>input_sequence_30739
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------------------------------------------------------------------------ATGGGGTT
CGTGTCCTTCGCCGGGAGGGTCCTCTTCGCCTCCGTCTTCCTCCTCTCCGCCTACCAGGAGTACGCGCCCCCCTCCCCTC
T------CCCTTCTCCCTATCCGCTTACC---TCCATTGTCGTCGTTGCTCGGTCGCCGCGGTCGATCCTAGCCTGGTTT
CGTCAGATCTGTTGCGGCGCTGGCGGTATC-CGGGGAGCGTGTGGGCAGGGTACGCCCTGGCCTTTGGATCTCGTGATGG
ATAGTGCGTTTTGTAGGGTCTCGGGTCGTGAGGCGCCTGGATCTGGCGTCACGCTTCGTTGTGGTCCATGCGAATAACAG
CGCCCAGAATTTTGTTTCCGCGTGCTCTGATCTAACCTTGGGTCGCTCAATTGCGTCATTGATCTATGTAATTTATGTTT
GAAATTTATGTAGATGCTTT-CTTTTCGTTCACGCTGTCTCATCTTGTGAGCATGAGACTTGT-----------------
-TAGCGTGGTTGCTCTAGTAGCGTCGTAAATATCGTGGACCAGTCGTCTTATATGTACATCCCAATGTCGTTGTCTTATA
TGTACATTCCAATGTCAAATTGTGTTTTGTTCGTGTGTAGTCTCATGCCTA------TAATTACTAGCAAGACTCTGGTC
ATTATCCT--CATGGTCTATGCGTGCTACAGTTGTTAGATTTTTTTTTTTGAAACAAGGCAAAAGTCAGTTGTTAGATTG
GTTGCATCTCCATTGCTGCTTTCATGTCCTTAGTTGCCTGATGACTTGTACCATTGCATCGTGAATTATCTGGAGTCTTC
CT-----------------ACCGGATTGAGTTTTTGTCATAGAGTGAGTTGCAGCCCACTTTC-CATCATGACATATTGA
C-TTGATCAAGGGATTAGTGCTAGTA-GCCACCTTTTGTTTGCACCTAGTTTACTGCTGCTGAATGGCTTAATGGGAACA
GTACGGAACA-TGTGGGATTATATGGAAGTTCTCTTAACTAGCTTGGATGCCATCTGATCAGTTATGTATTCAGAAGCTG
TTAC-GACTGCATGAATTAGATTG---TACTATTCTACCTGTTATATGCTGACGTATTAAGTTTTGAGAAAAGTATATTC
TTCAATGCTTATTGATTTTTAAGGTATTTTTATTGCAGGTTTACTGAATTTGGAACTGATGGCGGGCCAGCTGCAAAGAA
TCTGCAGCCAAAGTTTAACAGTTTCACCAAAAATATCTCCGTACACCTCGGAGTGGTGGTGCCTCATGTAGAGGTGAAAT
TTACTTTATTCATGGTATATACTGTAGGTGGTCTGAATCTTAACCAGTCATTAATTAGTTAGC--TTTGTGTGTTTAATT
TATCCAGTTGAAGCATGTCATTGCCGCTACCATTGGTCTGAAGGGTCTGGGAGGTCTCCTGTTTATCGTCAGCAGTTCAT
TTGGTGCTTATCTCCTGGTATGTACTGATCTGTTGTTACGCTGTATAGTATTTCTTGTTGTGATCTACGCATTCCATTTA
TGTCAAGTGTACATGGCTAAAATTGATTTTCATATCTAGAGTAATGAGGGAATTTCTCTTGTGCTATACTCCATAGTAAT
GTAGGGTCGTGCATGCACAAATGCCTTATTTCATTGTATTC-AAATATCGCCATTTATCTCATAAATATTTGCTACCGAA
AAGCTACTGAATATTATCTTGCATTAGGCATTGTCATTTGGCTGTTCTTTTGAATTTAAACAAGAGCATATTGCTTTAGA
C--TACTGGTCACCTAGCTAGGGCAACTGCATTTCT----GTTCTTCTAGATCTATCAAATCTGGCCACAAAGATTTTGT
TCTTCTAAATTTCATGGTGTTTTGCTTTCAGGAACTGTTATACTCCCATACCATTTGTTTATATTACAAGATGTGTACAT
TTTGTAAAGTACTCCTTGTCGTCTGCACTTGTTTCCTCTAATGTTTTGGCAAGTGCCTAATGTCACTGTTGTGGTTTGCC
CATCTGGTACCATCCTGGCTTCTGATATAAATGCGCTGCAGATATTATCAAAACCTGCATTCTGCTTGTTTGCCCATTTA
ATTGTGCCTTGTGAATATTATGG----------------------------TT---------------------------
--CTATCTGGTGCTGCTTTTGCGCACATTTTGCTGT----------------------------------ATGATGTCCT
AATGAGTACACGATTCTTAACTTCCTTATTTGTTTCTGTGGACACCGTGATATGATAAGTGTGACCCATTGAAGTTTTAG
TCACCTTAGACCTCATGAATTACCGATCCTGTTCCCACTACGTTCATATGTGCTGCGTTTGCTATGTCTCTGCTTCCTTG
TTGTGCGCTTTTCTAATG---AAAGGTATTTGTTTCGGCAGGCCCTCTACCTTGCTTTCATCACGCCTGTTGTCTACGAC
