>input_sequence_31062
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----------------------------------------ATGTCGTCGTCGTC------CCCGCGGCCGGCGACGCAGC
GCCGGCGCCTCCACCCGGCCGCCTACCTCTCCGCGGCGGCCACCCTCCTGGCGCTCGTCGCCGCGGCCTTCTCCCGCGCC
CTCGGCCCCCGCTTCCCCAACCCGCCCGACGCCCGCCGCTGCCGCCCCGACCCCGAGGGCTCCTGGTCCGCCGGCGTCTT
CCTCGGCGACTCCCCGTTCGCCCTCAAGCCCATCGAACACGTACCTCAACGGCCTCAATTCCACCCCTAGGCGCGTCGTC
GTCGTCGCTCGTGGCGTTAATTCTGGCTTTCCGTGTGGTTCGCGTGCGTGCAGTGGGGAATCTCGGCGGACGCGG-----
-GCGCGGCGTGGTCGGTCGCGAACCCGGCGGTGACGTGCGCGGACGTGGCGCAGTCTGGATCCCCCAGCAGCTTCGTCGC
CAGCCCCTTCCTCTTCCTCCAGGTTCGAACTACCAAACATTTGGACACCGAGAGGTGAAAGCAGCAGCAGTTGTTGTGAA
TTGTGATTCGTACCCTGCCGG-CATCTCTCATGTGAATTTTGATAATTGCCATGATCGATTCTTGTTCCTGTCCTGATGG
ATGTGAAGCTACATTCTCCTCAGGGCGATGGCATCTACATGTTCTTCGAGACGAAGAACCCCGCTACATCGCAGGGCGAC
ATTGCCGCTGCCGTGAGCAAGGACGCCGGCGCGACATGGCAGCAGCTGGGCGTGGTGCTAGATGAGGAGTGGCATCTCTC
GTACCCATACGTGTTCAGCTACAATAGCAAGGCAAATATCCCACTCACAGCTGC-----TTATTTGTAACCAACAAGTTC
GTGTTCCAATCATTCTCACACGCACTTCTTTGCTTGCCCCCA--CTCCACAGGTCTACATGATGCCTGAAAGTAGTAAGA
ATGGAGATCTCCGGTTGTATCGTGCATTGGATTTCCCCCTTAAGTGGACACTGGAGAAGGTCCTTCTGGAGAAGCCACTT
GTGGATTCAGTCATCATAAATTTCAGGGGTTCCTATTGGCTCATTGGGTCAGATTTAAGTTCTTATGGTGCGAAACAGAA
TGGAGAGCTCAGTATCTGGTATAGCAGCTCTCCTCTTGCCCCTTGGAATCCACACAGGCATAATACAATCGGTAGCATGG
ATAACGGGTCGAGTTTTAGAAATGGAGGCAGGCCCTTCGTTTATGACGGCGATCTCTATCGTATAGGCAAACAGAGTGGT
GGTGTGTCTGGCCATAGTATTAAAGTGTTCAGAGTAGAAATCCTAACAGCAAATGAATACAAGGAAATTGAGGTCCCATT
TGTCTTTGACAAGCCCCGCAAGGGTCGAAATGCATGGAACGGTGCACGATCCCATCACCTTGATGTTCAATGGCTTCCAT
CAAGTCAACTCTGGATTGGTGTAATGGATGGTGATAGAGTGTCTTCAAATGATTCAGTTCACCGCCTGACCATAGGGTAC
ATGTTTTATGGAGTCACTCTGTTACTAGTTCTTCTGCTTGGTGGGCTTATTGGTGCAATTAGATGCACAATACCACTCAG
ATGGTGTGTTCCACATACTGAGAAACGGGATGACTTCTTCCATTCAAAGCAGCAGTTCTTTCTGAAGTATAAGCTAAGTT
CGCTGTTTTCCAGTTTGAACAAGTTGGGTTCTCTTCTTGGTGGGAGAATCAACTACAGAACTTGGAAGGGACGAGTTTAT
GTTGTGCTAGTAATACTAGTCTTAATTTTTCTAACTTGTCTTGGAACTCACTGCATATATGGTGGCAATGGTGCTGAAGA
GCCATATCCAATCAAGGGTAGGTACTCGCAGTTCACGCTGTTAACTATGACATACGATGCCCGGCTTTGGAATCTGAAGA
TGTTTGTGGAGCATTACTCCAAATGTGCATCAGTGAGGGAGATTGTGGTTATCTGGAATAAAGGCCGCCCCCCAGTGCAA
AATGAATTGAAGTCAGCTGTTCCTGTCAGGGTCAGAGTTGAAGATAAGAACACTCTGAACAATAGATTCAACATGGATGA
AAAAATTAAGACAAGAGCTGTTATGGAGCTCGATGATGATATCATGATGGCATGTGACGACTTAGAGCGTGGGTTCAAGG
TATGGAGGGAGCACCCTGATAGGATTGTTGGGTACTACCCACGCCTTGCTGAAGGTACTCCACTGGAATACCGCAATGAG
AGGTATGCTCGGCAACAAGGAGGTTATAACATGGTACTGACTGGAGCAGCATTCATGGATCATGGCTTGGCCTTTGAGAG
GTATTGGAGCAAGAAGGCTGAGGTAGGAAGGAAGATGGTAGACAGTTTCTTCAATTGTGAGGATGTGCTTCTAAATTTCC
TGTTTGCAAATGCAAGCTCAATGAGCACGGTGGAGTATGTAAAGCCAGCTTGGGCAATTGATATGTCTAAGTTTTCAGGA
GTAGCCATTAGTCGAAACACACAAGCACATTATCATGTTAGGAGCAAATGCCTTGCTAAATTTTCAGAAGTCTATGGGAA
CTTAACTGCTAAAAGGTTCTTTAGCAGTCGAGGTGATGGCTGGGATGTATAG----------------------------
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>chr4D_1_TraesCS4D01G025400
