CLUSTAL X (1.81) multiple sequence alignment input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 TGGAGCACGTTGCTCAGGCACGATCGTGTACTCTTGATGAATAAAAAGGG chr5B_563 ACATGCC------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 TTCCC--------------------------------------------- SNPs -SSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 TAAAACAGAAAAGCTGCAGATGTAGAGCGCAGCACAAAAAAACTTCAGTG chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 TCTCTGCGTGTTCTTCCTCTCTGAATTCTCTCTCTCTCTCACGATCGAGC chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 TAGAGTTTAGGGAGACATACTGAAGGCACAATCAACAAGAACATCACAAA chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 ATCATAAAAGAGAGCTTCGCCTCCTGAATTTTTAATTAAAAAGAATTAGG chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 GATTACAGATTGATCAATTATAAAATGTCACAAACTGAATATGTCACAAA chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 GGGGATTGCGAATTAGACTACATATCCAGTCCATCGACCAACCAATGACA chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_345 -------------------------CCAGTCCATCGACCAACCAA----- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 AGGACAAGCATTGCATACTCACAAGGACAAGCATTGATTAGGGGAGTGTT chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 ATGAATTAATTAAGTTAATTAATATGTTAATCCCTGCTATGTAGGTTGTC chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 TCTTTGACAACTGCCTCTTTTTGTAAACCGCCTTTGTACTGGGTATATAT chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 ACCCCTAATCTTCAATCAATGAGAAAACTGTTCATTCCATCGTCTCTCTC chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 GTTTCTCTCTAAACATCTCTAAGCACCCACTGCAGAATAACATTTTCCCT chr5B_563 ------------------CTAAGCACCCGCGGCGGAATTACAT-TTCCCA chr5A_616 -------------------------------------------------- chr5B_1998 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSS----------S-S--S----S----S-----S forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 AAGTTAGAGGATGTCGTGGCAAAAAATCAGGGTGCTATATTTATCTGACC chr5B_563 AAGTTAGAAGATGTCGTGGCAAAAAATCGGGGTGCTATATTTATCTGACC chr5A_616 ---------------GTGGCAAAAAATCAGGGTGCTATATTTATCTGACC chr5B_1998 -------------------------------------------------- SNPs --------S----------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 TGAATGCAGCATGATATCTAGCAGCTCGAGAGTTTCAGAAAAGGGAAGAG chr5B_563 AGAATGCAGCATGATATCTAGCAGCTCGAAAGTTTGAGAAAAGGGAAGAG chr5A_616 TGAATGCAGCATGATATCTAGCAGCTCGAAAGTTTCAGAAAAGGGAAGAG chr5B_1998 -------------------------------------------------- SNPs -----------------------------S-------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 ----AAAGCAGTTCGCATGCAATAATTCCCCCCGCAAAATGCTCTCTTCC chr5B_563 CTAGAAAGCACTTGGCATGCAATAA---CCCCCGCAAAATGCTCTCTTCC chr5A_616 CTAGAAAGCACTTGGCATGCAATAA---CCCCCGCAAAATGCTCTCTTCC chr5B_1998 -------------------------------------------------- SNPs ----------S--S-----------SSS---------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 ACACACGCGAGCACTGCAATCTCCCA----TGTTCCCCTGTTCATGGTCA chr5B_563 ACACTTCCGACTGC-----TCCCCCGTCCCGGTTCCCCTGTTGATGGTCA chr5A_616 ACACTTCCGACTGC-----TCCCCCT----GGTTCCCCTGTTGATGGTCA chr5B_1998 -------------------------------------------------- SNPs ----SSS---SSS-SSSSS--S---S----S-----------S------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 AATCAATCAAACCAGAGTCAATTAATCTTCTTCCTGCTGTTCTTCGTCGA chr5B_563 AATCAATCAAACCAGAGTCAATTAATCTTCTTCCTGCTCTTCTTCGTGGA chr5A_616 AATCAATCAAACCAGAGTCAATTAATCTTCTTCCTGCTGTTCTTCGTCGA chr5B_1998 -------------------------------------------------- SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 TGGAATCCAAAATAAAATAAAGTGGTTTTGTTAGCTGGCACGCAGCGCGC chr5B_563 TCGAATCCACAATAAAATGAAGTA-----GTTAGTTGGC----------- chr5A_616 TCGAATCCACAATAAAATAAAGTA-----GTTAGTTGGTACGCAACGCGC chr5B_1998 -------------------------------------------------- SNPs -S-------S-------------SSSSSS-----S---------S----- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 CGTGTGGGTGTGGGTGTAATCCAAGAGGAATCGTTGGAAGAAGAGGATCG chr5B_563 ---ACGC--GTGGGTGTAATCGAAGAGGAATT----GAAGAAGAGGATCG chr5A_616 CGTACGC--GTGGGTGTAATCCAAGAGGAATT-------GAAGAGGATCG chr5B_1998 -------------------------------------------------- SNPs ---SS-SSS----------------------SSSSS-------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 ATCCTGGATTGGATTGGATTGGATTGGATTCAAGAAGAGCAGC----GGG chr5B_563 ATCTTGGATTGGATCTGATTGGATTGGATTCAAGAAGAGCAGCGGGAGGC chr5A_616 ATCTTGGATTGGATCTGATTGGATTC--------AAGAGCAGC----GGC chr5B_1998 -------------------------------------------------- SNPs ---S----------SS---------------------------------S forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 ------------ATGGATTGCTCGATGACGAGCAGCGTGCTGTCGGCCAA chr5D_1_TraesCS5D01G002400 AGGCCGCGCGCCATGGATTGCTCGATGACGAGCAGCGTGCTGTCGGCCAA chr5B_563 --------CGCCATGGATTGCTCGATGACGAGCAGCGTGCTGTCGGCCAA chr5A_616 --------CGCCATGGATTGCTCGATGACGAGCAGCGTGCTGTCGGCCAA chr5B_1998 -------------------------------------------------- SNPs SSSSSSSS------------------------------------------ forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 CTACAACACGGTGCTGTTCGAGTTCGGCGTCATCCTCGTCACCAGCAAGA chr5D_1_TraesCS5D01G002400 CTACAACACGGTGCTGTTCGAGTTCGGCGTCATCCTCGTCACCAGCAAGA chr5B_563 CTACAACATGGTGCTGTTCGAGTTCGGCGTCATCCTCGTCACCAGCAAGA chr5A_616 CTACAACACGGTGCTGTTCGAGTTCGGCGTCATCCTCGTCACCAGCAAGA chr5B_1998 -------------------------------------------------- SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 TCTTGTACGCCCTCCTCCGCAACGCCTACCAGCCCCGCGTCTTCTCCGAC chr5D_1_TraesCS5D01G002400 TCTTGTACGCCCTCCTCCGCAACGCCTACCAGCCCCGCGTCTTCTCCGAC chr5B_563 TCTTGTACGCCCTCCTCCGCAACGTCTACCAGCCCCGCGTCTTCTCCGAC chr5A_616 TCTTGTACGCCCTCCTCCGCAACGTCTACCAGCCCCGCGTCTTCTCCGAC chr5B_1998 -------------------------------------------------- SNPs ------------------------S------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 CTCCTCGTACGCCTCCTCCACGATCGCCATTAATTAATTCCGTTTCTTAA chr5D_1_TraesCS5D01G002400 CTCCTCGTACGCCTCCTCCACGATCGCCATTAATTAATTCCGTTTCTTAA chr5B_563 CTCCTCGTACGCCTCCTCCGCGATCGCCATTAATTACCTTCGTTTCT--- chr5A_616 CTCCTCGTACGCCTTCTCCACGATCGCCATTAATTCCCTTTGTTTCT--- chr5B_1998 -------------------------------------------------- SNPs ------------------------------------SS-S-------SSS forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 TTTCTCTCTCTGTCTCTCTCTGTTGGCGATCGCCATTGACGTTCCTTCCC chr5D_1_TraesCS5D01G002400 TTTCTCTCTCTGTCTCTCTCTGTTGGCGATCGCCATTGACGTTCCTTCCC chr5B_563 -----CTCTCTTTCTCTTTC--TTGGCGATCGCCATTGACATTCCTTTCC chr5A_616 -----CTCTCTTTCTCTTTC--TTGGCGATCGCCATTGACATTCCTTTCC chr5B_1998 -------------------------------------------------- SNPs SSSSS------S-----S--SS------------------S------S-- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 ---------------------------------------CGTTCCTTCCC reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 TGTCGTCAATGGCGATCGATAT----ATGGCAGCTGGGCATCATCCTCGC chr5D_1_TraesCS5D01G002400 TGTCGTCAATGGCGATCGATAT----ATGGCAGCTGGGCATCATCCTCGC chr5B_563 TGTCGTCGTCAATGGCGAATGCGGCAATGGCAGCTGGGCATCATCCTCGC chr5A_616 TGTTGG---CAATGGCGAATGCGGCAATGGCAGCTGGGCATCATCCTCGC chr5B_1998 -------------------------------------------------- SNPs -------SSSSSS-SSSS--SS---------------------------- forward_345 -------------------------------------------------- reverse_1267 ----------------CGATATATGGCAGCTGGGCA-------------- forward_1259 TGTCGTCAA----------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 GCAGTTCCGCGTCCTCTCCATCACCAACGCCATCAGCCTGGTGTTCGGCA chr5D_1_TraesCS5D01G002400 GCAGTTCCGCGTCCTCTCCATCACCAACGCCATCAGCCTGGTGTTCGGCA chr5B_563 GCAGTTCCGCGTCCTCTCCATCACCAACGCCATCAACCTGGTGTTCGGCA chr5A_616 GCAGTTCCGCGTCCTCTCCATCACCAACGCCATCAACCTGGTGTTCGGCA chr5B_1998 -------------------------------------------------- SNPs -----------------------------------S-------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 ----------------TCCATCACCAACGCCATCAG-------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 AGATCGGCGGCTTCATCTTCGCGCCCTACCTCTTCGCGCTCGGCGTCGAG chr5D_1_TraesCS5D01G002400 AGATCGGCGGCTTCATCTTCGCGCCCTACCTCTTCGCGCTCGGCGTCGAG chr5B_563 AGATCGGCGGCTTCATCTTCGCGCCATACCTCTTCGCGCTCGGCGTCGAG chr5A_616 AGATCGGCGGCTTCATCTTCGCGCCCTACCTCTTCGCGCTCGGCGTCGAG chr5B_1998 -------------------------------------------------- SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 ATGGACCCCTTCTCGCTCCTCGACAGCCCCGCCGCCGACGCCGTCGTCGC chr5D_1_TraesCS5D01G002400 ATGGACCCCTTCTCGCTCCTCGACAGCCCCGCCGCCGACGCCGTCGTCGC chr5B_563 ATGGACCCCTTCTCGCTCCTCGACACCCCCGCCGCCGACGCCGTCATCGC chr5A_616 ATGGATCCCTTCTCGCTCCTCGACAGCCCCGCCGCCGACGCCGTCATCGC chr5B_1998 -------------------------------------------------- SNPs ---------------------------------------------S---- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 CTACGCCGGCATCGCCTCCACCTGCGTCCTCGTCACGCTCTGCCACGGCG chr5D_1_TraesCS5D01G002400 CTACGCCGGCATCGCCTCCACCTGCGTCCTCGTCACGCTCTGCCACGGCG chr5B_563 CTACGCCGGCATCGCCTCCACCTGCGTCCTCGTCACGCTCTGCCACGGCG chr5A_616 CTACGCCGGCATCGCCTCCACCTGCGTCCTCGTGACGCTCTGCCACGGCG chr5B_1998 -------------------------------------------------- SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 CCATCACCTCCACCGCTCGTACCCACACGGGCATCGTCCACGAGCGCTCC chr5D_1_TraesCS5D01G002400 CCATCACCTCCACCGCTCGTACCCACACGGGCATCGTCCACGAGCGCTCC chr5B_563 CCATCACCTCCACCTCTCGTACCCACACCGGCATCGTCCACGAGCGCTCC chr5A_616 CCATCACCTCCACCTCTCGTACCCACACGGGCATCGTCCACGAGCGCTCC chr5B_1998 -------------------------------------------------- SNPs --------------S----------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 CTCCGCGCCTTCCTCGGCCTCGCCGCCGCGCTCGCCAACACCGCCTCCCC chr5D_1_TraesCS5D01G002400 CTCCGCGCCTTCCTCGGCCTCGCCGCCGCGCTCGCCAACACCGCCTCCCC chr5B_563 CTCCGCGCCTTCCTCGGCCTCGCCGCCGCTCTCGCCAACACCGCCTCCCC chr5A_616 CTCCGCGCCTTCCTCGGCCTCGCCGCCGCGCTCGCCAACACGGCCTCCCC chr5B_1998 -------------------------------------------------- SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 CGTCCTCACCCGCCTCGCCACCGACCTCAAGATCGCCAAGACCAACGTCG chr5D_1_TraesCS5D01G002400 