TTCTACAACTACGACATGGAGAAGGCTGAATTCGTGCAGATCTTCATGAAGTTCACACAGGTATGATGCAAATATTCACC
TG-TTTTTGCATGTCTGTTGAACAAGGAATGTCCCAT-GGTAGCTAACCACTCGTGA-TCCCTTTTAACTGTAGAACCTG
GCACTGTTTGGAGCCCTTCTCTTCTTCCTGGGCATGAAGAACTCGGTCCCCAAGAGGCAGGCCAAGAAGAAGGCCGCCAA
GTCCAAGACAACCTAG----------------------------------------------------------------
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--------------------------------------------------------------------
>chr4B_1_TraesCS4B01G316300
GATTGTATTCCAAGGCGATGGTTAGCTAAAAGACATTAAAAAGGCTTGTCAATGATGTGGCCACAAAATCATGATCACGT
TCATGCGTGTTGTAGGCTTGCATTGGATACTTGTTAGTTCCATCATCACGTATTCCATACCATGTTGGGTAGATTAACTC
AAACACATTCTATTAAAAGAAATATGTGATGACCAACATGATAACCCGATACCCCACTATGCATTATCAATACGAGCAAC
TATTCACCA-----AGGTGCATCGTCTTTTCACGAGGAAAATGCAAAGTAATCCCACGAGGTTAATGAGAAAACAACTTG
GTTTCAACTTCCAATACAAGCCGTTTTGTTTTTCTTT----TCTTCAAAAGCCTACCTATTTTA-CACGAGCCCCAATAG
AGAAATAGAGGGGTAAGAGGAAATGTCAAACGCTTCAAGATCTTAGTATTTTACTAAATTTGTTGAAATAATGCCAATGC
AGTGATTGCAAACCATCATTATGTTCATGGCTTT----ATTTTGTACTGATTTTTTGGTAGTTCAATCATGAGTGATCTC
ATTAGTGTGATGTAAGTTGCGACATTAGCCTAGTAATACCCCACCTTGCAGTTTTCAACACAAACTACTTTGAATCTTCA
TTGAGGCACATTAACTATCCACTCGGAAAGAATGCAATATCGGAAAGAATCAGATAAGGTCTAAA-TCAGATTAATTTTG
AATTCTCA--AACATAACCAATTCGAGT------TTATTTCTTTCCAGAAACATATCTCTACTTTCCCAACTCAAATCAA
AGCAACCATGACCGGGGTCCTGTGCGTAATACGGCAGGACTCGAGGGTAAATCCGGGGAGATCCAAACCGGAGGCGCGTC
GCGTTATAAGTACGGAGT-GGGGCTCCGACACGGGCCGTCTCCATCACAGATTCCGAGAGCTCCCAAGGTCGCGCCGCGG
CTCCCC-----CCTCCCCCACCGCATCCCGCCGGTCGCTCGACTCGCCTCA---CCGCCGCCGCCGGTCGACATGGGGTT
CGTGTCCTTCGCCGGGAGGGTCCTCTTCGCCTCCGTCTTCCTCCTCTCCGCCTACCAGGAGTACGCGCCCCCCTCCCCTC
T------CCCTTCTCCCTATCCGCTTACC---TCCATTGTCGTCGTTGCTCGGTCGCCGCGGTCGATCCTAGCCTGGTTT
CGTCAGATCTGTTGCGGCGCTGGCGGTATC-CGGGGAGCGTGTGGGCAGGGTACGCCCTGGCCTTTGGATCTCGTGATGG
ATAGTGCGTTTTGTAGGGTCTCGGGTCGTGAGGCGCCTGGATCTGGCGTCACGCTTCGTTGTGGTCCATGCGAATAACAG
CGCCCAGAATTTTGTTTCCGCGTGCTCTGATCTAACCTTGGGTCGCTCAATTGCGTCATTGATCTATGTAATTTATGTTT
GAAATTTATGTAGATGCTTT-CTTTTCGTTCACGCTGTCTCATCTTGTGAGCATGAGACTTGT-----------------
-TAGCGTGGTTGCTCTAGTAGCGTCGTAAATATCGTGGACCAGTCGTCTTATATGTACATCCCAATGTCGTTGTCTTATA
TGTACATTCCAATGTCAAATTGTGTTTTGTTCGTGTGTAGTCTCATGCCTA------TAATTACTAGCAAGACTCTGGTC
ATTATCCT--CATGGTCTATGCGTGCTACAGTTGTTAGATTTTTTTTTTTGAAACAAGGCAAAAGTCAGTTGTTAGATTG
GTTGCATCTCCATTGCTGCTTTCATGTCCTTAGTTGCCTGATGACTTGTACCATTGCATCGTGAATTATCTGGAGTCTTC
CT-----------------ACCGGATTGAGTTTTTGTCATAGAGTGAGTTGCAGCCCACTTTC-CATCATGACATATTGA
C-TTGATCAAGGGATTAGTGCTAGTA-GCCACCTTTTGTTTGCACCTAGTTTACTGCTGCTGAATGGCTTAATGGGAACA
GTACGGAACA-TGTGGGATTATATGGAAGTTCTCTTAACTAGCTTGGATGCCATCTGATCAGTTATGTATTCAGAAGCTG
TTAC-GACTGCATGAATTAGATTG---TACTATTCTACCTGTTATATGCTGACGTATTAAGTTTTGAGAAAAGTATATTC