CGGAATAGCAGTCGGAGCAGTAGCCGGGTTTTTCATCATGTACAAGTACCTAAAGGATAGGAAGATATTGTAAAAGACCA
CGCACCATA-TGTGGAATCGCCTAGAAATCTAGAACTGTAAATAAAGCGGTTTTGATCTCTTCTGGAGGCACTTATGGAT
TCATGGCATGACATTGTTTTGGTGTGCTGGTGGATGCTTAC--ATACCAACTTGGGAGAAAGTGTTTTCCTGATACTCAT
AT-ACACGCCATACC----GAGGAGCAAGTATTTTTCTGCCACTTTGCTGGGAATGTTACCCCCTTATTGAGCTGAGAAG
TGAAAATCTGAAACTTTTATTGCGAAACGACTCCTTTTATTGATGTTACTGATGATATTGGAAATTCATGTAACAATGTC
CAGAAT-CCATTTTTGCTCCGCCTTGACGATATTTTTCTTGTTCCTCTTACTGTGCTCGTGGCTGCTGTTTTCGCTGTTT
GTG-TTTTCGGTATCTATTTTCCGTATCATCCACAATCCGCGAGAACGGATTATTAATGCAAAGTACTTCTGTTGTATT-
--------------------------GGCTGCTGAGACAAGTCTTTAAACCGATAGTTAATTATGTTGATGCATAGTGGT
TTGTATGGCATAAAATCACAACATAAGTAGATATCTTTTGAAAGAGTTCCTGC---------------------------
--------------------------------------------------------------------------------
-------------------AAAAAGAAAAATTCTTAGAAAGCGAGTTTATTCAAGGCAAAAACCGGAGTCGAACGGTTAA
ATAAACCGGTCATATGAATGATGTAAAATTGAGTAAACAAAGTTATCAATTTTTTTTTAGAGATGTAACGTGAACTCTGG
GCAAGTAGGGGGTAAAATGCAACTTTCCCTCTGA-----------ATGACGTATTCTCTCGCTGCTGCACGGTCGCCATG
-----------------------------------------------GGCAGCCGTCGGATCGAGCATCGACGTCCCAGG
ATTTTT--CCCGCAACCGTCACGAACGGGGGCCCTT-----------GAAGCGCGCAGCTGCACTGCTTCTCCGCGCGAC
ACGTATCCACCCACC------TCCCCATCTCCAACCGCCGATGTCGTCGTCGTC------CCCGCGGCCGGCGACGCAGC
GCCGGCGCCTCCACCCGGCCGCCTACCTCTCCGCGGCGGCCACCCTCCTGGCGCTCGTCGCCGCGGCCTTCTCCCGCGCC
CTCGGCCCCCGCTTCCCCAACCCGCCCGACGCCCGCCGCTGCCGCCCCGACCCCGAGGGCTCCTGGTCCGCCGGCGTCTT
CCTCGGCGACTCCCCGTTCGCCCTCAAGCCCATCGAACACGTACCTCAACGGCCTCAATTCCACCCCTAGGCGCGTCGTC
GTCGTCGCTCGTGGCGTTAATTCTGGCTTTCCGTGTGGTTCGCGTGCGTGCAGTGGGGAATCTCGGCGGACGCGG-----
-GCGCGGCGTGGTCGGTCGCGAACCCGGCGGTGACGTGCGCGGACGTGGCGCAGTCTGGATCCCCCAGCAGCTTCGTCGC
CAGCCCCTTCCTCTTCCTCCAGGTTCGAACTACCAAACATTTGGACACCGAGAGGTGAAAGCAGCAGCAGTTGTTGTGAA
TTGTGATTCGTACCCTGCCGG-CATCTCTCATGTGAATTTTGATAATTGCCATGATCGATTCTTGTTCCTGTCCTGATGG
ATGTGAAGCTACATTCTCCTCAGGGCGATGGCATCTACATGTTCTTCGAGACGAAGAACCCCGCTACATCGCAGGGCGAC
ATTGCCGCTGCCGTGAGCAAGGACGCCGGCGCGACATGGCAGCAGCTGGGCGTGGTGCTAGATGAGGAGTGGCATCTCTC
GTACCCATACGTGTTCAGCTACAATAGCAAGGCAAATATCCCACTCACAGCTGC-----TTATTTGTAACCAACAAGTTC
GTGTTCCAATCATTCTCACACGCACTTCTTTGCTTGCCCCCA--CTCCACAGGTCTACATGATGCCTGAAAGTAGTAAGA
ATGGAGATCTCCGGTTGTATCGTGCATTGGATTTCCCCCTTAAGTGGACACTGGAGAAGGTCCTTCTGGAGAAGCCACTT
GTGGATTCAGTCATCATAAATTTCAGGGGTTCCTATTGGCTCATTGGGTCAGATTTAAGTTCTTATGGTGCGAAACAGAA
TGGAGAGCTCAGTATCTGGTATAGCAGCTCTCCTCTTGCCCCTTGGAATCCACACAGGCATAATACAATCGGTAGCATGG
ATAACGGGTCGAGTTTTAGAAATGGAGGCAGGCCCTTCGTTTATGACGGCGATCTCTATCGTATAGGCAAACAGAGTGGT
GGTGTGTCTGGCCATAGTATTAAAGTGTTCAGAGTAGAAATCCTAACAGCAAATGAATACAAGGAAATTGAGGTCCCATT
TGTCTTTGACAAGCCCCGCAAGGGTCGAAATGCATGGAACGGTGCACGATCCCATCACCTTGATGTTCAATGGCTTCCAT
CAAGTCAACTCTGGATTGGTGTAATGGATGGTGATAGAGTGTCTTCAAATGATTCAGTTCACCGCCTGACCATAGGGTAC
ATGTTTTATGGAGTCACTCTGTTACTAGTTCTTCTGCTTGGTGGGCTTATTGGTGCAATTAGATGCACAATACCACTCAG
