>input_sequence_30804
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----------------------------------ATGGGCTGCGCCGGATCCACCCCTAAATCTGACGGTCTCTCCTTTC
ACTCCGTCTATCTCGATTCTGTTAATGCTTTCTTAGGTGGGTTCATGATTGAGATCTTGGGCAATCTGGTC-------CC
ACTATCGGAGTAGTGTCCTAGGTTCTTGATCAAGGCGCCTGTAACTATTATGTCGATTTAGCCCTGCCTGCCGTTGGTTG
CTTAGCAGATTGGATTGATGATGCGTCGCTGCGGTAATTCAGCTGGAGGTAGCAGGGAGGGGGGATTAGTGCTGCTTATG
GAATGCTGTATCATGTCCCATGTTATATTTGGTCATATGTGATCGTTCTGCTCATGTTGGCAATTTGCAAAGTTCTAAAG
GCCAAACTGAACAATTATTG------------------------------------------------------------
--GAAGAGAGGATATGTGTGTTATGAAAAAGCAATTGATAGGTGACCTATTCTCCATTTGTACTGTGAAGTACTCCCTCC
GTCCCAAAATTCTTGTCTTAGATTTGTCTAGATACGGATGTATCTATTCATGTTTTAGTGTAAGATACATCCGTATCTAG
ATAAATCTAAGACAAGAATTTTGGGACGGAGGGAGTAACAGGTTTAACATCCAATTAGTGAGTATGA-------------
--------------------------------------------CAGATATAATTATCGAGGAAGGTGATGGGACCGTCG
ATTTATTCCTCCGTAGAACAGAGTACCTAGCAACATTATTGAAGATGTGACACGACGAAAGACCTACCGAAATGACGTG-
-TTTTTTACTGTAGGAGGAAAGACATTACTTTTGGGGGTTCAGTAGTAGAAAATATGTCTGTTTTGGTAAAAAAAAATGT
CCTTAAAATCAGTGTTTGTCCGTGAGCATGTTTAAATGATAGTGAGATGACAATAGCAAAAGGAAACACTCTTCCTTATG
TAGTTTCTTTTAACGTCCTCGTCGGATACTGAGCTTGCCCAACTACTTTTCTCTAATA----------------------
--------------------------------------------------------------------------------
----------------------------------------------------------GTTATTAAATGAACTGACATTG
TGCACAACCTTCGTATTAGTTACACGAATTTCAACTGGTCAGCAAGGTGTAAACTTGAAATGTGTCAAGGCGGTGAAGAT
GAAATTTGTATTTCACGGTTCAGCAAATGAAGGGCGTTTACTAACTGATATAAAACAGGCCTCTGAAAAACAAACCCACT
GATGAAACAGGCTTTTAGACAAGTAGCTTTGTTAAAAATCTTTGTTATTAGTTATTGGAAGCCAAATTGTGTACTTCCGT
TATTTTGTATACTTATGCAGTGTCTAAAACAACATGAGCCTGATTCAGTTTAAGATAAACACAGTGCTTACTTGCTGTGA
CTG------------------------------------TTTTGTTGATCTCAGATAGCAGTAAGAAGCTGAAAAAAACA
AAGCCTTGGAAGCACACTCAGTCAATTACACCAGCACAACTCAAACAGATGCGCGAAGAATTCTGGGACACTACTCCTCA
CTATGGTGGACAGAAAGGTACTGTAGTACTGTACAACTTTGTAGTACTGTGAACATTTATCTGCAAGCGATTTATACTGC
TTGCTGGACCAGTTCCTTTTTCATGCTCTGAACTTTGACCTAACTTTACTAAATCTGTATGCAGTTCTTTTTAAATGGTC
TGAATGCAGATTTGTACACTGAAATCTGTACTAGATCAGTATGCAGTTTGTTACATTAAACTTTTGAAGTACATGTACAC
TTATAGTGTTGATTTGCTGTTTTGCTAGTTTAGTCCACTGTTGATGTTAAATTTAACATGTTAACTTATAGTCCTTGAGG
AGGAAACAAATATGAACGGATAGCCAAACAGAAGTTGGCATGTGTTGTACTCCCTCCATTCACAAATATAAGATGTTTTG
GATATTTCAATATGAACTAGATATGGGCTGAAATGAGCGAAGAAACACACTAAAACGTGTCTATATACATCCGATTCAAA
ATATAAGTTACTCCCTTTGATCCATATTAATTGTCGCTGATTTAGTACGACTTTGTACTAAATTAGGGACGACTAATATG
GATCGGGGGGAGTAGAACATCTTACATTTGTGAACGGAGGGAGTAGATTTTATTGATGCAAATCTCCTTGTACTATGGAC
ATTGCCGCAGGTTCTTTGTTGGGATGGACCGTGCAAATTCTTTAAATATCTACTTAACATTTAGCATATTTTATGTTTGT
TTGGTCGAGCGAAGGGTTGGTCTGAGCCATATGTTGAACTGTTGTTTTATCATATGCATGGAATTCATGTTTATTGTTTT
TTTGATATTGCGCTCTTAATTTGCTTACAACTAAACAGTTGAAGAAGCACTAGATATTCTAATTTGAACTAAAAACTACC
ATCCGTTTCCATTCAGAGATCTGGGATGCACTTCGGGCCGCTGCAGAAGCTGATTTATCTCTTGCGCAAACCATAGTAGA
CAGTGCTGGCATCATTGTCTCAAATTCTGACATGACACTCTGCTACGACGAAAGAGGTAAAAAAAAA-----TCCTTGTA
