>input_sequence_29994
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------------------------------------------------------ATGCTAAGATCAGCCTTCCCGCTGGT
GTTCCAGTTGCCGCACAGGAAACCGCCCCCAATCCGCCCACCCCGCCCACCACCTGTTCGTCGCTATGCCTCCCCGGCCG
CCGCCGTCCCGCCGCCGCCCCCTCCGCCACGGCCGCTCCCCCCGGCTTCCGCGTACGTGCACCTCCCCTTCTGCCGCAAG
CGGTGCCACTACTGCGACTTCCCCATCGTGGCGCTCGGCTCCTCCGCGCCCTCCCCCGGCGGCCCGGGCGAGGGCGAGGA
CCCCCGGATCGCCGACTACGTGCGCCTCCTGCTCCGGGAGGTGGCCGCCACGCGGCCCGTCTCCGACGACGGCGTGCCGC
TGCAGACCATCTTCTTCGGCGGCGGCACCCCGTCGCTGGTCCCGCCGAGGCTGGTGGCCGCGGTGCTGGACGCGCTGCGC
GGCAGGTTCGGGCTGTCCGCGTGCCCGGAGGTGTCCATCGAGATGGACCCCGGCACGTTCGACGCGGCCAAGCTGCGGGA
GCTGGTGGGCGTGGGCGTGAATCGGGTGTCGCTCGGCGTGCAGGCGTTCCAGGAGGAGCTGCTCCGGGCGTGCGGCCGCG
CGCACGGCCTGCGGGAGGTGCACGAGGCCGTCGGGATCGTGACCGCCTGCGAGGGGCTCCAGAACTGGAGCATGGACCTC
ATATCCTCCCTGCCCAACCAGACCCAGGAGATGTGGGAGGAGAGCTTGCGGTGCACCGTCGATGCCCGCCCCACGCATGT
CTCCGTCTACGACCTGCAGATCGAGCAGGGCACCAAGTTTGGCCAAATGTGAG-TTCATTCTATCCATATCTATGAGCTA
TGATCCCTATCTTGAAAACATTATCGGTCCTGACAAATA-----TGTGTGTTGTTTGTGGTGGTTCTGTTCTATAGATAA
TAACGAATTGGAGAAAAACTAACACACTGCAACCATCATCGTCACACAGTTAGCTACAAGTGTTGTTTTGATTTGCACTG
GTTTGTGTTTTAGAAGTTCGGTCTTCTCTTATTGGAAAGGGGCTACTTGTATTAATTAGGTTACAGAGCTGAGGTTACGA
TCCTGCAGTATCATAATCAACAGGCAAGCCGGGACTGCATCTTGTAGAACACCACCACACAA------CACCTTTCTACA
GCATCGAGCTAAACCATGCGCTACCCTGTTATCCTGCTTTTAGATTTTGAGTATTCTGTGACTCGGGAATTCAGGCAACA
ATTGACAAATCTCCTGAATGCCACCACTAATTGTGGACCAGCACAACATATGAGGATCGATGGCATTAGCCACCGTCAGG
CTGTTGCTGTCAATCAACATCGGCCTGATTAGTGTAGATCAGCGCCTTTTGGACACCTTCTAGACATGCGATGCAATGGT
TTCTGCTTCTCAGCATTAAGGCATCG-TGGCACCATGTCCTAGGCGGACAGAATTACTTTTTCCTCTTTGATTCTGATCA
CTGCCGTCCAAGTTGCAGTATTAGTTTGGCGGTAAAACTGGTGTCCACGTAATGACATAAACCATCTGACATCAGGTGGC
ATACAACTTATCTAGTAAGGAGTTGTCTCCTTGCTAGCTTGTCCCTGGATTACACTCTTGCGGTCTTGCCCTTTTCATCG
TATTCATTTATATCATGTTTGATATCTTGCAAAGTGTTCCTATAGTTCAGTGAGAACTGAACCGAAGCTCTGACTATTGC
CTCACTGTTTGCGAAGATTATATCACTCCAGAGAAAGAAGTTCAGTCTTCTTATTGAACTCATGATGCTGATAGTTGC-A
TGTTAAAAGGCTTAACTGGATTTGTTTTGGGGTGTATTACTCAACCAATTGCATTATACTACGACCTTATAAAGCCATGT
TGTTCTCTAGCCTGCCATCCTATATCCAAGTTTCTAACAATTTGGTCACATATTAATTTTCAGTCACATTTTTGTATGAA
AGATGAAATGAGCTCATCCTTAAATATGTGTCAGATTGATGCCGATCTCATCCTTTTCATATTAAATGTTGCAGCTATAC
GCCTGGTGTATTTCCTCTCCCAAATGAGACAGACTCTGCAAACTTCTACAAGATCGCTTCAAAACAGCTTTCTGAAGCAG
GATATCAACACTACGAGATCAGTAGCTACTGCAAGCCTGGTTACGAGTGCAAGCACAACGTAACATACTGGCAAAACAGG
CCGTTCTATGCGTTTGGTCTGGGATCGGCAAGCTACATCAACGGTGTCAGGTTCTCTAGGCCCAGAGGAATGAAGAACTA
CGCAGATTGGGTTCAGAAGCTGGAAGACGGGACCTGGTGCCACGAGCCTAGTGTCTCCGAGACGAAGGATATGGCGATGG
ACTCGGTGATGCTATCACTGAGAACAGCTCGCGGGCTGGATCTGCACAGTTTCAGTAAATCTTTTGGCGAGGGTCTGACA
CGGTCATTGTGCGAGACGTTTAGGCCTTTTGTTGAGAGTGGGTTGGTGATCGCCATGGACAAGGAGCGAGTGGCCCTGCA
GTTCAATGAGTTTGAGTCAGATTTG------GA------GGGTGAGATGAGTGGGAGCAGGGTGGCCTTCCTCCGCCTGA
GTGACCCGGATGGATTTCTGCTGTCCAACGAGTTGATCTCGCTTGCCTTTGGGACTATTTCGCCATGA------------
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>chr1A_1_TraesCS1A01G378600
CTCATACACGCTCTTTGAAACCTTTGAATTTGGGAATGCACCATGTGCAAGTTCGCTTGTCCGCAGTTTCTTCACTGGAT
