>input_sequence_30939
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--ATGGCGGACAAGGAGCCCGTCGTGGAGCGCCCCGTCGCGGAGGAGGAAGGCGAGGACTCCGCCGCCGCGGCCGCCGCC
GGCGAGGAGGAGGACACCGGTGCCCAGGTCGCCCCCATCGTGCGGCTCGAGGAGGTCGCCGTCACCACCGGCGAGGAGGA
CGAGGACTCTCTCCTCGACATGTAAGCCCCCCCGCGTTCCCCCTAGGTTTGCTCGTT-CGGCTCGATCTGGCGCTGATTT
TGGGACGGGTTCGTGCGGCGGTGCGCAGGAAGGCGAAGCTATACAGGTTCGACAAGGACGGGAACCAGTGGAAGGAGAGG
GGCACGGGCACCGTCAAGCTGCTCAAGCATAAGGAGAACGGCAAGGTCCGCCTTGTTATGCGCCAGGCCAAGACGCTTAA
GATCTGCGCCAACCACCTAGGTTTGCAGTTGTTTCCTCAGATTTTGCT-CCTTTATTTCCGATCTCTCAGCTGCTTCAAG
TAGATTCATCACAGGATCTCATCTGACGGTTATGGCCTTGATCCTCTGTGTGTGCAGTGATCTCGACCACGAAGATGCAG
GAACACGCCGGCAGCGACAAGTCCTGTGTCTGGCACGCGGCAGACTTTGCTGACGGAGAGCTTAAGGATGAGATGTTTGC
CATCCGGTTTGGCACCGTGGAGAGTGAGTTCTCAACTCTGTTTCCGCATGGGTGTGTCTTGCGTGGGTGGCTTGGTTGGA
TAACATGCTAGATCACCCTGTTTGTAGCATTAGTAGTTTCTTCTGTATGCTTTGTGAGACACTAGTGAAACATGACCTGG
TTACATTCTATAGCTGAACCTTGTGTTTTGTCTTGACCACGTGAATTTTTCTTTTACCAATTTATTATTTGCAAGGCTCA
GTGGATCATCAGCAAAACAACATATTTAGGGTGTGTGTTGGCACTCTTTATCAGAAATTACATCTTAAGCATGTGATCTT
GTAGTAATCTACTATTTGGGATAAAGGATCATAAAAAATACCTTTCATGATTGGGGGTAGGTGGATTGGGTATAATAAGG
GTAACGTTCCAAGAGGCAAGGCCATTCCTTGTCAGAGTGAAGGTGACACGACCACAACCTATCATTGTTTTCATGTGACT
CTTGATGTTTTTGAATTTGTAACATTCAAGGTTCTTCTAAATTTAAGTTGTAACGTCCTAGCTATATCATAATATCATGT
CTCAATTTTATCGTTTTGCTGTAG-TCCACATGGAAGTTCTTTTTGCCACTTTGTTTATGTTAGTGGTCACAGGGATCCT
CTCTAATTGACATTTTTAATTCCAGTTGACGAGTACTTGTACATTAATTAAAGTATTTCCACCTGTAAAGTATGATTGAT
ATTTGTAGCTTCAAAATTGCATCTTTTTT-GCGGCCTTGTGGGTCGCTGCAATCAAGATCTGGTTGTAACCTGTTAGAAC
TTTTTAGGGATGAGAAGTTGCAAACTT-GTAGTTTCATAGGTTCCTGACATAATTTGGAATAATGCACTGTCCTAGTTCT
TTTGTTTCGTGTTGTTTCCCCCACTAGTAGCCAT-----------GATAAA--TGGTGTATGCTAGCTCTGC--------
CACACACGTTAGTCTTTGTTTTAAGTCATGCTCAATGCAGCATTTTGTGTGTAATTCTGTGAAATACTATAATTAGGCAT
ATAATGTCTTGTTTAACCTATTGACTTGCTCAGTATTTATTGTGTAGTATTTCTTATTTCATCCAAGTAGCAGTTGCGTG
TTTAGATATATAAATGTTCTGTTGCTACTTATGGCTGTCGTTCAATCTTATTTTTAGCTATAACGTCTCTCCTGCAAATC
TCCCTGATACCCTGTTCAAGTAGTCATGTTTAAGCTGCATAGGGAGCCTTTGGATCATTAGCTCACCTAGT-----TAGG
CTAGGCTCCACTGGCCTGTTTGAGCTATACCCCACCCAGGCGGAGCTACTTGTTTGATATGTGGTTAGCTAATCCAATCT
GAGCATATTCAAGCAGCAGTATCTTCACCCACTAGCAGGACAACAGTTTAACTCTGCATTTTTCTCTGTTATTGCTGTCA
GAAGAGAGCTGCGTAGGCTCTCCCAGTGGAGT-AAAGATTTTCTAGCCCAGAATTGCTTGGTAAAATTAACTTTCCTCTA
CCAAACACCCAGGGTTAGCATTAACATTTAGGAACTAAACACACCTGCAGTGTTTTCCATGTGTTGCCCCAGTCAACCAG
AGGTCAACTTT-AGTTGTGCAATTTCTTTTGCTCTATGCCACCGTAGTGATAGTGTGCTGATGCTCCATATTTATGTTTT
ACCAAGTGCAGACTTTGAAACTAGTTGAATGTCTCTGCTAATGACTCCCTT---GTCTATTTTTTAGATTGCAAGAAGTT
TAAGGACTTGGTTGACGAGATCGCTGAGTCGCTTGCAAAGAATGAGGGCGGTGAAAGCGAAGAAGGTTCTTCTGCGGCCG
GACTGCTGGAGAAACTTAGTGTAAGCGAAAGCAAACCTGAGGAAAGTGCAGCTAAGGAGGAATCGACTGATGCTAGCAAG
GAGACAGAAACCAAAGCCGCAACAGCCCCCTCAGAGTAG-----------------------------------------
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>chr1A_1_TraesCS1A01G223800
TAAAGGAGAGGTTTATAAGAAAATGTGACAAAGGAAAAAAACAC--TAGCGACATCGGTAATATTTTGTTGCAAAACTTG
