCCTTCTGCGTCTCG
TCTTTCTATCCAATCCCATCTCCTTCCCTCCTACGGCGGTCTGCTTCGCCCGCGACCACCTCGCCGCCGCATCCCTCTCA
ACCACCGCCGGCGTCGGAGATGCAGGCGACGGCCGCATCCTTCCTCGCCCGCCCCCTCCCGTGGCCCCGTCGGTGAGCAC
AGCCTTAAACCCCCTGACTCCTTGATCCAGGTCTCTTTCTTTTCTGGCGTTCTGACTAGGCCCTGTGCCTGTGATTCTGT
TGGGTGCAGCATTGGCAGGAGCGCGTATGGGGCGGTGGAGGTGCGCGGAGGCGTCTCGCCGCTGCCGCCGCGGCTGCGGG
CGGTACGGTGCTCTATGAGCCTCTCTATCGGCGCCGGTTCGAGCGACATCGGAGACAGCGGATTCAGCTACCGTAAGATA
GCTATTCGAACCCTAGCTCCCATATGAATGCCTTCGCTGATTTATTTTCGGAGGATATAGGATTGGATGGTACTGTAGGT
ATCTGCACAGAAAAAAAGAGAGGATGCCATGGTACTGTAGGTGGCCTTTGCGTTGCTGGTGCACGAGGCAAGGAATAATA
TGTGTGGGCTGTGCACAATTGAGTTGTCTTTCTGTTGGTTAGTACCTGATAATGTTAATTGGTGGTGTCCTGCGCATAAG
TTGCATTGTGATCGTGAGGAAGCTTGGAGTTGCAACAATGTGTGCAAACGATGCAGATTTAGAGGAATGTTTATTGATTA
TTAGAAGCTTTTCACTACATAATTTAGAGAGGAGAGATTCATATGCATTATGGGGACAATTTAGAGTCATAAGGAAAGAG
CATCAGTGACGAACACAGAATGCAGTTGC------TGGTTCAGTACTATATCTTTGTTATCCTGTGGATCGATCAAACTA
ATGGA-CCATGTTTTTCTCGCAGTGTGCAGTTGGCTGAAATAGTAGTTAGTATTCTAGTTACAGAGAACTAAAATGATTT
GTTTCTATTTCATTGTTGACTTGCTGCCGTATACAACTATACATAATTACATACTGTCAGCAACCAAAGACTTGGGATTT
ATTACAATTTATGAAGCCCCGATAAACCTGTTTTATAATTATCATCAGTAACAAAACTAAATACAGTCTGCAGCTCTGCT
CACAAGTAATATTTTCTTCTTGAATGTTGACATGAAAAGCAAATTTGTAGGTAGAAAATTTTCATTCGTTTAGCTGTTAT
AGCTTGTGTCGATTTGTATTTATCTGTTTCCACAGTTCTTCTTCTTGCAACTCTCAGTTGTTATTCTCATTGATAAGAAT
GCCCAGAGTCATATGCTCCATCCTTTGTGTTTATCTGAGGACCTTATGAGCAAAGTGTATGTGTATCTCTGCAGAGTATG
CTCCGGTCTTCCGAAGATACCGTGAGCGGGATCCCTACAAGCTTCTTGGTGTTGACCGTGATGCATCTGAAGAAGAGATC
AGAAGTGCAAAAGACTTCCTAGTTCAACAGTATGCTGGTCACGAAGCAAGTGAAGAAGCTATTGAAGGTGCTTATGAAAA
GATAATAATGAAGAGCTACCAGCATAGGAAGAAAACGAAAATTAATCTGAAAACCAAGCTTTTAAAGCGAGTCGAGGAAT
CCCCGTCATGGGTAAAGGCATTTCTTGGATACTTTGAGGTGCCATCAATGGATATTATTTCCAAAAGATTATTCTTTTTT
GCTTTCATCGCTGGGTGGAGCATAGCAACTTCTGCTGAGAATGGACCTGCATTCCAGGTATATGCTTTGATTATCCTGAC
CTTTGAAAGGTCTGTCTTTTCTTGTTTGGTGACATGTTTCAGTCCTGTGGTTGCCTGTGGAGATTAACCTAAAAAACATG
ACACATAACTTGTTGATTTCAC-AAGGACCAAGTTGAGTGCCATTAAGTTCTAACCAATCACCAGCTATAAACTCACAAT
CCACAATGCTTGCCCTGTGCGTCTGTCTACCCTTATTTCTGTATGACAGCTGAGAATTCAATAGCAATGGGAATGCAAGG
CCTGATAAGTCCTAGACTTGGATATTTACTTATTACTCCCTCCGTTCCATAATATAGCGCATATAGATTTTCTACAAAGT
CAAACTTTATAAATTTTGACCAAGTTTATAGAGAAAACTATTTATATCTACAATACCAAATGTATATAATATGAAAGTAT
GTCTTGTGATGTATCTAAGCATACGTATTTGGTATTCTAGATGTATATGATTTTCTCTACAAAATTGGTCAAAGTTTATA
AAGTTTGACTTTTAGAAAAATCTATATGCGCTACATTGTGGAACAGAGGGAGTATAAGTTAGAAGAGCTTCCCAGCTTAG
-------GGATCACTGTATTGACATGTAGTTTACCTTCTCTGCAGCTTGCAATATCACTCTTCTCGTGCATATACTTCCT
TAATGACAAGATGAAGAACCTTCTGAGAGCATCAACTACTGGGTTAGCGAAATTTCTT-AGCGAATGCCTTGACTTTTTA
TCCATAGCATGTTTGCTCACGCA-TGTGTTCTTCCAGGTTTGGAGTACTTGTTGGTGGCTGGATTGTTGGTTCTATGTTG
GTCCCTCTTATCCCAACATTTATCATCCCACCTACATGGTCGCTTGAGCTTCTTACCTCCTTGGTTGCATATGTTTTCTT
GTTTCTGGGGAGCACTTACCTCAAATGAAGCAACGTCAATCTTGTAACCGTAAATTGTAGTATTGTTTGGAAAATTTTGG
CAGTTACTGAAATCTCTACAATTGCATGTACCGGCAATGTTGTTGAATCCTTCGTCCTTCGTCTCAGCTCAGGATAGAGA
CAACCGGCGAAGCCAGGTGCTTTGTTTACACCAGTTGTCCACTCATTTGTTTAATTAATTGTCCATATAGGGGGCTGTTC
TTCGCTTCGCTGGTCCAAGTGAATCGCTGTATGGATCACCTGCTGAAGCTTAGGCACAGGGTCATGTCAGATTGTTAACT
