>input_sequence_30442
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-----------------------------------------------------------------------ATGGTCCGC
GAGTTGCTGGCCGTGCTGGTGCGCGCGGCGCTGCAGTGGGCGCTGGCGACGCTGCTCCTCGCCAACGGCGCCGCCTTCTG
CCTCATCGCCGCCGCGGCCTCCTCGCTCCGCCTCGGCCCGCCATGCCTCCTCTGCGCACGCGTCCACCGCCTGCTCTGCT
CCGACTGCGGCCAAG---------------AAGAACGA---GACGCCTTCCGCCGCCTGCTCTGCGACGCTCACGTCGCC
GCCATCGCGCGCTTAGGCGCACAAGAAGCAGAGCAGCCGGCGTGCTCTCCTTCTGATCACGTCGACGCAGGGACAAAATA
TG---------------GAGGTAATCAGTCCATCGATTTTCTTATTCTCTTCGAACTAGCAGCGTGGCGTGGC-----AC
CAATGGTCTGTCTCTGCCGGAATTGCTAGAGAATACTAGTATCACCAATTAGCAACCACAAAATGATTCTGCATAGCAA-
------CATGAATTTCGGTATGTTTATCTGGTCGAGTTGTTGGTGA---TACCACCAAAAAATGGTTGCGGTGTAAACAG
ACACACCTTTGATAGGATAAGAAAGTA-TACGAGTTCAACAAGACAGCAAT---GCATCCATCTGATAG--ATATGATTC
GGTGATGGACTGCATGAGAACAGTTTAGAGATGTCAATGTCATTCTCAGGAATCAGAAGATGGGAATGCTTCTCA-----
--------------------------------------------------------------------------------
---------------------------------------------------ATGGGTTTCAACTGCCCAAAATTGAGTTA
CAGGGAACCTGAACGCAGTTTCGGCAATTGCGCCCTTCAGTAGTTCTCAATGAAAAAGGTGGTCCACCTGCCAATTTGGC
AATTCACTAGTTCAGTTAATTTTTATTTTTTTGAAAGATCCAACATGCTGCCGGCATTCATTCATTGATTTAGTAGAAGA
GAGCGGAAAACAGGGTCGGTCGATCAAGTGATCGCATGAATGATATTGAAAACAGAAAAGAG-----------AAGGAGC
CCCTGGGCTCAAGCTGTTCTAACTCCTCACA-AAATTTTCCTTCTCCCCGAATGAGCAGCAGTTCCTTTCTTGCCGAATT
TCTCAGTTGATTAGGATAATCATGGATTTTGTAGCCCATCTTGCCGCGCCAGGAGCCGTCTGCTGA---ATGATG-----
--CTGTGAACTGCATCGGCAGGGTTGCCGAATTGCACCTCAGTGTTGTTGTTGAACAAT------TCCAAGTGCAGTAAA
CACAGGAATGAAGCTGGAACCGGCGAAACAACAATTTGTGCGGTTTTGCTGTTTCTCGGCTGCCTGAAAATCCTGATTGT
GCTAGTGATTATTGCGGGAAGAAGAGGTAGGC-GCAGCATCCCGGCGAGGCCGCGCCATGACCCATGAGC----------
--------------------------GGAGGTTTGACATGTGCTAGGAAAACGGTCAAGGAAGAAGTC-GACGATCTGGC
CGTTCATTTGTGATCTAACGGTTCAGATTATTCCAAATCGACTGACCCTATCATTTTTTCCAGTCAACTGAAGGATAGGT
GAACCCTAATTTGTGATAATT-TTTTTTAAGCTTTTGGCCTTTCCCTACTAGCAA--TTTACTACTTCAAATGCACATTA
GCGAATCCAACTAAAAAATTGTACATT---AGCGAATGAAAATGCTCTTTGAATTCTTCGTGTTGACAACCGATAGTTGA
CGTTGTTCACAGGTCTGGAGTCTCACCGCGTCGTCTCCATCGGCAGCGAGATCTGCGAGCAAGATCGTGGCGCCGACGAT
GACCACCCTCGTGCCGCTGCCACCAACCTCAGCACCCTCGGAAGAACGTCGAGCATGGACAGCGGCGAAGGCCCGTACGT
GTCCCTGTTCGAGCTCGCTCCCCTCGTCGCCCTCCCGGAAGCCAACCCGCCGCCGGATTACGATGCCAAAGAAGCACCTC
ACGGTCACGGTCACAGGACGACGACGAGGCCGGAGCACGACGAGAGAGCGTCCCCGAGCGACGCGGCAGGCGGCGAGCCG
GCGCTGACGGTGAGCGGCCTCGTCGCCGCCCTCCGCGCGCAGCGGAGGGAGCTGGAGGCGGCGCGCGCGGAGCTGCACGG
CGAGCGGCGCGCTAGGGCGGAGCTGGAGGAGCAGGGCGAGCTGGACCGGGAGGCGGCGCGGGTGGCCATGCAGCTCGTCC
ACGAGGCGGAGACGGAGAAGCACGAGCTGCAGCGGCAGCTCGACGCGCTCAGGGTCAGGGCCCAGCTCCACGACTACGAG
GCCGCCGG------CTTGGACGCGGCGGACTACTCTG---CTCCGGTCAGCCGGCTCGGCCGCCGGCTGAGCCGCGACGG