TTCTATCTCAAGCATTAGATCGTTATG--TCTGGTTGCAAAGAT--TGTGAACATAATTTTTTTCAACACTAGTCTGGAT
TTTTCCT--AAGGATGGCACTAGTCTAGACTTAATTATGTACTACCTT-AAAACATTTTGGATGACTAAAAGTTGTTCAC
CTCTTTCTCGAGTCGTAGTTTAGATTAGATAGATAAGTTGCTTATAATGGAATCTGTATTCAAGTTTTATATCTTACACG
GGTGTTTGCAATTTTTTGGATTTGTTGCAGATCTGTATGTTCAGCGGGAGACAATGTACATGTCGACTACAAGTTATGTG
TGATGATTTTGCAACTATTGTAAAGAACGAATTGAGCGTAACTGTGATGGTTTAAGTTTTAGACTTAGCATTGGTGGTCA
CATTTCCCAGAATTTATTTCAATTATTCCGGTGATGTGCATTTGGTACGATGAGACATTTCCGTCAACTTCAAAGGCGTT
TATGGCAACTTTGTTAATCTTAAGAGGAACTCAGTCTCTAAGAGCCTTCATAGGGTGAGGGTATGAACTAGTAACAAATA
ATTTGTTC-AAAATTTAAAAAGTCACGAAAGAAAAG------------------------GGACAAAGAAAAGCTATTTT
TAATGAAAAAA--AAAGAGAAAAATTGTTGGAAGAAAAACTGACGCCGTTGCTAATCGGTAGTGGCGTTGCTAACACGCA
GTTCAGACGGTGACCCT--ACGCCAGGGCCTCGCCC-ATTACGCTTCCAGCGGGCCCCACTTATGTGGCGGCGCCTCTCC
CTCCGTGGTACACAAAAACCCTAGCGCACTGCCCTTTTACGGCCG-CCCCCCTCCTCTCGACCGACCTCCCAATACTTCC
CTAGGCGTCTCCCTTCGTCC--CCCCCTCTCGCCGCCGCGTCGACTCGGAAGTAACAAGCGCGCCGCCGCCCAACCCTTC
CGATGGCGGACAAGGAGCCCGTCGTGGAGCGCCCCGTCGCGGAGGAGGAAGGCGAGGACTCCGCCGCCGCGGCCGCCGCC
GGCGAGGAGGAGGACACCGGTGCCCAGGTCGCCCCCATCGTGCGGCTCGAGGAGGTCGCCGTCACCACCGGCGAGGAGGA
CGAGGACTCTCTCCTCGACATGTAAGCCCCCCCGCGTTCCCCCTAGGTTTGCTCGTT-CGGCTCGATCTGGCGCTGATTT
TGGGACGGGTTCGTGCGGCGGTGCGCAGGAAGGCGAAGCTATACAGGTTCGACAAGGACGGGAACCAGTGGAAGGAGAGG
GGCACGGGCACCGTCAAGCTGCTCAAGCATAAGGAGAACGGCAAGGTCCGCCTTGTTATGCGCCAGGCCAAGACGCTTAA
GATCTGCGCCAACCACCTAGGTTTGCAGTTGTTTCCTCAGATTTTGCT-CCTTTATTTCCGATCTCTCAGCTGCTTCAAG
TAGATTCATCACAGGATCTCATCTGACGGTTATGGCCTTGATCCTCTGTGTGTGCAGTGATCTCGACCACGAAGATGCAG
GAACACGCCGGCAGCGACAAGTCCTGTGTCTGGCACGCGGCAGACTTTGCTGACGGAGAGCTTAAGGATGAGATGTTTGC
CATCCGGTTTGGCACCGTGGAGAGTGAGTTCTCAACTCTGTTTCCGCATGGGTGTGTCTTGCGTGGGTGGCTTGGTTGGA
TAACATGCTAGATCACCCTGTTTGTAGCATTAGTAGTTTCTTCTGTATGCTTTGTGAGACACTAGTGAAACATGACCTGG
TTACATTCTATAGCTGAACCTTGTGTTTTGTCTTGACCACGTGAATTTTTCTTTTACCAATTTATTATTTGCAAGGCTCA
GTGGATCATCAGCAAAACAACATATTTAGGGTGTGTGTTGGCACTCTTTATCAGAAATTACATCTTAAGCATGTGATCTT
GTAGTAATCTACTATTTGGGATAAAGGATCATAAAAAATACCTTTCATGATTGGGGGTAGGTGGATTGGGTATAATAAGG
GTAACGTTCCAAGAGGCAAGGCCATTCCTTGTCAGAGTGAAGGTGACACGACCACAACCTATCATTGTTTTCATGTGACT
CTTGATGTTTTTGAATTTGTAACATTCAAGGTTCTTCTAAATTTAAGTTGTAACGTCCTAGCTATATCATAATATCATGT
CTCAATTTTATCGTTTTGCTGTAG-TCCACATGGAAGTTCTTTTTGCCACTTTGTTTATGTTAGTGGTCACAGGGATCCT
CTCTAATTGACATTTTTAATTCCAGTTGACGAGTACTTGTACATTAATTAAAGTATTTCCACCTGTAAAGTATGATTGAT
ATTTGTAGCTTCAAAATTGCATCTTTTTT-GCGGCCTTGTGGGTCGCTGCAATCAAGATCTGGTTGTAACCTGTTAGAAC
TTTTTAGGGATGAGAAGTTGCAAACTT-GTAGTTTCATAGGTTCCTGACATAATTTGGAATAATGCACTGTCCTAGTTCT
TTTGTTTCGTGTTGTTTCCCCCACTAGTAGCCAT-----------GATAAA--TGGTGTATGCTAGCTCTGC--------
CACACACGTTAGTCTTTGTTTTAAGTCATGCTCAATGCAGCATTTTGTGTGTAATTCTGTGAAATACTATAATTAGGCAT
ATAATGTCTTGTTTAACCTATTGACTTGCTCAGTATTTATTGTGTAGTATTTCTTATTTCATCCAAGTAGCAGTTGCGTG
TTTAGATATATAAATGTTCTGTTGCTACTTATGGCTGTCGTTCAATCTTATTTTTAGCTATAACGTCTCTCCTGCAAATC
TCCCTGATACCCTGTTCAAGTAGTCATGTTTAAGCTGCATAGGGAGCCTTTGGATCATTAGCTCACCTAGT-----TAGG