TCGCATGCATCTTCTCCACCGTCCTGTGCTTTCAGAACCAAAATCAATGGCTGGGAAACTCTGCTGCAGGTGCCAAATAC
GAACTACCAAAGTACGTTCTGAGCGAGCCGACTAATTTCATCCGGGAGGAATGA--------------------------
--------------------------------------------------------------------------------
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-------------------------
>chr3B_1_TraesCS3B01G315300
TGAGGGTTGATGGGTGGGTGAGTGGCCCACCCAAGGCCCCCATCCACTTACTCTTTATGGGGTCTATCGTCATCGGCCTT
GGCGGTAGGGTTAGAAGGCTACCGCCGGGATTAGTGGCGGTAGCCCCTTTGCCCGGTAGGCACGACTGAGGGGCATGAAC
CGGGGTTTACCACAGTTGTCCCCGGTGGTATCCCATGTAGCCCATCGCCGATGTATATGACGGTAGCAAAAAGATCATAT
TCGGCTAAACATACAAAGTGGTGTCCAATTGCCCTAAACTTTTGCTAAAAGGTTAAGATAATGATTTTGGCCAAGGTGTG
CACTCAAGTAGACCCCGATAAACTGCTTCTTCTCTAAATGCCTCTATAAAAAAGGGGGGGGGCTGGTCTTGCCCTCAAGT
GGGTTTTCTGAAACTTAATGTTGATGCTTCTTTTGACCTAAA--------------------------------------
---------------------------------------------------------------CTGAAGCCTTGTCTCTC
AAATTCGGACTATCGCTGACGAAAAGGTCGGGATGCAATCATCTTATTATTAACTCGGAGAATCTGGATGTGATTGATAC
CATGAAGGATGGAGGATGGTCGGCGGGTGCAGCGGCGGTTATTTTTGACGATTGTTTTCATTATGCTTGTGATTTTATTA
TTACTAGATTCGAACGCTATAACAAAAAAGCAAACAAAGTTGTC-CACGAGCTCGCTAGATTAGCTTGATATTCTTTGAC
TTCTGATTTGCATGAGGAGCCCTTAAATGAAATTGTAACAAT--------------------------------------
-------------ACAAAAGTAGACCCCGGTAAAGAACAGCACCGCATGGGTACCAGCTATACTCGCACCTGTTTTTGTT
GGCTAGCATAGGGCATAGCCACAACCTGACAGGCTGACACGTCCATCCTCCACTCCTGCTCCGCCTTCGTCTTTTCAGTC
CACCTCCCTCTCCTGCATCGACCCTGCAGTCCAGAGCCCGGAAGCGTGAGCCACCTCCGCTTCCAGGAGCTTCTCGAAGG
G-GGCCGCCGATGACCCTCTGATCGTCCGTCGCCATGGGCTGCGCCGGATCCACCCCTAAATCTGACGGTCTCTCCTTTC
ACTCCGTCTATCTCGATTCTGTTAATGCTTTCTTAGGTGGGTTCATGATTGAGATCTTGGGCAATCTGGTC-------CC
ACTATCGGAGTAGTGTCCTAGGTTCTTGATCAAGGCGCCTGTAACTATTATGTCGATTTAGCCCTGCCTGCCGTTGGTTG
CTTAGCAGATTGGATTGATGATGCGTCGCTGCGGTAATTCAGCTGGAGGTAGCAGGGAGGGGGGATTAGTGCTGCTTATG
GAATGCTGTATCATGTCCCATGTTATATTTGGTCATATGTGATCGTTCTGCTCATGTTGGCAATTTGCAAAGTTCTAAAG
GCCAAACTGAACAATTATTG------------------------------------------------------------
--GAAGAGAGGATATGTGTGTTATGAAAAAGCAATTGATAGGTGACCTATTCTCCATTTGTACTGTGAAGTACTCCCTCC
GTCCCAAAATTCTTGTCTTAGATTTGTCTAGATACGGATGTATCTATTCATGTTTTAGTGTAAGATACATCCGTATCTAG
ATAAATCTAAGACAAGAATTTTGGGACGGAGGGAGTAACAGGTTTAACATCCAATTAGTGAGTATGA-------------
--------------------------------------------CAGATATAATTATCGAGGAAGGTGATGGGACCGTCG
ATTTATTCCTCCGTAGAACAGAGTACCTAGCAACATTATTGAAGATGTGACACGACGAAAGACCTACCGAAATGACGTG-
-TTTTTTACTGTAGGAGGAAAGACATTACTTTTGGGGGTTCAGTAGTAGAAAATATGTCTGTTTTGGTAAAAAAAAATGT
CCTTAAAATCAGTGTTTGTCCGTGAGCATGTTTAAATGATAGTGAGATGACAATAGCAAAAGGAAACACTCTTCCTTATG
TAGTTTCTTTTAACGTCCTCGTCGGATACTGAGCTTGCCCAACTACTTTTCTCTAATA----------------------
--------------------------------------------------------------------------------
----------------------------------------------------------GTTATTAAATGAACTGACATTG
TGCACAACCTTCGTATTAGTTACACGAATTTCAACTGGTCAGCAAGGTGTAAACTTGAAATGTGTCAAGGCGGTGAAGAT
GAAATTTGTATTTCACGGTTCAGCAAATGAAGGGCGTTTACTAACTGATATAAAACAGGCCTCTGAAAAACAAACCCACT
GATGAAACAGGCTTTTAGACAAGTAGCTTTGTTAAAAATCTTTGTTATTAGTTATTGGAAGCCAAATTGTGTACTTCCGT