CGGCAGTGAGTCGATGGGCCTGGAAGTGGAAGACGAGGCGGGCTGGAGCGGGAACAAGAACTACCAGTCGCTGGTGGACT
TCCTGCCGGGCTCGGTCTACTCCTCGTCGCCGGACCTGGCCAACCTGCTGAGGCTCTACACGGAAGGCAATGGCAATGGA
ACTCGTCGGCCGAAAGAGGGTGACATCACCGAGGAGGAGGAGGAGGAGGAGGAG------GTCGTCGTCGCCGTCACGGC
CGCAGCTGTCTCTGGTTTCGACGGCGGGGACGGTGAGGAGGCCACTAGCATGGCTGCTGCTGCTGGTGCTTC--------
-TTTGGCGGAAAGCGGTGGCGACCACGTCCGAGCAGATCTTGCACAAGACGAAGCAGCTGTAATGCGTGCATGA------
--------------------------------------------------------------------------------
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--------------------------------------------
>chr3D_1_TraesCS3D01G060800
ATCCCAATCAGGCGGCCTTCATGCGCGATCAGGTCGGCATCGACCTGGACAGCTTCTCCCTCGACCACGAGTTCCCGGAC
GACTACGGGCTAGAGGAAGATCCACGAGTGCGACATCGACGATGGCGTGGTCGAACTGAAGTCCCACCCTTTTTGTGTGC
TGGCATGTGTGCCGGCCGGCTGGCGAGTGCGCTAGCATGAACTGTGGTGATATTTTCTGAAGCCGGCATTGTATGCCGCC
GCTGGCATGGTGCCGGCATGAGACATGGCCGCTGGCACGATCGGCCGCGGGCCTTTTTTATTTAAAAGTTGAATGTGGAC
ATGAAATGGGTCGGCGCGTTGAATCTGCCGACCCAAATGCAAAACTGGGCGGGCGCCGGGCGGGCGGCCGACCTAAACGG
ACAAAATGCGGACAAATGCGCCGTCCGTTTGGGTCGGCCGGTTGGAGTTGCTCTTAGGTGTCGGTGAGAGGAGAAAACTC
GGTT------TTCTTCTTCTTCTTCTCTAACCGGTGATTCTAGAGGATAGCTCTTTAACTAGTGATCCCATTGGCGCTTT
CCCCGGATAAACGTCGACATTCTCGTCGTGCAAAGA-------CGTCATTTTGCCGAAAGGAACCGCAATTTGGACGGAG
TGGTAGGAATCAAAGAGAAAGCATAATACTACTTACTTTGATGAGAGTGAGGCAGAGTAGACGACCCATGACGTCTCTCC
CCCTCCAACTCCGCAACCTCTGCTCTCAAAAGTGATCTCTGACCCCAATCATTCTATCATA---CCCAATTTTATTATCT
CTCCAACTCATAGTGGGGCTCCATT-TTGCAAAGTTGACAGCTTCCCTTGGCCTCCA----------ATGGAGCCTATCA
CCCCGTCCACCTAACCCGCCATTGTCTCTTGCCCCTCCCTTTCCTCTGCCTCCCGCCTCCAGCTCATCGGCATCCTCCTC
TGTTTTCCGGATTGGTCTA----CAGAGCTCCCATGATTCTTCCTCTGCTGAGTTTTCGGTGGGGAGGGTGATGGTCCGC
GAGTTGCTGGCCGTGCTGGTGCGCGCGGCGCTGCAGTGGGCGCTGGCGACGCTGCTCCTCGCCAACGGCGCCGCCTTCTG
CCTCATCGCCGCCGCGGCCTCCTCGCTCCGCCTCGGCCCGCCATGCCTCCTCTGCGCACGCGTCCACCGCCTGCTCTGCT
CCGACTGCGGCCAAG---------------AAGAACGA---GACGCCTTCCGCCGCCTGCTCTGCGACGCTCACGTCGCC
GCCATCGCGCGCTTAGGCGCACAAGAAGCAGAGCAGCCGGCGTGCTCTCCTTCTGATCACGTCGACGCAGGGACAAAATA
TG---------------GAGGTAATCAGTCCATCGATTTTCTTATTCTCTTCGAACTAGCAGCGTGGCGTGGC-----AC
CAATGGTCTGTCTCTGCCGGAATTGCTAGAGAATACTAGTATCACCAATTAGCAACCACAAAATGATTCTGCATAGCAA-
------CATGAATTTCGGTATGTTTATCTGGTCGAGTTGTTGGTGA---TACCACCAAAAAATGGTTGCGGTGTAAACAG
ACACACCTTTGATAGGATAAGAAAGTA-TACGAGTTCAACAAGACAGCAAT---GCATCCATCTGATAG--ATATGATTC
GGTGATGGACTGCATGAGAACAGTTTAGAGATGTCAATGTCATTCTCAGGAATCAGAAGATGGGAATGCTTCTCA-----
--------------------------------------------------------------------------------
---------------------------------------------------ATGGGTTTCAACTGCCCAAAATTGAGTTA
CAGGGAACCTGAACGCAGTTTCGGCAATTGCGCCCTTCAGTAGTTCTCAATGAAAAAGGTGGTCCACCTGCCAATTTGGC