CTAGGCTCCACTGGCCTGTTTGAGCTATACCCCACCCAGGCGGAGCTACTTGTTTGATATGTGGTTAGCTAATCCAATCT
GAGCATATTCAAGCAGCAGTATCTTCACCCACTAGCAGGACAACAGTTTAACTCTGCATTTTTCTCTGTTATTGCTGTCA
GAAGAGAGCTGCGTAGGCTCTCCCAGTGGAGT-AAAGATTTTCTAGCCCAGAATTGCTTGGTAAAATTAACTTTCCTCTA
CCAAACACCCAGGGTTAGCATTAACATTTAGGAACTAAACACACCTGCAGTGTTTTCCATGTGTTGCCCCAGTCAACCAG
AGGTCAACTTT-AGTTGTGCAATTTCTTTTGCTCTATGCCACCGTAGTGATAGTGTGCTGATGCTCCATATTTATGTTTT
ACCAAGTGCAGACTTTGAAACTAGTTGAATGTCTCTGCTAATGACTCCCTT---GTCTATTTTTTAGATTGCAAGAAGTT
TAAGGACTTGGTTGACGAGATCGCTGAGTCGCTTGCAAAGAATGAGGGCGGTGAAAGCGAAGAAGGTTCTTCTGCGGCCG
GACTGCTGGAGAAACTTAGTGTAAGCGAAAGCAAACCTGAGGAAAGTGCAGCTAAGGAGGAATCGACTGATGCTAGCAAG
GAGACAGAAACCAAAGCCGCAACAGCCCCCTCAGAGTAGTGGGCAGAGCAACGCCCGTCACAATGGTACTGCTGAGCATT
GCTCGGTGGCATGAGTCAGTTTGTCGGTCCTTCCTGTCGACGGAAGTTGGTAGTCGTTGACGATGAAATATGCTGAGAAC
TTTTTGTGACAGTCAGAAGGTGTCTTGAGCAGAGTCCATCTTCACCCCCG-CTGGGTGTTCACGCGTCTGAGTATTTATT
GTTATGTAAAATATCTGCTCGCATGTCTTTTGGATGGTGTTGTCTTGCTTTTGTCAAGAACTTGAAATGTAGTCCATGAG
TATTGAGTTTGGAACATTTTGGGTTTGAATTGTGGGTATTTGAGTTGCATGTGCTGGTTATGGATTGCATACAGC---TT
ATAAATTACTTGCTATATTATTTTTGCACATTTGATATGCCAGTTCCTTGTTGGTTTGTTCTTCTTACATGTGAGAAGCA
GTTCCTTGGTTTGTTCTTAT--------------------AAAGTTTGAAGTCAGTAGATTTGGATACATTAGAGCTGAA
ACTGTACAAAAGAAAACTTAGTTGCGTAATCTTCACGGAGCATATTTGGTGCCAGTTTATATTGTTTTTACTTTT-TTTG
AGGGAGTTTATATTGTTTTACTACTATGGCAAGTATCAGACCATCTACAATAGGACCCCTCGACCCTCCACGGCTCCACC
TATATGTCCGGGTAGATGAGTCCTATGTCCATCTACTCGGTCATGAAAACCTGTCCTATGTCCGGGCTGTGGCACTTCAA
AAATCCAACCCATGTGTGGGTGGATATAGGGACGGGAATGGTCCATTCCAAATCTCTTCAAGACGTCTCCGTCCTAGCTT
GAACTGCCCTCTCTCCTTTCACCCGTCTCTTCCGCACAGTTGTCACCGTAGATCCGCCGCCACCCTAGCTACATCATTGT
CTGGGTGCCCCAACCCACAAAGTCGCCAACCGTGCTGTCACCGGACAAGGTCTTATATGTCACTCTTCCGGACATACACA
TTGGGCTCTATGTGTTTGACGGAA
>chr1B_1
TAAAGGAGAGG-TTATAATAAAATGTGATAAAGGAAAAAAAAACAATAGCGACGTCGGTAATATTTTGTCGCAAAACTTG
TTCTATCTTAACCATTAGATCAATATATATCTGGTTGCAAAGATTGTGTGAACATAGTTTTTCTTACACATCAGTCTG-T
TTTTTTT--AAGGATCGCACTAGTCTAGGCTTAATTATGTA---CCTT-AAAACATTTTGAATGACTAAAAGTTGTTCAC
CTCTTCCTCGAGTCGTAGTTT-----AGACAGATAAGTTGCTTATAATGGAATTTGTATTCAAGTTTTATATCTTACACG
GGCGTTTGTAATTTTTTGGATTTGTTTCAGATTTTTATGTTCAGTGGGAGACAATGTACATGTTGACCACAAGATATGTG
TGGTGATTTTGCATCTAATGTAAACAACGAACTGAGCGTAATTGCAAT-GTTCAAGTCTTAGGCTTAGCATTG-TGGTCA
CATTTCTCTGAATTTATTTCAGTTCTTTCGGTGATGTACGTTCAGTGCGAGGAGACATCCCTGTCGACTTCAAAGTCGTT
TGTGGCAACTTTGTCAATCTTAAGATGAACTCAGTCTCTAGGAGCCTTCATAGGGTGAGTGTATGAACTAGTAACAAATA
ATTTGTTCAAAAATTTAAAAAGTCACAAAAGAAAAGTTTTATTTATGGGATTTCCGGAAGGGACAAAGAAAAACTATTTT
AAGTTGAAAAA--AAAGA-AAAGATTGTTGGAAGAAAAACTGACGCCGTTGCTAATCGGCAGTGGCGTTGTTAACACGCA
GCTCAGGCGATGACCCTACACGCCAGGGCCTCGCCC-ATCACGCTTCCAGTGGGCCCCACTTCTGTGGCGGCGCCTCCCC
CTCCGTGGTACACAAAAACCCTAGCGCACTGCCCTTTTACGGCCG-CCCC-CTCCTCTCGACCGACCTCCCAAAACTTCC
CTAGGCGTCTCTCTTCGTCCCTCCCCCTCCCGCCGCCGCGTCGACTCGGAAGTAGCAAGCGCGCCGCGGCCCAACCCTTC
CGATGGCGGACAAGGAGCCCGTCGTGGAGCGCCCCGTCGCGGAGGAGGAAGGCGAGGACTCCGCTGCCGCGGCCGCCGCC
GGCGAGGAGGAGGACACCGGTGCCCAGGTCGCCCCCATCGTGCGGCTCGAGGAGGTCGCCGTCACCACCGGCGAGGAGGA