TATTTTGTATACTTATGCAGTGTCTAAAACAACATGAGCCTGATTCAGTTTAAGATAAACACAGTGCTTACTTGCTGTGA
CTG------------------------------------TTTTGTTGATCTCAGATAGCAGTAAGAAGCTGAAAAAAACA
AAGCCTTGGAAGCACACTCAGTCAATTACACCAGCACAACTCAAACAGATGCGCGAAGAATTCTGGGACACTACTCCTCA
CTATGGTGGACAGAAAGGTACTGTAGTACTGTACAACTTTGTAGTACTGTGAACATTTATCTGCAAGCGATTTATACTGC
TTGCTGGACCAGTTCCTTTTTCATGCTCTGAACTTTGACCTAACTTTACTAAATCTGTATGCAGTTCTTTTTAAATGGTC
TGAATGCAGATTTGTACACTGAAATCTGTACTAGATCAGTATGCAGTTTGTTACATTAAACTTTTGAAGTACATGTACAC
TTATAGTGTTGATTTGCTGTTTTGCTAGTTTAGTCCACTGTTGATGTTAAATTTAACATGTTAACTTATAGTCCTTGAGG
AGGAAACAAATATGAACGGATAGCCAAACAGAAGTTGGCATGTGTTGTACTCCCTCCATTCACAAATATAAGATGTTTTG
GATATTTCAATATGAACTAGATATGGGCTGAAATGAGCGAAGAAACACACTAAAACGTGTCTATATACATCCGATTCAAA
ATATAAGTTACTCCCTTTGATCCATATTAATTGTCGCTGATTTAGTACGACTTTGTACTAAATTAGGGACGACTAATATG
GATCGGGGGGAGTAGAACATCTTACATTTGTGAACGGAGGGAGTAGATTTTATTGATGCAAATCTCCTTGTACTATGGAC
ATTGCCGCAGGTTCTTTGTTGGGATGGACCGTGCAAATTCTTTAAATATCTACTTAACATTTAGCATATTTTATGTTTGT
TTGGTCGAGCGAAGGGTTGGTCTGAGCCATATGTTGAACTGTTGTTTTATCATATGCATGGAATTCATGTTTATTGTTTT
TTTGATATTGCGCTCTTAATTTGCTTACAACTAAACAGTTGAAGAAGCACTAGATATTCTAATTTGAACTAAAAACTACC
ATCCGTTTCCATTCAGAGATCTGGGATGCACTTCGGGCCGCTGCAGAAGCTGATTTATCTCTTGCGCAAACCATAGTAGA
CAGTGCTGGCATCATTGTCTCAAATTCTGACATGACACTCTGCTACGACGAAAGAGGTAAAAAAAAA-----TCCTTGTA
TCGCATGCATCTTCTCCACCGTCCTGTGCTTTCAGAACCAAAATCAATGGCTGGGAAACTCTGCTGCAGGTGCCAAATAC
GAACTACCAAAGTACGTTCTGAGCGAGCCGACTAATTTCATCCGGGAGGAATGAATTCATAGACCACGAAGGATTCGTGT
AAATCATGTAAATCTCATTTGTCCGGCGACTTTAGTCTTTACTTGCTCAAAACTTCAATGGAG-ATGCCACATTCAGTTT
ACAGTTCTGGTCTGAGTTGTTATGGACTTGTAGTGTTCGTATCTCTTTCTAGGCCGACACCCGAGTATGGTACACTGAGC
TGTCGAAACCCAGAAATAGGAAAAATATAGAATTGCAATGTTATATTTTTTTC---AGACAAATTGCAATGTTATATGTA
CATTTATTTAGGCAAATTTTATGTGTAC----TTTTTTTTAGAAGTGTTATATGTATACTATTTTTTTGAGTGA------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------TAT
GTTATATGTATACTTGAGAGGAAGGAATACCTACGGGGTAGGCCCAAGTATATGGCCCAGCCAAAGGCCCAGGCCCGTCA
AGATTACAGCCCAAGACGCCCTCGAGCAACCGTTCGCCCAAGTGTCTTCTTAAGTCGGATTGCACCCCTCCAATCGAGCA
AGGACCGTCCAGGCTGGGAGCAGATAAATTTCTTACCGTCGGCTGCGCCAAGAGACATGTATACTATTTTTTGAGCTTCA
CTGGATCTTTGGCCCACATGTCAATGACCCAACTGCGTCTGCAGTTACGTCATTGAAGCAGCGTCCGTCAGAAGGAGCGC
GCCGGGCTTAGGGTTGAACCTGTATAATTTCTTGTGAGTGTTACCTCCCCAAAGAGGACCCAAACCTATGTACAAGAGCA
AAAACACCATCATAGGAGTAGGGTATTACCTCCTTGGCGAAGGCCGATAACATGAATTTGTGATAATCATGGTGGATTGA
GCTGCTTCTACCTAATTGGGTACTCTTGCTTATAGAGCATAACTGGTTTGATGCTAAAAGTTGGCATGTCAATTTTTGGC
AATTACCAAATGTTGGCTAGAGATTGATCGCTTGCCAATTTTCGTTGCCAGTGTCACAAAAGATTGCCAAATGTTGGTAA
CTTTTGATTTTGCCAAGCGTTGGCA
>chr3A_1
TGTGGATTGA-GGGTAGGTGGGTGGCCCACCCAAGGCCCCTAGCCACTTACTCTTTATGGGGTCTATCATCATCGGCCCT
GGCGGTAGGGTTAGAAGGCTACCACCGAGATTAGTGGCGGTAGCCCTTTGGCTGA-TAGGCATGACTGAGGGGCGTGAAC
CGCGGTTTACCACCATTGTCCCCGGCGATATCCCATGTAGCCTATCGCTGATGTATATGACGGTAGCAAAAAGATCATAT
TCGGCTAAACATACAAAATGGGGTCCAATTGCCCTCCTCTTTCGTTAAAAGGTTGAGATAATGATTTTGGCCAAGGTGTG
CACTCAAGTAGACCCCGATAAACCGCTTCTTCTCCAAATGCCTCTATG--AAAGGGGGGGGGCTGGTCTTGCCCTCCAGT