ATGGTGTGTTCCACATACTGAGAAACGGGATGACTTCTTCCATTCAAAGCAGCAGTTCTTTCTGAAGTATAAGCTAAGTT
CGCTGTTTTCCAGTTTGAACAAGTTGGGTTCTCTTCTTGGTGGGAGAATCAACTACAGAACTTGGAAGGGACGAGTTTAT
GTTGTGCTAGTAATACTAGTCTTAATTTTTCTAACTTGTCTTGGAACTCACTGCATATATGGTGGCAATGGTGCTGAAGA
GCCATATCCAATCAAGGGTAGGTACTCGCAGTTCACGCTGTTAACTATGACATACGATGCCCGGCTTTGGAATCTGAAGA
TGTTTGTGGAGCATTACTCCAAATGTGCATCAGTGAGGGAGATTGTGGTTATCTGGAATAAAGGCCGCCCCCCAGTGCAA
AATGAATTGAAGTCAGCTGTTCCTGTCAGGGTCAGAGTTGAAGATAAGAACACTCTGAACAATAGATTCAACATGGATGA
AAAAATTAAGACAAGAGCTGTTATGGAGCTCGATGATGATATCATGATGGCATGTGACGACTTAGAGCGTGGGTTCAAGG
TATGGAGGGAGCACCCTGATAGGATTGTTGGGTACTACCCACGCCTTGCTGAAGGTACTCCACTGGAATACCGCAATGAG
AGGTATGCTCGGCAACAAGGAGGTTATAACATGGTACTGACTGGAGCAGCATTCATGGATCATGGCTTGGCCTTTGAGAG
GTATTGGAGCAAGAAGGCTGAGGTAGGAAGGAAGATGGTAGACAGTTTCTTCAATTGTGAGGATGTGCTTCTAAATTTCC
TGTTTGCAAATGCAAGCTCAATGAGCACGGTGGAGTATGTAAAGCCAGCTTGGGCAATTGATATGTCTAAGTTTTCAGGA
GTAGCCATTAGTCGAAACACACAAGCACATTATCATGTTAGGAGCAAATGCCTTGCTAAATTTTCAGAAGTCTATGGGAA
CTTAACTGCTAAAAGGTTCTTTAGCAGTCGAGGTGATGGCTGGGATGTATAGTA---ACACAGATAACTGGATA-TTTTG
TCTTGAGACTAGCATTGTCTGATTAGCTAAATTTTCAAGTTGGTAAAGCAGAGAGCTTAGTA-----------------G
TTCAGGATGATTAGTGCAACACTGAAGTGACCGTTTGTGTAC------------AGTTAAGTATATTATCCCCTTTCTAT
ACGTCTCCATAGATAACATTTTTTATTGCATCTATGGTGGCATCTGTATAGATAACTCGATACACTTTTTACCTTTTCAA
TTGTTAATCAGAACTGCATCGGGTTTGCAAACTGTAATTTGTCCCTGTCAGTGTGCATGCAACTGCTACCATGGTCCAGA
ACGAATGGTTTGTTTTTTCATTTCAGATTAACAGAGGTTATTTGAAATGTTTTATTTGT--CATTTGCAGTCGCAAGTTG
TATTGCATGAAGAATACTATTGAGAAAAAAAGGGTATTTCTGTGTCGAAATATCACACTCCATTCAGATTGGTATATATG
TACTTCACATTTTCATGGCGTGAACC-ATGATCAATAACAATTGTGAAGCAGAATCAGCTTCTTTTCCTACTACTTTTCC
TTGGTAAATGAACCAAGAAGACTAAATCTACATTTATCAACTTCATCCAGAGGCCTCTTCGTCAAATTATGTATGCCACA
GGTTTGATAATAATCAAAC---CATCAAGAATCAGGAAATGCCAACGCTTGAATCAAAACTTGCAGTTCTTCTTCAGGTA
AACCACCACTTCTTGCTGCAACAAGTGCAGTAAAAGGGTCAATGTTT-GATTCTCAATCTAAGAATTCTGCTGTAGTTTC
AGGACAGATGAGATGTACAGTTATTAACTTACAATCAAGCAAAGGATGGCGCAGCCGGCAGCCCCAGGGAAGAGCGCGTA
CCAAAGTTGTAAATGGTGAAACTTCGGACCATCAATAAACAGGAGAGGCAAGCTCGCAGCTGCGGTTATCATAAAAAGAG
GTGAGCTTAAAACATTTCTTTGCTGCATTTCGTAGCTGAAAAAATGAAGCCA
>chr4B_1
CGGAATAGCAGTCGGAGCAGTAGCCGGGTTTTTCATCATGTACAAGTACCTAAAGGATAGGAAGATATTGTAAAAGACCA
CAGCACCGTTTGTGGGATCGCCTAGAAATCTAGAACTGTAAATAAAGCGGTTTTGATCTTGTCTGGAGGCACGTATGGAT
TCATGACATTGTTGCATAGTGGCATGGGTTGCTGATATTGG---TACCAACTTGGGAGCTGCAACT--------------
--CACACGCCATATATGCGAAGGAGCAAGTATTTTG-TGCTACTTTGCTGGGAATGTTACCCCCTTATTGAGCTGAGAAG
GGAAAATCTGGAACT-------------------TTTTATTGATGTTACTGATGATATTGGAAATTCATGTGAC-ATGTC
CAGAATCCCATTTTTGCTCTGCCTTGACAGTGTTTTTCCTTTTCCTCGTACTGTGCTCATGGTTGCCGTTTTCGCTGCTC
ATGTTTTTCGGTATCTAT-TTTCCTATCATCCAAAACCTGCGACTG-GGTGA--TAATGACAAGCACTTCTGTTGTACT-
---CTCTTCGCCGCAAAATATATGGCGGCTGCTGAGACAAGTCTTTAACTGATATAATCATTATGTTAAATACATACTAG
TGAATGT-----AAATCACAACATAAGTGAATATCTTTGAAAGTGAATCTAGCGACAATTGTGAAGACCAATGATGTTGT