CGTCCTCACCCGCCTCGCCACCGACCTCAAGATCGCCAAGACCAACGTCG chr5B_563 CGTCCTCACCCGCCTCGCCACCGACCTCAAGATCGCCAAGACCAACGTCG chr5A_616 TGTCCTCACCCGCCTCGCCACCGACCTCAAGATCGCCAAGACCAACGTCG chr5B_1998 -------------------------------------------------- SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 GCCGCCTCGCCGTCGGCGCCGGCATCACCTCCGACATGCTCACCACCCTG chr5D_1_TraesCS5D01G002400 GCCGCCTCGCCGTCGGCGCCGGCATCACCTCCGACATGCTCACCACCCTG chr5B_563 GCCGCCTCGCCGTCGGTGCCGGCATCACCTCCGACATGGTCACCACCCTA chr5A_616 GCCGCCTCGCCGTCGGCGCCGGCATCACCTCCGACATGGTCACCACCCTG chr5B_1998 -------------------------------------------------- SNPs --------------------------------------S----------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 --------------------GGCATCACCTCCGACATGC----------- reverse_3636 -------------------------------------------------- input_sequence_30697 CTCATCGCGCTCGGCACCATGGTCTGGCGCGACAGCGACGCCGACGCCGA chr5D_1_TraesCS5D01G002400 CTCATCGCGCTCGGCACCATGGTCTGGCGCGACAGCGACGCCGACGCCGA chr5B_563 CTCATCGCGCTCGGCAGCATGGTGTGGCGCGACAGCGACGCCGACGCCG- chr5A_616 CTCATCGCGCTCGGCAGCATGGTCTGGCGTGACAGTGACGCCGACGCCG- chr5B_1998 -------------------------------------------------- SNPs ----------------S--------------------------------S forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 CGCCGCGCCCTTCGCGCAGCCCGCGCTCACGGCGTCCGTCCTGGCGGTCG chr5D_1_TraesCS5D01G002400 CGCCGCGCCCTTCGCGCAGCCCGCGCTCACGGCGTCCGTCCTGGCGGTCG chr5B_563 --ACGCGCCCTTCGCGCAGCCCGCGCTCACGGCGTCCGTCCTCGCGGTCG chr5A_616 --CCGCGCCCTTCGCCCAGCCCGCGCTCACGGCGTCCGTCCTCGCGGTCG chr5B_1998 -------------------------------------------------- SNPs SS----------------------------------------S------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 TCGTCATGTCCGCCTTCATGTCCCGGGCCATGGCCGAGTGGGTGGACGGC chr5D_1_TraesCS5D01G002400 TCGTCATGTCCGCCTTCATGTCCCGGGCCATGGCCGAGTGGGTGGACGGC chr5B_563 TCGTCATGTCCGCCTTCATGTCCCGGGCCATGGCCGACTGGGTGGACGGC chr5A_616 TCGTCATGTCCGCCTTCATGTCCCGGGCCATGGCCGACTGGGTGGACGGC chr5B_1998 -------------------------------------------------- SNPs -------------------------------------S------------ forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 CGCAACCCCGAGGGCCGGCGCATGCGCGGCTTCGACCTTTCCCTCGTCGC chr5D_1_TraesCS5D01G002400 CGCAACCCCGAGGGCCGGCGCATGCGCGGCTTCGACCTTTCCCTCGTCGC chr5B_563 CGCAACCCCGAGGGCCGGCGCATGCGCGGCTTCGACCTTTCCCTCGTCGC chr5A_616 CGCAACCCCGAGGGCCGGCGCATGCGCGGCTTCGACCTTTCCCTCGTAGC chr5B_1998 -------------------------------------------------- SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 GCTCGTGGCCGCCACGCTCTGCTGGTTCATCTCCGTGCTCCGCCTCGACA chr5D_1_TraesCS5D01G002400 GCTCGTGGCCGCCACGCTCTGCTGGTTCATCTCCGTGCTCCGCCTCGACA chr5B_563 GCTCGTGGCCGCCACGCTCTGCTGGTTCATCTCCGTGCTCCGCCTCGACA chr5A_616 GCTCGTGGCCGCCACGCTCTGCTGGTTCATCTCCGTGCTCCGCCTCGACA chr5B_1998 -------------------------------------------------- SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 TCAACATGGCCGCCTTCCTCGTCGGCCTCGCCTTCCCCAGCGACGGCCGG chr5D_1_TraesCS5D01G002400 TCAACATGGCCGCCTTCCTCGTCGGCCTCGCCTTCCCCAGCGACGGCCGG chr5B_563 TCAACATGGCCGCCTTCCTCGTCGGCCTCGCGTTCCCCAGTGACGGCCGG chr5A_616 TCAACATGGCCGCCTTCCTCGTCGGCCTCGCCTTCCCCAGCGACGGCCGG chr5B_1998 -------------------------------------------------- SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 GTGTCGCGGCTGCTCGTCAGCAAGATCAACTTCGTGCTCTCCTCCTTCGT chr5D_1_TraesCS5D01G002400 GTGTCGCGGCTGCTCGTCAGCAAGATCAACTTCGTGCTCTCCTCCTTCGT chr5B_563 GTGTCGCGGTTGCTCGTCAGCAAGATCAACTTCGTGCTCTCCTCCTTCGT chr5A_616 GTGTCGCGGTTGCTCGTCAGCAAGATCAACTTCGTGCTCTCCTCCTTCGT chr5B_1998 -------------------------------------------------- SNPs ---------S---------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 GCTGCCGCTCTACGTCGCCCACGTCTGCCTCTCGCTCCGGCAGACCACCG chr5D_1_TraesCS5D01G002400 GCTGCCGCTCTACGTCGCCCACGTCTGCCTCTCGCTCCGGCAGACCACCG chr5B_563 GCTGCCGCTCTACGTCGCCCATGTCTGCCTCTCGCTCCGGCAAACCACCG chr5A_616 GCTGCCGCTCTACGTCGCCCACGTCTGCCTCTCGCTCCGGCAGACCACCG chr5B_1998 -------------------------------------------------- SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 ACGACATCGAGGTCGCGGGCCTCAAGCCCGACGAGGGCCTCCGCGCCTAC chr5D_1_TraesCS5D01G002400 ACGACATCGAGGTCGCGGGCCTCAAGCCCGACGAGGGCCTCCGCGCCTAC chr5B_563 ATGACATCGAGGTCGCGGGCCTCAAGCCCGACGAGGGCCTCCGCGCCTAT chr5A_616 ACGACATCGAGGTCGCGGGCCTCAAGCCCGACGAGGGCCTCCGCGCCTAC chr5B_1998 -------------------------------------------------- SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 GTCATGCAGCTGCCCTTCCCCTGGTGGAAGGTCTTCTTGGCCACCTCCAT chr5D_1_TraesCS5D01G002400 GTCATGCAGCTGCCCTTCCCCTGGTGGAAGGTCTTCTTGGCCACCTCCAT chr5B_563 GTCATGCAGCTGCCCTTCCCATGGTGGAAGGTCTTCTTGGCCACCTCCAT chr5A_616 GTCATGCAGCTGCCCTTCCCATGGTGGAAGGTCTTCTTGGCCACCTCCAT chr5B_1998 --------------------CTGGTGGAAGATCTTCTTGGCAACCTCCAT SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 GGGCACGCTGGGCAAGCTCGTCGGCTGCACCGGCGTCGGCCTGCTCCGGG chr5D_1_TraesCS5D01G002400 GGGCACGCTGGGCAAGCTCGTCGGCTGCACCGGCGTCGGCCTGCTCCGGG chr5B_563 GGGCACGCTCGGCAAGCTCGTCGGCTGCACCGGCGTCGGCCTGCTCCGGG