CGAGGACTCTCTCCTCGACATGTAAGCTCCCCCGCGT-CCCCCTAGGTCTGCTCGTTTCCGCTCGATCTGGCGCTGATTT
TGGGATTGGTTCGTGCGGCGATGCGCAGGAAGGCGAAGCTATACAGGTTCGACAAGGATGGGAACCAGTGGAAGGAGAGG
GGCACGGGCACCGTCAAGCTGCTCAAGCATAAGGAGAACGGCAAGGTCCGCCTTGTTATGCGCCAGGCCAAGACACTTAA
GATCTGCGCCAACCACCTAGGTTTGTGGTTGTTTCCTCAGATTTTTGCCCCTTTATTTCCGATCGCTCAGCTGCTTCAAG
TAGACTCATGACAGGATCTCGTCTCACGGTTATGGCCCTGATCCTCTCTGTGTGCAGTGATCTCGACCACGAAGATGCAG
GAACACGCCGGCAGCGACAAGTCCTGTGTCTGGCACGCGGCAGACTTTGCTGACGGAGAGCTTAAGGATGAGATGTTTGC
CATCCGGTTTGGCACCGTGGAGAGTGAGTTCTCAACTCTATTTCCGCGTGG--GTGTCTTGCGTGGTTGACTTGGTTGGA
TAACATGCTAGATCACCCTGTTTGTAGCATTAGTAGTTTCTTCTGTATGCTTTGTGAGACACTAGTGAAACATGACCTGG
TTACATTCTATAGCTGAACGTTGTGTTTTGTCTTGAGCACGTGGATTTTTCTTTTAGCAATTTAGTATTTACGAGGCTCA
GTGAATCATCAGCAATACGACATATTTAGGGTGTGTGTTGGCACTCTTTATCAGAAATTACATCTTAAGCATGTGATCTT
GTAGTAATCTACTATTTGGGATAAAGGATCATAAAAAATACCTTTCATAATTGGGGGTAGGTGGATTGGGTATAATAAGA
GTAACGTTCCAAGAGGCAAGGCCGTTACTTGTCATAGTGAAGGTGACACGATCACAACCTATCATTGTTTTCATGTGACT
CTTGATGTTTGTGAATCTGTAACATTCAAGGTACTTCTAAATTTAAGTTGTAACGTCTTAGCTATATCATAATATCATGT
CTCGACTTTACGGTTTTGCTGTAGATCCACATGGAAGTTATTTTTGCTGCTTTGTTTATGTTAGTGGTCACAGGGATCCT
CTCTAATTGACATTTTTAATTCCAGTTGCCGAGTATTTGTACATTAATTAAGGTATTTCCAGTGGCAAAGTATGATTGAT
ATTTGTAGCTTCAAAATTGCACCTTTTTTTGCGGCCTTGT-GGTTGCTACAATCAAGATCTGGTTGTAACCTGTTACAAC
TTTTTAGGGATTTTAAGTTGCAAACTTGGTAGTTTCATAGGTTCCTGACATGATTTGGAATAATGCACTGTCCCAGTTCT
TTTGTTTCGTGTCGTTTTCCCCACTAGTAGCCATGCCTGATTTGTGATAAAAATGGTGTATGCTAGCTCTGCGCCTCTGC
CACACGCATTAGTCTTTGTTTTTAGTCATGCTCAATGCAGCATTTTGAGTGTGATTCTGTGAAGTACTATAATTAGGCAT
ATAATGTCTTGTTTAACCTATTGACTTGCTCAGTATTTATTGTGTAGTATTTCTTATTTCATCCAAGTAGCAGCTGCGTA
-TTAGATATATAAATGTTCTGTTGCTACTTATGGCTGTCGTTCAATCTTATCTTTAGCTATAACA--TCTCCTGCAAATC
TCCCTGATACCCTGTTCAAGTAGTCATGTTTAAGCTGCATAGGGAGCCTTTGGATCATTAGCTCACCTAGT-----TAGG
CTAGGCTCCACTGGCCTGTTTGAGCTATACCCTACCCAGGCAGAGCTACTTGTTTGATATGTGGTTAGCTAATCCAACCT
GAGCATATTCAAGCAGCAGTATCTACGCCCACTAGCAGGACAACAGTTTAACTCTGCATTTTTCTCTGTTATTGCCGTCA
GAAGAGAGCTGCATAGGCTCTCCCAGTGGAGTAAAAGATTTTCTAGCCCAGAATTGCTTGGCAAAATTAACTTTCCTCTA
CCAAACACCCAGGGTTAGCATTAACGTTTAGGAACTAAACACACCTGCAGTGTTTTCCATGTGTTGCCCCAGTCAACCAG
AGGTCAACTGAAAGTTGTGCAATTTCATTTTCTCTATGCCACCATAGTGGTAGTGCGCTGATGCTCCATATTTATGTTCT
ACTAAGTGCAGACTTTGAAACTAGTTGAATGTCTCTGCTAATGACTCCCTT---ATCTATTTTTTAGATTGCAAGAAGTT
TAAGGACTTGGTTGACGAGATCGCTGAGTCGCTTGCAAAGAATGAAGGCGGTGAAAGCGAAGAAGGTTCTTCCGCAGCTG
GACTGCTGGAGAAACTTAGTGTAAGCGAAAGCAAACCTGAGGAAAGTGCAGCTAAGGAGGAATCAACTGATGCTAGCAAG
GAGACAGAAACCAAAGTCGCGACAGCCCCCTCAGAGTAGTGGGCAGAGCAACGCCCGTCACAATGTTACTGCTGAGCATT
GCTCGGTGGCAAGAGTCAGTTTGTTGGTCCTTCCTGTCGACGGAAGTTGGTAGTTGTTGACGATGAAATATGCTGAGAAC
TTTTTGAGACAGTCAGAAGGTGTCTTGAGCAGAGTCCATCTTCACCC-CG-CTGGGTGTTCACGCGTCTGAGTATTTATT
GTTATGTAAAATATCTGCTCGCATGGCTTTTGGATGGTGTTGTCTTGCTTTTGTCAAGAACTCGAAATGTAGTCCATGAG
TATTGAGTTTCGAACATTTTGGGTTTGAATTGTGGGTATTTGAGTTGCATGTGCCGGTTATGGATTTTATACAAC---T-
ATAAATCATTTGCTATATCATTTTTACACATTTGATATGCCAGTTCCTTATTCGTTTGTTTTTCTTACATGTGAGAAGCC