GAAATGTGAATAGTGTGAGCTCTCTGACTT--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------GACGAGACTGCGTGTTCCTGCGGGCTCACGGCAGCCGTCGGATCGGCCATCGACGTCCCAGG
ATTTTTTTCCCGTAACCGTCACGTCCCGCTCCGCGCAAAGAGCCCCCGACGCGCGCGGCTGCACGGCTTCTCCGCGCGAC
ACGTGCACACCCACC------TC-CCATCTCCAACCGCCGATGTCGTCGTCGTC------CCCGCGGCCGGCGACGCCGC
GCCGGCGCCTCCACCCGGCCGCCTACCTCTCCGCGGCGGCCTCCCTCCTGGCCCTCGTCGCCGCGGCCTTCTCCCGCGCC
CTCGCCCCCCGCTTCCCCAGCCCGCCCGACGCCCGCCGCTGCCGCCCCGACCCCGAGGGCTCCTGGTCCGCCGGCGTCTT
CCTCGGCGACTCCCCGTTCGCCCTCAAGCCCATCGAACACGTACCTCAACGGCCCCAATTCCCCCCCTAGGCGCGTCGTC
GTCGTCGCTCGTGGCGTTAATTTTGGCTTTCCGTGTGGTTCGCGTGCGTGCAGTGGGGAATCTCGGCGGACGCGG-----
-GCGCGGCGTGGCCCGTCGCGAACCCGGCGGTGACGTGCGCGGACGTGGCGGAGGCCGGGTCCCCCAGCAGCTTCGTCGC
CAGCCCCTTCCTCTTCCTCCAGGTTCGAACTACCAAACATCTGGACACCGAGAGGTGAAATCAGCAGTGGTACTTGTGAA
TTGTGATTCGTACCCTGCCGGCCATCTTTCCTGTGAATTTTGACAACGACCATGATCGATTCCTGTTCTTGCCCTGATGG
ACGTGAAGCTAAATTCTCCTCAGGGTGATGCCATCTACATGTTTTTCGAGACGAAGAACCCCGTTACATTGCAAGGCGAC
ATTGCCGCTGCCGTGAGCAAGGACGCCGGCGCGACATGGCAGCAGCTGGGCGTGGTGCTAGATGAGGAGTGGCATCTCTC
GTACCCATACGTGTTCAGCTACAATAGCAAGGCAAATATCCCACTCGCAGCTGCTTATTTTATTTGTAACCAACAAGTTC
ATGTTGTAATCATTCTCACATGCGCTTCTTTGCTTGCCTATTGGCTCCACAGGTCTATATGATGCCTGAAAGTAGCAAGA
ATGGAGATCTCCGGTTATATCGTGCATTGGATTTCCCCCTTAAGTGGACACTGGAGAAGGTCCTTCTGGAGAAGCCACTT
GTGGATTCAGTCATCATAAATTTCAGGGGTTCCTATTGGCTGCTTGGGTCAGATTTAAGTTCTTATGGTGCGAAGCAGAA
TGGAGAGCTCAGTATCTGGTATAGCAGCTCTCCTCTTGCTCCTTGGAATCCACACAGGCATAATACAATCGGTAGCATGG
ATAACGGGTCGAGTTTTAGAAATGGAGGCAGGCCATTCGTTTATGACGGCGATCTCTATCGTATAGGCAAACAGAGTGGT
GGTGTGTCTGGCCATAGTATTAAAGTGTTCAAAGTTGAAATCCTGACAGCAAATGAATACAAGGAAATTGAGGTCCCATT
TGTCTTTGACAAGCCCCGCAAGGGTCGAAATGCATGGAACGGCGCACGATCCCATCACCTTGATGTTCAATGGCTTCCAT
CAAGTCAACTCTGGATTGGGGTAATGGATGGTGATAGAGTGCCTTCAAACGATTCAGTTCACCGCCTGACCATAGGGTAC
ATGTTTTATGGAGTCACTCTGTTGCTAGTTCTTCTGCTCGGTGGGCTTATTGGTGCAATTAGATGCACAATACCACTCAG
ATGGTGTGCTCCGCATATTGAGAAACGGGGTGACTTCGTCCATTCAAAGCAGCAGTTCTTTCTGAAGTATAAGCTAAGCT
CGCTGTTTTCCAGTTTGAACAAGTTGGGTTCTCTTCTTGGTGGGAGAATCAACTACAGAACTTGGAAGGGACGAGTTTAT
GTTGTGCTAGTAATACTAGTCTTAATTTTTCTGACTTGTCTTGGAACTCACTGCATATATGGTGGCAATGGTGCTGAAGA
GCCATATCCAATCAAGGGTAGGTACTCACAGTTCACGCTGTTAACTATGACATATGATGCCCGTCTTTGGAATCTGAAGA
TGTTTGTGGAGCATTACTCCAAATGTGCATCAGTGAGGGAGATTGTGGTTATCTGGAATAAAGGCCGCCCCCCAGTGCTA
AATGAATTGAAGTCAGCTGTTCCTGTCAGGGTCAGAGTTGAAGATAAGAACACTCTGAACAATAGATTCAACATAGATGA
AAAAATTAAGACAAGAGCTGTTATGGAGCTCGATGATGATATCATGATGCCATGTGACGACTTAGAGCGTGGGTTCAAGG
TATGGAGGGAGCACCCTGATAGGATTGTTGGGTACTACCCACGCCTTGCTGCAGGTACCCCACTGGAATACCGCAATGAG
AGGTATGCTCGGCAACAAGGAGGTTATAACATGATACTGACTGGAGCAGCATTCATGGATCATGGCTTGGCCTTTGAGAG
GTATTGGAGCAAGAAGGCTGAGGTAGGAAGGAAGATGGTAGACAGTTTCTTCAATTGTGAGGATGTGCTCCTGAATTTCC
TGTTTGCAAATGCAAGCTCAATGAGCATGGTGGAGTATGTAAAGCCAGCTTGGGCAATCGATATGTCTAAGTTTTCAGGA
GTAGCCATTAGTCGAAACACACAAGCACATTATCATGTTAGGAGCAAATGCCTTGCTAAATTTTCAGAAGTCTATGGGAA