CATACGGAATGTACTATTTACATATTGATATTGATGTGGAAATGATGTAGCGAAATTTTTGCGTCTTACGTAATGCTGTT
GCAACTTGCAAGAAGCATCAAAG--TCGCAAATGTTATGGCAAGAATATCCCCAAAATGTTCTGGGGATAAGCCTGCC-G
ATGTTAGATTTCCTCCAGCATGGTTTCAAAACTGTTGGGTGCACTTTTTGGAATTTCAAAAACATTATTTTGATAATGTC
ACGACATAGACTCTAAACCTATTGATGATTAAGTTAAGTATTTGTATACCTGCTAAGATGAAAAATAAGATGAGCATCAT
ATGTTATAATTCTAGATAGATAC-TTCCAAATGACTGAGCAAAACCGATCTGGACTTGTTGTGGCTGCTTTCTATATATC
ATCACATTTTTCTTATAAAAACAGAGTTGGTGATGATGGTGTACCTGTCATCCTGTAATATAGGCCATCTGATTTATATC
CGACGGATAGAAAGGAAACTATGGCAATTTTGTAAAAGAATACCCACATCCCTCTTCATATTTGCAAATAAGGCATTTCC
TCGTTCATTCTTTTTCTCGCACAAGATAAACTACTCATACAAATGTATCTTGATCTTCCGTGCAACGCATGGGCATTTTG
CTAGTCACGTCACATTTGATATTTCTCAGTTGCCTCATAAGTCATAACATAATTTGTGTCAGTCGATTTGCA
>chr5D_453
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------TATCCCTTACAGGACCACCGTATTCTAA
TGCAAGAAGT-----TATTTTATTTGATTGAGTTAATACAAACGATTTGA-----TTTGATTGTCCTTGTCCGTCATATA
GCTAGTATGATTTGATT--TTTTTTATGAGTAGTATGATTTG----------ATTGAATTAATGCAATTACCTTACACCA
TCAACGGTGGCATCGCAAAAGATTTGATTTGATTTGATTGAGTTAACGCACTACATGTGAGTGAGGCTTCACGACA----
---------TAGGACCACAAACAACTTCACCAAATGGAACATCCTTAGAAACAACCCAAATCAACTTTTTTTTTGAGACA
TACAACCCAAATCAACTCTTTTTTTTAGGTGTACAACCCAAATCAACTC-AAAATGAAAAAGGAAGTGAACAAAGCCCGG
CCCACTAAAGTCCGTAGGTAGCAAAGCCAGCCTCACAGGCCCATCACCTGCCTGCCTACCTCCTCCCCTTCTCCGTCTCG
TCTTTCTATCCAATCCCATCTCCTTCCCTCCCACGGCGGTCTGCCTCGCCCGCGACCACCTCGCCGCCGCATCCCTCTCA
ACCACCGCCGGCGTCGGAGATGCAGGCGACGGCCGCATCCTTCCTCGCCCGCCCTCTCCCGTGGCCCCGTCGGTGAGCAC
AGTCTCAAACCCCCTGACTCCTTGATCCAGGTCTCTTTCTTTTCTGGCGTTCTGACTAGGCCCTCTGCCTGTGATTCTGT
TGGGTGCAGCATTGGCAGGAGCGCGTATGGGGCGGTGGCGGTGCACGGAGGCGTCTCGCCGTTGCCACCACGGCTGCGGG
GGGTACGGTGCTCCATGAGCCTCTCTATCGGCGCCGGTTCGAGCGACATCGGAGACAGCGGATTCAGCTACCGTAAGATA
GCTATTCAAACCCTAGCTCCCATGTGAATGCCTTCGCTGATTTATTTGTGGGGGATATAGGATTGGATGGTACTGTAGGT
ATCCG--CAGAAAAAAAAAGAGGATGCCATGGTACTATAGGTGGCCTTAGCGTTGCTGGTGCACGAGGCAAGGAATAATA
TGTATGCGCTGTGCACAATCGAGTTGGCTTTCTGTTGATTAATAACCGGTCATGTTAATTGGTGGTGACA----CATAAG
TTGCATTGTGATCGCGAGGAAGCGTGGAGTTGCAACAATAG--GCAAACGATGCAGATTTAGAGGAATGTTTATTGATTA
T---AAGCTTTTCACTACATAATTTAGAGAGGAGAGATTCATATGCATTATGGGGACAATTTTGAGTCACTGGGAAAGAA
TATCAGTGACGAACACAGAA------TGC------TGGTTCAGTACTATATCTTTGTTATCTTGTGGATCGATCAAACTA
ATGGACCCATGTTTTTCTCGCAGTGTGCAGTTGGCTGAAATAGAAGTTAGTATTCTAGCAACAGAGAACTAAAATGATTT
GTTTCTATTTCATTGTTGACTTGCTGCCGTATACAACTATACATAATTACATACTGTCACCAACTACAGACTTGGGATTT
ATTACAATTTATGAAGTCCTGATAAACCTGTTTTATAATCATCATCAGTAACAAAACTAAATACAGTCTGCAGCTCTGCT
CACAAGTAATATTTTCTTCTTGAATGTTGACATGAAAAGCAAATTTGTAGGTAGAAAACTTTCATTCATTTAGCTGTTAT
AGCTTGTGTCGATTTGTATTTAGCTGTTTCCACAGTTCTTCTTCTTGCAACTCTCAGTTGTTATTGCCATTGATAAGAAT
GCCCAGAGTCATATGCTCCATCCTTTGTGTTTATCTGAGGACCTTATCAGCAAAGTGTATGTGTATCTCTGCAGAGTATG
CTCCTGTCTTCCGAAGATACCGTGAGCGGGATCCCTACAAGCTTCTTGGTGTTGACCGTGATGCATCTGAAGAAGAGATC
AGAAGTGCAAAAGACTTCCTAGTTCAACAGTATGCTGGTCACGAAGCAAGTGAAGAAGCTATTGAAGGTGCTTATGAAAA
GATAATAATGAAGAGCTACCAGCATAGGAAGAAAACGAAAATTAATCTGAAAACCAAGCTTTTAAAGCGAGTCGAGGAAT
CCCCGTCATGGGTAAAGGCATTTCTTGGATACTTTGAGGTGCCATCAATGGATATTATTTCCAAAAGATTATTCTTTTTT