GTTTGAAGAAAAGTCGAGATGCAAGAGACGAGTCTGGAGTCAATGACTACCAAGGACTTTTGATGTAACTTTATTTATGT
TTTATCTTGACCTTTTGATTATTTTTTGTCTTTTTTTAATCTAATGTGATTTGTGTAAACTATCAACAAACATGGTTAAA
TACGACGCTCGTACCCCTTCGCTCCTAGGCAGTGGAACCCTGTCACTAGTGTTTTCCGTGCCTCCCGCCAGCACACCTGA
AGGCCATGGATCCATGGTGGATCCTGACTCTTGCCAACGGGAGGCTTTGTTTTTGGAAGTTTTTTTTAATTTTGTTAGGG
TTTGTGTCCTACTCAGAGATGTTAGGTAGCGC-CGGCTCTTTGAAGATGGAATAATACTCTCCCAGCCCAGCC-CTGGTA
CACCGCTGCTTATAGCATCGTCAGAGGGCGTGTGAAGGTTGGTCTCTGGTGGATCTCATGGGAATCAATCGGCGTTTTGT
CTTTGGTGTATTCATGTGAATTTGTCTTCGTTTGTC---TGCTTGTGTCTCTACAAATCGGATCCTTCAGATCTACGCTT
CTCCTCGTCGATGGCGGTTGTTATTTTGATGCGCTAGTTTATATAGCCTTAC-CACGACGACTTCTCATCTGTCTACTAC
AATAAAATTTGCCCCGTTCCAATAAGGGAGGGTGGTGACGGTGGCGCCCCTTCAG-TCGCTCGAGTGCTTATAGTCGTCG
CTAGATGGTCTACTGATTTTGATGTATTTTTTTTACTTATGTTGTTCTTTGTACTATCTTGACACCTGATGACTAAATAG
AAGTTCTTTAAAAAAACACGTTTGGATTTATTTAAAAATCAATTTGGATGTGTAGCCA---TTCAACTCAATGCAAAATT
GTCTCTTTACCAGCCCACCGGGAGGAGCCTTGGC----AGGCGAGTGGTCAGTAATGCTAAGATCAGCCTTCCCGCTGGT
GTTCCAGTTGCCGCACAGGAAACCGCCCCCAATCCGCCCACCCCGCCCACCACCTGTTCGTCGCTATGCCTCCCCGGCCG
CCGCCGTCCCGCCGCCGCCCCCTCCGCCACGGCCGCTCCCCCCGGCTTCCGCGTACGTGCACCTCCCCTTCTGCCGCAAG
CGGTGCCACTACTGCGACTTCCCCATCGTGGCGCTCGGCTCCTCCGCGCCCTCCCCCGGCGGCCCGGGCGAGGGCGAGGA
CCCCCGGATCGCCGACTACGTGCGCCTCCTGCTCCGGGAGGTGGCCGCCACGCGGCCCGTCTCCGACGACGGCGTGCCGC
TGCAGACCATCTTCTTCGGCGGCGGCACCCCGTCGCTGGTCCCGCCGAGGCTGGTGGCCGCGGTGCTGGACGCGCTGCGC
GGCAGGTTCGGGCTGTCCGCGTGCCCGGAGGTGTCCATCGAGATGGACCCCGGCACGTTCGACGCGGCCAAGCTGCGGGA
GCTGGTGGGCGTGGGCGTGAATCGGGTGTCGCTCGGCGTGCAGGCGTTCCAGGAGGAGCTGCTCCGGGCGTGCGGCCGCG
CGCACGGCCTGCGGGAGGTGCACGAGGCCGTCGGGATCGTGACCGCCTGCGAGGGGCTCCAGAACTGGAGCATGGACCTC
ATATCCTCCCTGCCCAACCAGACCCAGGAGATGTGGGAGGAGAGCTTGCGGTGCACCGTCGATGCCCGCCCCACGCATGT
CTCCGTCTACGACCTGCAGATCGAGCAGGGCACCAAGTTTGGCCAAATGTGAG-TTCATTCTATCCATATCTATGAGCTA
TGATCCCTATCTTGAAAACATTATCGGTCCTGACAAATA-----TGTGTGTTGTTTGTGGTGGTTCTGTTCTATAGATAA
TAACGAATTGGAGAAAAACTAACACACTGCAACCATCATCGTCACACAGTTAGCTACAAGTGTTGTTTTGATTTGCACTG
GTTTGTGTTTTAGAAGTTCGGTCTTCTCTTATTGGAAAGGGGCTACTTGTATTAATTAGGTTACAGAGCTGAGGTTACGA
TCCTGCAGTATCATAATCAACAGGCAAGCCGGGACTGCATCTTGTAGAACACCACCACACAA------CACCTTTCTACA
GCATCGAGCTAAACCATGCGCTACCCTGTTATCCTGCTTTTAGATTTTGAGTATTCTGTGACTCGGGAATTCAGGCAACA
ATTGACAAATCTCCTGAATGCCACCACTAATTGTGGACCAGCACAACATATGAGGATCGATGGCATTAGCCACCGTCAGG
CTGTTGCTGTCAATCAACATCGGCCTGATTAGTGTAGATCAGCGCCTTTTGGACACCTTCTAGACATGCGATGCAATGGT
TTCTGCTTCTCAGCATTAAGGCATCG-TGGCACCATGTCCTAGGCGGACAGAATTACTTTTTCCTCTTTGATTCTGATCA
CTGCCGTCCAAGTTGCAGTATTAGTTTGGCGGTAAAACTGGTGTCCACGTAATGACATAAACCATCTGACATCAGGTGGC
ATACAACTTATCTAGTAAGGAGTTGTCTCCTTGCTAGCTTGTCCCTGGATTACACTCTTGCGGTCTTGCCCTTTTCATCG
TATTCATTTATATCATGTTTGATATCTTGCAAAGTGTTCCTATAGTTCAGTGAGAACTGAACCGAAGCTCTGACTATTGC
CTCACTGTTTGCGAAGATTATATCACTCCAGAGAAAGAAGTTCAGTCTTCTTATTGAACTCATGATGCTGATAGTTGC-A
TGTTAAAAGGCTTAACTGGATTTGTTTTGGGGTGTATTACTCAACCAATTGCATTATACTACGACCTTATAAAGCCATGT
TGTTCTCTAGCCTGCCATCCTATATCCAAGTTTCTAACAATTTGGTCACATATTAATTTTCAGTCACATTTTTGTATGAA