TTCAATGCTTATTGATTTTTAAGGTATTTTTATTGCAGGTTTACTGAATTTGGAACTGATGGCGGGCCAGCTGCAAAGAA
TCTGCAGCCAAAGTTTAACAGTTTCACCAAAAATATCTCCGTACACCTCGGAGTGGTGGTGCCTCATGTAGAGGTGAAAT
TTACTTTATTCATGGTATATACTGTAGGTGGTCTGAATCTTAACCAGTCATTAATTAGTTAGC--TTTGTGTGTTTAATT
TATCCAGTTGAAGCATGTCATTGCCGCTACCATTGGTCTGAAGGGTCTGGGAGGTCTCCTGTTTATCGTCAGCAGTTCAT
TTGGTGCTTATCTCCTGGTATGTACTGATCTGTTGTTACGCTGTATAGTATTTCTTGTTGTGATCTACGCATTCCATTTA
TGTCAAGTGTACATGGCTAAAATTGATTTTCATATCTAGAGTAATGAGGGAATTTCTCTTGTGCTATACTCCATAGTAAT
GTAGGGTCGTGCATGCACAAATGCCTTATTTCATTGTATTC-AAATATCGCCATTTATCTCATAAATATTTGCTACCGAA
AAGCTACTGAATATTATCTTGCATTAGGCATTGTCATTTGGCTGTTCTTTTGAATTTAAACAAGAGCATATTGCTTTAGA
C--TACTGGTCACCTAGCTAGGGCAACTGCATTTCT----GTTCTTCTAGATCTATCAAATCTGGCCACAAAGATTTTGT
TCTTCTAAATTTCATGGTGTTTTGCTTTCAGGAACTGTTATACTCCCATACCATTTGTTTATATTACAAGATGTGTACAT
TTTGTAAAGTACTCCTTGTCGTCTGCACTTGTTTCCTCTAATGTTTTGGCAAGTGCCTAATGTCACTGTTGTGGTTTGCC
CATCTGGTACCATCCTGGCTTCTGATATAAATGCGCTGCAGATATTATCAAAACCTGCATTCTGCTTGTTTGCCCATTTA
ATTGTGCCTTGTGAATATTATGG----------------------------TT---------------------------
--CTATCTGGTGCTGCTTTTGCGCACATTTTGCTGT----------------------------------ATGATGTCCT
AATGAGTACACGATTCTTAACTTCCTTATTTGTTTCTGTGGACACCGTGATATGATAAGTGTGACCCATTGAAGTTTTAG
TCACCTTAGACCTCATGAATTACCGATCCTGTTCCCACTACGTTCATATGTGCTGCGTTTGCTATGTCTCTGCTTCCTTG
TTGTGCGCTTTTCTAATG---AAAGGTATTTGTTTCGGCAGGCCCTCTACCTTGCTTTCATCACGCCTGTTGTCTACGAC
TTCTACAACTACGACATGGAGAAGGCTGAATTCGTGCAGATCTTCATGAAGTTCACACAGGTATGATGCAAATATTCACC
TG-TTTTTGCATGTCTGTTGAACAAGGAATGTCCCAT-GGTAGCTAACCACTCGTGA-TCCCTTTTAACTGTAGAACCTG
GCACTGTTTGGAGCCCTTCTCTTCTTCCTGGGCATGAAGAACTCGGTCCCCAAGAGGCAGGCCAAGAAGAAGGCCGCCAA
GTCCAAGACAACCTAGAGCATCTCTCTCTGCCAAGATAGCTGTGGCCGTAGGGGCTTTGCGGGAAAGACGGTCTTATTTA
ACAAAG---CTACCGTACCTGTTCTTCTCT--TATGTGTAAT-GGATCCGTTTTTGAAGGGGGC-GTAGGCCTTACAAGG
TGTGGGTGGCGGTTTAGGCGACTAGATTGTGTATCAT---TATTATGTGCTACTTCCGATTTGATTGTTGTAGGGCTAAA
GATTGTTATCCCATTTGTTTATTCTGCAACCAATATTGTTACTGATGCAAAGGAGATTAGATTACCAAGGTCACTCT--T
GCCTGGGATTTTTTTTGGGTGTGGCTTCATATTGGCAACTTTGCACGGTTCTTTCCGACCATTCTGTTAAGGGCATGTAC
AATGCATAGCCTCAAGGTGATGCCTCACATGTCACGTAGGATCGGATATGACGTAAAGTAGGTTCGGATAGGGAAGCGGG
ATCCTCTTCAGGAGGCGGGTGCTTGAAAAGAAAAAGTGTGGTCCGGTGACAAAAACTGAAAAGGTTGAAGTGAAAAGTAG
AGATGCATGTGTACTAAAGTCTTTATTTTCTATTTCTTAATGAGGCCCACTAGTGATAGCTTGCATTGGGGAAAAAAAAT
AAATGTAGATGCCTTAAATTACTTTTTGTCATGAGGCATATGTATCTATATACCACAATTGTACATGCCCTAATGGGCCT
TTCCGGCCTAAAGGTCCACAGAATCAGTACCAGCTTATGGTGCTTCTACCTGGGATTAAGCCCAACGTCCTTGCCCCGTC
ACACCAACGTGTTGGCTGCGTCCACACATTTGTTGAATGCCTGTGTGTATGTGGGACAAGGTCACATCCCTGAAGGTCGG
CACATCCGTGAAGGTCGGCATGAGCATGAGGCAGCATCCATTTCGCTCTGGATGTGGGACTTGAAGATCGGCGTTTTCCG
GTTTCGCATGAGACATGCACTTTAAGAGCATTACTAGTAGAGCCCTTAAACCCTCAAACCCCTAAAAA
>chr4D_11