AATTCACTAGTTCAGTTAATTTTTATTTTTTTGAAAGATCCAACATGCTGCCGGCATTCATTCATTGATTTAGTAGAAGA
GAGCGGAAAACAGGGTCGGTCGATCAAGTGATCGCATGAATGATATTGAAAACAGAAAAGAG-----------AAGGAGC
CCCTGGGCTCAAGCTGTTCTAACTCCTCACA-AAATTTTCCTTCTCCCCGAATGAGCAGCAGTTCCTTTCTTGCCGAATT
TCTCAGTTGATTAGGATAATCATGGATTTTGTAGCCCATCTTGCCGCGCCAGGAGCCGTCTGCTGA---ATGATG-----
--CTGTGAACTGCATCGGCAGGGTTGCCGAATTGCACCTCAGTGTTGTTGTTGAACAAT------TCCAAGTGCAGTAAA
CACAGGAATGAAGCTGGAACCGGCGAAACAACAATTTGTGCGGTTTTGCTGTTTCTCGGCTGCCTGAAAATCCTGATTGT
GCTAGTGATTATTGCGGGAAGAAGAGGTAGGC-GCAGCATCCCGGCGAGGCCGCGCCATGACCCATGAGC----------
--------------------------GGAGGTTTGACATGTGCTAGGAAAACGGTCAAGGAAGAAGTC-GACGATCTGGC
CGTTCATTTGTGATCTAACGGTTCAGATTATTCCAAATCGACTGACCCTATCATTTTTTCCAGTCAACTGAAGGATAGGT
GAACCCTAATTTGTGATAATT-TTTTTTAAGCTTTTGGCCTTTCCCTACTAGCAA--TTTACTACTTCAAATGCACATTA
GCGAATCCAACTAAAAAATTGTACATT---AGCGAATGAAAATGCTCTTTGAATTCTTCGTGTTGACAACCGATAGTTGA
CGTTGTTCACAGGTCTGGAGTCTCACCGCGTCGTCTCCATCGGCAGCGAGATCTGCGAGCAAGATCGTGGCGCCGACGAT
GACCACCCTCGTGCCGCTGCCACCAACCTCAGCACCCTCGGAAGAACGTCGAGCATGGACAGCGGCGAAGGCCCGTACGT
GTCCCTGTTCGAGCTCGCTCCCCTCGTCGCCCTCCCGGAAGCCAACCCGCCGCCGGATTACGATGCCAAAGAAGCACCTC
ACGGTCACGGTCACAGGACGACGACGAGGCCGGAGCACGACGAGAGAGCGTCCCCGAGCGACGCGGCAGGCGGCGAGCCG
GCGCTGACGGTGAGCGGCCTCGTCGCCGCCCTCCGCGCGCAGCGGAGGGAGCTGGAGGCGGCGCGCGCGGAGCTGCACGG
CGAGCGGCGCGCTAGGGCGGAGCTGGAGGAGCAGGGCGAGCTGGACCGGGAGGCGGCGCGGGTGGCCATGCAGCTCGTCC
ACGAGGCGGAGACGGAGAAGCACGAGCTGCAGCGGCAGCTCGACGCGCTCAGGGTCAGGGCCCAGCTCCACGACTACGAG
GCCGCCGG------CTTGGACGCGGCGGACTACTCTG---CTCCGGTCAGCCGGCTCGGCCGCCGGCTGAGCCGCGACGG
CGGCAGTGAGTCGATGGGCCTGGAAGTGGAAGACGAGGCGGGCTGGAGCGGGAACAAGAACTACCAGTCGCTGGTGGACT
TCCTGCCGGGCTCGGTCTACTCCTCGTCGCCGGACCTGGCCAACCTGCTGAGGCTCTACACGGAAGGCAATGGCAATGGA
ACTCGTCGGCCGAAAGAGGGTGACATCACCGAGGAGGAGGAGGAGGAGGAGGAG------GTCGTCGTCGCCGTCACGGC
CGCAGCTGTCTCTGGTTTCGACGGCGGGGACGGTGAGGAGGCCACTAGCATGGCTGCTGCTGCTGGTGCTTC--------
-TTTGGCGGAAAGCGGTGGCGACCACGTCCGAGCAGATCTTGCACAAGACGAAGCAGCTGTAATGCGTGCATGATGTATC
GCAT-----CACCGTGATTGATATGTTTTCTATTTAACCGCCATTCTTTTTATACTATTTGTTGCACGGAGCTTCGTGTA
TACAATGGTCC-----TTGGTAATTTCATCGAACACCTTGCGTGCGTCTGCTGTCCGGCCGGAGTCGGGCAGGTGCCGCT
ACATGATTCCCAGCCTTGCAGATGCTCGAGGTTGTCGCTCGGCTCGGTGCCGCTCGTTGTATTCCACACAATGGAACCAA
ATGGAATATACAAATTGCTTTTTTAGCTAGCACCATTTCATCACATGTTCACAAGTGGCACATTTCGAATTCTCTATATT
GACCGTCTAGAATTCATCTTGGTCAAAATTCATCTTCTCTTCATCAACATATCGGGTCACACCTTGAACCTATTATTTAC
TTGTCCCATTATCACCAAATTGGGCAAGCTTTAAGCATATCTTCTCTCGGGATGCTTATCTTGAACATGCACATGCCTAT
CTTGATGACCATCTTCACTTGATATCATCCTCACATGACCTATATGAAAACTTCATTGTGATGCAAGCCCCATGAGTATC
ACTCGATAATACTACGCCTACGAAGACTAACGTAAACTTTTACGTAACTTTCCATCTATACTCCTCTCCCCCTATTTTAA