AGATGAAATGAGCTCATCCTTAAATATGTGTCAGATTGATGCCGATCTCATCCTTTTCATATTAAATGTTGCAGCTATAC
GCCTGGTGTATTTCCTCTCCCAAATGAGACAGACTCTGCAAACTTCTACAAGATCGCTTCAAAACAGCTTTCTGAAGCAG
GATATCAACACTACGAGATCAGTAGCTACTGCAAGCCTGGTTACGAGTGCAAGCACAACGTAACATACTGGCAAAACAGG
CCGTTCTATGCGTTTGGTCTGGGATCGGCAAGCTACATCAACGGTGTCAGGTTCTCTAGGCCCAGAGGAATGAAGAACTA
CGCAGATTGGGTTCAGAAGCTGGAAGACGGGACCTGGTGCCACGAGCCTAGTGTCTCCGAGACGAAGGATATGGCGATGG
ACTCGGTGATGCTATCACTGAGAACAGCTCGCGGGCTGGATCTGCACAGTTTCAGTAAATCTTTTGGCGAGGGTCTGACA
CGGTCATTGTGCGAGACGTTTAGGCCTTTTGTTGAGAGTGGGTTGGTGATCGCCATGGACAAGGAGCGAGTGGCCCTGCA
GTTCAATGAGTTTGAGTCAGATTTG------GA------GGGTGAGATGAGTGGGAGCAGGGTGGCCTTCCTCCGCCTGA
GTGACCCGGATGGATTTCTGCTGTCCAACGAGTTGATCTCGCTTGCCTTTGGGACTATTTCGCCATGACAAGAGTAGCTG
GCTTTTCGCATTGATAATTCCACATTCTTATTTGTCAGATTTTATCTGACAAAATTGACACTTACTGATA----------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------TACTAGA
CATTAGCTGATCACTGGGATCCATAGCAATTTTTGTTTTACAAAATTGTTCAATTGTTCAGCTGGCACCAATC-GTGTGT
TTACCAGACCCCTAGCCGGTGCTTTCTGAATTTGAATTTAACGGGGCGCCTTCTACCTGTCAGTTGAGTTCGCACCTCCT
GAGATGGTAATGTAGTGTAGTACATCCTGGCGAGGATTATGTTTTGGCAAGGCTTGGTTATTGATAATGTGCACATGAAT
CGTTTAGTGGTCACGGGGTCTGAACACTGAACTTGAACTGCTGGTCCTGAAGAGAATCCTTGTGGAGGGCAAACAGAAAG
GATCGTCTTCAAGATGGAGGGCCTCAGCACCAACTGTTGTGTACGCTGTGCCTTCAGGAGCCTGAAACGATGAATCATCT
TGTAATGCAGTGCCCATTCTCCAGGACTGTCTGGTCATTGGTGACCGTAGCTCTGAATATTGCCATCCCGTGCCTTCTTT
AGCAAAATTCAGTTCTCGTGTGTCGGCGGGAGGAGGTGCTCGCCAATTATCCGAGGGCAAACACAAAGGAAGCCGGCGCG
ATAATCACTCCGGTGATATTCTCCATCTGGAAAGAGAGGAATCGGCGAACTTCTGACAACATCTCAACCTCGGACAGCGA
GGTGGCAAACAAAATCCTTGCGGAGTGACCATTCCTAAAACAAATCCTTGTGGAGTGGAGGCTATGGAAACTAGCTTGGC
ATACGAAGAGGAGCG-----------GTGCGAGAACAAGAGCGAAATCCCT---ATAGGCTTGGGGTGGATGTGGATTGC
TAGAGCCTTTCTTCTTTAGCATCATGTAGCTAAAACTCTTTCAATCTT----------AATGAATCCACACGCAAAGCTC
TTGCGTGTTCCGGAAAAAAGAACTTGAATTGCTGCAGTCAGGTGCCGAGAGTTTCA
>chr4D_369
GTTTTTTGAT----------------------------------------------------------------------
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----------------------------------------------------------GTTTTTTTAAATTTTGTTAGGG
TTTGTGTCCTACTCAGATAAGCGAGCGCGGGGGCGGCTCTATGTAGATGAAATAAGATCCTCCCTGCTTAGCCCCTGTTC
CAGTGGTGTCTCTAGTATTGTCGAAGGGCGTGTGGAGGTTTATCTCCGGCGGATCTCGTGGGATTCGATCGGCA-TTTGT
CTTCGGTGGATCCACGTGGATCCGGTCTTCATACGTCTGTGTTCGTGTGTCTACAGGCTGGACCGTTCCGATCTGCATTT
CTCTTCCTCGGCGGCGATTGTTGTTCTGGTGTGCTGGTCCTATGGGGTTTTAGCACGAAGACTTCTCGACTGTCTACTAC
AATAAGGTTTGCCCGACTCCGATGAGGAAGGGTAATGACGGCGACGCGCCTTCGGCTCGCTTCAATGCTTGTAGTCGTCG
CTATGTGGTCTACAGACCTGGATATA-TTTTTTTACTTCTGGTGTTCTTTATACTACCTTGACAGTTGATGAATAGATCG
GAAGTTTTTCTGAAAAAAA-------------------------------------------------------------
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--------------------------------------------------------
>chr1D_883
AAAAAACACACGGCTGAATGC-----------------------------------------------------------
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----------------------------TACTTAAAAGTCAATTTGGATTTTGTCGCCATTTTCAACTCAATGCAAAATT
