>input_sequence_30335
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-------------------------------------------------------------------------------C
CTCTGCCCTTCCCCTGCTTTGCCCTTTCATAGCCGGAAAGAAGAAGGTAGTCTCCGCCGGCCGCCTCTTGGTGCTTTGCT
TCTAGAGCAGGAAACGACGTTCTTGGATCGTCCCGGCGACTC-GCCGGCGAGAGAAAAGAAGGAGAATCTTTGGTGTTTG
GTCCCGACTCTCCCTCCGGTCGTCGTTTCG-TTGCCGGCGCGATGAGTAATACGCTGCTCCGAATCTACCCTTCCGAGCT
CAAGATGCCATGTAAGTTGCTTCCGGCACCTGCCCTCAGCTAGTTTCTGCTGTTTCTTGATCCGTATTGCCCTGTGGGGA
CTGATCGGATCGTTCATGTGTCGATGTTCCGAGCAGTTGAGCTCAGGAAGTCGAATACAGGATGCATCGAGCTCGTCAAC
AAGACCGATCAGCGTGTAGCTTTCAAGGTGGGGATTTTTGCCACGGTTTTGTTCTGAGTTCTGAAACCTGCAGGGTGATA
TTCTGGAGGAATTTTGCTGACGGATTTCCTATGCGATGCTCAATGTGCAGGTAAAAACAACGAACCCAAAAAAGTACGCA
GTGCGGCCTACCTCCGGCATCGTGCCGCCAGGGGGATCCTGCGGTATCACAAGTGCGTCCACTTTGCTGCATTATATGCA
TTATTGTTACTCCCTCTGTAAACTAATATAAGTGATCTAAACGCTCTTATATTAGTTTACAGAGGGAGTACTTGATTGGT
TGATGAGCCCATCTCATGTGGCATTGTTGCCTGCTCTAGTTACGATGCAGGCACCCAAGGAGATCCCCCAGGATTACCAA
TGCAAGGACAAGTTCCTCATTCAAAGCGTCATAGTGCAGGAAGGGATAACGCATAAGGACATTGTCCCTGAGATGGTAAG
TTCTTGCAGCACCCGAGGTTGACACCGTGGATGTTGATTGATTGTGTCGTCTGTGTCATCTGTAATGTGAGTGTTACGGT
TTGTAGTTCGGCAGAGCGCCTGGCAGGGTGGTGGAGGAGTTCAAGCTGCGGGTGATCTACATCCCTGCAAATCCCCCCTC
ACCGGTGCCTGAGGGAGACGAGGAAGAGATTGCAGATATGGAGGTCGACCATGAAGTGTTTAGACAATCCATGATCGATG
CTGTAAGTGGTGCCATTGCTTCTTGATGCTGTAAGATATGATGCCATGTTTGTTCCTAAATCCTAACGATGGTTGGTGTG
CTCTCTTCCTTTTCAGGCATCTAGGCAAGAATATGCATCTGGACCACAAGCTTCACATGACAAGGTGACTGTTTGTTCCA
CTAAAAACAGCATTGCTATGTTCTTGTATCTGTCAGTGATAAAGTATCCTCGCTGAT-------------ACATAACAA-
-----------------------------------------------------------------------CATCAAATT
ATTATGCTTTAAAAA--AACCTG--------------------------TACTTCGAAATGCGATATTTAGCTCTAGTT-
---GAGCACTATCATATGCTTGCAAGCTACAGACTCTTGCCATGTATAACCTACCAATTGACTTAGATTTTTATTGTTTG
AAGAGCATTGTAATAGCTAAACTCATTTTTCTTAAATGCCCCTCTCTGTGCCATTGTCGGCATGACAGTGATACCTAATG
TTTACTAATGCTCGTCTGCGTTGATAGATTTTT--TTTCTGCTATTATATTTATACCATCTTAAAAGTTCCTGAACAAAT
TAATGTTTCTGACATTACTGATATTCTGTGATTCTTTAGGACGCCTCTACGGTTAAGTCAGAAGTTGTTAAATATGTAGC
TGAAAACAAGAAGCTTCAACAAGAGCTGGTATGACTTCTCATCTAATGAGGATATATTGGCACTATTTCAGTATAACTAT
TATGTTGCTGTGCTACTTTTCCCCAAAAATTTTATCCTGAAAACATATTTCATTGTTCTTTTAAGAAATGAATGACAGAG
ATCAATTTATGATCCAAGTTCTGCTGAGAAACTGGGGAAATCTTGATTTGTATTGCTCGCACAATTATATTGCAGACATA
ACTAATTTTGCAAGAAATTAACCCGAGCAGTCTGGTAACTCCTGCCAAACCTGATATAATATCTCCGGACTATCATAACA
CAACACGAAAAGATCAAAAGAAGTTGACAGGAGTTCTGCCAAAAGATATTAATATCTCCTACTATCATAATACATTAATG
GAAAAAAGTCAACTTGTTTGCTTTTCCGAACCAAACTCTGTTGCTAGACATTATGATTTTGTATTCTGATATCTAATCCT