GGTTTTTCTGAAACTTAACACTGATACTTCTTTTGACCATGACCTGCTCAGGGGCATGATGGGGGTTGTCCTTAGAGATG
ACAGAGGCAAATTTATTGTTGGGGGAAATGGGAAGATAGACTACTGCGCGGGTGTCTTGACCGCTGAAGCTTTGTCTTTC
AAATTCAGAC----------------------------------TATTATTAACTCGAACAATCTGAACATGATTGATAC
CATGAAGGATGGAGGACGGTCGGCGGGTGCAGCGAAAGCTATTTTTTATGATTGTTTT-ATTATGCTTGTGATTTTATTA
TTACTAGGTACGAGTAC--TAACAGAGAAGCAAATAAAGTTTGATCACGAGCTCGCTAGATTAGTTAGATTTTCTTAGAC
TTTTGAATTGTTTGAGGAGCCCTTAAATGAAATTGTGACAACCCTCATAAATG---------------------------
---------AAAAACAAAAGTAGACCCCGGTAAAGAACAGCACCGCATGGGTACCAGCTATACTCGCACCTGCTTTTGTT
GGCTAGCATAGCCACAT-------CCTGACAGGCTGACACGTCCATCCTCCACTCCTGCTCCGCTTTCGG-TTTTCAGTC
CACCTCCCTCTCTTGTATCGACCCTGCAGTCCAGAGCCCAGACGCGTGAGCCACCTCCGCTTCCAGTAGCTTCTCGAAGA
GAGGTCGCCGATGACCGTCTGATCGTCCGTCGCCATGGGCTGCGCCGGATCCACCCCTAAATCTGACGGTCTCTCCTTTT
ACCCTGTCTATCTCGATTCTGTTAATGCTTTCTTAGGTGGGTTCATGATTGAGATCTTGGGCAATCTGGTCCCCAGAACC
ACTATCAGAGTAGTGTCCTAGGTTCTTGATCCAGGCGCCTGTAACTGTTATGTCGATTTAGCCCTGCCTGCTGTTGGTTG
CGTAGCAGATTGGATTGATGATGCGTCGCTCCGGTAATTCAGCTGGGGGTAGCAGGGA-GGGGAATTAGTGCTGCTTATG
GAATGCTCTATTATTTCCCATGTTATATTTGGTCATATGTGATCGTTCTGCTCCTGTTGGCAGTTAGCAAAGTTCTAAAG
GCCAAATTGAACAATCATTGGAACAAAGGAGCTGTTAATATCACCATGATCAACGTATCAGTGGTACAGTACAATTTTAG
GTGAAGAGAAGATATGTTTGTTATGAAAAAGCAATT--------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------GTGAGTATGA-------------
--------------------------------------------CAGAAATAATTATCGAGGACGGTGATGGGATTGTTG
ATTTATTCCTCCATAGAACAGAGTACCTAGCAACATTATTGAAGATGTGACACGACGAAAGACCTGTGGAAATGACGCTT
-TTTTTTAGTGTAGGAAGGAAGACATTACTTTTTCGGGTTCAGTAGTAGGAAATATGTCTGTTTTGGTAAGAAAAATGG-
CCTTAAAATCAGTGTTAGTCCATGAGCATGTTTAAATGGGAGTGAGATGACAATAGCAAAAGGAAACACTCTTCCTTGTG
CAGTTTCTTTTAACTTCCTCGTCGAATACTGAGCTTGCCCAACTACTTTTCTTTAATACTCCCTCCGTTCCTTAATATAA
GTCTTTTTAGAGATTTCAATACGAACTACATATGGATGTATATAGATATATTTTATAATGTAGATTCACTCATTTTGCTT
CGTATGTAGTCCGCATTTGAATCTCTAAAAAGACTTATATTTAGGAACGGAGGGAGTAGTTATTAAATGAACTGACATTG
TGACAACCTTTCGTATTAGTTACACTAATTTCAACTGGTCAGCAAGGTGTAAACTTGATGT-------GGTGGTGAAGAT
GAAATTTGTATTTCACGGTTCAGCAAATGAAGGGCGTTAACTAACTGATATAAAACAGGCCTCTGAAAAACAAATCCACT
GATGAAACGGGCTTGTAGACAAGTAGCTTTGTTAAAAATCTTTGTTATTAGTTATTGGAAGCCGAATTGTGTACTTCCGT
TATTTTGTATACTTATGTGGTGTCTAAAACAACATGAGCCTGATTCAGTTCAAGATAAACACAGTGCTTACTTGCTGTGA
CTGCATTTGGATATATTCAG-TACTAACGCTTAACTTGTTTTTGTTGATCTCAGATAGCAGTAAGAAGCTGAAAAAACCA
AAGCCTTGGAAGCACACTCAGTCAATAACACCAGCACAACTCAAACAGATGCGCGAAGAATTCTGGGACACTACTCCTCA
CTATGGTGGACAGAAAGGTACTGTACAACTCTAATT-TTTGTAGTACTGTGAACATTTATCTGCAAGCGATTTATACTGC
TTGCCGGACCAGTTCCTTTT--------TGAACTTTGACCTAACTTTACTAAATCTGTATGCAGTTTTTTTTAAATGGTC
TGTATGCAGATTTGT-CACTGAAATCTGTACTAGA----TATGCAGTTTGTTACATTAAACTTTTGAAGTACATGTATAC
TTATAGTGTTGATTTGCTGTTTTGCTAGTTTAGTCCATTGTTGATGTTAAATTGGGCACGTTAAATTATAGTCCTTGAGG
AGGAAACAAATATGAAGGGATTGCCAAACAGAAGTTGGCATGTGTTGTACTCCCTCCGTTTAC--ATATAAGATGTTTTT
-ATATTTCAATATGAACTACATACGGACTGAAATGAGCGAAGAAACGCACTAAAACGTGTCTATATACATCCGATTCAAA