GTCTCTTTACCAGTCCACCGGGAGGAGCCTTT---GGGAGGCGAGTGGTCAGTAATGCTAAGATCAGCCTTCCCTCTCGT
CTTCCAGTTGCCGCACAGGAAACCGCCCCCAATCCGCCCACCCCGCCCACCACCTGTTCGTCGCTATGCCTCCCCGGCCG
CCGCCGTCCCGCCGCCGCCTCCTCCGCCACGGCCGCTTCCCCCGGCCTCTGCCTACGTGCACCTCCCCTTCTGCCGCAAG
CGCTGCCACTACTGCGACTTCCCCATCGTGGCGCTCGGCTCCTCCGCCTCCTCCCCCGGCGGCCCGGGCGAGGGCGAGGA
TCCTCGGATCGCCGACTACGTGCGCCTCCTGCTCCGGGAGGTGGCCGCCACGCGTCCCGTCTCCGACGACGGCGTGCCGC
TCGAGACCATCTTCTTCGGCGGCGGCACCCCGTCGCTGGTCCCGCCGAGGCTGGTGGCCGCGGTGCTCGACGCGCTGCGC
GGCAGGTTCGGGCTGTCCGCGTGCCCGGAGGTGTCCATCGAGATGGACCCCGGCACGTTCGACGCGGCCAAGCTGCGGGA
GCTGGTGGGCGTGGGCGTGAACCGGGTGTCGCTCGGCGTGCAGGCGTTCCAGGAGGAGCTGCTCCGGGCGTGCGGCCGCG
CGCACGGCCTGCGGGAGGTGCACGAGGCCGTCGGGATCGTGACCGCCTGCGAGGGGCTCCAGAACTGGAGCATGGACCTC
ATCTCCTCCCTGCCCAACCAGACCCAGCAGATGTGGGAGGAGAGCTTGCGGTGCACCGTCGATGCCCGCCCCACGCATGT
GTCTGTCTATGATCTGCAGATTGAGCAGGGCACCAAGTTTGGGCAAATGTGAGTTTTATTCTGTCCATACCTATGAGCTA
TGATCCCTATCTTGAAAACATTATCGCTCCTGACAAATA-----TGTGTGTTGTTTGTGGTGGTTCTGTTCTATAGATAA
TAACGAATTGGAGAAAAACTAACACACTGCAACCATCATCGTCACACAGTTAGCTACAAGTGTTGTTTTGATTTGCACTT
GTTTGTGTTTTAGAAGTTCAGTCTTCTCTTATTGGAAAGGGGCTACTTGTATTAACTAGGTTACAGAGCTGAGGTTACGA
TCCTGCAGTATCATAATCAACAGGCAAGCCGGGACTGCATCTTGTAGAACACCACCACACAACAT-----CCTTTCTACA
GTATCGAGCTAAACCATGCGCTACCCTGTTATCCTGCTTTTAGATTTTGAGAATTCTGTGACTCAGGAATTCAGGCAACA
CGAGACAAATCTCCTGAATGCCACCACTAATTGTGGACCAGCACAACATATGAGGGTCGATGGCATTAGCCACCGTCAGG
CTGTTGCTGTCAATCAACATCGGCCTGATTAGTGTAGATCAGCGCCTTTTGGACACCTTATAGACATGCGATGCAATGGT
TTCTGCTTCTCAGCATTAAGGCATCG-TGGCACCATGCCCTAGGCGGACAGAATTACTTTTTCCTCTTTGATTCTGATCA
CCGCCGTCCAAGTTGCAGTATTAGTTTGGCGGTAAAACTGGTGTCCACATAATGACATAAACCATCTGACATCAGGTGGC
ATACAACTTATCTAGTAAGGAGTTGTCTCCTTGCGAGCTTGTCCGTGGATTACACTC--------TTGCCCTTTTCATCG
TATTCATTTACATCATCTTTGATATCTTGCAAAGTGTTCCTATAGTTCAGTAAGAACTGAACCGACGCTCTGACTGTTGC
CTCACTGTTCGCGAAGATTATGTCATTCCAGAGAAAGAAGTTCAGTCTTCTTATTGAACTCATGCTGCTGATAGTTGC-A
AGTTAAAAGGCTTAACTGGATTTGTGTTCGGGTGTATTACTCAACCAATTGCATTATACTACTACCTTATAAAGCCATGT
TGTTCTCTAGCCTGCCATCCTATATCCAAGTTTCTAACAATTTGGTCACATATTAATTTTCAGTCACATTTTTGTATGAA
AGATGAAATGAGCTCATCCTTAAATATGTGTCAGATTGATGCCTATCTCACTCTTTCCATATCAAATGTTGCAGCTATAC
GCCTGGTGTATTTCCTCTCCCAAATGAGACAGACTCTGCGAACTTCTACAAGATAGCTTCGAAGCGGCTTTCTGAAGCAG
GATATCAACACTACGAGATCAGTAGCTACTGCAAGCCTGGTTACGAGTGCAAGCACAACGTAACATACTGGCAAAACAGG
CCGTTCTATGCGTTTGGTCTTGGATCAGCAAGCTACATCAACGGTGTCAGGTTCTCTAGGCCCAGAGGAATGAGGAACTA
CGCGGATTGGGTTCAGAAGCTTGAAGACGGAACCTGGTGCCACGAGTCTAGCATCTCCGAGACAAAGGATATGGCGATGG
ACTCGGTGATGCTATCGCTGAGAACAGCCCGCGGGCTAGATCTGCACAGTTTCAGTAAATCTTTTGGAGAGGCTCTGACA
CGGTCATTGTGCGAGACGTTTAGGCCTTTTGTTGAGAGTGGACTGGTGATCGCCATGGACAAGGAGCGAGAGGCCCTGCA
GTTCAATGAGTTCGAGTCAGATTTGGAAAGCGA------GGGTGAGATGAGTGGGAGCAGGATGGCCTTCCTCCGTCTGA
GTGACCCAGATGGATTTCTGCTGTCCAACGAGTTGATCTCGCTTGCCTTTGGGACTATTTCGCCATGACAACAGTAGCTG
GCTTTTCGCATTGATAATTCCACATTCTTGTTTGTCAGATTTTATCTGACAAAATTGACACTTACTGATATACTCCCTCC
GTTCCTAAATATAAGTCTTTTTAGACATTTCAAATGGACTACAACATACGGATGTATGTAGACATATTTTGGAGTGTAGA