AGTAAACGCTGCTTCATTTTCAGGAACAGCTTAGCGAGAGAAGGCAGTCTCTTGGGGGTTTCTCACGTACGTTTGTGCTC
CTCGTCTTCCTGTTATCTGTTCTTGTTGGATACTGGATGACAGGTCGGAAGGTTTAGCCACAAATAGCGGCTACATATAC
ATGTGGTTTTGCGGCTTGGCGTATGCCTTGCCTGGTTACCCCTTGTTTTGGATGGTTTTTCTCTTATG---TTCTTTTAG
TATAGTCTACACTGTATAGAGAGGTGTTCTGGGTTTGAAGTTATACATGTGTTGGGAATGTACATTTTTTTGTGGAATAT
GCAGAAGACACTGCATATCTATTCCATTAAGAACTCGCCCCTTTGAACAAGATTCTAATGACAACTGCATTGTGTTTTT-
-TTTCCTTT-----------------------------------------------------------------------
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-------------------------------------------------------
>chr6D_1_TraesCS6D01G229800
CAAGAAAAGTCGATCATTTTTCATGGCAAATTAAATTTGTTGA-GA-----TGACAAATTTAGTTGGTTGAGTATGGCAA
ATCCGCTTCAG----------------TTTAATAGAAGTTTTGTTTTAGCATAAGATTTATATGTGCTAGGGATACATCT
AG--TATATGTTTTATAGCAAAACCAAAAGTTGTTAATGTCAGGAAAAGGGGGACGCGGGCGTCGGTCGGAGTCGGAGAG
GACAAAGGGAAAGAAAAGAGATAGGATCCTTTCCCGGGCGGCGACGTGGGTGCCGTGTCCGGCCAATCCCAACTGGCAAA
CCCGGCTCCGCCGCCGTTGCCCGAACCCAGCTACTATTATAAACTCCTCAACCAACGCAACGCAACGCAAGGCGCGCTAC
AGATAAAAGGGAACCAAGAAAGAAGAAG---------CCCACGACGCAACCGCTCCCA----ATCCAT-AATCAATCAAT
CAGCCAATCGCCAGTGTTT-CCCAACCGAAACCGCCTAATCCATCCATCAATCCTCTGTCTACGCCAACCCGAATTCCTC
CCTTCCACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
CTCTGCCCTTCCCCTGCTTTGCCCTTTCATAGCCGGAAAGAAGAAGGTAGTCTCCGCCGGCCGCCTCTTGGTGCTTTGCT
TCTAGAGCAGGAAACGACGTTCTTGGATCGTCCCGGCGACTC-GCCGGCGAGAGAAAAGAAGGAGAATCTTTGGTGTTTG
GTCCCGACTCTCCCTCCGGTCGTCGTTTCG-TTGCCGGCGCGATGAGTAATACGCTGCTCCGAATCTACCCTTCCGAGCT
CAAGATGCCATGTAAGTTGCTTCCGGCACCTGCCCTCAGCTAGTTTCTGCTGTTTCTTGATCCGTATTGCCCTGTGGGGA
CTGATCGGATCGTTCATGTGTCGATGTTCCGAGCAGTTGAGCTCAGGAAGTCGAATACAGGATGCATCGAGCTCGTCAAC
AAGACCGATCAGCGTGTAGCTTTCAAGGTGGGGATTTTTGCCACGGTTTTGTTCTGAGTTCTGAAACCTGCAGGGTGATA
TTCTGGAGGAATTTTGCTGACGGATTTCCTATGCGATGCTCAATGTGCAGGTAAAAACAACGAACCCAAAAAAGTACGCA
GTGCGGCCTACCTCCGGCATCGTGCCGCCAGGGGGATCCTGCGGTATCACAAGTGCGTCCACTTTGCTGCATTATATGCA
TTATTGTTACTCCCTCTGTAAACTAATATAAGTGATCTAAACGCTCTTATATTAGTTTACAGAGGGAGTACTTGATTGGT
TGATGAGCCCATCTCATGTGGCATTGTTGCCTGCTCTAGTTACGATGCAGGCACCCAAGGAGATCCCCCAGGATTACCAA
TGCAAGGACAAGTTCCTCATTCAAAGCGTCATAGTGCAGGAAGGGATAACGCATAAGGACATTGTCCCTGAGATGGTAAG
TTCTTGCAGCACCCGAGGTTGACACCGTGGATGTTGATTGATTGTGTCGTCTGTGTCATCTGTAATGTGAGTGTTACGGT
TTGTAGTTCGGCAGAGCGCCTGGCAGGGTGGTGGAGGAGTTCAAGCTGCGGGTGATCTACATCCCTGCAAATCCCCCCTC
ACCGGTGCCTGAGGGAGACGAGGAAGAGATTGCAGATATGGAGGTCGACCATGAAGTGTTTAGACAATCCATGATCGATG
CTGTAAGTGGTGCCATTGCTTCTTGATGCTGTAAGATATGATGCCATGTTTGTTCCTAAATCCTAACGATGGTTGGTGTG