GCTCCTTATCGTTGGTGTGCAGCTATCATGCGCCTGTTACAAAGTATGAAGTCAGTAGATTTGCATACGTTAGAGCTGAG
ACTGTACAAAAGAAAACTTAGTTGCGTAATCTTGACGGAGCATATTTGGTGCCAGTTTATATTATTTTTACTTTTATTTG
AGGGAGTTTATATTGT--------TATGGCAAGTATCAGATCATCTACAACCGAACCCTTTGACCCTCCAC---------
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------------------------
>chr1D_1
TAAAG-AGAGG-TTATAAGAAAATCTAATAAAGG--AAAAAAACATTAGTGACGTCGGTAATATTTTGTTACAAAACTTA
TTCTATCTCAAGCATTAGATCGATATG--TCTGGTTGCAAAGGTTGTGTGAACATAGTTTTTTTCCACACTAGTCTGGAT
TTTTTTCCCAAGGATGGCACTAGTCTAGACTTAATTATGCA---CCTTAAAAACATTTTGAATGACTAAAAGTTGTTCAC
CTCTTTCTCGAGTCGTAGTTT-----AGATAGATAAGTTGCTTATAATGGAATTTGTATTCAAGTTTTATATCTTACATG
GGTGTTTGTAATTTTTTGGATTTGTTTCAGATTTTTATGTTTAGCGGGAGACAATGTACATGTGGACTACAAGATATGTG
TGGTGATTTTGCAACTATTGTAAACAACGAACTGAACGTAACTACGATGGTTCAAATCTTAGGCTTAGCATTGGTGGTCA
CATTTTTCTGGATTTATTCCAGTTCTTTCGGTGATGTGCGTTCAGTGCGACCA----------TCGACTTCAAAGTCATT
TGTGGCAAGTTTGTCAATCTTAATATGAACTCAGTCTCTAGTAGCCTTCATAAGGTG--------AACTAGTAACAAATT
ATTTATTC-AAAATTTTAAAAGTCACAAAAGAAAAGTTTTTTTTTTGTATGTCCCGGAAGGGGCAAAGAAAAGCTATTTT
TAGTTGCAAAAGAAAAGA-AAAGATTGTTGGAAGAAAAACTGACGCCGTTGCTAATCGGCAGTGGCGTTGTTAACACGCA
GTTCCGACGGTGACCCT--ACGCCAGGGCCTCGCCCCATCACGCTTCCAGTGGGCCCCACTTCTGTGGCGGCGCCTCCCC
CTCCGTGGTACACAAAAACCCTAGCGCACTGCCCTTTTACGGCCGCCCCC-CTCCTCTCGACCGACCTCCCAAAACTTCC
CTCGGCGTCTCTCTTCGTCC--CCCCCTCTCGCCGCCGCGTCGACTCGGAAGTAGCAAGCGCGCCGCCGCCCAACCCTTC
CGATGGCGGACAAGGAGCCCGTCGTGGAGCGCCCCGTCGCGGAGGAGGAAGGCGAGGACTCCGCCGCCGCGGCCGCTGCC
GGCGAGGAGGAGGACACCGGTGCCCAGGTCGCCCCCATCGTGCGGCTCGAGGAGGTCGCCGTCACCACCGGCGAGGAGGA
CGAGGACTCTCTCCTCGACATGTAAGCTCCCCCTCGTCCCCCCTAGTTCTGCTCGTTTCGGCTCGATCTGGCGCTGATTT
TTGGACGGGTTCGTGCGGCGATGTGCAGGAAGGCGAAGCTATACAGGTTCGACAAGGATGGGAACCAGTGGAAGGAGAGG
GGCACGGGCACCGTCAAGCTGCTCAAGCACAAGGAGAACGGCAAGGTCCGCCTTGTTATGCGCCAGGCCAAGACACTTAA
GATCTGCGCCAATCACCTAGGTCTGTAGTTGTTTCCTCAGATTTTGCT-CCTTTAGTTCCGATCGCTCAGTTGCTTCAAG
TAGATTCATCACAGGATCTCGTCTCACGGTTATGGCCTTGATCCTCTCTGTGTGCAGTGATCTCGACCACGAAGATGCAG
GAACACGCCGGCAGCGACAAGTCCTGTGTCTGGCACGCGGCAGACTTTGCTGACGGAGAACTTAAGGATGAGATGTTTGC
CATCCGGTTTGGCACCGTTGAGAGTGAGTTCTAAACTCTATTTCCGCGTGCGTGTGTCTTGCGTGGTTGACTTGGTTGGA
TAACATGCTAGATCACCTTGTTTGTAGCATTAGTAGTTTCTTTTGTATGCTTTGTGAGACACTAGTGAATCCTGACCTGG
TTACATTCTATAGCTGAACGTTGTGTTTTGTCTTGAGCACGTGAATTTTTCTTTTAGCAATTTAGTATTTACGAGGCTCG
GTGAATCATCAGCAAAACAACATATTTAGGGTGTGTGTTGGCACTCTTTATCAGAAATTACATCTTAAGCATGTGATCTT
GTAGTAATCTACTATTTGGGATAAAGGATCATAAAAAATACCTTTCATGATTGGGGGTAGGTGGATTTGGTATAATAAGG
GCAATGTTCCAAGAGGCAAGGCCATTCCTTGTCATAGTGAAGGTGACACGACCACAACCTATCATTGTTTTCATGCGACT
CTTGATGTTTGTGAATTTTTAACATTCAAGGTTCTTCTAAATTTAAGTTGTAACGTCCTAGCTATATCATAATATCATGT
CTCAA-----CGGTTTTCCTGTAGATCCACATGGAAGTTCTTTTTGCTGCTTTGTTTATGTTAGTGGTCACAGGGATCCT
CTCTAATTGACATTTTTAATTCCAGTTGCCGAGTATTTATACATTAATT-AAGTATTTCCAGTGGTAGGGTATGGATGAT
ATTTGTAGCTTCAAAATTGCACCTTTTTT-GCCGCCTTGTGGGTCGCTGCAATCAATATCTGGTTGTAACCTGTTACAAC
TTTTTAGGGATGATAAGTTGCAAACTT-GTAGTTTCATAGGTTCCTGACATAATTTGGAATAATGCACTGTCCCAGTTCT