CAAGGCT---------GATGGTTAATTAAAAAACATTAAAAAGCCTTGTCAACTATGTGGTAACAAAATCATGATCATCT
TCATGCTTGTTGTGGGCTTGCATTGAATTCTTGTTAGTTCCATCATCACCTATTCTATTTTGTGTTGGGTAGACTAACTC
AAACGCGTTGTATTCAAAGAACTACGTGATGACAAACATGATAGTCTGATTCCCCACTTTGCATTATCAATATGAGCACT
TCCATTACTCGCCGAGGTGCATCAACTTTCCACGAGAAAACTGCAAGATAATCACACAAGGTCAAATAAAAAACAACTTA
GTTTCAAGTTCCAATACAACCCATTTTGACATTTCTTTCTCTCTTCAGAAGCCTACCTATTTTTGCATGAGCCCCAATAG
AGAAGAGAACGTCCCAAGATATTACTCTAGT-----------------TTTTATCAAAATTATTGAAAG--TGCCAATGC
AGTGATTGCAGATCATCATTATGTTCATGCCTATTGTAATTTTCTACTGATTTTTTGTTAGTTCAATCATGAGTGATCCC
ATTAGTGCGGTGTAAGTTGCGATATTTGCCTAATGCCCCACTCTACATTTTCAGTACG-----ACTACTTTGAATCTTCT
TTGACGCGCATTAACTTTTCACCGGGAGAGAATGCAAAGAT------AATCACATAAGGTCTAAAATCAGATTAAATTTA
AATTCTCA--AACAAATCCAGATCCAGTTTGATTTTATGTCTTTCCAGAAACATATCTCTACTTTCCCAACTCAATTCAA
AGCAATCATGATCGGGGCCCCGTGCGTAATACGGCAGGACTCGAGGGTAAATCCGGGGAGATCCAAACCGGAGGCGCGTC
GCGTTATAAGTACGGAGT-GGGGCTCCGACACGGGCCGTCTCCATCACAGATTCCGAGAGCTCCCAAGGTCGCGCCGCGG
CTCCCC-----CCTCCCCCACCGTATCCCGCCGGTCGCTCGCCTCGCCTCA---CCGCCGCCGCCGGTCGACATGGGGTT
CGTGTCCTTCGCCGGGAGGGTCCTCTTCGCCTCCGTCTTCCTCCTCTCCGCCTACCAGGAGTACGCGCCCTCCTCCCGCC
TCCC------TTCTCCCTCTCCGCTTATCATGTCCATTGTCGTTCTTCTTGC-TCCCCGCGGTCGATCCTAGCCTAGTTT
CGTCAGATCTGTCTCCGCGCTGGCGGTATCTCGGGGAACGTGTGGGCAGGGTACGCCCTGGCCTTTGGATCTCGTGACGG
ATAGTGCGCTTTGCAGGGGCTCGGGTCGTGAGGCGCCTGGATCTGGCGTCACGCTTCGTTGTGGTCCGTGCGAATAACAG
CGCCCATAATTTTGTTCCCGCGTGCTCTGATCTAACCTTGGGTCGCTCAATTGCGTCATTGATCTATGT-A-TTAGGTTT
GAAATTTTCGTAGATGCTTT-CTTTTCGTTCACGCTGTCTCATCTGGTGAGCATCAGACTTGT-----------------
-TAGCGTG-----------------GTAAATATCGTGGACCAGTCATCTTAGATGGTACATCAGAAT-------------
-----ATCCCAATGTCAAATTGGGTTTTGTTTGTGTAGTCTC----------ATGTCTAATTACTAGTAAGATTCTGGCC
ATTATATTTGCATGGTCGATGCGTGGTGTT--------------------------------------------------
-----ATCTCCATTGCTGGTCTTATGTCCATAGTTGCGTGATGACTTACTGC--TGCTTCGTGAATTATGTGGAGGCTTG
CG-TTAAAGAAGGAAATAAACCGGATTGAACTTTTGTTATAGAGTGAGTTGCGGCCCACTTTCACATCATGACATATTGA
CATCAACCCA-GGATTAGTGCTGATA-GCCACCTTTTGTCTGCTCCTAATTTACTGCTACCCAATGGCTCAAGGGTAACA
AGTTCAAAAGTTATGGGAATATATCGAAGTTCTCTT-ACTAGCTTGGATGCCATCTGATCAATTATGTATTCAGAAGCTG
TTAC-AACTGCATGAATTAGATTC---TACCATTCTACCTGTTACATGCTGATGTAATAAATTTTGAAAAAAGTATATTC
TTCAATGCATATTGATTTTTAAGTTATTTTTATTGCAGATTCACTGAATTTGGAACTGATGGCGGGCCAGCTGCAAAGAA
TCTTGAGCCTAAGTTTAACAGCTTCACCAAAAATATATCTGTACACCTCGGAGTTGTGGTGCCTCATGTAGAGGTGAAAT
TTACTTTATTCATGG--T---CTTTAGGTGGTCTGAATTTTAACCAGTCATTGATTAGTTTATAATTTGTGTGTTTAATT
TATCCAGTTGAAGCATGTGATTGCTGCTACCATTGGTCTGAAGGGTCTGGGAGGTCTGCTGTTTATCTTGAGCAGTTCAT
TTGGTGCTTATCTCCTGGTATGTACTGATCTGTTGTTACGCTGTATAATA-TTCTTGTTGTGATCTTCACATTCACATTT
ATATCAATGCACATGGCTAAAGTTGATTTTCATATCTGGAGTAATGAGTGGA-TTCTCTTGCACTAGACTCCATAGTAAT