TTCACTCATTTTGCTCCGTATGTAGTCACTTGTTGGAATATCTAGAAAGACTTATATTTGGGAACGGAGGGAGTACTAGA
CATTAGCTGATCACTGGGATCCATAGCATTTTTTTTAAAG-------GTTCAATTATTCAGCCAGCACCTATCAGTGCGT
TTACGAGACACCTAGCTGGTG-TTTCTGAATTTAAATTTAACTGGGCGCGTCTCC---GTCAGTTGAGTTCACACATCCT
GAGATGATGATGT-------------------------------------------------------------------
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>chr1B_959
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--------ACCAGTCCACCGGGAGGAGCCTTGGGAGGGAGGCGAGTGGTCAGTAATGCTAAGATCAGCCTTCCCTCTCGT
CTCTCAGTTGCCGCACAGGAAACCGCCCCCAATCCACCCACCCCGCCCACAACCTGTTCGTCGCTATGCCTCCCCCGCCG
CCGCCGTCCCGCCGCCGCCTCCTCCGCCACGCCCACTACCTCCGGCCTCCGCCTACGTGCACCTCCCCTTCTGCCGCAAG
CGGTGCCACTACTGCGACTTCCCCATCGTGGCGCTCGGCTCCTCCGCGTCCTCCCCCGGCGGCCCGGGCGAGGGCGAGGA
CCCCCGGATCGCCGACTACGTGCGCCTCCTGCTCCGGGAGGTAGCCGCCACGCGTCCCGTCTCCGACGACGGCGTGCCGC
TGCAGACCATCTTCTTCGGCGGCGGCACCCCGTCGCTAGTCCCGCCGAGGCTGGTGGCCGCGGTGCTCGACGCGCTGCGC
GGCAGGTTCGGGCTGTCCGCGTGTCCGGAGGTGTCCATCGAGATGGACCCCGGCACGTTCGACGCGGCCAAGCTGCGGGA
GCTGGTGGGCGTGGGCGTGAACCGGGTGTCGCTCGGCGTGCAGGCGTTCCAGGAGGAGCTGCTCCGGGCGTGCGGCCGCG
CGCACGGCCTGCGGGAGGTGCACGAGGCCGTCGGGATCGTGACCGCCTGCGAGGGGCTCCAGAACTGGAGCATGGACCTC
ATCTCCTCCCTGCCCAACCAGACCCAGGAGATGTGGGAGGAGAGCTTGCGGCGCACCGTCGATGCCCGCCCCACGCATGT
CTCCGTCTACGACCTGCAGATCGAGCAGGGCACCAAGTTTGGGCAAATGTGAG-TTCATTCTGTGCATGACTACTCCTAT
GG---CCTATCTTGAAAACATTATCGGTCCTGACAAATACTCTATGTGCGTGGTTTGTGGTGGTTCTGTTCTATGGATAA
TGA--AATTGGGTGAAAACTAACACACTACAACCATCATCTTCAAACAATTAGCTACAATTCTTGTTTTGATTTGCACTG
GTTTGTGCTGTACAAGCTCAGTCTTCTCTTCTTGGAAAGGGGCTACTTATTAA---TAAGTTACAGAGCTGAGATTACAA
TCGCGCAGTAATCATACCAACAGGCAGGCCAGGACTGTATCTCGTAGAACACTGACACAACCAAGAACCACCTTTCTACA
GTGCGGAGCTAAACCATTCGATACCCTGTGACCCTGCTTTTAGA--------ATTCTGTGACTTGAGAGTTCAGGCAACA
GGAGACAAACCTCTCGAATGCTACCACTAATTGTGAGGCTT-----------------GAGGGCATTAACCACCATCGGG
CAATTGCTCTGAATCGGCATCGGCCTGATTAGTGCAGACCAGCGCTTTTTGGACACCGTCTAGACATCT-----AATGGC
TTCTGTTTCTTATGCATTAGGGCAACATGGCACCATGTCCCAGGCAGGCATAATGATTTTTTCCTCTTCATT--------
-TGTCGTCCAAGTTGCAATTTTATTTTAGGTGGCATCTAACCAGTGC---------------------------------
-TACAATTTGTCTGGCATGGAATT-TCTCCTTGCTAGCTTGTCCGTGGACTACAGTAGTCTTGCC---------------
----------------CTTTGATATATTGTAAAGTGTTACTACAATTGAGTAAGAACTGAACCGTAGGTCTGATTGTTGT
CTAACTGTTCGTGAAGGTTATGTCATTCCAGAGAAAGAAGTTCAGTCTTCTTTTCTGACTCATGATGCTGATAGTTGCGA
AGTTAAAGGGCTTAACTGAATTTTTTCGGGGGGGTATTACACAGCC---TGCATTATACTACTAAGG-------------
-------------------------CCAAGTTTCTAACAATTTCTTCACATATTAATTTGCACTGACATTTTTGTATTAA
AGATCAAGCGAACTCACG--TAAATATGTGTCATACTGATGCCAATCTCATTCTTTTCATATTAAATGTTGCAGCTATAC
GCCTGGTGTATTTCCTCTCCCAAATGAGACAGACTCTGCGAACTTCTACAAGATAGCTTCGAAACGGCTTTCTGAAGCAG
GATATCAACACTACGAGATCAGTAGCTACTGCAAGCCTGGTTACGAGTGCAAGCACAACGTAACATACTGGCAAAACAGG
CCGTTCTATGCGTTTGGCCTTGGATCAGCAAGCTACATCAACGGTGTCAGGTACTCGAGGCCCAGAGGAATGAAGAACTA
CGCAGATTGGGTTCAGAAGCTGGAAGACGGCACCTGGTGCCATGAGTCCAGCGTCTCCGAGACGAAGGATATGGCTATGG
ACTCGGTGATGCTGTCACTGAGAACAGCTCGCGGGCTGGATCTGCACAGTTTCAGTAAATCTTTTGGAGAGGGTCTGACA