GCTTTCATCGCTGGATGGAGCATAGCAACTTCTGCTGAGAATGGACCTGCATTCCAGGTATATGCTTTGATTATCCTGAC
CTTTGAAAGGTCTCTCTTTTCTTGTTTGATGACATGTTTCAGTCCTGTGGTTGCTTGTGG----TAACCTAAAAAACATG
ACACGTAACTTGTTGATT-CACAAAGGACCAAATTGAGTGCCATTAAGTTCTAACCAATCACCAGCTATAAACTCACAAT
CCACAATGCTTGCCCTGTGCATCTGTCTACTCTTATTTCTG--TGACAGCTGAGAATTCAATAACAATGGCAATGCAAGA
CCTGATAAGTCCTAGATTTGGATATTTACTTATTAG--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------AAGTTAGAAGAGCTTCCAGCTTAGG
GATCAGTGGATCACTGTATTGACAT-TAGTTTACCT--TCTGCAGCTCGCAATATCACTCTTCTCGTGCATATACTTCCT
TAATGACAAGATGAAGAACCTTCTGAGAGCATCGACTACTGGGTTAGCGAAATTTCTTCAGCCAATGCCTTGACTTTTTA
TCCATAGTATGTTTGCTCACGCAATGTGTCCTTCCAGGTTTGGAGTACTTGTTGGTGGCTGGATTGTTGGTTCTATGTTG
GTCCCTCTTATCCCAACATTTATCATCCCACCTACATGGTCGCTTGAGCTTCTTACCTCCTTGGTTGCATATGTTTTCTT
GTTTCTGGGGAGCACTTACCTCAAATGAAGCAACATCAATCTTGTAACCGTAAATTGTAGTATTGTTTGGAAAATTTTGG
CAGTTACTGAAATGTCTACAATTGCATGTACCGGCAATGTTGTTGAATCCTTCGTCCTTCGT-TCAGCTCAGGGTAGAGA
CAACCGGGGAAGCCAGGTGCTTTGTTTACACCAGTTGTCCACTCATTTGTTTAATTAATTGTCCATATAGGGGGCTGTTC
TTCGCCTCGCTGGTCCAAGTGAATCGCTGTATGGATCACCTGCTGAAGCTTAGGCACAGGATCAATTCAGATTGTTAACT
CATACGGAATGTACTATTTACATATTGATATTGATGTGGAAATGATGTAGCGAATTTTTTGCATCTTACGTAATGCTGTT
GCAACTTGCAAGAAGCATCAAACAGTCACAAATGTTATGGCAAGAGTATCCCCAAAATGTTCTGGGGATAAAGCCCACTG
ATGTTAGATTTCCTCCAGCATGGTTTCAAAACTGTCGGGTACACTGTTTGGAATTTTGAAAAAATTATTTTGATAATGTC
GCTACATA-ACTCTTGACCTATTGATGAGTAAGTTAAGTAT---------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------
>chr5B_776
--------------------------------------------------------------------------------
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----------------------------------AATCCAAATCAACTG-AAAATGGAACAGGAAGTGAACAAAGCCCGG
CCCAGTAAAATCCGTAGGTACCAAAACCAGCCCTACAGGCCCATCACCTGCCTGCCTACCCCCTCCCCTTCTCCGTCTCG
TCTTTCTATCCAATCCCATCTCCTTCCCTCCCAGGGCGGTCTGCCTCGCCCGCGACCACCTCGCCGCCGCATCCCTCTCA
ACCGCCGCCGGCGTCGGAGATGCAGGCGACGGCCGCATCCTTCCTCGCCCGCCCCCTCCCGTGGCCCCGTCGGTGAGCAC
AGCCTTAAACCCCCTGACTCCTTGATCCAGGTCTCTTTCTTTTCTGGCGTTCTGACTAGGCCCCGTGCCTGTGATTCTGT
TGGGTGCAGCATTGGCAGGAGCACGTATGGGGCGGTGGCGGTGCACGGAGGCGTCTCGCCGCTGCCACCGCGGCTGCGGG
GGGTACGGTGCTCCATGAGCCTCTCTATCGGCGCCGGTTCGAGCGACATCGGAGACAACGGATTCAGCTACCGTAAGAGA
GCTATTCAAACCCTAGCTCCCATGTGAATGTATTCGCTGATTTATTTTCGTAGGATAGGATTGGA-----TACTGTAGGT
ATCTGCACAGAAAAAAAAAGAGGATGCCATGGTACTGTAGGTGGCCTTTGCGTCGCTGGTGCACGAGGCAAGGAATAATA
TGTGTGTGCTGTGCACAATCGAGTTGGCTTTCTGTTGATTAATAACCGGCAATGTTAATTGGTGGTAACCTTAGCATAAG
TTGCATTGTGATCGCGAGGAAGTGTGGAGTTGCAACAATAG--GCAAACGATGCAGATTTAGAGGAATGTTTATTGATTA
---GAAGCTTTTTACTACATAATTTAGAGAGGAGAGATTCATATGCATTATGGGGACAATTTAGAGTCACTGGGAAAGAA
TATCAGTGACGAACACAGAA------TGCAGTTGCTGGTTCAGTACTATATCTTTGTTATCTTGTGGATCGATCAAACTA
ATGGACCCATGTTTTTCTCGCAGTGTGCAGTTGGCTGAAATAGAAGTTAGTATTCTAGTAACAGAGAACTAAA-TGATTT
GTTTCTATTTCATTGTTGACTTGCTGCCGTATACAACTATACATAATTGCATACTGTCACCAACCGCGGACTTGGGATTT
ATTACAATTTATGAAGTCCCGATAAACCTGTTTTATAATCATCATCAATAACAAAACTAAATACAGTCTGCAGCTCTGCT
CGCAAGTAATATTTTCTTCTTGAATGTTGACATGAAAAGCAAATTTGTAGGTAGAAAACTTTCATCCGTTTAGCTGTTAT