CTCTCTTCCTTTTCAGGCATCTAGGCAAGAATATGCATCTGGACCACAAGCTTCACATGACAAGGTGACTGTTTGTTCCA
CTAAAAACAGCATTGCTATGTTCTTGTATCTGTCAGTGATAAAGTATCCTCGCTGAT-------------ACATAACAA-
-----------------------------------------------------------------------CATCAAATT
ATTATGCTTTAAAAA--AACCTG--------------------------TACTTCGAAATGCGATATTTAGCTCTAGTT-
---GAGCACTATCATATGCTTGCAAGCTACAGACTCTTGCCATGTATAACCTACCAATTGACTTAGATTTTTATTGTTTG
AAGAGCATTGTAATAGCTAAACTCATTTTTCTTAAATGCCCCTCTCTGTGCCATTGTCGGCATGACAGTGATACCTAATG
TTTACTAATGCTCGTCTGCGTTGATAGATTTTT--TTTCTGCTATTATATTTATACCATCTTAAAAGTTCCTGAACAAAT
TAATGTTTCTGACATTACTGATATTCTGTGATTCTTTAGGACGCCTCTACGGTTAAGTCAGAAGTTGTTAAATATGTAGC
TGAAAACAAGAAGCTTCAACAAGAGCTGGTATGACTTCTCATCTAATGAGGATATATTGGCACTATTTCAGTATAACTAT
TATGTTGCTGTGCTACTTTTCCCCAAAAATTTTATCCTGAAAACATATTTCATTGTTCTTTTAAGAAATGAATGACAGAG
ATCAATTTATGATCCAAGTTCTGCTGAGAAACTGGGGAAATCTTGATTTGTATTGCTCGCACAATTATATTGCAGACATA
ACTAATTTTGCAAGAAATTAACCCGAGCAGTCTGGTAACTCCTGCCAAACCTGATATAATATCTCCGGACTATCATAACA
CAACACGAAAAGATCAAAAGAAGTTGACAGGAGTTCTGCCAAAAGATATTAATATCTCCTACTATCATAATACATTAATG
GAAAAAAGTCAACTTGTTTGCTTTTCCGAACCAAACTCTGTTGCTAGACATTATGATTTTGTATTCTGATATCTAATCCT
AGTAAACGCTGCTTCATTTTCAGGAACAGCTTAGCGAGAGAAGGCAGTCTCTTGGGGGTTTCTCACGTACGTTTGTGCTC
CTCGTCTTCCTGTTATCTGTTCTTGTTGGATACTGGATGACAGGTCGGAAGGTTTAGCCACAAATAGCGGCTACATATAC
ATGTGGTTTTGCGGCTTGGCGTATGCCTTGCCTGGTTACCCCTTGTTTTGGATGGTTTTTCTCTTATG---TTCTTTTAG
TATAGTCTACACTGTATAGAGAGGTGTTCTGGGTTTGAAGTTATACATGTGTTGGGAATGTACATTTTTTTGTGGAATAT
GCAGAAGACACTGCATATCTATTCCATTAAGAACTCGCCCCTTTGAACAAGATTCTAATGACAACTGCATTGTGTTTTT-
-TTTCCTTTTTGCAAATTTTAGAACCTTT-GTTAACAGATTCCACTACCTGCTGCAATCTGTTTCTTTAACCTCCTGCTT
G-AGGAAAAGAACACTGTCAGTAATAAAGTATCCTCTAGTGGAAGGCCTGGGCCTTGACC----ATGTAAGGAAGCCCGT
AACTGCCTAGCCCGGTAGCGTAGCCCACTCGATCAGTCCACCAGCAGGCGACGCCCTAAATTCAGGCATTACCTGGCGGA
CCTATACTCTCAACAAATAGTCTTAAAATGTTAAATATTCAGTGTTTAAGCATACACAGTAGTAAAACTGGGAGCACTGC
CTTGCCGCCATGGTGACTTGGCTGAGGGATTCTATTGCCAACTCTGGGCCCCTAAGTACCTGACCTTCCAGAAACCTTAA
GGACTCCTCCACCCTCCCTCCTCCCACCGCCGCCGCCACCCAAGAGCTTCCAACCATGGCGGAAAGTGGTCGGGGGCGTG
GCCGAGGCAAACACAAAGGAGGAAGAGGTGAGATCGGCAACAACTGGAGACAAGAGCCACCCCTGCAGCCTCAGATGGGC
GGGCCACCGCCATTCTTCGGTTATGGGTTTCAGGGCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGTCCGGTTGC
GCAATGGTATGGGCCGCCTCCTCCTCAGAATGGACGCCCAGAAGTTTGTCCTTGC
>chr6A_1
CAAGAAAAGTCGATCATTTTTCATGGCAAATTACATTACATTCGTCCAGGGTGATAAATTTAGTTGAC-GAGTATGGCAA
ATCCGTCTCAG----------------TTTAACAGAAATTGTATTTTAG----GGATTTATATGTGCAATATATAGAGTA
CATC--TATGTGTTTTAGCAAAATCAAAAGTTGTTAATGTTATGAAAAGGTGGGCGCGGGCGTCGGTCGGAGTTGGAGAG