CGGTCATTGTGTGATACGTTCAGGCCTTTTGTTGAGAGTGGGCTGGTGATCGCCATGGACAAGGAGCGAGAGGCCCTGCA
GTTCAGTGAGTTTGAGTCGGATTTG------GAAAGCGAGGGAGAGATGACCGGGAGCAGGGTGGCCTTCATCCGTCTGA
GTGACCCGGATGGATTTCTGTTGTCCAATGAGTTGATCTCGCTGGCCTTTGGGACTATTTCGCCATGACAACAGTAGCTG
GCTTTTCGCATTGATAATTCCGTATTCTTATTTGTCAGATTTTATCTGACAAAATTGACACTTACTGATA----------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------TACTAGA
CATTAGCTGATCACTGGGATCCATAGCAATTTTTGTTTTATAAAATTGTTCAAATTTTCAGCCGACACATATCGGTGCGT
TTACCAGACTCCTAGCTGGTG-CTTCTGAATTTAAATTTAATGGGGCACCCTCTACGAA----TTGAGTTCGCACCTCCT
GAGATGATAATGTAGTGTGGTACATCCTGGCGAGGATCATGTTTTGGCAAGGCTTGGTTGCTGATAATGTGCACATGAAT
TGCTTAGTGGTCACGGAGTCTGGACGCTGAACTTTACCTGCTGGTCCTGAACAGAATCCTTGCGGAGGGCAAACAGAAAG
GATCGTCTTCAAGATCGAGGGCCTCAGCACCAACCGCTGTGTACGCTGTGCCTTGAGGAGCCTGGAACGATGAATCATCT
CCTAAGGCAGTGTCCATTCCCCGGGACTGTCTGGTCATCGGTAACCATACCTCTGAATATTGCCATCCCGTGCCCTC---
AGCAAAATTCAGTTCTCGTGCCTTGGTGGGAAGAGGTGCCCGCCG-------------------AAAGGAAGCCAGCGTG
ATAATCACTCTGGTGATGTTCTCCATCTGGAAAGAGAGGAATCGGCGAACTTTCGATAATATCTCAACCTCGGACAACGA
GGTGGCAAACAAAATCCTTG------------------------------TGGAGTGAAGGCTATGGAAACTAGCTTGGC
ATATGAAGAGGAGTGAAGTGAGGATAGTGAGAGAACAAGAGACATAAAATTCTCATAGGCTTGGGGTGGATGTGGATTGC
TTGAGACTTTCTTCTTTAGCATCATGTAACTTAAACTCTTTTGTTCTATCCAATCTTAAATGCATCAACACGCAAAGCTC
TTGCGTGTTTAGGAAAAAAGAACTTGAGCTGCTGCAGTCAGGTGCCGAGATTTTCA
>SNPs
S-S------S-SSS-SS-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S-------------
-----------------S-S-SS--SSS-S-S--------S--S-----S-----S-SS-----S--SS--------S-S
--SS-S--SS-S---S--S---SS----------S-----SS----S--S-------S-----S--S------SS-----
---S----S--S--S---S--SS-SSS-SSS-SSSS-----S-S----S------SSSS---S-S---S-----S-SS--
---S--S---SS----S-----S--S--S--S---S--SSSSSSS-SS--SS------S--------SS-----------
-----SS-------SSS---S--S---S-----SS------S-S---S-----S-------SS-S-----S---------
---SS--------S--SS-S---S--S-----------S--S--------S-----S-------SS------S--S--S-
S-SS-S---SSS----S-SSSSSSSSSS--S------S-----------S-SSSSS-S----------------------
-------------S-------------------S----------------------------------------S--S--
S-------------------------------------------------------------------------------
-------------------S-----------------S--------S-----S---------------------------
------------------------------------------------S-------------------------------
------------------------------------------------------S-------------------------
-------------------------------------------------------------------S------------
--------------------------------------------------------------------------------
---------------------S----------------------------------------------------------
--------------------------------------------------------------------------------
--S-----------------------------------------------------------------------------
------------------------------------------S-------------------S------S----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------S-----------------------------------S------------------------