CTTATCTGCTAAAAGGTTGTTTAGCAGCCGAGGTGATGACTGGGATGTATAGTAGTAACAGGGATAACTGGATACTTTTT
TCTTGAGACTTGCATAGTCTGATTAGCTAAGTTTCCAAGTTG-----------------GTAAAGCAGAGGGCTTAGTAG
TCCAGGGTGATTAGTGCAACACTGAAGTGCTTTATCCTGCTGCCCGTTTGTATAAGTTAAAAATATTATCCCCTTTCTAT
ACATCTCCATAGATAACATTTTTTATTGCATCTATGGTGGCATCTGTATAGATAACTCGATACACTTTTTACCTTTTCAA
TTGTTAATCAGAACTGCATCGGGTTTGCAAACTGTACTTTGTCAGTGTCAGTGTGCATGCAACTGCTACCATGGTCCAGA
ACGAATGGTTGTATTTTTCATTTCAGATTAACAGAGGTTATTTGAAATGTTTTATTTGT--CATTTGCAGCCGCAAGTTG
TATTGCATGAAGAATACTATTGAGAAAAAAAAGGCATTTCTGTGTCGAAATATCACACTCCATTCAGATTGGTATATATG
TACTTCACATTTTCATGGCGTGAACC-ATGATCAATGAAAATTATGAAGCAAAATCAGCTTC-TTTCCTACTACTTTTCC
TTGGTAAATGAACCAAGAAGACTAAATCTACATTTATCAACTTCATCCAGAGGCCTCTTCGTCAAATTATGTATGCCACA
GGTTTGATAATGATCAAAC---CATCAAGAATCAGGAAAAGCCACCACTTGAATCAAAACTTGCAGTTCTTCTTGAGGTA
AACCACCACTTCTTGCTGCAACAAGTGCAGTAAAAGGGTCAATGTTT-GATTCTCAATCTAATAATTCTGCTGTAGTTTC
AGGATAGATGAGATGTACAGTTATTAACTTACAATCAAGCAAAGGATGGCGCAGCCGGCAGCCCCAGGGAAAAGTGCATA
CCAAAGTTGTAAATGGTGAAACTTCGGACCATCAATAAACAGGAGAGGCAAGCTCGCAGCTGCAGTTATCATAAAAAGAG
GTGAGCTTAAAATATTTCTTTGCTGCATTTCGTAGCTGAAAAAAACAAGCCA
>chr4A_1
CGGAATAGCAGTGGGAGCAGTAGCCGGGTTTTTCATCATGTACAAGTACCTAAAGGATAGGAAGATATTGTAGACACCAT
-GCACCATA-TGCGGAATCGCCTAGAAATCTAGAACTGTAAATAAAGCGGTTTTGATCTCTTCTGGAGGCACGTATGGAT
CCATGACATGACATTGTTTTGGTGTGCTGGTGGATGCTTACACATACCAACTTGGGAGAAAGTGTTTTTCTGGATACTGA
TACACACGCCATACC----AAGGAGCAAGTATTTTTCTGCTACTTTGCTGGGAATGTCATCCCCTTATTGAGCTGAGAAG
GGAAAAAATCTGGAA------------------CTTTTATTGATGTTACTGATGATGTTGGAAATTCATGTAAC-ATGTC
CAGAAT-CCAT----------------------------TTTTGCTCCTACCGTGCTCATGGTTGCTGTTTTC-CTGCCC
ATGTTTTTCAGAATCTATTTTTCCTATCATCCAAAACCCGCGACAGCGGTGA--TGATGACAAGCACTTCTGTTGTACTT
ACTCTCTTCGCCGCAAAATGTATGG--------------AGTCTTTAGCTGATAATTATTACTATGTTAGTACATA----
-----GT-----AAATCACAACATGAGTAAATATTTTTGAAAGTGAATCTAGTGACAATTGTGAACACCATTGATTT---
----TGTGAATAGTGCGAGCTCTCTCTGACTCGACCTCCCTAGATGTGCCATACTTATTGCATATCTAATTGAGTGAATT
AAGCATGAAAAGGAAAAGAAAAAAGAAAAAAAATATCCACACCAATCTCAACGTAAGATCAATGATATAGGACTTAGATG
TGCAATACTTATGGCACATCTAGATGTGCTTTAGCAAAACTGTTTTTAATACAAAGACAACACGCGTTTCCCTCTCGAAT
CTCAATGATATGTTCTCTCAAAACAAAATAAAAAATCTCAATGATATGATGTTTTGTCACGCTGCTGCACGGTGTGCCGG
TGGCCATGGGCAAAGGAAGACGAGACTGCGTCTTCCTGCGGGCTCACGGCAGCCGTCGGATCGGCCATCGACGTCCCAGG
ATTTTT--CCCGTAACCGTCACGTCCAGTTCCGCGCAAAGCGCCCCCGAAGCGCGCGGCTGCACGGCTTCTCCGCGCGAC
ACGTATCCACCTAGTACTACATC-CCATCTCCAACCGCCGATGTCGTCGTCGTCGTCGTCCCCGCGGCCGGCGGCGCAGC
GCCGGCGCCTGCACCCAGCCGCCTACCTCTCCGCGGCGGCCGCCCTCCTGGCCCTCGTCGCCGCGGCCTTCTCCCGCGCC
CTCGCCCCCCGCTTCCCCAGCCCGCCCGACGCCCGCCGCTGCCGCCCCGACCCCGAGGGCTCCTGGTCCGCCGGCGTCTT
CCTCGGCGACTCCCCGTTCGCCCTCAAGCCCATCGAACACGTACCTCAACGGCCCCAATTCCCCCCCTAGTCGCGTCGTC
GTCGTCGCTCGTGGCGTTAATTTTGGCTTTCCGTGTGGTTCGCGTGCGTGCAGTGGGGAATCTCGGCGGACGCGGACGCG
GGCGCGGCGTGGCCCGTCGCGAACCCGGCGGTGACGTGCGCGGACGTGGCGGAGGCCGGGTCCCCCAGCAGCTTCGTCGC