GTAGGGCCATGCATGTACACATGCCTTATTTCATTGTATTC-AA-TATTGCCATTTATCTCCTAAATATTTCCTAACCAA
AAGCTACTGAATATTATCCTGTAGAAGGCATTGTCATTTGGCTGTTCTTTTGAATTTAAACATGAGCATATTGCTTGAGA
CTGTACTGGCCACCTAGCTAGGGCAAATGCATATC----------------------AAATCGGGTCACAGA-----TTT
TCTTCTAAAGTTCACGGTGTTTTGCTTTTAGGAACTGTTATACTCCCATATCATGTGTTTATATTACAAGTTGTGTACAT
TTTGTAAAGTATTCCTTGTCATCTGCACTTGTTTCCTCTAATCTTTTGGCATGTGGCTAATGTCACTGTTGTGTTTTGCC
CATCTGGTAGCATCCTGGCTTCTGATATAAATGCGCTGCCGCTGTTATCAAAACCTGCATTCTGCTTGTTTGCCCATTTA
ATTGTGCCTTGCGAATTATGGTTAATAACTGCTGATTGATGGGGTCTTGGTTT---------------------------
--CTATCTGGTGCTGATTTTGCGCACATTTTGCTGCAC----------------------------------GATGTCCT
AATGAGAACACAGTTCTTAACTTCCGCATTTGTTTCTGTGTACACCGTGGTATGATAAGTGTGACCCATTGAAGTTTTAG
ACACCTTTGGCCTTATGAATTACCGATCCTGTTCCCACT--GTTGAGATGTGCTGCGTTTGGCATGTCTCTGCTTCCTCC
TTGTGCACTTGTCTAATA---AAAGGTATTTGCTTCGGCAGGCCCTCTACCTTGCTTTCATCACACCGGTTGTCTACGAC
TTCTACAACTACGACATGGAGAAGGCTGAATTTGTGCAGATCTTCATGAAGTTCACACAGGTACGATGCCAATATTCATC
TG---TTTGCATGTCTGTTGAACAAGGAATGTCCCAT-GGTAGCTAACTACTTGTGA-TCTCTTGTCACTGTAGAACCTG
GCGCTGTTTGGAGCCCTTCTCTTCTTCCTGGGCATGAAGAACTCGGTCCCCAAGAGGCAGGCCAAGAAGAAGGCCCCCAA
GTCCAAGACAACCTAGAGCATCTCTCTCTGCCAAGATAGTTGTGTCCGTAGGGGCTTTGCGGGAAAGACGGTCTTATTTA
ACAAAG---CTACCGTACCTGTTCTTCTCTTATATGTGTAAT-GGATCCGTTTTTGAAGGGGGC-GCAGGCCTTACAAGG
TGTGGGTGGCGGTTTAGGCGACTAGATTGTGTATCAT---TATTATGTGCTACTTCCGATTTGATTGTTGTAGGGTTAAA
GATTGTTATCCCATTTATTTATTTTGCAACCAATATTGATACTGATGGAAAAGAT-----ATTACCAAGGTCACTCTGCC
TGCGA----TTATTTTTGGTGTGGCTTCATCTGGGCAACTTTGCATTGTTCCTATAAACCAATCTGTTAACGGGC-----
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--------------------------------------------------------------------
>chr4A_675
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------------------------------------------------ATCAAATAAGGTCTCAA-GCAGATTAATTTTG
AATTCTTAATAACATAACCAATTTGATT------TGATTTCTTTCCATAAACAAATCTCTACTTTCCCAACTCAAATCAA
AGCAATCATGACCAGGGTCCCGTGCGTAATACGGCAGGACTCTGGGGTAAATCCGGGGAGATCCAAACCGGAGGCGCGTC
GCGTTATAAGTACGGAGTGGGGGCTCCGACACGGGCCGTCTCCATCACAGATTCCGAGAGCTCCCAAGGTCGCGCCGCGG
CTCCTACCCCGCCTCCCCCACCGTATCCCGCCGGTCGCTCGCCTCGCCCCGCCGCCGCCGCCGCAGGTTGACATGGGGTT
CGTGTCCTTCGCCGGGAGGGTCCTCTTCGCCTCCGTCTTCCTCCTCTCCGCCTACCAGGAGTACGCGCCCTCCTCCCGCC
TCCCCTCCCCTCCTCCCTCTCCGCTTACC---TCCACTGCCGTTCCTATTGC-TCCCCGCGGTCGATTCTAGCCTGGTTT
CGTCAGATCTGTCGCCGCGCTGGCGGAATCTCGGGGGACGTGCGGGCAGGGCACGCCCTGGCCTTTGGATCTCGTGATGG
ATAGCGCGCTTTGCAGGGTCTCGGGTCGTGAAGCGCCTGGATCTGGCGTCACGCTTCGTTGTGGTCCATGAGAATAACAG
CGCCCAAAATCGTGTTCCCGCGTGCTCTGATCTAACCTAGAGTCGCTCAATTGCGCCACTGATCTATGT-ATTTATGTTT
GAAATTTCCGTAGATGCTTTTCTTTTCGTGCACGCTGTCTCATCTGGTGGGCATCGGACTTTGTTAGCGTGATTTATCTA
GTAGCGTG-----------------GTAAATATTGTGGACCAGTCATCTTAGACAATACATCAGAAT-------------