GTGGGGTGGAGCCCGCCTTCTCTCTAATCCTAATCAAAACTTGCCAGCTGTGTAATTACGTAAGGATTACGATTAAACCA
TTCGTAGGTCTAGCATTACTCAGTATCACTTAACTCGCAAAACCGTACCAAAGCACACAAGACACAGGTCAGCTCACAAA
GGGCAATTCACAATTACTCACCATACCACTAGATTACACGCAGTATATCATTGTGGGAAGACCATATAGAAGATAGTCCA
CATGCTTCCTCTTCCCAACTCAATCAAATGCATTCAACATGGCCTCAACCCACGGGGCCCTATCAGTTTGGGCCAAATGT
CATGCATAGTCCATATATGTAATTGTTGGCAGGACAACTCCTAC
>chr3A_455
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------TAGGTGCCGGTTAGAGGAGAAAACCC
GGTTTTCTTCTTCTTCTTCTTCTTCTCTAACCGGTGATACTAGAGGATAGCTCTTGAACTAGTGATCCCATCGGTGATTT
-CCCGATGAAACGTCGACATTCTCGTCGTGGAAAGAGTAGAGACGTCCTTTTACCGAAAGGAACCGCAATTTGGACGGAG
CGGT----------GAGAAAGC---ATAATACTTACTTTGATGAGAGTGAGGCGGAGCAGACCACCCATGACATCTCCCT
CCCTCCAACTCCGCAACCTCTGCCCTCAAAAGTGATCTCTAACCCCAATCATTCTATCATAGTACCCAATTTTATTATCT
CTCCAACTCATAGTGGGGCTCCATTCTTGCAAAGTTGACAGCTTCTCCTTCTCCTGGCCACCG----ATGGAGCCGATCA
CCCCGTCCACCTAACCCGCCATTGTCGTCTCCTTGCCACTTTCCTCTGCCTCCCGACTCCAGCTCACCGGCATCCTCCTC
TGTT-TCTGGATTCATCCATCCACAAAGCTCCGATGAATCTTT------------------------GGTGATGGTCCGC
GAGTTGCTGGCCGTGCTGGTGCGCGCGGCGCTGCAGTGGGCGCTGGCGTCGCTGCTCCTCGCCAACGGCGCCGCCTTCTG
CCTCATCGCCGCCGCGGCCTCGTCGCTCCGGCTCGGCCCGCCCTGCCTCCTCTGCGCACGCGTTCACCGCCTGCTCTGCT
CCTCCTCCTCCCCTGGCGCCGGTGCCAGCCAAGAACAA---GACGCCTTCCGCCGCCTGCTCTGCGGCGCTCACATCGCC
GCCATCGCGGGCTTAGGCGCAGAAGAAACAGAGCATCAAGCGTGCTCTGCTTCTCATGGCGTCGACAGAGGGACCAAATA
TGATTCAGATAAACCTCGAGGTAACCAGTCTATCGATTG-CTTATTTTCTGGGAACTAGCAGCGTGGCGTGGT-----AC
CAATGGTCTGTCTCCGCAGGAATTGCTAGAGAATACGTGTGCCACCAATTAGCAATCACAAAATCACTCTGAATAGCATA
TACCACCATGAATTTGTTTATGTTTATCTGGTCGAGTTGTTGGTGATGATACCACCAAGATTAC--TGCGCTGGAAACAG
ACACGCCTTTGATAGGATAAGAAAGGA-TGCGAGTTCTACAAGACAGCAAT---GCATCCATTCGCTAAATATAGGATTC
GGTGATGGACTGCATGAGAACAGTTTAGAGACGCCATTCC------CATGAATCAGAAGATGGGAATGCTTTTCA-----
--------------------------------------------------------------------------------
---------------------------------------------------ATTGGTTTCAGCTGCCCAAAATTGAGTTG
CAAGGAACCTGAACCCAGTTT-GGCAATTGCGCACTTCAGTAGTTCTGAATGAAAAAAGTTGCCCACCTGCGAGTTCAGT
G-------------------TTTTTCTTTTTCGAAAGATCCAGCATGCTGCCGG----CATTCATTGATTTAGTAGAAGA
GAGCGGAAAACAGGGTG----GATCAAGTGATCGCATGAATGATACTCAGGCATTTGGAGTAGAGGAAACAGAAAAGAGC
CCCTGGGCTCAATCTATTCTAACTCCTCTCAGAAATTTCCCTTCTCCCCGAATGTGCAGCAGTTCGTTTCTTGACAAATT
TCTCAGGTGATTAGGATAATCATGGTTTTTATAGCCCATCTTGCCGCGCCGGGAGCCGTCTCCTGATGAATGATG-----
--CTGTGAACTGCATCGGCAGGGTTGCCAAATTGCAGTTCAATGTTGTTGTTGAACAATTCCATTTCCAACTGCAGTAAA
CACAGGAATGAAGCTAGAATCGGCAAAACCACAATTTGCGCGCTTTTGCTATGTTTCGACTGTCTGGAAATCCTAACTAA
GCTAGTGATTATTGCGGGAAGAAGAGGTAGGCCGCAGCATCCCGGCGAGGCCGCGCCATGA-------GC----------
--------------------------GGAGGTTTGACATGCGCCGTTTAGTTTC--------------------------