chr5A_616 GGGCACGCTCGGCAAGCTCGTCGGCTGCACCGGCGTCGGCCTGCTCCGGG chr5B_1998 GGGCACGCTTGGCAAGCTCGTCGG----------------CTGCTCCGGG SNPs ---------S---------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 GCCTCGGCTGGCTCGAGGCGCTCGCGCTCGGCATGCTGCTCAACGTCAAG chr5D_1_TraesCS5D01G002400 GCCTCGGCTGGCTCGAGGCGCTCGCGCTCGGCATGCTGCTCAACGTCAAG chr5B_563 GCCTCGGCTGGCTCGAGGCGCTCGCGCTCGGCATGCTGCTCAACGTCAAG chr5A_616 GCCTCGGCTGGCTCGAGGCGCTCGCGCTCGGCATGCTGCTCAACGTCAAG chr5B_1998 GCCTCGGCTGTCTCGAGGCGCTCGCGCTCGGCATGCTGCTCAACGTCAAG SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 GGCTACTTCCACATCTACTGCGCGCTCGCCGCCTTCGAGGCCGGCATCA- chr5D_1_TraesCS5D01G002400 GGCTACTTCCACATCTACTGCGCGCTCGCCGCCTTCGAGGCCGGCATCA- chr5B_563 GGCTACTTCCACATCTACTGTGCGCTCGCCGCCTTCGAGGCCGGCATCA- chr5A_616 GGCTACTTCCACATCTACTGTGCGCTAGCCGCCTTCGAGGCCGGCATCA- chr5B_1998 GGCTACTTCCACATCTACTGCGCGCTCGCCGCCTTTGAGGCCGGCATCAT SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 --TCACCGACAAGTCCTTCATGGCCATCATCTTCGTGGTGGCGCTCAACG chr5D_1_TraesCS5D01G002400 --TCACCGACAAGTCCTTCATGGCCATCATCTTCGTGGTGGCGCTCAACG chr5B_563 --TCACCGACAAGTCCTTCATGGCCATCATCTTCGTGGTGGCGCTCAACG chr5A_616 --TCACCGACAAGTCCTTCATGGCCATCATCTTCGTGGTGGCGCTCAACG chr5B_1998 ATTCACCGACAAGTCCTTCATGGCCATCATCTTCATGGTGGCGCTCAACG SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 TCGCCGTCACGCCCATGGTGGGGATCGGGATCGCGTCCTGGGCGCGCCGG chr5D_1_TraesCS5D01G002400 TCGCCGTCACGCCCATGGTGGGGATCGGGATCGCGTCCTGGGCGCGCCGG chr5B_563 TCGCCGTCACGCCCATGGTAGGGATGGGGATCGCGTCCTGGGCACGCCGG chr5A_616 TTGCCGTCACGCCCATGGTGGGGATGGGGATCGCCTCCTGGGCACGCCGG chr5B_1998 TCGCCGTCACGCCCATGGTGGGAATGGGGATCGCCTCCTGGGCACGCCGG SNPs -------------------------S-----------------S------ forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 AGCGTGCAGTGGCGCCTCATGGGCCTCCAGCACCACGACCCGTCCACCGA chr5D_1_TraesCS5D01G002400 AGCGTGCAGTGGCGCCTCATGGGCCTCCAGCACCACGACCCGTCCACCGA chr5B_563 AGCGTGCAGTGGCGCCTCATGGGCCTCCAGCACCACGACCCGTCCACCGA chr5A_616 AGCGTGCAGTGGCGCCTCATGGGCCTCCAACACCACGACCCCTCGACGGA chr5B_1998 AGCGTGCAGTGGCGCCTCATGGGCCTCCAGCACCACGACCCGTCCACAGA SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 GCTGCGCCTCGTCGCCGGCCTCCGCGGCCCGCAGGAAGTGCCCGCCCTCG chr5D_1_TraesCS5D01G002400 GCTGCGCCTCGTCGCCGGCCTCCGCGGCCCGCAGGAAGTGCCCGCCCTCG chr5B_563 GCTGCGCCTCGTCGCCGGCCTCCGCGGCCCGCAGGAAGTGCCGACCCTCG chr5A_616 GCTGCGCCTCGTCGCCGGCCTCCGCGGCCCGCAGGAAGTGCCGACGCTCG chr5B_1998 GCTGCGCCTCGTCGCCGGCCTCCGTGGCCCGCAGGAAGTGCCGACCCTCG SNPs ------------------------------------------SS------ forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------GCCCTCG forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 CCTTCCTCATGGAGTCGCTCCGGTGGGGCGCCGGCAACGGCGAGATCGCG chr5D_1_TraesCS5D01G002400 CCTTCCTCATGGAGTCGCTCCGGTGGGGCGCCGGCAACGGCGAGATCGCG chr5B_563 CGTTCCTCATGGAGTCGCTCCGGTGGGGCGCCGGCAACGGCGAGATCGCG chr5A_616 CGTTCCTCATGGAGTCGCTCCGGTGGGGCGCCGGCAACGGCGAGATCGCG chr5B_1998 CGTTCCTCATGGAGTCGCTCCGGTGGGGCGCCGGCAACGGCGAGATTGCG SNPs -S------------------------------------------------ forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 CCTTCCTCATG--------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 TGCTACGCCGTGGACATGGTGCAGCTGACGGACCAGACGGCGTCTTCGAT chr5D_1_TraesCS5D01G002400 TGCTACGCCGTGGACATGGTGCAGCTGACGGACCAGACGGCGTCTTCGAT chr5B_563 TGCTACGCCGTGGACATGGTGCAGCTGACGGACCAGACGGCGTCTTCAAT chr5A_616 TGCTACGCCGTTGACATGGTGCAGCTGACGGACCAGACGGCTTCTTCAAT chr5B_1998 TGCTACGCCGTGGACATGGTGCAGCTGACGGACCAGACGGCGTCTTCGAC SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 CGTGAAAAGCGGTGGGTTGGACGGCGTGACAGTGGTGGACGAGGAGGTGT chr5D_1_TraesCS5D01G002400 CGTGAAAAGCGGTGGGTTGGACGGCGTGACAGTGGTGGACGAGGAGGTGT chr5B_563 CGTGAAAAGCGTTGGGTTGGACGGCGTGACGGTAGTGGACGAGGAGGTGG chr5A_616 CGTGAAAAGCGGCGGGTTGGACGGCGTGACGGTGGTGGACGAGGAGGTGT chr5B_1998 CGTGAAAAGCGGTGGGTTGGACGGCGTGACAGTGGTGGACGAGGAGGTGT SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 CGGAGATGCGGAAGCTGATCGGCGAGGCGCTAGACGCGTACCAGGCGGAG chr5D_1_TraesCS5D01G002400 CGGAGATGCGGAAGCTGATCGGCGAGGCGCTAGACGCGTACCAGGCGGAG chr5B_563 CGGAGATGCGGAAGCTCATCGGCGAGGCGCTAGACGCGTACCAGGCGGAG chr5A_616 CGGAGATGCGGAAGCTCATCGGCGAGGCGCTAGACGCGTACCAGGCGGAG chr5B_1998 CGGAGATGCGGAAGCTGATCGGCGAGGCGCTAGACGCGTACCAGGCGGAG SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 TGCGGCGGCGAGGG---------CGGCAAGGTGAAGGTGCGCCGGCTGCT chr5D_1_TraesCS5D01G002400 TGCGGCGGCGAGGG---------CGGCAAGGTGAAGGTGCGCCGGCTGCT chr5B_563 TGCGGTGGCGTGGG---------CGGCAAGGTGAAGGTGCGCCGGCTGCT chr5A_616 TGCG---------GTGGCGAGGGCGGCAAGGTGAAGGTGCGCCGGCTGCT chr5B_1998 TGCG---------G---------CGGCAAGGTGAAGGTGCGCCGGCTGCT SNPs -----S----S--------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 GGCGCTGTCGTCGTTCCCGGACATGCACAGTGACCTGTGCATCTGCGCCG chr5D_1_TraesCS5D01G002400 GGCGCTGTCGTCGTTCCCGGACATGCACAGTGACCTGTGCATCTGCGCCG chr5B_563 GGCGCTGTCGTCATTCCCGGACATGCACAGCGACCTGTGCATCTGCGCCG chr5A_616 GGCGCTGTCGTCGTTCCCGGACATGCACAGTGACATGTGCATCTGCGCCG chr5B_1998 