CAGCCCCTTCCTCTTCCTCCAGGTTCGAACTACCAAACATCTGGACACCGAGAGGTGAAATCAGCAGTGGTACTTGTGAA
TTGTGATTCGTACCCTGCCGGCCATCTTTCATGTGAATTTTGACAACGACCATGATCGACTCCTGTTCTTGCCCTGATGG
ACGTGAAGCTAAATTCTCCTCAGGGTGATGCCATCTACATGTTTTTCGAGACGAAGAACCCCGTAACATCGCAAGGCGAC
ATTGCCGCTGCCGTGAGCAAGGACGCCGGCGCGACATGGCAGCAGCTGGGCCTGGTGCTAGATGAGGAGTGGCATCTCTC
CTACCCATACGTGTTCAGCTACAATAGCAAGGCAAATATCCCACTCGCAGCTGCTTATTTTATTTGTAACCAACAAGTTC
ATGTTGTAATCATTCTCACATGCGCTTCTTTGCTTGCCTATTGGCTCCACAGGTCTATATGATGCCTGAAAGTAGCAAGA
ACGGAGATCTCCGGTTGTATCGTGCGTTGGATTTCCCCCTTAAGTGGACACTGGAGAAGGTCCTTCTGGAGAAGCCACTT
GTGGATTCAGTCATCATAAATTTCAGGGGTTCCTATTGGCTGCTTGGGTCAGATTTAAGTTCTTATGGTGCGAAGCAGAA
TGGAGAGCTCAGTATCTGGTATAGCAGCTCTCCTCTTGCTCCTTGGAATCCACACAGGCATAATACAATCGGTAGCATGG
ATAACGGGTCGAGTTTTAGAAATGGAGGCAGGCCATTCGTTTATGACGGCGATCTCTATCGTATAGGCAAACAGAGTGGT
GGTGTGTCTGGCCATAGTATTAAAGTGTTCAGAGTAGAAATCCTAACAGCAAATGAATACAAGGAAATTGAGGTCCCATT
TGTCTTTGACAAGCCCCGCAAGGCTCGAAATGCATGGAACGGTGCACGATCCCATCACCTTGATGTTCAATGGCTTCCAT
CAAGTCAACTCTGGATTGGGGTAACGGATGGTGATAGAGTGCCCTCAAACGATTCAGTTCACCGCCTGACCGTAGGGTAC
ATGTTTTATGGAGTCACTCTGTTACTAGTTCTTCTGCTTGGTGGGCTTATTGGTGCAATTAGATGCACGATACCACTCAG
ATGGTATGTTCCACATACTGAGAAACGGGGTGACTTGTTACATGGAAAGCAGCAGTTCTTTCTGAAGTATAAGCTAAGCT
CGCTGTTTTCCAGTTTGAACAAGTTGGGTTCTCTTCTTGGTGGGAGAATCAACTACAGAACTTGGAAGGGACGGGTTTAT
GTTGTGCTAGTAATACTAGTCTTAGTTTTTCTAACTTGTCTTGGAACTCACTGCGTATATGGTGGCAATGGTGCTGAAGA
GCCATATCCAATCAAGGGTAGGTACTCGCAGTTCACGCTGTTAACTATGACATATGATGCCCGTCTTTGGAATCTGAAGA
TGTTTGTGGAGCATTACTCCAAATGTGCATCAGTGAGGGAGATTGTGGTTATCTGGAATAAAGGTCGCCCGCCAGTGCAA
AATGAATTGAAGTCGGCTGTTCCTGTCAGGGTCAGAGTTGAAGATAAGAACACTCTGAACAATAGATTCAACATAGATGA
AAAAATTAACACAAGAGCTGTTATGGAGCTTGATGATGATATCATGATGGCATGTGACGACTTAGAGCGTGGGTTCAAGG
TATGGAGGGAGCACCCTAATAGGATTGTTGGGTACTACCCACGCCTCGCTGAAGGTACTCCACTGGAATACCGCAATGAG
AGGTATGCTCGGCAACAAGGAGGTTATAACATGGTACTGACTGGAGCAGCATTCATGGATCATGGCTTGGCCTTTGAGAG
GTATTGGAGCAAGAAGGCTGAGGTAGGAAGGAAGATGGTAGACAGTTTCTTCAATTGTGAGGATGTCCTTCTAAATTTTC
TGTTTGCAAATGCAAGCTCAATGAGCACGGTGGAGTATGTAAAGCCAGCTTGGGCAATTGATATGTCTAAGTTTTCAGGA
GTAGCCATTAGTCGAAACACACAAGCACATTATCATGTTAGGAGCAAATGCCTTGCTAAATTTTCAGAAGTCTATGGGAA
CTTATCTGCTAAAAGATTCTTTAGCAGTCGAGGTGATGGCTGGGATGTATAGTA---ACAGAGATAACTGGATACCTTTT
TCTTGAGATTTGCATAGTCTGATTGGCTAAGTTTCCAAGTTG-----------------GTA-----------------G
TTCAGGATGAGTAGTGCAACACTGAAGTGACCGTTTGCATAC------------AGTTAAGTATATTATCCCATTTCTAT
ACGTCTCCAAAGATAACATATTTTATCGCATCTATGGTCCCACCTGTATATATTACTGGATACACTTTTTACCTTTTCAG
TTGTTAATCAGAGTTGTATCGGGTTTGCAAACTGTAATTTGTCACTGTCAGTGTGCATGCAACTGCTACCATGGTTCAGA
ATGAATAGTTTGTTTTTTCATTTCAGATTACCAGATGTTGTTGGAAATGTTTTACATTTGCCATTTGCAGTCACAAGCTG
TATTGCATGAAGAATACTATTGGAT-AAAAGAGGTATTTCTGTGTCGAAATATCACGCTCCATTCGGATTGGTATATATG
TACTTCACATTTTCATGATGTGAACCAATGATCAATAACAATTATGAAGCAGAATCAGCTTCTTTTCCTACTACTTTTCC
TTGGTAAATGAACCAAGAAGACTAAATCTACATTTATCAACTTCATCCAAAGGCCGCTTCGTCAACTTATGTATGCCTCA