-----------GATCTAACGGTTCAGATTATTCCACATCGACTGACCCTAACATTTTTCCCAGTCAACTGAAGAATAGGT
GGACCCTAATTTGTGATAAATATTCTTTAAGCTTCTGGCTTTTTCCTACTAGTAG--TCTATTACTTCAAATGTACATTA
GCGAATCCAACTAAAAAAATGTACATCATCAGCGAATGAAAACGGTCTCCGAATTCTTCGTGTTGACAACTGATAGTTGA
CATTGTTCACAGGTCTAGAATCTCACCGGGTCGTCTCCATCGGCAGCGAGATCTGCGAGCAAGATCGTGGCGGCGACGAT
GACCAACCCCG------CGCCACCAACCTCAGCGCCCTCGGAAGAACGTCGAGCACCGACAGCGGCGAAGGCCCATACGT
GTCCCTGTTCGAGCTCGCTCCCCTCGTCGCCCTCCCGGAAGACACCCCGGTCACCAGA----------------------
-----------CACGG---GACGACGAAGCCGGAGCACGG---GAGCGCGCCCTCGAGCGCCGCGGCAGGCGGCGAGCAG
GCGCTGACGGTGAGCGGCCTCGTCGCCGCCCTCCGCGCGCAGCGGAGGGAGCTGGAGGCGGCGCGCGCGGAGCTGCACGG
CGAGCGGCGCGCCAGGGCGGAGCTGGAGGAGCAGGGCGAGCTGGACCGGGAGGCGGCGCGGGTGGCCATGCAGCTCGTGC
ACGAGACGGAGACGGAGAAGCACGAGCTGCAGCGGCAGCTCGACGCGTTCAGGGTCAGGGCCCAGCTCCACGGCCGCGAG
GCCGCCGCCGCCTCCTTGGACGCGGACTACTCTGCTTCTGCTCCGGCCAACCGGCTCGGCCGCCGGCTGAGCCGCGACGG
TGACGGTGAACTGATGGAGC------AGGAAGACGAGGCGGGCTGGGGCGGGAACAAGAACTACCAGTCGCTGGTGGACT
TCCTGCCGGGCTCGGTCTACTCCTCGTCGCCGGACCTGGCCAACCTGCTGAGGCTCTACACGGAAGGCAATGGCAATGGC
GCTCGTCGGCCGAAAGAGGGTGGTATCACCGAGGAGGAGGA---------GGAG------ATCGTCGTCGCCGTCACGGC
CACATCTGTTTCCGGTTTCGACGGCCGGGACGGTGAGGAGGCCACTAGCGTTGCTGCTTCT-------------------
--TTGCCAGAAAGTGGTGGCGACCACGTCCGAGCAGATCTTGCACAGGACGAAGCAGCCGTAATGCGTGCATGATGTGTC
GCATTTTACCACCGTGATTGATTTGTTTTTCATTTAACTGCCATTCTTTTTATATTATTTATTGTATGTACAGTGCTTTG
AATTGACTGAAGTCTTTTGGTCATTTCATCGAACACCTT-----------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------
>chr3B_485
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------TTCTTCTTCTTCTTCTCTAACGGGTGGTTCTAGAGGATAGCTCTTTAACTAGTGATCCCGTTGGTGCTTT
-CCCGGATAAACGTCGACATTCTCGTCGTGTAAAGA-------CGTCATTTTGCCGAAAGGAACACCGATTTGGACGGAG
TGGTAGGAATCAAAGAGAAAGC---ACAATACTTTCTTTGATGAGAGTGAGGCAGAGTAGACGACCCATGAAGTCTCTCC
CCCTCCAACTCCGCAACCTCTGCTCTCGAAAGTGATCTCTAACCCCAATCATTCAATCAC---ACCCAATTTGATTATCT
CTCCAACTCATAGTGGGGCTCCATTCTTGCAAAGTTGACAGCTTCTCCTTCTCTTGGCCACCGCGCGATGGAGCCCATCA
CCCCGTCCACCTAACCCGCCATTGTCGTCTCCTTGCCACTTTCCTCTGCCTCCGGCCTCCAGCTCATCGGCATCTTCCTC
TGTC-TCTGGATTGATCCA----CGGAGCTTCCATGATTCTTT------------------------GGTGATGGTCCGC
GAGCTCCTGGCCGTGCTGGTGCGCGCGGCGCTGCAGTGGGCGCTGGCGTCGCTGCTCCTCGCCAACGGCGCCGCCTTCTG
CCTCATCGCCGCCGCGGCCTCCTCGCTCCGCCTCGGCCCGCCCTGCCTCCTCTGCGCTCGCGTCCACCGCCTGCTCTGCC
CCTCCTCCTCTGGCGACGCCGGTTGCAGCCAAGAAGAAGACGACGCCTTCCGCCGCCTGCTCTGCGACGCTCACGTCGCC
GCCATCGCGCGCTTAGGCGCACAAGAAACAGAGCAGCCGGCGTGCTCTCCTTCTGATCACGTCCACACAGGGACGAAATA
TGACTCAGATAAATCTCGAGGTAACCAGTCTATCGATTG-CTTATTTTCTTGGAACTAGCAGCGTGGCGTGGCGTGGCAC
CAATGGTCTGTCTCTGCAGGAATCGCTAGAGAATACTAGTATCAGCAATTAGCAACCACAAAATGATTCTGCATAGCAA-