TTTGTTTCGTGTTGTTTTCCCCACTAGTAGCCATGCCTGATTTGTGATAAA--TGGTGCATGCTAGCTCCGC--------
CACACATGTTAGTCTTTGTTTTTAGTCATGCTCAATGCAGCATTTTGATTGTGATTCTGTGAAGTACTATAATTAGGCAT
ATACTGTCTTGTTTAACCTACTGACTTGCTCAGTATTTCTTGTGTAGTATTTATTATTTCATCCAAGTAGCAGCTGCACA
TTTAGATATATAAATATT---TTGCTACTTATGGCTGTCGCTCAATCTTATCTTTAGCTATAACATCTCTCCTGCAAATC
TCGCTGATACCCTGTTCAAGTAGTCATGTTTAAGCTGCATAGGGAGCCTTTGGATCATTGGCTCACCTAGTTTACCTAGG
CTAGGCTCCACTGGCCTGTTTGAGCTATACCCTACCCAGGCAGAGGTACTTGTTTGATATGTGGTTAGCTAATCCAACCT
GAGCATATTCAAGCAGCAGTATCTACACCCACTAGCAGGACAACAGTTTAACTCTGCATTTTTCTCTGTTATTGCCGTCA
GAAGAGAGCTGTATAGGCTCTCCCAGTGGAGT-AAAGATTTTCTAGCCCAGAATTGCTTGGCAAAATTAACTTTCCTCTA
CCAAACACCCAGGGTTAGCATTAACGTTTAGAAACTAAACACACCTGCAGTGTTTTCCATGTGTTGCCCCAGTCAACCAG
AGGTCAACTGAAAGTTGTGCAATTTCTTTTGCTCTATGCCACCATAGTGATAGTGTGCTGATGCTCCATATTTATGTTTT
ACTAAGTGCAGACTTTGAAA-TAGTTGAATGTCTCTGCTAATGACTCCCTTCTTATCTATTTTTTAGATTGCAAGAAGTT
TAAAGACTTAGTTGATGAGATCGCTGAGTCGCTTGCAAAGAATGAAGGCGGTGAAAGCGAAGAAGGTTCTTCCGCAGCTG
GACTGCTGGAGAAACTTAGTGTAAGCGAAAGCAAACCTGAGGAAAGCGCAGCTAAGGAGGAATCAACTGATGCTAGCAAG
GAGACAGAAACCAAAGCCGCGACAGCCCCCTCAGAGTAGTGGGCAGAGCAACGCCCGTCACAATGGTACCGCTGAGCATT
GCTCGGTGGCAAGAGTCAGTTTGTCGGTCCTTCCTGTTGACGGAAGTTGGTAGTCGTTGACGATGAAATATGCTGAGAAC
TTTTTGAGACAGTCAGAAGGTGTCTTGAGCAGAGTCCATCTTCACCC-CCACTGGGTGTTCACGCGTCTGAGTATTTATT
GTTATGTAAAATATCTGCTCGCATGGCTTTTGGATGGTGTTGTCTTGCTTTTGTCAAGAACTCGAAATGTAGTCCATGAG
TATTGAGTTTGGAACATTTTGGGTTTGAATTGTGGGTATTTGAGTTGCATGTGCTGGTTATGGATTGCATACAACTTCT-
ATAAATCACTTGCTATATTATTTTTACGCATTTGATATGCCAGTTCCTTATTGTTTTGTT---CTTACATGTGAGAAGCC
GCTCCTGATCGTCGGTGGGCAGCTAGCATGCGCCTGTTACAAAGTTTGAAGTCAGTAGATTTGGATACATTAGAGCTGAG
ACTGTACAAAAGAAAACTTAGTTGCATAATCTTGACGGAGCATGTTTGGTGCCAGTTTATATTGTTTTTACTTTT-TTTT
AGGGAGTTCATATTGTTTTACTACTATGGCAAGTATCAGATCATCT----------------------------------
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------------------------
>SNPs
-----------S----------------S------------S-----------S--------------------------
----------------------S---------------------------------S-----------------------
----SS-----------------------------------SSS----------------S-------------------
---------------------SSSSS---------------------------S--------------------------
--------S-----------------S-----S-S----------------------------S---------S------
--S---------------------S------S------------S-------S----S----S-----------------
------S-S------------S--S--S-----------S--SS--S---S-------SS-S---S---------S----
-S------------S----------S--------------S------------------S--------------------
--------------------------S-----------------------------------------------------
--S-SS------------S---S------------------------------------S----------S---------
---------------------------------------S----------S-----------S--------------S--
--------------------------------------------------S----------------------S------