-----ATCCCGATGTCAAATTTGGTTTTGTTTGTGTGCAGTCTCATGCCTAAATGCCTAATTACTAGCAAGACTCTGGTC
ATTATCCT--CATGGTCGATGCGTGCTACAGTTGTTTGATTGGTG-----------------------------------
---GCATCTGCATTGCTGCTTTCATGTCCGTAGTTGCCTGACGACTTGTACCATTGCATCGTGAATTATCTGGAGTCTAT
CCATTAAACACGGATATATACTGGATT--GTTTTTGTCATAGAGTGAGCTGCAGCCCACTTTCACATCATGACATATTGA
CATTGATCAGGGGATTAGTGCCAGTAGGCCACCTTTTGTTTGCACCTAGTTTACTGCTGCCGATTGGCTTAATGGGAACA
GGTACAAAACTTGTGGGATTATATGGAAGTTCTCTTCACTAGCTTGGATGCGATCTGATCAATTATGTATTCTGAAGCTG
TTACTGACTGCATGAATTAGATTGTAGTACTATTCTACCTGTTATATGCTGATGTATTAAGTTATTTGTA----------
---AATGCATACTGATTTTTAAGTTATTTTTATTGCAGGTTCACTGAATTTGGAACTGATGGCGGGCCAGCTGCAAAGAA
TCTTGCGCCTAAGTTTAACAGTTTCACCAAAAATATTTCTGTACACCTCGGAGTTGTGGTGCCTCATGTAGAGGTGAAAT
TTACTTTATTCATGG--TATACTTTAGGTGGTCTGGATTTTAACCAGTCATTAATTAGTTTG--ATTTGTGTGTTTAATT
TATCCAGTTGAAGCATGTGGTTGCTGCTACCATTGGTCTGAAGGGTCTGGGTGGTCTCCTGTTTATCGTCAGCAGTTCAT
TTGGTGCTTATCTCCTGGTATGTACTGATCTGTTGTTATGCTGTATAATATTTCTTGTTGTGATCTACGCATTCACATTT
ATATCAGTGCACATTGCTAAAATTGATTTTCATATCTAGAGTAATGAGGGAATTTCTCTTGTGTTAGATTCAATAGTTAT
ATAGGGCCGTGCATGCACAAACGCCCTATTTCATTTTATTCAAA-TATTGCCATTTATCTAATAAATATTTCCAAACCAA
AAGCTACTGAATATTATCCTGCAGAAGGCTTTGTCATTTGGCTGTTCTTTAGAATTTAAGCATGAGCATATTGATTGAGA
CTGTACTGCTCACCTAGCTAGGGCAACTGCGTTTCTCTAGGTTCTTCTAGATCTATCAAATCTGGTCACAAAGAATTTTT
TCTTCTAAATTTCATGGTATTTTGCTTTCAGGAACTGTTATACTCCCATATCATGTGTTTATATTACTAGATGTGTACAT
TTTATAAAATATTTTTTGTCGTCTGCACTGGTTTCCTCTAATTTTTTG-CAAGTGGCTAATGTCACTGTTGTGTTTTGCC
CATCTGGTACCATCCTCGCTTCTGATATAAATGTGATGCCGATTTTATCAAAACCTGCATTCTGCTTGTTAGCCCATTTA
ATTGTGCCTTGTGAATATTATGG----------------------------TTGATAACTGCTGATTGATGTGGTCTTGG
TTCTATCTGGTGCTGCTTTTGTGCACGTTTTGCTGCATGATGTCCCAAAATGAGAACACAACTTTGCTGCATGATGTCCT
AATGAGAACACATTAGTTTTTAA-CTTATTTGTTTCTGTGGACACCGTGATATGACAAGTGTGACCAATTGAAGTTTTAG
ACACCTTTG------------ACCGACCCTGTTTCCACTATGTTGATTTGTGCTGTGTTGA-TATGTCTCTGCTTCCTCC
TTGTGCACTTATCTAATGATGAAAGGTATTTGTTCCGGCAGGCTCTCTACCTTGCTTTCATCACGCCCGTCGTCTATGAC
TTCTACAACTACGACATGGAGAAGGCTGAATTTGTGCAGATCTTCATGAAGTTCACACAGGTATGAAGCAAATATCCACC
TGTTTTTTGCATGTCTGTTGAACAAGGAATGTCCCATTGGTAGCTAACTTCCTGTGATTCCCTTTTAACTGCAGAACCTG
GCGCTGTTTGGAGCCCTTCTCTTCTTCCTGGGCATGAAGAACTCGGTCCCCAAGAGGCAGGCCAAGAAGAAGGCCCCCAA
GTCCAAGACAACTTAGATAGTTGCGGAGAAGAC--------------------------------------TCTTATTTA
ACAAAGAAGCTACCGTACCTGG--TTCTCT--TATGTGTAATCGGATCCGTTTTTGAAGGGGGGTGCAGGCCTTACGAGG
TGTGGGTGGCGGTTTAGGCGACTAGATTGTGTATCATTATTATTATGTGCTACTTCCGATTTGATTGTTGTAGGGCTAAA
GATTGTTATCCCATTTGTTTATTTTGCAACCAATATTGTTACTGATGGAAAGGAT-----GTTACCAAGGTCACTACTCT
GCCTGGGATTTATTTTTGGTGTGGTTTCATCTTGGGCAGCTTT-------------------------------------
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--------------------------------------------------------------------