A-ATAAGTTGCTCCCTTCGATCCATATTAATTGTCACTGATTTAGTACAACTTTGTACTAAATTAGGGACAATTAATATG
GATCGGAGGGAGTAGAACATCTTATATTTGTGAACGGGGGGAGTAGATTTTATTGATACAAATTTCCTTGTACTATGGAC
ATTGCCGCAGGTTCTTTGTTGGGATGGACTATGCAAATTCTTTAAATATCTACTTAACATTTAGCATATTTTATGTTTGT
TTGGTCGAGCGAAGGGTTGGTCTGAGCCATATCTTGAACTGTTGTTTTATCATATGCATGGAATTCATGTTTGTTG-TTT
TTTGATAATGCGCTCTTAATTTGCTTACAACCAAACAGTTGAAGAAGCAGT-GATATTCTAATTTGAACTAAAAACCACA
ATCCGTTTCCATTCAGAGATCTGGGATGCACTTCGGGCCGCTGCAGAAGCTGATTTAGCACTTGCGCAAACCATAGTAGA
CAGTGCTGGCATCATTGTCTCAAATTCTGACATGACACTCTGCTACGACGAAAGAGGTAAAATTATTATTTTTCCTTGTA
TCGCATGCATCTTCTCCACCGCCCTGTGCTTTCAGAACCAAAATCAGTGGCTGGGAAACTCTGCTGCAGGTGCCAAATAC
GAACTACCAAAGTACGTTCTGAGCGAGCCGACTAATTTGATCCGGGAGAAATGAATTCATAGACCACGAAGGATTCGTGT
AAATCATGTAAATCTCATTTGTTCGGCAACTTTAGTCTTTACTTGCTCAAAACTTCAATGGAG-ATGCCACATTCGGTTT
ACAGTTCTGGTCTGAGTTGTTATGGACTTGTAGTGCTCGCATCTCTTTCTAGGCCGACACCTGAGTATGGTACACTGAGC
TGTCGAAACCCAGAAATAGGAAAAATATAGAATGGCAATGTTATATGTTTTTTTCAAGACAAATTGCAATGTTATATGTA
CATTTTTTTAGGCAA-----------------------------GTGTTGTATGTATACTTTTTTTTGA-----------
------------GTGCTATGTTTCTTTTTTTGAGCTTTGAGTGCTAT---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-TTATATGTATACTTGAGATGAA---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
>chr3D_443
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------CTGAAGCCTTACATCTC
AAATTTGGACTATCGCTGACGCAAAGGTCGGGATGCAATCGTCTTATTATTAACTCGGACAATCTGAACATGATTGATAC
CATGAAGGATGGAGGATGGTGGGCGGGTGCAGCGGCGGCTATTTTTGATGATTGTTTTCATTATGCTTGTGATTTTATTA
TTACTGGGTTCCAACACTATAACAGAGAAGCAAATAAACTTGC-TCATGAGCTCGCTAGATTAGTTAGATTTTCTTTGAC
TTCTGATTTGTTTGAGGAGTCCTTAAATGAAATTGTAACAACCCTCATAAGTGATGTATTGGTTATTTATAAATTTCGTG
TTTATATTTAAAAACAAAAGTAGACCCCGGTAAAGAACAGCACCGCATGGGTACCAGTTATGCTCGCACCAGTTTTTGTT
GCCTAGGATAGCCACAT-------CCTGACAGGCTGACACGTCCATCCTCCACTCCTGCTCTGCTTTTGG-TTTTCAGTC
CACCCCCCTCTCCTGCATCGACCCTGCAGTCCAGAGCCCGGACGCGTGAGCCACCTCCGCTCCTAGTAGCTTCTCGAAGG
AAGGCCGCCGATGTCCCTCTGATAGTCCGTCGCCATGGGCTGCGCCGGATCCACCCCTAAATCTGACGGTCTCTCCTTTT
ACTCTGTCTATCTCGATTCTGTTAATGCGTTCTTAGGTGGGTTCATGATTGAGATCTTGGGCAATCTGGTCCCCAGAACC
ACTATCGGAGTAGTGTCCTAGGTTCTTGATCAAGGCGCCTGTAACTATTATGTCGATTTAGTCCTGCCTGCTGTTGGTTG
CTTAGCAGATTGGATTGATGATGCGTCGCTGCGATAATTCAGCTGGAGGTAGCAGGGA-GGGGGATTAGTGCTGCTTATG
GAATGCTGTATGACGTCCCATGTTATATTTGGTCATATGTGATCGTTCTGCTCCTGTTGGCAGTTAGCAAAGTTCTAAAG
GCCAAACTGAACAATCATTAGAACAAAGGAGCTGTTAATA---CCATGATCAACGTATCTGTGGTACAGTACAATTTTAG
GTGAAGAGAGGATATGTGTGTTATGAAAAAGCAATT--------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------GATAGGTGACCTATTCTCCATTT
GTACTGTAAGGTAAAAGGTTTAACATCTATTTAGTGAGTATGACCAGATATAATTATCGACGAAGGTGATGGGACTGTTG
ATTTATTCCTCCGTAGAACAGAGTACCTAGCAACATTATTGAAGATGTGATGTGACGAAAGACCTATCGAAATGATGGGG
TTTTTTTACAGAAGGAGGAAGGACATTACTTTTTGGGGTTCAGTA--AGGAAATATGTCTCTTTTGGTAAGAAAAATGG-
CCTTAAAATCAGTATTGGTCCATCAGCATGTTTAAATGGGAGTGAGATGACAATAGCAAAAGGAAACAGTCTTCCTTGTA
CAGTTTCTTTTAACTTCCTCGTTGAATACTGAGCTTGCCCAACTACTTTTCTCTAATA----------------------
--------------------------------------------------------------------------------