GACAAAGGGGAAGAAAAGATATAGGATCCTTTCCCGGGCGGCGACGTGGGTGCCGTGTCCGGCCAATCCCAACTGGCAAA
CCCGGCTCCGCCGCCGTTGCCCGAACCCAGCTACTATTATAAACTCCTCAACCAACGCAACGCAACGCAAGGCGCGCTAC
AGATAAAAGGGAACCAAGAAAGAAGAACCCCGGATTGCCCACGACGCAACCGCTCCCAATCCATCCATCAATCAATCAAT
CAGCCAATCGCCAGTGTTT-CCCAACCGAAACCGCCTAATCCATCCATCAATCCTCTGTCTGCGCCAGCCCGAATTCCTC
CC----------------------CTCCTCCGATACGCCCCCTCTCCCCCATCGACAAAT--------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------C
CTCTGCCCTTCCCCTGCTTCGCCCTT-CATAGCCGGAAAGAAGAGGATAGCCTCCGCCGGCCGCCTCTTGGTGCTTTGCT
TCTAGAGCAGGAAACGACGTTCTTGGATCGTCCTCGCGACTCTGCCGGCGAGTGAAAAGGAGGAGAATCTTTGGTGTTTG
GTCCCGACTCTCCCTCCGGTCGTCGTTTCGTTTGCCGGCACGATGAGTAATACGCTGCTCCGAATCTACCCTTCCGAGCT
CAAGATGCCATGTAAGTTGCTTCCGGCACCTGCCCTCAGCTAGTTTCTGCTGTTTCTTGATCCCTATTGGCCTGTGGGGA
CTGATCGGATCGTTCATGTGTCGATGTTCCGAGCAGTTGAGCTCAGGAAGTCGAATTCAGGATGCATCGAGCTCGTCAAC
AAGACCGATCAGCGTGTAGCTTTCAAGGTGGGGATTTTTGCCACGGTTTTGTTCTGAGTTCTGAAACCTGCAGTGTGATA
TTCTGGAGGTATCTTGCTGACGGATTTCCTATGCGATGCTCAATGTGCAGGTGAAAACAACTAACCCCAAAAAGTACGCA
GTGCGGCCTACCTCCGGCATCGTGCCGCCAGGGGGATCCTGCGGTATCACAAGTGCGTCCACTTTGCTGCATTAGATGCG
TTATTGT-------------------------------------------------------------TACTTGATTGGT
TGATGAGCCA--CTCATGTGGCATTGTTGCCTGTTCTAGTTACGATGCAGGCACCCAAGGAGATCCCGCAGGATTACCAA
TGCAAGGACAAGTTCCTCATTCAAAGCGTCATAGTGCAGGAAGGGGTAACGCATAAGGACATTGTCCCTGAGATGGTAAG
TTCTTGCAGCACCCGAGGCCGACCCCGTGGATGTTGATTGATTGTGTCGTTTGTGTGAGCTGTAATGTGAGTGTTATGGT
TTGTAGTTCGGCAGAGCGCCTGGCAGGGTGGTGGAGGAGTTCAAGCTGCGGGTGATCTACATCCCTGCAAATCCCCCCTC
ACCGGTGCCTGAGGGAGACGAGGAAGAGATTGCAGATATGGAGGTCGACCATGAAGTGTTTAGACAATCCATGATCGATG
CTGTAAGTGGTGCCATTGCTGCTTGATGCTGTAAGATATGATGCCATGTTTGTTCCTAAATCCTAATGATGGTTGGTGTG
CTCTCTTCCTTTTCAGGCATCTAGGCAAGAATATGCATCTGGACCACAAGCTTCACATGACAAGGTGACTGTTTGTTCCA
CTGAAAACAGCATTGCTATGTTCTTGCATCTGTCAGTGACAGAACATTGTGTCTAAATACCTGTTGTTGCACATAACAAC
ATCAAATGTGCAGTACATTACTCAGTGATACACTGTGCTTTGCACTATTATTCTGCTTGGATGTTTATCTTCATCAAATT
ATTATGCTTAAAAAA--ATGTACTCCCTCCGATCCATATTACTTGTCGCTATTTGGAATGGCGATATTTAGCTCTAGTT-
---TAGCACTGTCATATGCTTGCAAGCTACAGACTCTTGCCATGTA--ACCTACCAATCGACTAGGATTTTTATTGTTTG
AAGAGAATTGTAGTAGCTAATCTCATATTTCTTAAATGCCCCTCTCCGTGCCATTGTTGGTATGACAGTGATATCTAATG
TTTATTAATGCTCGTCTACATTGATAGAATTTTCGTTTCTATTATTATGTTTATACCATCTTAAAAGTTCCCGAGCAAAT
TTATGTTTCTGAGATTATTGATCTGCTGTGATTCTTTAGGACGCCTCTACGGTAAAGTCAGAAGTTGTTAAATATGTGGC
TGAAAACAAGAAGCTTCAACAAGAGCTGGTATGACTTCTCATCTAATGAGGATATATTGACACTATTTCCATATAAGTAT
TATGTGGCTGTGTCACTTCTCCCCAAAATCTTTATCCTGAAAACATGTTGCATTTTTTTAA-GAAATG---ATGAAAGAG