>SNPs
S-SS-SSSSSSSSSSS--------SS-----S-----------S--------SS------SS---------------SS-
------S------S-----------S--S--------------------S-----S--SSSS-----------S------
----S-S--S----S------S--S--------S---------SS-S---S-------S-------------S-----SS
-SSSSSS-S--------------SS----S------S---S-----SS-----S---S----S--SS-S----------S
-------S-----------S--S-----SSS--SS------------S---------------S---S------------
----SSSS-S-SSSS-SSSS-SSSS--S-SSSSSSSSSSSSSSSSSSS-----SS---S--S------SSS---------
----------S-S----------------S--S----------S-------------S--------------------S-
-------S-S------------S---S-----S-SSSS-S-SSSSSSSSSSSSS-SSSSSSSS----------------S
----S--S--------S-S---SS---S---------SSSSSSSSSS-----S---------------------------
--------------------------------------------------------------------------------
-----S--------------S-----------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------S-----------------S--------------------------------------
----------------------------------------------------------------------S------SS-
------------------S------------------------SS--SS-SSS--S------------------------
------------S--S---------------------S------------------------------------------
--------S----S------------------------------------------------------------------
------S---------S----------------------------------------------------S----------
-------SS------------------------------------S--------S-------------------------
--------SSSSSSSSSSSSSSSSS--------------------S-----S---SSSSSS-SS-SSSSSSSSSSSSSSS
SSSSS--S--------------S--------S-----S------------------------------------------
-----------------S------------------S----SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS--------------------------S-------------------------------------------------S
-S------------------------------------------------------------------------------
------------------------------------------------------------S-------------------
-SSSSS--SS--------------------------S------------------------S------------------
----------------------------------------------------S---------------------------
--------S--------------S-----------------S--------------------------------------
---SS----S--------------------------S--S--------------S-------------------------
---------------SS------S--------------S---------------------S-S-----------------
------------------S-----S-------------------------------------------------------
-----------------------------------------------S--------------------------SSS--S
SSSSS----S--------------------------------------------------------S-------------