----------------------------------------------------------GTTATTAAATG-----------
----------------------CACTAATTTCAACTGGTGAGAAAGGTGT---------------CAAGGTGGTGAAGAT
GAAATTTGTATTTCACGGTTCAGCAAATGAAGGGCGTTAACTAACTGATATAAAACAGGCCTCTGAAAAACAAACCCACT
GATGAAACGGGTTTGTAGACAAGTAGCT-------------TTGTTACTAGTTATTGGAAGCCGAATTTTGTACTTCCGT
TATTTTGTATACTCATGTGGTGCCTAAAACAAGATG-GCCTGATTCAGTTTAAGATAAACACAGTGCTTACTTGCTGTGA
CTGCATTTGGATATATTCAGTTACTAACGCTTAACTTGTG-TTGTTGATCTCAGATAGCAGTAAGAAGCTGAAAAAACCA
AAGCCTTGGAAGCACACTCAGTCAATAACACCGGCACAGCTCAAACAGATGCGCGAAGAATTCTGGGACACTACTCCTCA
CTATGGTGGACAGAAAGGTACTGTACAACTCTAATT-TTTGTAGTACTGTGAACATTTATCTGCAAGTGATTTATACTGC
TTGCTGGACCAGTTCCTTTTTCATGCTCTGAACTTTGACCTAACTTTACTAAATCTATATGCAGTTTTT-TTTAATGGTC
TGTATGCAGACTCGTACATTGAAATCTGTACTAGATCAGTATGCAGTTTGTTAGATTAAACTTTTGATGTACATGTACAC
TTATAGTGTTGAT-TGCTGTTTTGCTAGTTTAGTCCACTGTTGATGTTAAATTTGACATGTTAACTTATAGTCCTTGAGG
AGGAAACAAATATGAAGGGATTGCCAAACAGAAGTTGGCATGTGTTGTACTCCCTCCGTTCACAAATATAAGATGTTTTG
GATATTTCAATATGAACTACATACGGACTGAAATGAGTGAAAAAACACACTAAAACGTGTCTATATACATCCGATTCAAA
A-ATAAGTTACTCCCTTCGATCCATATTAATTGTCGCTGATTTAGTACAACTTTGTACTAAATTAGAGACAATTAATATG
GATCGGAGGGAGTAGAACATCTTACATTTGTGAACGGAGGGAGTAGATTTTATTGATACAAATCTCCTTGTACTATGGAC
ATTGCTGCAGGTTCTTTGTTGGGATGGACCGTGCAAATTCTTTAAATATCTACTTAACATTTAGCATATTTTATGTTTGT
TTGGTCGAGCGAAGGGTTGGTCTGAGCCATATCTTGAACTGTTGTTTTATCATATGCATGGAATTCATGTTTGTTG-TTT
TTTGATAATGCGCTCTTAATTTGCTTACAACCAAACAGTTGAAGAAGCACTAGATATTCTAATTTGAACTAAAAACTACC
ATCCGTTTCCATTCAGAGATCTGGGATGCACTTCGGGCCGCTGCAGAAGCTGATTTATCTCTTGCGCAACCCATAGTAGA
CAGTGCTGGCATAATTGTCTCAAATTCTGACATGACACTCTGCTACGATGAAAGAGGTAAAATTATTATTTTTCCTTGTA
TCGCATGCATCTTCTCCACCGCCCTATGCTTTCAGGACCAAAATCAATGGCTGGGAAACTCTGCTGCAGGTGCCAAATAC
GAACTACCAAAGTACGTTCTGAGCGAGCCGACTAATTTGATCTGGGAGGAATGAATTCATAGACCACGAAGGATTCGTGT
AAATCATGTAAATCTCATTTGTTCCGCGACTTTAGTCTTTACTTGCTCAAAACTTCAATGCAGAATGCCACATTCGGTTT
ACAGTTCTGATCTGAGTTGTTATGGACTTGTAGTGCTCGCGTCTCTTTCTAGGCCGACACCTGAGTATGGTACACTGAGC
TGTCGAAACCCAAAAATAGGAAAAATATAGAATTGCAATGTTATATGTTTTTTTC-AGAAAAGTTGCAATGTTCTATGTA
CATTTTTTTAGGCAAATGTTATATGTATACTTTTTTTTTGAGAAGTGTTATATGTATACTTTTTTTAGAAGTGTTATATG
TACTTTTTTTTAGTGCTATGTTATATGTATAATTTTTTTTCGAGAAAACATCTGTAATTTTATTCATACTCATAACAATT
ATAGGTACACTGATTCGGATTTAAGATCCAAGCAAATACAAAGTGACTCCTATGACTAAGAATTACAATGAAATTTCTTG
AAAACATCTTCTTTGATGCATCAATCTCTGTTAGAAGAAACTCTCCAAAGACTTCGGTTAAAAGGCTGCAATTGGGCTAT
GTTATATGTATACTTGAGATGAAGGAATACCTACGGGGTAGGCCCAAGTATATGGCCGAGCCAAAGGCCCAGGCCCGTCA
AGATTACAGCCCAAGAGGCCCTCAAGCAACCGTTCGC-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
>SNPs
--S--S----S----S----S-------------------S-S-------------------------S---------S-
-----------------------S---S------------------S--S--SSSS------S-----------S-----
--S----------SS----------S-S--------------S-----S-------------------------------
-----------------S---S-------------SSS----S-S---------S-------------------------
-----------------------S----------S------------SSS--------------------------S---