------CATGAATTTCGGTATTTTTATCTGGTCGAGTTGTCGGTGATATACCACAAGATGA----TTGCGGTGGATGCAG
ACACACCTCTGATAGGATAAGAAAATGGTACGAGTTCAACAAGACAGCAATAATGCATCCATTTGCTAA--ATATGATCT
GCTGATGGACTGCATGAGAACTGTTCAGGGATGTCACTCTTG------GGAATCAGAAGATGGGAATGCTTTTCACAGGG
TGTTTGGTTCAGAAGTCCTAGGACTTTTTCTAGTCCCTATAAAAAAGTCCCTCCCGTTTGGTTCCTAGGGACTTTTTATG
GACTTTTTCTAGTCTCTGGGACTAAAAAGTCCCTGAACCAAACACCCCTCAATGGGTTTCAACTGCCCAAAATTGAGTTA
CAAGGAACCTGAACCCAGTTT-GGCACTTGCGCACTTCAGTAGTTCTGAATGAAAAAGGTGGTCCACCTGCCAGCTCAGT
GCTT---------------TTTCTTTTCTTTTGAAAGATCCAACATGCTGCCGGCATTCATTCATTGATTTAGTAGAAGA
GAGCGGAAAACAGGGTC----GATCAAGTGATCGCATGAATGATACTGAAAACAGAAAAGAG-----------AAGGAGC
CCCTGGGCTCAAGCTATTCTAACTCCTCACA-AGATTTTCCTTCTCCCCGAATGTGCAGCAGTTCCTTTCTTTTCAAATT
TCTCAGTTGATCAGGATAATCATGGATTTTATAGCCCATCTTGCCACGCCGGGAGCCGTCTGCCGA---CCGATGCTGTG
AACTGTGAACGGCATCGGCAGGGTTGCCGAATTGCAGCTCAGTGTTGTTGTTGAACAAC------TCCAAGTGCAGTAAA
CATATGAATGAAGCTGGAACCGGCCAAACAACAATTTGTGCGGTTTTTCTATTTCTCGGCTGCCTGGAAATCCTAATTGT
GCCAGTGATTATTGCGGGAAGAAGAGGTAGGCCGCAGCATCCCGGCGAGGCCGCGCTATGA-------GCGAGTCAGAGG
CGCGACCTCGTAGGTGAAGGCGAATTGGAGGTTTGACATGCGCTAGGAGACCGGTCAAGGAAGAAGTCTGACGATTTGGC
CGTTTATTTTTCATCTAACGGTTCAGATTATTCCAAATCGACTGACCCTATCATTTTTTCCAGTCAATTGAAGGATAGGT
GGACCTTAATTTGTGATAAATATTTTTTATGCTTTTGGCCTTTTCCTACTAGTATACTCTATTACTTCAAATGTACATTA
GCGAATCCAACTGAAAAAACTGTA--CATCAGCGAATGAAAATGGTCTTGGAATTCTTCGTGTTGACAACTGATAGTTGA
CATTGTGCTCAGGTCTAGAGTCTCAACGCGTCGTCTCCATCGGTAGCGAGATCTGCGAGCAAGATCGTGGCGCCGACGAC
GACCAACCCCG------TGCCACCAACCTCAGCGTCCTCCGAAGAACGTCGAGCACCGACAGCGGCGAAGGCCCGTACGT
ATCCCTATTCGAGCTCGCTCCCCTCGTCGCCCTCCCGGAAGACACCCT---GCCGGATTACGATGCCAAAGAAGCACCTC
ACGGCCACGGGCACGG---GACGGCGAAGACGGAGCACGACGAGAGCGCGTCCCCGAGCGCCGCGGCAGGCGGCGAGCAG
GCGCTGACCGTGAGCGGCCTCGTGGCCGCCCTCCGCGCCCAGCGGAGGGAGCTGGAGGCGGCGCGCGCGGAGCTGCACGG
CGAGCGGCGCGCCAGGGCGGAGCTGGAGGAGCAGGGCGAGCTGGACCGGGAGGCGGCGCGGGTGGCCATGCAGCTCGTCC
ACGAGACGGAGACGGAGAAGCACGAGCTGCAGCAGCAGCTCGACGCGTTCAGAGTCAGGGTCCAGCTCCACGGCCACGAG
GCCGCCGCCGCCTCCTTGGACGCGGACTGCTCTGCTC---CTCCGGCCAACCGGCTCGGGCGCCGGCTGAGCCGCGACGG
TGATGGTGAACTGGTGGGCC------TGGAAGACGAGGCGGGCTGGAGCGAGAACAAGAACTACCAGTCGCTGGTGGACT
TCCTGCCGGGCTCGGTCTACTCCTCGTCGCCGGACCTGGCCAACCTGCTGAGGCTCTACACGGAAGGCAATGGCAATGGC
GCTCGTCGGCCGAAAGAGGGTGATATCACTGAGGAGGAGGA---------AGAGGAGGTCGTCGTCGTCGCCGTCACGGC
CGCAGCTGTTTCCGGTTTCGACGGAGTGGACGGTGAGGAGGCCACTAGCACTGCTGCTGCTGCTGCTGCAGCTGCTTCCG
TTTTCGACGAAAGTGGTAGCGACCACGTCGGAGCAGATCTTGCACAAGACGAAGCAGCAGTAATGCGTGCATGATGTATG
ACATTTTACCACCGTGATTGATTTGTTTTCCATTTAACTGCCATT--TTTTATATTATTTGTTGTACAGAGCTTCATATA
TACA----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S----S------------S-
--------------------------------------------------------------------------S-----