ATCAATTTATCATCCAAGTTATGCAGAGAAACTGGGTAAATCTTGATGTGTATTGCCCGCACAATTATATTGCAGACATA
ACTAATTTTGCAAGAAAGTAACCTGATCAGTCTGGTAACTCCTGCCAAACCTGATATAATATCTCCAGACTATCATAACA
CAACACGAAAAGATCAAAAGAAGTTGACAGGAGTTCTGCCAAAAGAAAATAATATCTCCTACTATCATAATACATTAATG
GAAAAAAGTTAACTTGTTTGCTTTTCCAAACCAAACTCTGTTGCTAGACATTATGATTTTGTATTCTGATATCTAATCCT
AGTAAACGCTGCTTCATTTTCAGGAACAGCTTAGCGAGAGAAGGCAGTCTCTTGGGGGTTTCTCACGTACGTTTGTGCTC
TTCGTCTTCCTGTTATCTGTTCTTGTTGGATACTGGATGACAGGTCGGAAGGTTTAGCCACAAATAGTGGCTACATATAC
ATATGGTTTTGCGGCTTGGTGTATGCCTTGCCTGGTTACCCCTTGTTTTGGATGATTTTTCTCTTCTGTTTTTTTTTTAG
TTTAGTCTACACTGTATAGACAGGTGTTCTGGGTTTGAAGTTATACATGTGTTGGGGGTGTACATTTTTT-GTGGAATAT
GCAGAAGACACTGCATATCTATTCCATTAAGAACTCACCCCTTTGAACAAGATTCAAATGATAACTGCATTGTGTTTTTT
ATTTCCTTTTTGCAAATTTTATAACCTTTTGTCAATTGATTCCACCACCTGCTGCAATCTGTTTCCTTAACCTCCTGCTT
GTAAGGAAAGAAAACTGACGGTGATATAGTATGCCCTAGTGGAAGGCCTGGGCCTT--CCATGTATGTAAGGAAGCCCGT
AACTGCCTGGCCCGGTAGCGTAGCCCACTTGATCAGCCCCACCGCAGGCGATGCCCTAGAAT------------------
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-------------------------------------------------------
>chr6B_5
----AAAAGTCGAACATTTTT-ATGGGAACTTATATTGGTTGGGGA-----TGACAAATTTAGTTGGT-GAGTATGGCAA
AACCGCCTCAAGTAAAATCCGCTCCAATTTAACAGAAGTTGTGTTTTAGCATAGGACTTATATGTGCAATACTTAAGGTA
TATCTATGTTTTTTATAGCAAAACCAAAACTGGTTAATGTTAGGAAAAGGTGGACGCGGGCGTCGGTCGGAGTCGGAGAG
GACAAAGGGAAAGAAAAGAGATATGATCCTTTCCCGGGCGGCGACGTGGGTGCCGTGTCCGGCCAATCCCAACTGGCAAA
CCCGGCTCCGCCGCCGTTGCCCGAATCCAGCTACTAC--TAAACTCCTCAACCAACGCAACG-----CAAGGCGCGCTAC
AGATAAAAGGGAACCAAGAAAGAAGAAGCCCGGATTGCCCACGACGCAACCGCTCCCA----ATCCATCAATCAATCAAT
CAGCCAATCGCCAGTGTTTTCCCAACCGAAACCGCCTAATCCATCCATCAATCCTCTGTCTACGCCAGCCCGAATTCCTC
CCTTCCACCCTCCGGAGCCCTCTCCTCCTCCGATTCGCCCCCTCTCCCCCATCTACGAAT--------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------C
CTCTGCCCTTCCCCTGCTTCGCCCTT-CATAGCCGGAAAGAAGAGGATAGCCTCCGCCAGCCGCCTCTTGGTGCTTTGCT
TCTAGAGCAGGAAACGAC----------------------TCTGCCGGCGAGTGGAAAGAAGGAGAATCTTTGGTGTTTG
GTCCCGACTCTCCCTCCGGTCGTCGTTTCGTTTGCCGGCGCGATGAGTAATACGCTGCTCCGAATCTACCCTTCCGAGCT
CAAGATGCCATGTAAGTTGCTTCCGGCACCTGCCCTCAGCTAGTTTCTGCTGTTTCTTGATCCCTGTTGGCCTGTGGGGA
CTGATCGGATCGTTCATGATTCGATGTTCCGAGCAGTTGAGCTCAGGAAGTCGAATTCAGGATGCATCGAGCTCGTCAAC
AAGACCGATCAGCGTGTAGCTTTCAAGGTGGGGATTTTGCCCACGGTTTTGTTCTGAGTTCTGAAACCTGCAGTGTGATA
TTCTGGAGGAATCTTGCTGACGGATTTCCTATGCGATGCTCAATGTGCAGGTGAAAACAACGAACCCAAAAAAGTACGCG
GTGCGGCCTACCTCCGGCATCGTGCCGCCAGGGGGATCCTGCGGCATCACGAGTGCGTCTACTTTGC---ATTAGATGCG
TTAATTGCTACT-------------------------------------------------------GTAGTTGATTGGT