--------------------------------------------------------------------------------
-S-------------------------------------------------S----------------------------
SSS----------------------------------------------------S------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------S-------------------------------
--------------------------------------------S------------S-SSS-S----------------
----------S-----S----------------------------------S-----------------------S----
---------S-----------S---S------------------------------------------------------
S-------------------------------------------------------------S-----------------
--------------------------------------------------------------------------------
-------------------------------------------S-------S----------------------------
---------------------------------------S--------------S-----S----S--------------
--------------------------------------------------------------------------------
--------------------S-----S-----------------------------------------------------
------------------------------S---------------S----S----------------------------
-------------------------------------------------------------------S------------
------------------------------------------S---------------------------S---------
---------------------------------------------------------------------------S----
-----------------------------------------------------------------------S--------
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----------------------------------------S--------------S------S------S-------S--
---------S------S----S-----------S----------------------SS----------------------
------S-----------S------------------S---------------------SS-------------------
S-S-------------S-----S--S--------S-S--------------S----------S-----------------
---------------S------------------S-S-----------------S---------S---------------
SS---S------S------S--S---------------S---S---S--S------------------------S--SSS
--------------------SS-S--S----S-------S----SSSSSSSSSSSSSSSSSSSS----------S---S-
----------S------S----------------------------------SS--S--S----------------S---
--------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S----------------------
---S---------S---------------S-----------SS-S-SSSS------------------------------
-S---S----------------------S--S---------SSS---S--------------S---S-------------
---------SS----------------SS---------------------S-----
>forward_331
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------CACACCTGA
AGGCCATGGAT---------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------
>reverse_2162
--------------------------------------------------------------------------------
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-CATCGAGCTAAACCATGCGC-----------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------
>forward_360
--------------------------------------------------------------------------------