GGCGCTGTCGTCGTTCCCGGACATGCACAGTGACCTGTGCATCTGCGCCG SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 AGGACGCCATGGCAGCGCTCATCCTGGTGCCGTTCCACAAGGCACAGTGC chr5D_1_TraesCS5D01G002400 AGGACGCCATGGCAGCGCTCATCCTGGTGCCGTTCCACAAGGCACAGTGC chr5B_563 AGGACGCCATGGCGGCGCTCATCCTAGTGCCGTTCCACAAGACACAGTGC chr5A_616 AGGACGCCATGGCGGCGTTGATCCTAGTGCCGTTCCACAAGACACAGTGC chr5B_1998 AGGACGCCATGGCAGCGCTGATCCTAGTGCCGTTCCACAAGACACAGTGC SNPs -------------------------S---------------S-------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 CTGGACGGCACCATGGACGGCGGCCACTTCGGGTTCCGGCTGGTGAACCA chr5D_1_TraesCS5D01G002400 CTGGACGGCACCATGGACGGCGGCCACTTCGGGTTCCGGCTGGTGAACCA chr5B_563 CTGGACGGCACCATGGACGGCGGACACTTCGGGTTCCGGCTGGTGAACCA chr5A_616 CTGGACGGCACCATGGACGGCGGCCACTTCGGGTTCCGGCTCGTGAACCA chr5B_1998 CTGGACGGCACCATGGACGGCGGCCACTTCGGGTTTCGGCTGGTGAACCA SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 GAAGGTGCTACAGCTAGCGCCATGCTCGGTGGGGATCATCGTGGACCGCG chr5D_1_TraesCS5D01G002400 GAAGGTGCTACAGCTAGCGCCATGCTCGGTGGGGATCATCGTGGACCGCG chr5B_563 AAAGGTGCTGCAGCTAGCGCCATGCTCGGTGGGGATCATCGTGGACCGCG chr5A_616 AAAGGTGCTACAACTGGCGCCATGCTCGGTGGGGATCATCGTGGACCGCG chr5B_1998 GAAGGTGCTACAGCTAGCGCCATGCTCGGTGGGGATCATCGTGGACCGCG SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 GCCTCGGCAAGCAGCAGCGTCCAGATAGCACGGCGCAGGCTTCCGTGGCG chr5D_1_TraesCS5D01G002400 GCCTCGGCAAGCAGCAGCGTCCAGATAGCACGGCGCAGGCTTCCGTGGCG chr5B_563 GCCTCGGCAAGCAGCAGCGTCCAGACAGCACGGCGCAGGCGTCGGTGGTG chr5A_616 GCCTCGGCAAGCAGCATCGTCCAGACAGCACGGCGCAGGCGTCTGTGGCG chr5B_1998 GCCTCGGCAAGCAGCAGCGTCCAGATAGCACGGCGCAGGCGTCGGTTGTG SNPs ----------------------------------------S--S------ forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 GTGCTCTTCATCGGCGGCGCGGACGACCGGGAGGCGCTGACGCTGGCGTC chr5D_1_TraesCS5D01G002400 GTGCTCTTCATCGGCGGCGCGGACGACCGGGAGGCGCTGACGCTGGCGTC chr5B_563 GTGGTGTTCATCGGCGGCGCGGACGACCGGGAGGCGCTGACACTGGCGTC chr5A_616 GTGCTCTTCATCGGCGGCGCGGACGACCGGGAGGCGCTCACGCTGGCGTC chr5B_1998 GTGGTATTCATCGGCGGCGCGGACGACCGGGAGGCACTGACGCTGGCGTC SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 CTTCATGTGCAAGCAGCAGGCCTCGGTGCGGCTGACGGCGCTACGGGTGG chr5D_1_TraesCS5D01G002400 CTTCATGTGCAAGCAGCAGGCCTCGGTGCGGCTGACGGCGCTACGGGTGG chr5B_563 GTTCATGTGCAAGCAGCAGGCTTCGGTGCGGCTGACGGCGCTACGGGTGG chr5A_616 CTTCATGTGCAAGCAGCGGGCCTCGGTGCGGCTCACGGCGCTACGGGTGG chr5B_1998 GTTCATGTGCAAGCAACAGGCTTTGGTGCGGCTGACGGCGCTACGGGTGG SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 TGCAGAACGCGACGGCGCAGGCGCGGGCCAAGGCGCGGACGAGCCTCTTC chr5D_1_TraesCS5D01G002400 TGCAGAACGCGACGGCGCAGGCGCGGGCCAAGGCGCGGACGAGCCTCTTC chr5B_563 TGCAGAACGCGATGGCGCAGGCGCGGGCTAAGGCGCGTACGAGCCTCTTC chr5A_616 TGCAGAACGCGACGGCGCAGGCGCGGGCCAAGGCGCGCACGAGCCTCTTC chr5B_1998 TGCAGAACGCGATGGCGCAGGCGCGGGCTAAGGCGCGGACGAGTCTCTTC SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 GAGTCCAAGAGCAAGCGGCACATGCCTCT---AGCGGGGACTACGACGGG chr5D_1_TraesCS5D01G002400 GAGTCCAAGAGCAAGCGGCACATGCCTCT---AGCGGGGACTACGACGGG chr5B_563 GAGTCCAAGAGCAAGCGGCACATGCCTCTGGCGGCGGCGACGACGACGGG chr5A_616 GAGTCCAAGAGCAAGCGGCACATGCCTCT---GGCGGCGACGACGACCGG chr5B_1998 GAGTCCAAGAGCAAGCGGCATATGCCTAT---GGCGGCGACGACAACGGG SNPs --------------------------------S----S---S-------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 GCAGGAGGAGCTGCAGGCGCAGGCGGACGACAAGTTCTTCGCCGAGTTCT chr5D_1_TraesCS5D01G002400 GCAGGAGGAGCTGCAGGCGCAGGCGGACGACAAGTTCTTCGCCGAGTTCT chr5B_563 GCAGGAGGAGCTGCAGGCGCAGGCGGACGACAAGTTCTTCGCCGAGTTCT chr5A_616 GCAGGAGGAGCTGCAGGCGCGGGCGGACGACAAGTTCTTCGCCGAGTTCT chr5B_1998 GCAGGAGGAGCTGCAGGCGCAGGCGGACGACAAGTTCTTCGCCGAGTTCT SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 ACCGGAAGCACGTCGCCGGCAACAAGTCCGTCGGCTACCTGGAGAAGCAC chr5D_1_TraesCS5D01G002400 ACCGGAAGCACGTCGCCGGCAACAAGTCCGTCGGCTACCTGGAGAAGCAC chr5B_563 ACCGGAAGCACGTCGCCGGCAACAAGTCCGTCGGGTACCTGGAGAAGCAC chr5A_616 ACCGGAAGCACGTCGCCGGCAACAAGTCCGTCGGGTACATGGAGAAGCAC chr5B_1998 ACCGGAAGCACGTCGCCGGCAACAAGTCCGTCGGGTACCTCGAGAAGCAC SNPs ----------------------------------S--------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 ----------------------------------CTACCTGGAGAAGCAC forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 GTGGCGGACGGGGCGGAGCTGGTGGCGGTGCTGCGGGGGATGCAGGGGGA chr5D_1_TraesCS5D01G002400 GTGGCGGACGGGGCGGAGCTGGTGGCGGTGCTGCGGGGGATGCAGGGGGA chr5B_563 GTGGCGGACGGGGCGGAGCTGGTGGCGGTGCTGCGGGGAATGCAGGGGGA chr5A_616 GTGGCGGACGGGGCGGAGCTCGTGGCGGTGCTGCGGGGGATGCAGGGGGA chr5B_1998 GTGGCGGACGGGGCGGAGCTGGTGGCGGTGCTGCGGGGGATGCAGGGGGA SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 GTGG---------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 CTACCGGCTTTTCGTGGTGGGGAAGGGAAGGGACCGCAACTCGGTGCTCA chr5D_1_TraesCS5D01G002400 CTACCGGCTTTTCGTGGTGGGGAAGGGAAGGGACCGCAACTCGGTGCTCA chr5B_563 CTACCGGCTTTTCGTGGTGGGCAAGGGAAGGGACCGCAACTCGGTGCTCA chr5A_616 CTACCGGTTGTTCGTGGTGGGCCGAGGGAGGGACCGCAACTCGGTGCTCA chr5B_1998 CTACCGGCTTTTCGTGGTGGGGAAGGGAAGGGACCGCAACTCGGTGCTCA SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 