GGTTTGATAATAATCAAACAACCATCAAGAATCAGGAAAAGCCACCGCTTGAATCAAAACTTGCAGTTCTTCTTCAGGTA
AACCACCACTTCTTGCTGCAACAAGTGCAGTAAAAGGGTCAATGTTTTGATTCTCAATCTAATAATTCTGCTGTAGTTTC
AGGATAGATGAGATGTACAG---TTAACTTACAATCAAGCAAAGGATGGCGCAGCCGGCAGCCCCAGGGAAAAGTGCATA
CCAAAGTTGTAAGTGGTGAAACTTCGGACCATCAATAAACAGGAGAGGCAAGCTCGCAGCTGCAGTTATCATAAAAAGAG
GTGAGCTCAAAATATTTCTTTGCTGCATTTTGTAGCTGAAAAAAAGAAG---
>SNPs
--------------------------------------------------------------------------------
------------------------------------------------------------------------S-------
-----S--------------------------------------------------------------S---SSSSSSSS
SS-----------------S--------------------S---------------------------------------
S---------S----SSSSSSSSSSSSSSSSSS-----------------------------------------S-----
-------------------S--------SS-S------S-S------S----------S---S--------------S-S
S--------------------S-S---------S--S------S-S---SSSSS-----SS---S------------S--
------------------------------------------------SSSSSS-S--S--------S-SSSSSSSSSSS
-SSSSSSSSSSS-----------------S--------SS--SSSSS--SS-----------------------------
--------------------------------------------------------------------------------
------------------------------SSS-SSSS-SS-S-S-S-SSS-SSSSS-SS--SSSS-SSS--SSSSSSSS
SSS--SSSS-SSSSSSS--SSS-SSSSSS-SSSSS--S-SS---S-S---SSSSSSSS-SSSSSSSSSSSSSSSSSSSSS
SSS-S-SSSSS--SSSS-SS--SSSSSSSSSSS----------------S--S--S--S--------------SSS-SS-
---------------------------------------------------------------SS---------------
------------S----------SS-S-SSS-S-SS--------------------S-------S---------------
-----------------------S--------------------------------------------------------
-----------------------------------------S----------S---------------------------
----S--------------S------------------------------------------------------------
------------------------------------------------------S-------S-----------------
----------------------S---------------------------------------------------------
------------S-S------------------------------------S--S-S--S--------------------
----------------------------------------S-------------------S------SS--SS-------
---------------------------S---------------S--SSS-------------S-----S--S--------
-S---------S-------------S----S------------S-------------------S---------S------
--------------------------------------------------------------------------------
----------------------------------------------S---------------------------------
S----SS-------------S--S--------------SSSS---------------S-----------------S----
--------------------------------------------------------------------------------
-----------------------------------------SS-------------------------------S-----
---------------------------------------S----------------------------------------