TGATGAGCCCATCTCATGTGGCATTGCTGCTTGCTCTAGTTACGATGCAGGCACCCAAGGAGATCCCGCAGGATTACCAA
TGCAAGGACAAGTTTCTCATTCAGAGCGTTGTGGTGCAGGAAGGGATAACGCATAAGGACATTGTCCCTGAGATGGTAAG
TTCTTGCAGCACTCAAGGTCCACGCCGTGGATGT----------TGTCGTCTGTGTCATTTGTAATGTGAGTGTTACGGT
TTGTAGTTCGGCAGAGCGCCTGGCAGGGTGGTGGAGGAGTTCAAGCTGCGGGTGATCTACATCCCTGCAAATCCCCCCTC
ACCGGTGCCTGAGGGAGACGAGGAAGAGATTGCAGATACGGAGGTCGACCATGAAGTGTTTAGACAATCCATGATCGATG
CTGTAAGTGGTGACATTGCTGCTTGATGCTGTAAGATATGATGCCATGTTTGTTCCTAAATCCTAATGATGGTTAGTGTG
CTCTCTTCCTTTTCAGGCATCTAGGCAAGAATATGCATCTGGACCACAAGCTTCACATGACAAGGTGACTGTTTGTTCCA
CTGAAAACAGCATTACTATGTTCTTGTATCTGTCAGTGACAGAACATTGTGTCTAAGTACCTGTTGTTGCACACAACAAC
ATCAAATGTGCAGTACATTACTCAGTTATACACTGTGGTTTGCACTATTATTCTGCTTGGATGTTTATCTTCATCAAATT
ATTATGCTTAAAAGAACATTTACTCCCTCCAATCCATATTACTTGTCGCTGCTTGGAATGGCGATATTTAGCTCTAGTTA
GCATAGCACTGTCATATGCTTGCAAGCTACAGACTCTTGCCATGTA--ACCTACCAATTGACTAGGATTTTTATTGTTTG
AAGAGAATTGTAGTAGCTAATCTCATATTTCTTAAATGCCCCTCTCCGTGCCATTGTCGGTATGACAGTGATATCTAATG
TTTATTAATGCTCGTCTACATTGATAGAATTTTCGTTTCTATTATTATGTTTATACCATCTTAAAAGTTCCCAAGCAAAT
TTATGTTTCTGACATTATTGATCTGCTCTGATCCTTTAGGACGCCTCTACGGTAAAGTCAGAAGTTGTTAAATATGTGGC
TGAAAACAAGAAGCTTCAACAAGAGCTGGTATGACTTCTCATCTAATGAGGATATATTGACACTATTTCCATATAAGTAT
TATGTGGCTGTGTCTCTTCTCCCCAAAATCTTTATCCTGAAAACATGTTGCATTTTTTTTACGAAATG---ATGAAAGAG
ATCAATTTATCTTCCAAGTTATGCAGAG-AACTAGGTAAATCTTGATGTGTATTGCTCGCGCAATTATATTGCAGACATA
ACTAATTTTGCAAGAAATTAACCTGAGCAGTCTGGTAACTCCTGCCAAACCTGATATAATATCTCCGAACTATCATAACA
CAACACGAAAAGATCAAAAGAAGTTGACAGGAGTTCTGCCAAAAGATAATAATATCTCCTACTATCATAATACAATAATG
GAAAAAAGTCAACTTGTTTGCTTTTCCGAACCAAACTCTGTTGCTAGACATTATGATTTTGTATTCTGATATCTAATCCT
AGTAAACGCTGCTTCATTTTCAGGAACAGCTTAGCGAGAGAAGGCAGTCTCTTGGGGGTTTCTCACGTACGTTTGTGCTC
TTCGTCTTCCTGTTATCTGTTCTTGTTGGATACTGGATGACAGGTCGGAAGGTTTAACCACAAATAGCGGCTACATATAC
ATATGGTTTTGCGGCTTGGCGTATGCCTTGCCTGGTTACCCCTTGTTTTGGATGATTTTTCTCTTCT---TTTTTTTTAG
TTTAGTCTACACTGTATAGACAGGTGTTCTGGGTTTGAAGTTATACATGTGTTGGGGGTGTACATTTTTTGTGC-AATAT
GCAGAAGACACTGCATATCTATTCCATTAAGAACTCACCCCTTTGAACAAGATTCAAATGATAACTGCATTGTGTTTTTT
ATTTCC-TTTTGCAAATTTTAGAACCTTTTGTTAACAGATTCCACCACCTGCTGCAATCTGTTTCTTTAACCTCCTGCTT
GTAGGAAAAGAAAACTGACAGTGATATAGTATCCTCTAGTGGAAGGCCTGGGCCTTGACCATGTATGTAAGGAAGCCCGT
AACTGCCTGGCCCGGTAGTGTAGCCCACTTGATCAGCCCCACCGCAGGCGATGCCCTAGAAT------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------------------
>SNPs
---------------------------------S---S----S-------------------------S-----------
------S-------------------------S-------S------------S-------------S-SSS---S-SSS