CCGAGGGGTTGGAGGAGTGGGCAGAGTGCCTGGAGCTCGGGCCCGTCGGC chr5D_1_TraesCS5D01G002400 CCGAGGGGTTGGAGGAGTGGGCAGAGTGCCTGGAGCTCGGGCCCGTCGGC chr5B_563 CCGAGGGGCTGGATGAGTGGGCGGAGTGCCTGGAGCTCGGGCCCGTCGGC chr5A_616 CCGAGGGGCTGGAGGAGTGGGCCGAGTGCCTGGAGCTCGGCCCCGTCGGC chr5B_1998 CCGAGGGGTTGGAGGAGTGGGCAGAGTGCCTGGAGCTCGGGCTCGTCGGC SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 GACATCCTAGCCTCGTCGGACTTCTCCACCACCGCCTCCGTGCTCATCGT chr5D_1_TraesCS5D01G002400 GACATCCTAGCCTCGTCGGACTTCTCCACCACCGCCTCCGTGCTCATCGT chr5B_563 GACATCCTAGCCTCGTCGGACTTCTCGACGACGGCGTCCGTGCTCATCGT chr5A_616 GACATCCTCGCCTCCTCGGACTTCTCAACGACGGCGTCCGTGCTCATCGT chr5B_1998 GACATCCTAGCCTCGTCGGACTTCTCAACCACCGCCTCCGTGCTCATCGT SNPs --------------------------S----------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 GCAGCAGTACGACGCCAAGAAGCACTACAAGGTGATCGATGAGGAGTTCA chr5D_1_TraesCS5D01G002400 GCAGCAGTACGACGCCAAGAAGCACTACAAGGTGATCGATGAGGAGTTCA chr5B_563 GCAGCAGTACGACGCCAAGAAGCACTACAAGGTCATCGATGAGGAGTTCA chr5A_616 GCAGCAGTACGACGCCAAGAAGCACTACAAGGTAATCGATGAGGAGTTCA chr5B_1998 GCAGCAGTACGACGCCAAGAAGCACTACAAGGTGATCGATGAGGAGTTCA SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 TGCCCTTGTAA--------------------------------------- chr5D_1_TraesCS5D01G002400 TGCCCTTGTAATGCAAGCCATTCCCTTGTTTCAATTCGTTATTCCTCCGT chr5B_563 TGCCCTTGTAATGCAATCCATTTCCTTGTTTCGTTATTCCA--CCTCCAT chr5A_616 TGCCCTTGTAATGCAATCCATTCCCTTGTTTCGTTATCCCA--CCTCCGT chr5B_1998 TGCCCTTGTAATGCAAGCCATTTCCTTGTTTCGTTATTCCA--CCTCCGT SNPs --------------------------------SS-SSSSS-SS------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -----------------------------------TCGTTATTCCTCCGT input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 AGCCATTTAGTATGTAACAAAAATTTTATGAAGCAGTTGATCTGGACATA chr5B_563 AGTTATATTTCTGTA---ACAATTTCTACGAAGCAGCTGTACTGGATGTA chr5A_616 AGCCATATTCCTGTA---ACAATTTCTATCAAGCAGCTGTTCCGGATGTG chr5B_1998 AGCCATATTTCTCTA---ACAATTTT------------------------ SNPs ------S-SSSSSSSSSS-S--S-------------S--S------SS-- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 AGCCA--------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 C-----TGTTGT---ATAG--TAAGTGTACGTTTTACTGTGGA-----TA chr5B_563 T-----TATTCTTCCATAG--TAAGTGTACATTTTAATGTGGAATGGATA chr5A_616 TATTGTTGTTGT---ATAGTATAAGTGTACATTTTAATGTG--------- chr5B_1998 ---------------------TAAGTGTACATTTTACTGTGGA-----TA SNPs S-----------------------------S------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 GCCTTTTATTCTTCAA---------------------------------- chr5B_563 GCCTTTTACTCTTCAA---------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 GCTATTTACTACCGATTTTTTTATTAATAGTGTAAGGGAAACGTTTGGCT SNPs --------S----------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 -------------------------------------------------- chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 GCGCACCGGCCGAACGCTCGGCCGGTCGCGAGCGACCACGCGCCACCACG SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 -------------------------------------------------- chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 TACGTGCCACGCGGCCACATGGCCTGCACACATCCGTCCTTTTATATCTC SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 -------------------------------------------------- chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 AGCCACGCGTGTCTTATCCTTCCATCCCCTGCTCGCCTCTCTTCTCAGCA SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 -------------------------------------------------- chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 TCTCTCGCACATATCCATCCCCACTCATTTCTCTCCATGCGCCTGGCTTC SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 -------------------------------------------------- chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 GGCCAGCGCCGCGGTTTCTCCGGCAAGGCCCCCACCGGCGAGGCATCCCC SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 -------------------------------------------------- chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 TGCTCCTCTCTTCATCTCTCTTCACCTCTGCTCGTCGGCCCTCCCCTTCC SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 -------------------------------------------------- chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 TGCTCCCCGACGCCCCCGTGTGATGGACCACGGGTTGGCGCTGGACGGAG SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 -------------------------------------------------- chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 GAGGAAGCACGCCGGGGATTTGCATCTGGTGGACGGGAACAGCTGCAACC SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 -------------------------------------------------- chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 GGCCTGGCCGGGAGCTGCAACCGGTGGACAGAGGAGCTGCGATGGGTGGG SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 -------------------------------------------------- chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 TGACCACGACCACGGGCAGGCAACGGGGTGGATGGCCGTGCCCCGACAAG SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 -------------------------------------------------- chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 