AGCTTGTGTCGATTTGTATTTAGCTGTTTCCACAGTTCTTCT---TGCAACTCTCAGTTGTTATTGTCATTGATAAGAAT
GCCCAGAGTCATATGCTCCATCCTTTGTGTTTATCTGAGGACCTTATGAGCAAAGTGTATGTGTATCTCTGCAGAGTATG
CTCCGGTCTTCCGAAGATACCGTGAGCGGGATCCCTACAAGCTTCTTGGTGTTGACCGTGATGCATCTGAAGAAGAGATC
AGAAGTGCAAAAGACTTCCTAGTTCAACAGTATGCTGGTCACGAAGCAAGTGAAGAAGCTATTGAAGGTGCTTATGAAAA
GATAATAATGAAGAGCTACCAGCATAGGAAGAAAACGAAAATTAATCTGAAAACCAAGCTTTTAAAGCGAGTCGAGGAAT
CCCCGTCATGGGTAAAGGCATTTCTTGGATACTTTGAGGTGCCATCAATGGATATTATTTCCAAAAGATTGTTCTTTTTT
GCTTTCATCGCTGGATGGAGCATAGCAACTTCTGCTGAGAATGGACCTGCATTCCAGGTATATGCTTTGATTATCCTGAC
CTTTGAAAGGTCTGTCTTTTCTTGTTTGATGACATGTTTCAGTCCTGTAGTTGCCTGTGGAGATTAACCT-AAAAAAATG
ACACGTAACTTGTTGATTTCACAAAGGACCAAGTTGAGTGCCATTAAGTTCTAACCAATGACCAGCTATAAACTCACAAT
CCACAATGCTTGCCCTGTGCATCTGTCTACCCTTATTTCTGTATGACAGCTGAGAATTCAATAACAATGGGAATGCAAGG
CCTGATAAGTCCTAGTCTTGGATATTTACTTATTAG--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------AAGTTAGAAGAGCTTCCCAGCTTAG
-------GGATCACTGTATTGACATGTAGTTTACCT--TCTGCAGCTCGCAATATCACTCTTCTCGTGCATATACTTCCT
TAATGACAAGATGAAGAACCTTCTGAGAGCATCAACTACTGGGTTAGCAAAATTTCTTCAGCCAATGCCTTGACTTTTTA
TCCATAGCATGTTTGCTCATGCAC-GTGTTCTTCCAGGTTTGGAGTACTTGTTGGTGGCTGGATTGTTGGTTCTATGTTG
GTCCCTCTTATCCCAACATTTATCATCCCACCTACATGGTCGCTTGAGCTTCTTACCTCCTTGGTTGCATATGTTTTCTT
GTTTCTGGGGAGCACTTACCTCAAATGAAGGAACATCAATCTTGTAACCGTAAATTGTAGTATTGTTTGGAAAATTTTGG
CAGTTACTGAAATCTCTACAATTGCATGTACCGGCAATGTTGTTGAATCCTTCGTCCTTCGT-TCAGCTCAGGGTAGAGA
CAACCGGCGAAGCCAGGTGCTTTGTTTACACCAGTTGTCCACTCATTTGTTTAATTAATTGTCCATATAGGGGGCTGTTC
TTTGCCTCGCTGGTCCAAGTGAATCGCTGTATGGATCACCTGCTGAAGCTTAGGCACAGTACCAATTCAGATTGTTAACT
CATACGGAATGTACTATTTACATATTGATATTGATGTGGAAATGATGTAGCGAAATCTTTGCATCTTACGTAATGCTGTT
GCAACTTGCAAGAAGCATCAAACAATCACAAATGTTATGGCAAGTTGGGTACACCGTTTGGAATTT------------TG
ATGTTAGATTTCCTCCAGCATGGTTTCAAAACTGTTGGGTACACTGTTTGGAATTTTGAAAACATTATTTTGATAATATT
GCGACATA-ACTCTTGACCTATTGATGAGTAAGCTAAGTATTTGTATACCCGCTAAGATGAAAAATAAGATGGGCATCAT
ATGTTATAATTCTAGATAGGTACATCCCAAATTACTGCCTAAAGTTGATCTGGACTTGCTGCGGTTGC------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------S--------
-----S----SSSSS-------------S----S---S-----S------SSSSS--------SSS--S----S------
-S--------------SSS-----------------------SSSSSSSSSS-----S------------SS-----S-S
S-S-S--------------------------------------------------------S--S--------S-SSSSS
SSSSSSSSS------S--S--------------SS-S-S--------S------------------------------S-
-------------------------------------------------S------------------------------
------------------S-----------------------------------------------------S-------
-------------------------------S------------S-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------S-----S---------------------S-------------
S------------S------------------------------------------------------------------
-------S---------------S--------------------------------------------------------
-----------------S--------------------------------------------------------------
------S------------S------S----------S---S--S-S-S------------------S---SS-------