-----------S------------------------------------------S-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------S---------S----------S-------------------------------
--------------------S-------------------------------------S---------------------
--------------------------------------------------------------------------S-----
-------------------------S--------------------------------------S---------------
--------------------S---S----------------------S--------------------------------
--------------------------------------------------------------------------------
---------------------------------------S-------S------------------S--S----------
--------------------------------------------------------------------------------
-------------------S----------------S-------------------S-------S-----S-S-------
---S----------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------S---------------------------------------------
----------S---------------------------------------------------------------------
-----S----SS-----------------------------------SS-------------------------------
----------------------------S------S-------------------------SSS----------------
---------------------S------------------------------------------------------S---
-------------S-----------------------------------------------------------S------
-----------------S--------------------------------------------------------------
----------------------S------------------------S----S----------S----------------
-------------------------------------------------------------------------S-----S
---------------------------------------------------S------------S---------------
--------------------------------------------------------------------------------
--------------------------------S--------S-----------------------------------S--
------------------------S--------------------------------------------------S----
------------S------------------------------------------------S------------------
-------------------------S------------------------------------------------------
---------SS--------------------------------S------------------------------------
--S---------------------------------------------------S-------------------------
---------------------------------------------S--------------------------S--S--S-
----------------------------------------------------------------S---------------
--------------------S-----------------------------------------------------------
-----------S--------------------------------------------------------------------
------S----------------------------------------S--------------------------------
-------------------------S------------------------------------S-----------------
-------------------------------------------------------------------------S-----S
------S------------------S-----------------------S----------S------------------S
-S-----SSSS-SSSSS-SS-----------------------------------------------------------S