----------------------------------S---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------S---------------------S-------S------------------------------
--------------------------------------------------------------------------------
-----------------------------S------------------------------------------------S-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------S--------S----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------S-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----S-------------------------------------------------------S------------------S
----------S----S--------------S---S-------SSSSSSSSSSSSSSSSS---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------S------------------------------------
--------------------------------------------------------------------------------
-------------------------------S------------------------------------------------
-------------------------------------------S------------------------------------
--------------------------------------------------------------------------------
---------------------------------------S----S-----------------------------------
--------------------------------------------------------------S-----------------
----S------------------------------------------------------------------S--S--S--
---------------------------------------------------------------S----------------
------------S-------------------------------S-------
>forward_874
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------GGCAAAAACCGGAGTCGAAC------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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----------------------------------------------------
>reverse_1852
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------CATTCTCCTCAGGGCGATGG-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------
>forward_975
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------TCTGG
GCAAGTAGGGGGTAA-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------
>reverse_2690
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------TGATTCAGTTCACCGCCTGA-----------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------
>forward_1871
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------CATTCTCCTCAGGGCGATGG-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------
>reverse_3095
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------------------CGATGCCCGGCTTTGGAATC------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------
>forward_2435
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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---------------TTAGAAATGGAGGCAGGCCC---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------
>reverse_4124
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------CCTGTCAGTGTGCATGCAAC-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------