--------------S--------S---------------SSSS-------------------------------------
-SS------------------------------------------------------------------SSS-------S
S-------------------SSSSSS-----------------------------------S------------------
-------------------------------------------S---------------S--------------------
-----------------------------------------------------------S------S-------------
----------------S----------------------S----------------------------------------
----------------------------------------------------------S---------------------
----------------------S------------------------------------------S--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------S-----------------------------------------------------------------
----------------------------S---------------------------------------------------
----S---------------------------------------------------------------------------
--------------------S------------------------------------------S----------------
-----------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------
------------------------------------SS---------S--------------------------------
--------------------------------------------------------------S-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------S---------------------------------------------
--------------------------------------------------------------S----------S------
--------------------------------------------------------------------------------
-----S------------------------------------------------------S---SS--------------
--------------------------------------------------------------S-----------------
----------------------S----S-----------------S-------------------------SS-SSS---
----------------------------------------S----S----------SS----------------------
S-------S-----SS------------S---------------------S---------------------S-------
-------------------S-----S------S----SSS---SSS------------S--S--S---SSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_336
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------GCAC
TTAGCTCATTGGGGGT----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------
>reverse_1615
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------TGAGGAAGCTTGGAGTTGCA----------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------
>forward_446
--------------------------------------------------------------------------------
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--------------------------GTACACTCTTCACCGGACGG----------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------
>reverse_1781
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------TGCAGTTGCTGGTTCAGTACT---------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------
>forward_727
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------TTCACGCCTTCAC
CAATGGA-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------
>reverse_1782
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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---------------------GCAGTTGCTGGTTCAGTACT---------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------