SS--------------------------------------S---------S-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------S------------
---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-
-------------------S------S-----------------S-S---S-----------------------------
---------------------------------SS-----------------S---------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------S-----S----------
--------------------------------------------------------S-----------------------
-------------------------------------------------------------------------S------
------------S---------------------------------------S---------------------------
--------------------------------------------------------------------------S----S
-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------
-------------------------------------------------------------------S------------
--------------------------------------------------------------------------------
-------------------S---S--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------S---------------------------------------------S-------------
--------------------------------------------------------------------------------
--S------------------------------------S-S-SS--SS-SS--S-S-----------------------
--------------------------------------------------------------------------------
---------S--------SSSSS-------------------------------S---SS--------------------
---S------S-----------------------------------SS---------------SS---------------
-----S------S-------S-----S-------------------S-------------S------------S------
----S------------S-S--------S-----------SS------S----------------------S--S-----
-S---------------S----S-S----------------------------S-----------------------S--
-----------------------------------------------------------S---------SS-----S---
-----S------SS----S---------SS----------------S--S----S--S--SSS-S-SSSSS----S----
----------S---------S---S-----------S----------S--------------------------------
-----------------------S--------------------------------------------------------
------------------------------------------------S-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
S-------------------------------------------------------------------------------
--S---------------------------------------------------S----------S-------S------
-S------------------S-----------------------------------SS------------S---------