S-----------------------------S-------------------------------------------------
----------------------SSS---S---------------------------------------------------
----------------------------------------S---------------------------------------
---------------------------------------------S-S-SSS--SSS------------------S----
--------------------------SSS-S-SSSS-S------------------------------------------
----S--S------S--S------------------------SSSSSSSSSSSSSSSSSSSSSSSSS-------------
------------------------------------------------S-------------------------------
------------------------------------------S-------------------------------------
--SS--S-SS--SS----------------------S-------------------------------------------
---------------------------S--------------------------------------S-------S-----
------------------------S-----S-------SS------S----S----------------------------
-----------------S--------------------------------------------------------------
----------------------------------------------------------S--SSSS--------S------
--------------------------------------------------------------S--S--S-----------
------------------------------------S-S-SSSSSS-------------------------S--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--S-----------S------S-----------S-------------S-------------------------S--SS-S
SS--SSSSSSSSSSSSSSS-----S-------------------------------------------------------
-----------------SSSS------------------------S----------------------------------
---------------S--------------------------------------S------------------S-S----
------------------------------S-------------------S-----------------------------
------------------------------------S-------------------------------------------
------------------------S-------------------------S---------------S-------S-----
-------------------------------------------------------------SSSSSSS------------
----------------------------------------S---------S------------------------S----
----S----S----------------------------------------------------------------------
-S-----------------S-----------------------S--------S-S---S--S-----------S------
------------------S-------S-----------------S----S--------------------S---------
-S--------------S---------------------------------------------------------------
-----S--S--SSSSSS----------------S---------------------SS-----------------------
-----------------------------------------S--S----SS-----------------------------
----S-----S---S-SSS--------S------------------S-------------S-----------------S-
--------------------------------------------------------------------------------