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--------------------ATCCTGACTCTTGCCAACGG----------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------
>reverse_2243
--------------------------------------------------------------------------------
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--TGACAAATCTCCTGAATGCCAC--------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------
>forward_569
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------CGGCGTTTTGT
CTTTGGTGT-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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>reverse_2529
--------------------------------------------------------------------------------
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------------------------------------------------GTAATGACATAAACCATCTGACATCA------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------
>forward_651
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------TCTACGCTT
CTCCTCGTCGA---------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_2620
--------------------------------------------------------------------------------
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-----------------------------------------------------------GCGGTCTTGCCCTTTTCATC-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------
>forward_748
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------TTGCCCCGTTCCAATAAGGG----------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------
>reverse_2621
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------CGGTCTTGCCCTTTTCATCG
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------
>forward_1035
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------------------TGCTAAGATCAGCCTTCCCG-----
--------------------------------------------------------------------------------
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--------------------------------------------------------
>reverse_2716
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------ATTGC
CTCACTGTTTGCGAAG----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------
>forward_2529
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------CGGTAAAACTGGTGTCCACG-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------
>reverse_3483
--------------------------------------------------------------------------------
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------------------------------------------TTGGTGATCGCCATGGACAA------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------
>forward_3311
--------------------------------------------------------------------------------
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-----------TTCAGAAGCTGGAAGACGGG-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------
>reverse_4609
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------------TGTGGAGTGGAGGCTATGGA------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------