------------------------------------S------------------S-----S------------------
---------------------------------------------S----------------------------------
------------S----S----S---S-----------------------------------------------------
--------S--------------------S------S--SS-S--------S------S-S-SSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_87
------------------------------------------------------------------GTTGAGTATGGCAA
ATCCGCT-------------------------------------------------------------------------
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>reverse_1060
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-------------------TGCCCTTTCATAGCCGGAAA-----------------------------------------
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>forward_548
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-----------------------------------------------TCAATCCTCTGTCTACGCCAA------------
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>reverse_2227
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------------------------------------------------------------------CGATGGTTGGTGTG
CTCTCT--------------------------------------------------------------------------
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>forward_1154
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--------------CGACGTTCTTGGATCGTCCC----------------------------------------------
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>reverse_2966
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-----TGCTGTGCTACTTTTCCCCA-------------------------------------------------------
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>forward_1675
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------------------------------------------------------GCGTCCACTTTGCTGCATTAT-----
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>reverse_3144
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-----------------------CGAGCAGTCTGGTAACTCCTG------------------------------------
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>forward_3077
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----------------AGTTCTGCTGAGAAACTGGGG-------------------------------------------
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>reverse_4122
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-----------------------------------------CTCTGGGCCCCTAAGTACCT-------------------
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-------------------------------------------------------