------S-------------------------------------S---S----------------------S---S-S--
------------------S----SS-------------------------------------S-------------S---
-----------------------------------------------------------------S--------S---S-
--------------------------------------------------S---S-------------------------
-----------S------------------------------S------------S-----------------S------
---------------------------------------S---S------------------------------------
--------------------------------------------------------------------------------
-----------------------------------S--------------------------------------------
------S----SS-------------------------------------------------------------------
S------S-S---S--------------------------S---S----------------S----------------SS
------S---S--------------------------------------------------------S------------
--------------------------------S-----------------------------------------------
------------------------------------------------S---S---------------------------
--S------------------------------------------------------------------------S----
---------------------------------------S----S-----------------------------------
------------------------------------------------------------------S-------------
--------------------------------------------------------------------------------
-----------------------S-----------------------S------SSSSSS--------------------
-----------S----S-------------S--------------SS----S-SSSS----S--------S--SSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_617
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------ACCCCACCTTGCAGTTTTCA-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------
>reverse_2419
--------------------------------------------------------------------------------
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------------------CATTGCCGCTACCATTGGTC------------------------------------------
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--------------------------------------------------------------------
>forward_2244
--------------------------------------------------------------------------------
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----------------------------------------------------------------GGCCAGCTGCAAAGAA
TCTG----------------------------------------------------------------------------
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--------------------------------------------------------------------
>reverse_4181
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--------------------TGCCTCACATGTCACGTAGG----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------