---------------------------------S----------------------------------------------
----------------------------------------S---------SS-S----S-S----------SSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS
>forward_791
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------CTAATCGGTAGTGGCGTTGC---------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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>reverse_2115
--------------------------------------------------------------------------------
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----------------------------------GAGTGAAGGTGACACGACCA--------------------------
--------------------------------------------------------------------------------
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------------------------
>forward_954
--------------------------------------------------------------------------------
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-------------------------------------------------------TCTCGACCGACCTCCCAAT------
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>reverse_2578
--------------------------------------------------------------------------------
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-----------------CCCCCACTAGTAGCCATGAT-------------------------------------------
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------------------------
>forward_1015
--------------------------------------------------------------------------------
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------------------------------------CGCGTCGACTCGGAAGTAA-------------------------
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>reverse_2865
--------------------------------------------------------------------------------
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----------------------------------------------------------------GTCTCTCCTGCAAATC
TCCCT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------
>forward_1228
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-------TCTCTCCTCGACATGTAAGCC----------------------------------------------------
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>reverse_3065
--------------------------------------------------------------------------------
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------------------------TCACCCACTAGCAGGACAAC------------------------------------
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>forward_2993
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------------GGCCTGTTTGAGCTATACCCC-----------------------------------------------
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>reverse_4628
--------------------------------------------------------------------------------
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-------------------------------------------------------------------CCGGACATACACA
TTGGGCT-----------------