--S---------------SSS----S------------SSS---------------------------------------
--------------------------------------------------------------------------------
---------------------S------------------S------------------S------S-SS----------
--------------------------------------S---------S-------------------------------
-------S-------S--------S-S-------S-------SS--------------------S-S---S---------
----------SS-----------------------------S--------------------------------------
--------------------------------------------------------------------------------
-----------SSSSSSSSSSSSS----------------------------------------S----SS---------
------------------------------------------S-----------------------S-------------
-------------------------------------------------------------------------------S
----S---------------------------------------------------------------------------
-----------------------------------------------------------------------S--------
----------------------------------------------------------S---------------------
-----------S-----------------------------------------S--------S--S--------------
---------------S----------------------------------------------------------------
------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------
---------------------------------------------------------------------------S--S-
------------------------------------------------------------------S----------S--
---------------------------------S---------------S--------------------S-----SS-S
----------------S----S----------------SS-------------------------------------S--
S-------------S---------S-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--SSS-S-S----------------S--------------------------------SS-SSSS-----S---------
--------------------------------------S-----------------------------------------
--------S-----S------------------------------------------------S----------------
-----------------SS-------------------------------------------------------------
-----------------------------------------------------------------------------S--
--------------------------S-----------------------------------------------------
-------------------------SS---S--SSSS-------------------------------------------
------------------------------------------------------------------S-------------
--S-----------------------------------------------------------------------------
------------------------------------------------------S-------------------------
----------------S----S-----------------------------------S----------------------
-------------------S---S--S-----------------------------------------------------
-S---------------S------------------------------S---------------------S-S-------
------S--------------------------------------------------S----------------------
--------------------------------------------------------------------------------
--------------------------------S---------------------------------------S---S---