>forward_728
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------TCACGCCTTCAC
CAATGGAT------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------
>reverse_2749
--------------------------------------------------------------------------------
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----------------------------GTGACATGTTTCAGTCCTGTGG------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------------------------------------------------------------------------
>forward_729
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------CACGCCTTCAC
CAATGGATG-----------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_2805
--------------------------------------------------------------------------------
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----ATAACTTGTTGATTTCACAAGGACCA--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------
>forward_992
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------ATCCCATCTCCTTCCCTCCT------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------
>reverse_2944
--------------------------------------------------------------------------------
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---------------------------------------------------------------GCAATGGGAATGCAAGG
CC------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------------------------------------------------------------------------
>forward_1540
--------------------------------------------------------------------------------
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TGTGTGGGCTGTGCACAATT------------------------------------------------------------
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------------------------------------------------------------------------
>reverse_3227
--------------------------------------------------------------------------------
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--------------------------TGCGCTACATTGTGGAACAG----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>forward_1641
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------AGCTTGGAGTTGCAACAATGT---------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------
>reverse_3228
--------------------------------------------------------------------------------
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---------------------------GCGCTACATTGTGGAACAGAG--------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------------------------------------
>forward_2901
--------------------------------------------------------------------------------
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---CAATGCTTGCCCTGTGCG-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------------------------------------------------------------------------
>reverse_3754
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------ATAGAGA
CAACCGGCGAAGC-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