TGCTACAACCATGGCAACTAGATGTTCGAACCAGCGCCTAATTGTGCTAC SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 -------------------------------------------------- chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 TACAGGCGTTTTGATTTGATGGAACCATCATCGTCCAATTTTCAGTTTTT SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 ----------------------------AACGACCAAAATAATTTTTTTT chr5B_563 ----------------------------AA-------------------- chr5A_616 -------------------------------------------------- chr5B_1998 TGCTACCACCGTAATATGTATTTGCTGGAACCATCAACATTTTTTTTGCT SNPs -------------------------------S-S---S--SS-----SS- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 TCCCTTGTTAATTATGTCCGAAGCCTACTATCTCTTTTGAGGGACCAAAG chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 ACCATCATTTTTTGATTTTGTTGGAATCATGCCCAATTTGCTCTTTTTGC SNPs S--S-SS--SS--SSS-SS-SS-SSSS-SSS-S-SS--SSSSSSSSSSSS forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 TCATCGTCAATCTCCTGTTGGTTAATTATGTTACGTCATGACTATTAATG chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 TACCATCGTAATACTTTTTTGCTGGAAGTTTTGTTGGTACACCGC----- SNPs -SSSSSSSS-SSS-S-S--S-S-SSSSS-S--SSSSSSSS--SSSSSSSS forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 AGAGCCAGGGTCAGGCGCTATCAAAGGTTTGCATTTATTTGCCAGAACCT chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 ---------------------CAAAATTTTGCATTTTTGCTACCACATGC SNPs SSSSSSSSSSSSSSSSSSSSS----SS---------S-SSSS-SSS-SSS forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 GTCTTCTCGCACGGTCAGTTATATGTTGCTATGTCAAGAGTGACTTCTCG chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 CTTTTGAATTGCTGGAATGAGCTTCATTTTTTGCTACAACCGGCA----- SNPs S-S--SSSSSS-S-SS-SSSSSS-SS-SS-S--SS-SS-SS-S-SSSSSS forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 CGCTAGTCTTAAGTTTCGAAGGTTCGTCAAGCTACAGCACCTGGCGCAGT chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 TAGCTGGGAACCTGACAAGCGCCGGGATATGGACAGGGTACGGATTCATC chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 TCCACACCACGCAACGACTACGTCCTGGTAAGACAACACACAATTGCATC chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 CCTTCTCTACTTCTCCTAGCTACAGTAGCTGGTAGGCTTGCTGAAGATCG chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 TCTCTTTGTTTTTTTTTCGAAACGGAGGCAAAAGATTTGCCTCATCCATT chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 --TCTTTGATTTTTTTTCTTTCAACAAAGTCCATTTTTCCAATTTTTGAT SNPs SS------S---------SSSSSSS-SSSSSS-SS---S-SSSS-SSSS- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 AATTAAGAAGAAGTTTAGAGTTGCTTTTACAACAGAAAAGCAAGATAAGA chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 ACCAGCGTTTTCAAGTTTGCTGGAAGCAGCACATTTTTTTTGCTACAACC SNPs -SSSSS-SSSSSSSS-SSSS-S-SSSSSS--SSSSSSSSSSSSS-S--SS forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 TACATAGATTCTACTCTCGCGGCATGATGTTTCCCAAGTGCTTCGCGCCG chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 GTTGTTTTGGATGCGAACCACGACGTCCTCCCCATTGTCGACGGCGGACG SNPs SSSS-SSSSSS-S-SSS-SSS-SSSSSSSSSS-SSSSSS-SSSSSS-S-- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 GCGGCGATCCAAAGCCTAGCCTCATTCTTGATGTTACCAAAAATGATGGA chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 CTGGGGGGAAGGAGCGAAGGCGTCCCATTGGAGCCGGGCGATGACCGGCG SNPs SS--S-SSSSSS---SS--S-SSSSSS---SS-SSSSSSS-SSSSSS-SS forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 TGGCAGCGTCGATTTTTGTTGGAACACCCTAGCATTTCGCTCGCACCAAA chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 GTGAGGGGAAGGCGCCTAACTGCGCTGTAGGGGGAGGGGTCGTGCGAGGC SNPs SS-SS-S-SS-SSSSS-SSSS-SS-SSSSSS-SSSSSS-SSSSSSSSSSS forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 TATTCCAACAAGACAACATGGTGAGGGTTGCCATTGCCTTCCGATTTGCC chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 GCGACCTGCTTCGAGGTCTGCAGCCAGCGGGGCGGTCGGCGGGGCGGGAA SNPs SSSS--SS-SSSSSSSSS--SS-SSS-SS-SSSSSS-SSSSS-SSSS-SS forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 ACGTTCTTCTCGGACATGTTGATCCACCAATTCTTGATGGAGCGCTCGTC chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 ACTACTCGCAGAGAGGGATCGCGGTGGTGGAAGACGAAGTCAACGAAGGG SNPs --SSSSSS-SSS--SSSS-S-SSSSSSSSSSSSSS--S-SSSSSSSS-SS forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 ATTCCAGCGATAAGTGTCCATGCCGTCTAGCCCAAGCCAATCCTTGATCA chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 CGTGGGCCAGCTGGCAAAACAGACGGTCGATGACGCGCTAATCGTGCGGC SNPs SS-SSSS-SSSSS-SSSSSSS-S--SSSSSSSSSSSS-S-SS-S--SSSS forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 TGCCCCAAAGCCTCCTAGTGAAACGACACTTGAAGAAG------------ chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 TGCCGTGCGACCGGCCCAAATTTGGGCCGGCGCACCGGCGCCTATCAGTG SNPs ----SSSSSS--SS-SSSSSSSSS-S-SSSS-S-SSS------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 -------------------------------------------------- chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 CCCATAGTGTAAATGATAGTTCTGTAATTTTGAAACTGGTAAAGGGCCCA SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 -------------------------------------------------- chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 TGGAAATTGTGAAAATAGGAAGGACGTCAGGGGTGGACTCTATTGCTAAT SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 -------------------------------------------------- chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 TGCATCCAACTCGGACGGCGTCCAGTCATGCGGTTTGTTTAGTGCTCTGA SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 -------------------------------------------------- chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 TTAGGCTCAATCCAGTCGTTTTCCTCTAATAGATGGATGTTTCATGACCT SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 -------------------------------------------------- chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 ATAAACCCTAATGCGCCTGCAGCCGTCCCTTCTTACCTCGTTGGGTGGTA SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 -------------------------------------------------- chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 AGCAAACTCTAGCAGGGACATCACCAATCATCACTGGAGGCAGGAGCAAC SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 -------------------------------------------------- chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 ATCGTCTCACTAGCCACTTGTCAATAGAATCACTTGCTCATCATTAGGAT SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 -------------------------------------------------- chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 CAACCACTCAATGTATGATTGGTGTCGGTGTGGAACGCCGGTCTATGGGG SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 -------------------------------------------------- chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 TCAACATGGCCCTTTGTGATTCGGCGAGGGGAGAGCACTAGACGCAAAGA SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 -------------------------------------------------- chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 GCGGGATGAGCAGAGAGCACCACGGTCGTTTACCCAGGTTCGGGCCACCT SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 -------------------------------------------------- chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 TTTAGGTGTAATACCCCACTCCTGCTTGATTTTGTTGGGAATGTGGGAGC SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 -------------------------------------------------- chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 ACAAGTACAAGGAGAGCCCTTCCCCCGGCAAGGCATGGAGGGAGGCAACT SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 -------------------------------------------------- chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 ACACGAGCTTTTTGTGTGAGGCCTAACCGGGTCAAACTCTGGCAGTCTTT SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 -------------------------------------------------- chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 TTTGGCCGAGGACCGAAGAGTCACCGCGGGCGGCCAGTTAATGCTGGACA SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 -------------------------------------------------- chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 TATCGTAGCCCAAGACGGTTTTCATTGGCACATCCCTTCAATAAAGGGAT SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 -------------------------------------------------- chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 CGTGCTCCAGATTCTCAGTGTCAGTAACCGGTGGTTTTACTGTGACATGG SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 -------------------------------------------------- chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 GGGTAACCCTTGATCTTTTTATTGACCTATAAAAGGGAGGGGAGGGGGTA SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 -------------------------------------------------- chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 AATTGACTCCATTCACGCCTCCATTCCTTATCCACATCGCCTCCTAGCTT SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 -------------------------------------------------- chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 CGTTAGCAAGATCAACTTTGTGCTCTCCTCCTTCGTGCTGCCGCTCTACG SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 -------------------------------------------------- chr5D_1_TraesCS5D01G002400 -------------------------------------------------- chr5B_563 -------------------------------------------------- chr5A_616 -------------------------------------------------- chr5B_1998 TCGCCCATGTCTGCCTCTCGCTCCGGCAGACCACGGACGACATCGAGGTC SNPs -------------------------------------------------- forward_345 -------------------------------------------------- reverse_1267 -------------------------------------------------- forward_1259 -------------------------------------------------- reverse_2544 -------------------------------------------------- forward_1336 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3636 -------------------------------------------------- input_sequence_30697 --------- chr5D_1_TraesCS5D01G002400 --------- chr5B_563 --------- chr5A_616 --------- chr5B_1998 GCGGACCTC SNPs --------- forward_345 --------- reverse_1267 --------- forward_1259 --------- reverse_2544 --------- forward_1336 --------- reverse_3335 --------- forward_1689 --------- reverse_3636 ---------