------------S-------------------------------------------------------------------
-----S-----------------------------------------S------------------------S-S-----
-------S-----------------SSS---SSS--S---------S--S------------------------------
S-S-S----SSS--------SSSSSS------------------------------------------------------
-------------------------------------------------------------------------------S
S----------------------S-----------------SSSSSSSSS------------------------------
---------S--S--------------------------------------S-------------S---SS---------
-------S-----S--------------------------------------------S---------------------
----------------------S-------S-------S---------------S---------S----------S-S--
----SSSSSSS----------S-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_161
--------------------------------------------------------------------------------
-------------------------------------------------------------TCCCACCCTTTTTGTGTGC
T-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------
>reverse_1214
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------AGAAGAACGAGACGCCTTCC-----------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------
>forward_364
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------CTGCCGACCCAAATGCAAAA------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------
>reverse_2543
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------CCATGAGCGGAGGTTTGA
CA------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------
>forward_366
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------GCCGACCCAAATGCAAAACT----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------
>reverse_2546
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------------------TGAGCGGAGGTTTGA
CATGT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------
>forward_907
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------CACCTAACCCGCCATTGTCT-----------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------
>reverse_2547
--------------------------------------------------------------------------------
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------------------------------------------------------------------GAGCGGAGGTTTGA
CATGTG--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------
>forward_2236
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------CAGCAGTTCCTTTCTTGCCG----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------
>reverse_4096
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------TTGCAGATGCTCGAGGTTGT---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------