-------S-----------------------S------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------SS-SS-------------
---------------------S----------------------------------------------------------
--------------------------------------S-----------------------------------------
----------------------S----------------------------------------------------S----
-----------------------------------S---S---------------------S------------------
----------------------------------------------S-----S---------------------------
-----S-----------S----S----S-----------S--------------------S------SS----S------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------S-------------------------------------S----------------------
----------------S------S-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS
>forward_175
--------------------------------------------------------------------------------
---------------------------------------------------------------------------TGAAC
CGGGGTTTACCACAG-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------
>reverse_1668
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------AAGTACTCCCTCC
GTCCCAA-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------
>forward_203
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------GGTGGTATCCCATGTAGCCC-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------
>reverse_1781
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------TTGGGACGGAGGGAGTAACA----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-------------------------
>forward_1687
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------AAGTACTCCCTCC
GTCCCAA-------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------
>reverse_3304
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------TGGGCTGAAATGAGCGAAGA-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------
>forward_1688
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------AGTACTCCCTCC
GTCCCAAA------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------
>reverse_3942
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------TCCTGTGCTTTCAGAACCAA---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
>forward_1800
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------TTGGGACGGAGGGAGTAACA----------------------------------------
--------------------------------------------------------------------------------
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-------------------------
>reverse_4039
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------CATCCGGGAGGAATGAATTCA---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
>forward_1801
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------TGGGACGGAGGGAGTAACAG---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------
>reverse_4156
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------AGTTT
ACAGTTCTGGTCTGAGTTGT------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
